Upload 15 files
Browse files- .gitattributes +6 -0
- deeplabv3plus/config/experiment_config.json +21 -0
- deeplabv3plus/figures/comparison_visualization.pdf +3 -0
- deeplabv3plus/figures/comparison_visualization.png +3 -0
- deeplabv3plus/figures/dice_distribution.pdf +0 -0
- deeplabv3plus/figures/dice_distribution.png +3 -0
- deeplabv3plus/figures/dice_iou_distribution.pdf +0 -0
- deeplabv3plus/figures/dice_iou_distribution.png +3 -0
- deeplabv3plus/figures/metrics_comparison.pdf +0 -0
- deeplabv3plus/figures/metrics_comparison.png +3 -0
- deeplabv3plus/figures/training_curves.pdf +0 -0
- deeplabv3plus/figures/training_curves.png +3 -0
- deeplabv3plus/leverage_summary.txt +76 -0
- deeplabv3plus/tables/comprehensive_results.csv +4 -0
- deeplabv3plus/tables/comprehensive_results.xlsx +0 -0
- deeplabv3plus/tables/latex_table.tex +12 -0
.gitattributes
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transunet/figures/dice_iou_distribution.png filter=lfs diff=lfs merge=lfs -text
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transunet/figures/metrics_comparison.png filter=lfs diff=lfs merge=lfs -text
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transunet/figures/training_curves.png filter=lfs diff=lfs merge=lfs -text
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transunet/figures/dice_iou_distribution.png filter=lfs diff=lfs merge=lfs -text
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transunet/figures/metrics_comparison.png filter=lfs diff=lfs merge=lfs -text
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transunet/figures/training_curves.png filter=lfs diff=lfs merge=lfs -text
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deeplabv3plus/figures/comparison_visualization.pdf filter=lfs diff=lfs merge=lfs -text
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deeplabv3plus/figures/comparison_visualization.png filter=lfs diff=lfs merge=lfs -text
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deeplabv3plus/figures/dice_distribution.png filter=lfs diff=lfs merge=lfs -text
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deeplabv3plus/figures/dice_iou_distribution.png filter=lfs diff=lfs merge=lfs -text
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deeplabv3plus/figures/metrics_comparison.png filter=lfs diff=lfs merge=lfs -text
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deeplabv3plus/figures/training_curves.png filter=lfs diff=lfs merge=lfs -text
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deeplabv3plus/config/experiment_config.json
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"timestamp": "20251124_180934",
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"input_shape": [
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256,
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],
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"epochs": 50,
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"batch_size": 8,
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"learning_rate": 0.0001,
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"validation_split": 0.1,
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"random_state": 42,
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"loss_options": {
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"scenario1": "weighted_bce",
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"scenario2": "weighted_categorical"
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}
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}
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deeplabv3plus/figures/comparison_visualization.pdf
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version https://git-lfs.github.com/spec/v1
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oid sha256:327f784dd4c24ff8f6457475578c7aa623501c17be243a593b5767fa748a0f5c
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size 3440927
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deeplabv3plus/figures/comparison_visualization.png
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Git LFS Details
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deeplabv3plus/figures/dice_distribution.pdf
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Binary file (17.3 kB). View file
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deeplabv3plus/figures/dice_distribution.png
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Git LFS Details
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deeplabv3plus/figures/dice_iou_distribution.pdf
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Binary file (20.5 kB). View file
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deeplabv3plus/figures/dice_iou_distribution.png
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Git LFS Details
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deeplabv3plus/figures/metrics_comparison.pdf
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Binary file (17.6 kB). View file
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deeplabv3plus/figures/metrics_comparison.png
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Git LFS Details
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deeplabv3plus/figures/training_curves.pdf
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Binary file (21.3 kB). View file
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deeplabv3plus/figures/training_curves.png
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Git LFS Details
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deeplabv3plus/leverage_summary.txt
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LEVERAGE PAPER RESULTS SUMMARY
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================================
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Experiment Timestamp: 20251124_180934
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WMH Segmentation: Binary vs Three-class Classification Comparison
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DATASET INFORMATION:
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--------------------
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Training Images: 1044
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Test Images: 161
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Image Size: (256, 256)
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Classes: Background (0), Normal WMH (1), Abnormal WMH (2)
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METHODOLOGY:
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------------
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Architecture: Enhanced U-Net with Batch Normalization and Dropout
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Loss Functions:
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- Scenario 1: weighted_bce
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- Scenario 2: weighted_categorical
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Training Epochs: 50
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Batch Size: 8
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Learning Rate: 0.0001
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PERFORMANCE RESULTS:
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--------------------
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| Scenario 1 (Binary) | Scenario 2 (3-class) | Improvement
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--------------------|---------------------|----------------------|------------
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Accuracy | 0.9751 | 0.9915 | +0.0164
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Precision | 0.2306 | 0.4637 | +0.2331
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Recall | 0.9838 | 0.7961 | -0.1876
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Dice Coefficient | 0.3736 | 0.5861 | +0.2125
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IoU Coefficient | 0.2297 | 0.4145 | +0.1848
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STATISTICAL SIGNIFICANCE:
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-------------------------
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DICE COEFFICIENT:
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Test: Paired t-test
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t-statistic: 9.1289
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p-value: 0.0000
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Effect Size (Cohen's d): 0.5655
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95% Confidence Interval: [0.1278, 0.1983]
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Result: SIGNIFICANT improvement
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IoU COEFFICIENT:
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Test: Paired t-test
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t-statistic: 9.2000
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p-value: 0.0000
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Effect Size (Cohen's d): 0.6282
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95% Confidence Interval: [0.1177, 0.1821]
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Result: SIGNIFICANT improvement
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KEY FINDINGS:
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-------------
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1. Three-class segmentation shows 72.03% improvement in Dice coefficient
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2. Three-class segmentation shows 99.70% improvement in IoU coefficient
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3. Dice analysis confirms significant improvement
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4. IoU analysis confirms significant improvement
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5. Post-processing provided substantial improvements in both scenarios
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FILES GENERATED:
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----------------
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- Models: scenario1_binary_model.h5, scenario2_multiclass_model.h5
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- Figures: training_curves.png/.pdf, comparison_visualization.png/.pdf, metrics_comparison.png/.pdf
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- Tables: comprehensive_results.csv/.xlsx, latex_table.tex
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- Statistics: statistical_analysis.json, statistical_report.txt
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- Predictions: All test predictions and ground truth data saved
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PUBLICATION READINESS:
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----------------------
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✓ High-resolution figures (300 DPI, PNG/PDF)
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✓ LaTeX-formatted tables
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✓ Comprehensive statistical analysis (Dice + IoU)
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✓ Post-processing impact analysis
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✓ Reproducible results with saved models
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✓ Professional documentation
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deeplabv3plus/tables/comprehensive_results.csv
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Scenario,Accuracy,Precision,Recall,Specificity,Dice,IoU,HD95,ASSD
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Binary Classification (Processed),0.9751426744164887,0.23057465300298352,0.9837612105508107,0.9998735813397832,0.3735875824298393,0.22970040142536163,,
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Three-class Classification (Processed),0.9915259698903338,0.4636951727876803,0.7961283505867851,0.9984437529711327,0.5860517227030525,0.4144788980484009,,
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Statistical Analysis,Dice p=0.0000,Dice t=9.1289,Dice Δ=0.1630,Dice ES=0.5655,IoU p=0.0000,IoU Δ=0.1499,HD95 Δ=0.4319px,ASSD Δ=-1.5085px
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deeplabv3plus/tables/comprehensive_results.xlsx
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deeplabv3plus/tables/latex_table.tex
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\begin{table}
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\caption{Performance comparison between binary and three-class segmentation approaches}
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\label{tab:performance_comparison}
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\begin{tabular}{lllllllll}
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\toprule
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Scenario & Accuracy & Precision & Recall & Specificity & Dice & IoU & HD95 & ASSD \\
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\midrule
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Binary Classification (Processed) & 0.9751 & 0.2306 & 0.9838 & 0.9999 & 0.3736 & 0.2297 & NaN & NaN \\
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Three-class Classification (Processed) & 0.9915 & 0.4637 & 0.7961 & 0.9984 & 0.5861 & 0.4145 & NaN & NaN \\
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\bottomrule
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\end{tabular}
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\end{table}
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