Upload 5 files
Browse files- config.json +25 -0
- pytorch_model.bin +3 -0
- special_tokens_map.json +7 -0
- tokenizer_config.json +16 -0
- vocab.txt +69 -0
config.json
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"_name_or_path": "/content/drive/MyDrive/Logan/Codon_LLM/Weights/CodonBERT-BFD",
|
| 3 |
+
"architectures": [
|
| 4 |
+
"BertModel"
|
| 5 |
+
],
|
| 6 |
+
"attention_probs_dropout_prob": 0.0,
|
| 7 |
+
"classifier_dropout": null,
|
| 8 |
+
"hidden_act": "gelu",
|
| 9 |
+
"hidden_dropout_prob": 0.0,
|
| 10 |
+
"hidden_size": 1024,
|
| 11 |
+
"initializer_range": 0.02,
|
| 12 |
+
"intermediate_size": 4096,
|
| 13 |
+
"layer_norm_eps": 1e-12,
|
| 14 |
+
"max_position_embeddings": 40000,
|
| 15 |
+
"model_type": "bert",
|
| 16 |
+
"num_attention_heads": 16,
|
| 17 |
+
"num_hidden_layers": 30,
|
| 18 |
+
"pad_token_id": 0,
|
| 19 |
+
"position_embedding_type": "absolute",
|
| 20 |
+
"torch_dtype": "float32",
|
| 21 |
+
"transformers_version": "4.29.2",
|
| 22 |
+
"type_vocab_size": 2,
|
| 23 |
+
"use_cache": true,
|
| 24 |
+
"vocab_size": 69
|
| 25 |
+
}
|
pytorch_model.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:992e98298217ad531b101a176a91909713d1be761ad1db9f39ff3c1137a51dbd
|
| 3 |
+
size 840147869
|
special_tokens_map.json
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"cls_token": "[CLS]",
|
| 3 |
+
"mask_token": "[MASK]",
|
| 4 |
+
"pad_token": "[PAD]",
|
| 5 |
+
"sep_token": "[SEP]",
|
| 6 |
+
"unk_token": "[UNK]"
|
| 7 |
+
}
|
tokenizer_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"clean_up_tokenization_spaces": true,
|
| 3 |
+
"cls_token": "[CLS]",
|
| 4 |
+
"do_basic_tokenize": true,
|
| 5 |
+
"do_lower_case": false,
|
| 6 |
+
"full_tokenizer_file": null,
|
| 7 |
+
"mask_token": "[MASK]",
|
| 8 |
+
"model_max_length": 1000000000000000019884624838656,
|
| 9 |
+
"never_split": null,
|
| 10 |
+
"pad_token": "[PAD]",
|
| 11 |
+
"sep_token": "[SEP]",
|
| 12 |
+
"strip_accents": null,
|
| 13 |
+
"tokenize_chinese_chars": true,
|
| 14 |
+
"tokenizer_class": "BertTokenizer",
|
| 15 |
+
"unk_token": "[UNK]"
|
| 16 |
+
}
|
vocab.txt
ADDED
|
@@ -0,0 +1,69 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[PAD]
|
| 2 |
+
[UNK]
|
| 3 |
+
[CLS]
|
| 4 |
+
[SEP]
|
| 5 |
+
[MASK]
|
| 6 |
+
a
|
| 7 |
+
A
|
| 8 |
+
@
|
| 9 |
+
b
|
| 10 |
+
B
|
| 11 |
+
#
|
| 12 |
+
$
|
| 13 |
+
%
|
| 14 |
+
r
|
| 15 |
+
R
|
| 16 |
+
n
|
| 17 |
+
N
|
| 18 |
+
d
|
| 19 |
+
D
|
| 20 |
+
c
|
| 21 |
+
C
|
| 22 |
+
e
|
| 23 |
+
E
|
| 24 |
+
q
|
| 25 |
+
Q
|
| 26 |
+
^
|
| 27 |
+
G
|
| 28 |
+
&
|
| 29 |
+
g
|
| 30 |
+
h
|
| 31 |
+
H
|
| 32 |
+
i
|
| 33 |
+
I
|
| 34 |
+
j
|
| 35 |
+
+
|
| 36 |
+
M
|
| 37 |
+
m
|
| 38 |
+
l
|
| 39 |
+
J
|
| 40 |
+
L
|
| 41 |
+
k
|
| 42 |
+
K
|
| 43 |
+
(
|
| 44 |
+
f
|
| 45 |
+
F
|
| 46 |
+
p
|
| 47 |
+
P
|
| 48 |
+
o
|
| 49 |
+
O
|
| 50 |
+
=
|
| 51 |
+
s
|
| 52 |
+
z
|
| 53 |
+
Z
|
| 54 |
+
w
|
| 55 |
+
S
|
| 56 |
+
X
|
| 57 |
+
T
|
| 58 |
+
t
|
| 59 |
+
x
|
| 60 |
+
W
|
| 61 |
+
y
|
| 62 |
+
Y
|
| 63 |
+
u
|
| 64 |
+
v
|
| 65 |
+
U
|
| 66 |
+
V
|
| 67 |
+
]
|
| 68 |
+
}
|
| 69 |
+
)
|