Delete example.py

example.py

@@ -1,74 +0,0 @@
-"""
-Simple example of using Sybil for lung cancer risk prediction
-"""
-
-import sys
-import os
-
-# Install required packages if needed
-# !pip install torch torchvision transformers pydicom torchio sybil
-
-# Import the model
-from modeling_sybil_wrapper import SybilHFWrapper
-from configuration_sybil import SybilConfig
-
-def predict_cancer_risk(dicom_paths):
-    """
-    Predict lung cancer risk from DICOM files.
-
-    Args:
-        dicom_paths: List of paths to DICOM files from a CT scan
-
-    Returns:
-        Risk scores for years 1-6
-    """
-    # Load model
-    print("Loading Sybil model...")
-    config = SybilConfig()
-    model = SybilHFWrapper.from_pretrained("Lab-Rasool/sybil")
-
-    # Run prediction
-    print(f"Processing {len(dicom_paths)} DICOM files...")
-    output = model(dicom_paths=dicom_paths, return_attentions=False)
-
-    # Extract risk scores
-    risk_scores = output.risk_scores.numpy()
-
-    return risk_scores
-
-
-def main():
-    # Example usage with demo data
-    # In practice, replace with actual DICOM file paths
-    demo_dicom_paths = [
-        "path/to/slice001.dcm",
-        "path/to/slice002.dcm",
-        # ... more slices
-    ]
-
-    # For testing, you can download demo data:
-    # Download from: https://github.com/reginabarzilaygroup/Sybil
-
-    print("=" * 50)
-    print("Sybil Lung Cancer Risk Prediction")
-    print("=" * 50)
-
-    # Uncomment when you have actual DICOM files:
-    # risk_scores = predict_cancer_risk(demo_dicom_paths)
-
-    # Print results
-    # print("\nLung Cancer Risk Predictions:")
-    # print("-" * 30)
-    # for year, score in enumerate(risk_scores, 1):
-    #     risk_pct = score * 100
-    #     print(f"Year {year}: {risk_pct:.2f}% risk")
-
-    print("\nNote: This example requires actual DICOM files.")
-    print("Please provide paths to LDCT scan DICOM files.")
-    print("\nFor more information:")
-    print("- Original paper: https://doi.org/10.1200/JCO.22.01345")
-    print("- GitHub: https://github.com/reginabarzilaygroup/Sybil")
-
-
-if __name__ == "__main__":
-    main()