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license: apache-2.0
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---
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license: apache-2.0
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---
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+
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---
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license: cc-by-4.0
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language:
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- es
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tags:
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- casimedicos
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- explainability
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- medical exams
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- medical question answering
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- extractive question answering
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- squad
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- multilinguality
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- LLMs
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- LLM
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pretty_name: mdeberta-expl-extraction-multi
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task_categories:
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- question-answering
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size_categories:
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- 1K<n<10K
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---
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<p align="center">
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<br>
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<img src="http://www.ixa.eus/sites/default/files/anitdote.png" style="height: 200px;">
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<br>
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# mdeberta-v3-base finetuned for Explanatory Argument Extraction
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We finetuned mdeberta-v3-base on a **novel extractive task** which consists of **identifying the explanation of the correct answer written by
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medical doctors in medical exams**.
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The training data is based on [Antidote CasiMedicos](https://huggingface.co/datasets/HiTZ/casimedicos-squad) for EN,ES,FR,IT languages.
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The data source consists of Resident Medical Intern or M茅dico Interno Residente (MIR) exams, originally
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created by [CasiMedicos](https://www.casimedicos.com), a Spanish community of medical professionals who collaboratively, voluntarily,
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and free of charge, publishes written explanations about the possible answers included in the MIR exams. The aim is to generate a resource that
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helps future medical doctors to study towards the MIR examinations. The commented MIR exams, including the explanations, are published in the [CasiMedicos
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Project MIR 2.0 website](https://www.casimedicos.com/mir-2-0/).
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We have extracted, clean, structure and annotated the available data so that each document in **casimedicos-squad** includes the clinical case, the correct answer,
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the multiple-choice questions and the commented exam written by native Spanish medical doctors. The comments have been annotated with the span in the text that
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corresponds to the explanation of the correct answer (see example below).
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<table style="width:33%">
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<tr>
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<th>casimedicos-squad splits</th>
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<tr>
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<td>train</td>
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<td>404</td>
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</tr>
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<tr>
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<td>validation</td>
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<td>56</td>
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</tr>
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<tr>
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<td>test</td>
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<td>119</td>
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</tr>
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</table>
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## Example
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<p align="center">
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<img src="https://github.com/ixa-ehu/antidote-casimedicos/blob/main/casimedicos-exp.png?raw=true" style="height: 650px;">
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</p>
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The example above shows a document in CasiMedicos containing the textual content, including Clinical Case (C), Question (Q), Possible Answers (P),
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and Explanation (E). Furthermore, for **casimedicos-squad** we annotated the span in the explanation (E) that corresponds to the correct answer (A).
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The process of manually annotating the corpus consisted of specifying where the explanations of the correct answers begin and end.
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In order to obtain grammatically complete correct answer explanations, annotating full sentences or subordinate clauses was preferred over
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shorter spans.
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## Data Explanation
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The dataset is structured as a list of documents ("paragraphs") where each of them include:
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- **context**: the explanation (E) in the document
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- **qas**: list of possible answers and questions. This element contains:
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- **answers**: an answer which corresponds to the explanation of the correct answer (A)
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- **question**: the clinical case (C) and question (Q)
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- **id**: unique identifier for the document
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## Citation
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If you use this data please **cite the following paper**:
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```bibtex
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@misc{goenaga2023explanatory,
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title={Explanatory Argument Extraction of Correct Answers in Resident Medical Exams},
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author={Iakes Goenaga and Aitziber Atutxa and Koldo Gojenola and Maite Oronoz and Rodrigo Agerri},
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year={2023},
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eprint={2312.00567},
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archivePrefix={arXiv}
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}
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```
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**Contact**: [Iakes Goenaga](http://www.hitz.eus/es/node/65) and [Rodrigo Agerri](https://ragerri.github.io/)
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HiTZ Center - Ixa, University of the Basque Country UPV/EHU
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### Model Description
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- 馃摉 **Paper**:[Explanatory Argument Extraction of Correct Answers in Resident Medical Exams](https://arxiv.org/abs/2312.00567)
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- 馃捇 **Github Repo** (Data and Code): [https://github.com/ixa-ehu/antidote-casimedicos](https://github.com/ixa-ehu/antidote-casimedicos)
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- 馃寪 **Project Website**: [https://univ-cotedazur.eu/antidote](https://univ-cotedazur.eu/antidote)
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- **Funding**: CHIST-ERA XAI 2019 call. Antidote (PCI2020-120717-2) funded by MCIN/AEI /10.13039/501100011033 and by European Union NextGenerationEU/PRTR
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- **Language(s) (NLP):** EN,ES,FR,IT
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- **License:** Apache License 2
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- **Finetuned from model:** microsoft/mdeberta-v3-base
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## Uses
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<!-- Address questions around how the model is intended to be used, including the foreseeable users of the model and those affected by the model. -->
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### Direct Use
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<!-- This section is for the model use without fine-tuning or plugging into a larger ecosystem/app. -->
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[More Information Needed]
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### Downstream Use [optional]
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<!-- This section is for the model use when fine-tuned for a task, or when plugged into a larger ecosystem/app -->
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[More Information Needed]
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### Out-of-Scope Use
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<!-- This section addresses misuse, malicious use, and uses that the model will not work well for. -->
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[More Information Needed]
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## Bias, Risks, and Limitations
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<!-- This section is meant to convey both technical and sociotechnical limitations. -->
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[More Information Needed]
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### Recommendations
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<!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
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Users (both direct and downstream) should be made aware of the risks, biases and limitations of the model. More information needed for further recommendations.
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## How to Get Started with the Model
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Use the code below to get started with the model.
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[More Information Needed]
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## Training Details
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### Training Data
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<!-- This should link to a Dataset Card, perhaps with a short stub of information on what the training data is all about as well as documentation related to data pre-processing or additional filtering. -->
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[More Information Needed]
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### Training Procedure
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<!-- This relates heavily to the Technical Specifications. Content here should link to that section when it is relevant to the training procedure. -->
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#### Preprocessing [optional]
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[More Information Needed]
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#### Training Hyperparameters
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- **Training regime:** [More Information Needed] <!--fp32, fp16 mixed precision, bf16 mixed precision, bf16 non-mixed precision, fp16 non-mixed precision, fp8 mixed precision -->
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#### Speeds, Sizes, Times [optional]
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<!-- This section provides information about throughput, start/end time, checkpoint size if relevant, etc. -->
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[More Information Needed]
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## Evaluation
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<!-- This section describes the evaluation protocols and provides the results. -->
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### Testing Data, Factors & Metrics
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#### Testing Data
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<!-- This should link to a Dataset Card if possible. -->
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[More Information Needed]
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#### Factors
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<!-- These are the things the evaluation is disaggregating by, e.g., subpopulations or domains. -->
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[More Information Needed]
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#### Metrics
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<!-- These are the evaluation metrics being used, ideally with a description of why. -->
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[More Information Needed]
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### Results
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[More Information Needed]
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#### Summary
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## Model Examination [optional]
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<!-- Relevant interpretability work for the model goes here -->
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[More Information Needed]
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## Environmental Impact
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<!-- Total emissions (in grams of CO2eq) and additional considerations, such as electricity usage, go here. Edit the suggested text below accordingly -->
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Carbon emissions can be estimated using the [Machine Learning Impact calculator](https://mlco2.github.io/impact#compute) presented in [Lacoste et al. (2019)](https://arxiv.org/abs/1910.09700).
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- **Hardware Type:** [More Information Needed]
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- **Hours used:** [More Information Needed]
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- **Cloud Provider:** [More Information Needed]
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- **Compute Region:** [More Information Needed]
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- **Carbon Emitted:** [More Information Needed]
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## Technical Specifications [optional]
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### Model Architecture and Objective
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[More Information Needed]
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### Compute Infrastructure
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[More Information Needed]
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#### Hardware
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[More Information Needed]
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#### Software
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[More Information Needed]
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## Citation [optional]
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<!-- If there is a paper or blog post introducing the model, the APA and Bibtex information for that should go in this section. -->
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**BibTeX:**
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[More Information Needed]
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**APA:**
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[More Information Needed]
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## Glossary [optional]
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<!-- If relevant, include terms and calculations in this section that can help readers understand the model or model card. -->
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[More Information Needed]
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## More Information [optional]
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[More Information Needed]
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## Model Card Authors [optional]
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[More Information Needed]
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## Model Card Contact
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[More Information Needed]
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