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  1. H&E+IHC_AC_BCE/model_instance_1/config.json +1 -0
  2. H&E+IHC_AC_BCE/model_instance_1/model_state_dict.tar +3 -0
  3. H&E+IHC_AC_BCE/model_instance_2/config.json +1 -0
  4. H&E+IHC_AC_BCE/model_instance_2/model_state_dict.tar +3 -0
  5. H&E+IHC_AC_BCE/model_instance_3/config.json +1 -0
  6. H&E+IHC_AC_BCE/model_instance_3/model_state_dict.tar +3 -0
  7. H&E+IHC_AC_BCE/model_instance_4/config.json +1 -0
  8. H&E+IHC_AC_BCE/model_instance_4/model_state_dict.tar +3 -0
  9. H&E+IHC_AC_BCE/model_instance_5/config.json +1 -0
  10. H&E+IHC_AC_BCE/model_instance_5/model_state_dict.tar +3 -0
  11. H&E+IHC_AC_CCE/model_instance_1/config.json +1 -0
  12. H&E+IHC_AC_CCE/model_instance_1/model_state_dict.tar +3 -0
  13. H&E+IHC_AC_CCE/model_instance_2/config.json +1 -0
  14. H&E+IHC_AC_CCE/model_instance_2/model_state_dict.tar +3 -0
  15. H&E+IHC_AC_CCE/model_instance_3/config.json +1 -0
  16. H&E+IHC_AC_CCE/model_instance_3/model_state_dict.tar +3 -0
  17. H&E+IHC_AC_CCE/model_instance_4/config.json +1 -0
  18. H&E+IHC_AC_CCE/model_instance_4/model_state_dict.tar +3 -0
  19. H&E+IHC_AC_CCE/model_instance_5/config.json +1 -0
  20. H&E+IHC_AC_CCE/model_instance_5/model_state_dict.tar +3 -0
  21. H&E+IHC_AR_CS/model_instance_1/config.json +1 -0
  22. H&E+IHC_AR_CS/model_instance_1/model_state_dict.tar +3 -0
  23. H&E+IHC_AR_CS/model_instance_2/config.json +1 -0
  24. H&E+IHC_AR_CS/model_instance_2/model_state_dict.tar +3 -0
  25. H&E+IHC_AR_CS/model_instance_3/config.json +1 -0
  26. H&E+IHC_AR_CS/model_instance_3/model_state_dict.tar +3 -0
  27. H&E+IHC_AR_CS/model_instance_4/config.json +1 -0
  28. H&E+IHC_AR_CS/model_instance_4/model_state_dict.tar +3 -0
  29. H&E+IHC_AR_CS/model_instance_5/config.json +1 -0
  30. H&E+IHC_AR_CS/model_instance_5/model_state_dict.tar +3 -0
  31. H&E+IHC_CR_CS/model_instance_1/config.json +51 -0
  32. H&E+IHC_CR_CS/model_instance_1/model_state_dict.tar +3 -0
  33. H&E+IHC_CR_CS/model_instance_2/config.json +1 -0
  34. H&E+IHC_CR_CS/model_instance_2/model_state_dict.tar +3 -0
  35. H&E+IHC_CR_CS/model_instance_3/config.json +1 -0
  36. H&E+IHC_CR_CS/model_instance_3/model_state_dict.tar +3 -0
  37. H&E+IHC_CR_CS/model_instance_4/config.json +1 -0
  38. H&E+IHC_CR_CS/model_instance_4/model_state_dict.tar +3 -0
  39. H&E+IHC_CR_CS/model_instance_5/config.json +1 -0
  40. H&E+IHC_CR_CS/model_instance_5/model_state_dict.tar +3 -0
  41. H&E+IHC_CR_MAE/model_instance_1/config.json +1 -0
  42. H&E+IHC_CR_MAE/model_instance_1/model_state_dict.tar +3 -0
  43. H&E+IHC_CR_MAE/model_instance_2/config.json +1 -0
  44. H&E+IHC_CR_MAE/model_instance_2/model_state_dict.tar +3 -0
  45. H&E+IHC_CR_MAE/model_instance_3/config.json +1 -0
  46. H&E+IHC_CR_MAE/model_instance_3/model_state_dict.tar +3 -0
  47. H&E+IHC_CR_MAE/model_instance_4/config.json +1 -0
  48. H&E+IHC_CR_MAE/model_instance_4/model_state_dict.tar +3 -0
  49. H&E+IHC_CR_MAE/model_instance_5/config.json +1 -0
  50. H&E+IHC_CR_MAE/model_instance_5/model_state_dict.tar +3 -0
H&E+IHC_AC_BCE/model_instance_1/config.json ADDED
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