diff --git a/data/files/A000Z/project.json b/data/files/A000Z/project.json new file mode 100644 index 0000000000000000000000000000000000000000..a6d697639a7409be53f5e00048c2b6c2a7a73eb5 --- /dev/null +++ b/data/files/A000Z/project.json @@ -0,0 +1,344 @@ +{ + "accession": "A000Z", + "published": true, + "metadata": { + "NAME": "Dynarepo 1I5K", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1I5K" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P00747", + "P49054" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "EKLTADAELQRLKNERHEEAELERLK", + "EECMHGSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRDLRPWCFTTDPNKRWEYCDIPRC", + "ECMHGSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRDLRPWCFTTDPNKRWEYCDIPRC" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Plasminogen", + "Plasmin heavy chain A", + "Angiostatin", + "Plasmin heavy chain A, short form", + "Kringle 2", + "Plasminogen-binding group A streptococcal M-like protein PAM", + "Able to bind plasminogen", + "2 X approximate tandem repeats, type a", + "Disordered" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 3391, + "SYSTRES": 211, + "PROTATS": 3391, + "PROTRES": 211, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "protein-protein interaction C-B", + "agent_1": "protein C", + "agent_2": "protein B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction C-D", + "agent_1": "protein C", + "agent_2": "protein D", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction C-A", + "agent_1": "protein C", + "agent_2": "protein A", + "selection_1": "chain A", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction B-D", + "agent_1": "protein B", + "agent_2": "protein D", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction B-A", + "agent_1": "protein B", + "agent_2": "protein A", + "selection_1": "chain B", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction D-A", + "agent_1": "protein D", + "agent_2": "protein A", + "selection_1": "chain C", + "selection_2": "chain D", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 9.13395, + "BOXSIZEY": 9.13395, + "BOXSIZEZ": 6.42953, + "mdName": "replica 1", + "mdAtoms": 3391, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_01_screenshot_20.jpg", + "clusters_01_screenshot_21.jpg", + "clusters_01_screenshot_22.jpg", + "clusters_01_screenshot_23.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_02_screenshot_18.jpg", + "clusters_02_screenshot_19.jpg", + "clusters_02_screenshot_20.jpg", + "clusters_02_screenshot_21.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "clusters_03_screenshot_20.jpg", + "clusters_04_screenshot_00.jpg", + "clusters_04_screenshot_01.jpg", + "clusters_04_screenshot_02.jpg", + "clusters_04_screenshot_03.jpg", + "clusters_04_screenshot_04.jpg", + "clusters_04_screenshot_05.jpg", + "clusters_04_screenshot_06.jpg", + "clusters_04_screenshot_07.jpg", + "clusters_04_screenshot_08.jpg", + "clusters_04_screenshot_09.jpg", + "clusters_04_screenshot_10.jpg", + "clusters_04_screenshot_11.jpg", + "clusters_04_screenshot_12.jpg", + "clusters_04_screenshot_13.jpg", + "clusters_04_screenshot_14.jpg", + "clusters_04_screenshot_15.jpg", + "clusters_04_screenshot_16.jpg", + "clusters_04_screenshot_17.jpg", + "clusters_04_screenshot_18.jpg", + "clusters_04_screenshot_19.jpg", + "clusters_04_screenshot_20.jpg", + "clusters_05_screenshot_00.jpg", + "clusters_05_screenshot_01.jpg", + "clusters_05_screenshot_02.jpg", + "clusters_05_screenshot_03.jpg", + "clusters_05_screenshot_04.jpg", + "clusters_05_screenshot_05.jpg", + "clusters_05_screenshot_06.jpg", + "clusters_05_screenshot_07.jpg", + "clusters_05_screenshot_08.jpg", + "clusters_05_screenshot_09.jpg", + "clusters_05_screenshot_10.jpg", + "clusters_05_screenshot_11.jpg", + "clusters_05_screenshot_12.jpg", + "clusters_05_screenshot_13.jpg", + "clusters_05_screenshot_14.jpg", + "clusters_05_screenshot_15.jpg", + "clusters_05_screenshot_16.jpg", + "clusters_05_screenshot_17.jpg", + "clusters_05_screenshot_18.jpg", + "clusters_05_screenshot_19.jpg", + "clusters_05_screenshot_20.jpg", + "clusters_05_screenshot_21.jpg", + "clusters_05_screenshot_22.jpg", + "clusters_05_screenshot_23.jpg", + "clusters_06_screenshot_00.jpg", + "clusters_06_screenshot_01.jpg", + "clusters_06_screenshot_02.jpg", + "clusters_06_screenshot_03.jpg", + "clusters_06_screenshot_04.jpg", + "clusters_06_screenshot_05.jpg", + "clusters_06_screenshot_06.jpg", + "clusters_06_screenshot_07.jpg", + "clusters_06_screenshot_08.jpg", + "clusters_06_screenshot_09.jpg", + "clusters_06_screenshot_10.jpg", + "clusters_06_screenshot_11.jpg", + "clusters_06_screenshot_12.jpg", + "clusters_06_screenshot_13.jpg", + "clusters_06_screenshot_14.jpg", + "clusters_06_screenshot_15.jpg", + "clusters_06_screenshot_16.jpg", + "clusters_06_screenshot_17.jpg", + "clusters_06_screenshot_18.jpg", + "clusters_06_screenshot_19.jpg", + "clusters_06_screenshot_20.jpg", + "clusters_06_screenshot_21.jpg", + "clusters_06_screenshot_22.jpg", + "clusters_06_screenshot_23.jpg" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "clusters-04", + "clusters-05", + "clusters-06", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f32e0c2e0ade273d7fd0f", + "creationDate": "2025-06-03T17:37:36.000Z", + "identifier": "A000Z" +} \ No newline at end of file diff --git a/data/files/A000Z/records.jsonl b/data/files/A000Z/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..3153b1d90fdac8ce8f7c3c4ccd2d5bd09b9155b8 --- /dev/null +++ b/data/files/A000Z/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A000Z", "accession": "A000Z", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "clusters-06", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1I5K", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1I5K"], "FORCED_REFERENCES": null, "REFERENCES": ["P00747", "P49054"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["EKLTADAELQRLKNERHEEAELERLK", "EECMHGSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRDLRPWCFTTDPNKRWEYCDIPRC", "ECMHGSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRDLRPWCFTTDPNKRWEYCDIPRC"], "NUCLSEQ": [], "DOMAINS": ["Plasminogen", "Plasmin heavy chain A", "Angiostatin", "Plasmin heavy chain A, short form", "Kringle 2", "Plasminogen-binding group A streptococcal M-like protein PAM", "Able to bind plasminogen", "2 X approximate tandem repeats, type a", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3391, "SYSTRES": 211, "PROTATS": 3391, "PROTRES": 211, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction C-B", "agent_1": "protein C", "agent_2": "protein B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction C-D", "agent_1": "protein C", "agent_2": "protein D", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction C-A", "agent_1": "protein C", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction B-D", "agent_1": "protein B", "agent_2": "protein D", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction D-A", "agent_1": "protein D", "agent_2": "protein A", "selection_1": "chain C", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.13395, "BOXSIZEY": 9.13395, "BOXSIZEZ": 6.42953, "mdName": "replica 1", "mdAtoms": 3391, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A000Z/files/topology.tpr", "length": 1245840, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A000Z/files/screenshot.jpg", "length": 21113, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A000Z/files/trajectory.bin", "length": 203500692, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 5001, "atoms": 3391}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A000Z/files/pca_trajectory_01.bin", "length": 151920, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 20, "atoms": 633}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A000Z/files/pca_trajectory_02.bin", "length": 151920, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 20, "atoms": 633}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A000Z/files/pca_trajectory_03.bin", "length": 151920, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 20, "atoms": 633}}, {"name": "structure.pdb", "downloadUrl": "/projects/A000Z/files/structure.pdb", "length": 274706, "contentType": "chemical/x-pdb", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A000Z/files/trajectory.xtc", "length": 65490824, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_00.jpg", "length": 19520, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_01.jpg", "length": 15396, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_02.jpg", "length": 11253, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_03.jpg", "length": 5653, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_04.jpg", "length": 4456, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_05.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_07.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_00.jpg", "length": 18331, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_01.jpg", "length": 17910, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_02.jpg", "length": 14281, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_03.jpg", "length": 17324, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_04.jpg", "length": 7529, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_05.jpg", "length": 7583, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_06.jpg", "length": 5463, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_07.jpg", "length": 2672, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_22.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_22.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_23.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_23.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_00.jpg", "length": 17793, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_01.jpg", "length": 16447, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_02.jpg", "length": 12584, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_03.jpg", "length": 5517, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_04.jpg", "length": 3754, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_05.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_07.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_00.jpg", "length": 4419, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_01.jpg", "length": 4611, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_02.jpg", "length": 4486, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_03.jpg", "length": 4471, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_04.jpg", "length": 4443, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_05.jpg", "length": 4423, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_06.jpg", "length": 4548, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_07.jpg", "length": 4426, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_08.jpg", "length": 4627, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_09.jpg", "length": 4352, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_10.jpg", "length": 4456, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_11.jpg", "length": 4485, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_12.jpg", "length": 4574, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_13.jpg", "length": 4581, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_14.jpg", "length": 4520, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_15.jpg", "length": 4576, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_16.jpg", "length": 4576, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_17.jpg", "length": 4669, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_18.jpg", "length": 4570, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_19.jpg", "length": 4372, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_20.jpg", "length": 4381, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_00.jpg", "length": 20590, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_01.jpg", "length": 19651, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_02.jpg", "length": 20234, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_03.jpg", "length": 19983, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_04.jpg", "length": 20491, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_05.jpg", "length": 2966, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_07.jpg", "length": 3962, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_08.jpg", "length": 2622, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_00.jpg", "length": 19459, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_01.jpg", "length": 17411, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_02.jpg", "length": 17420, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_03.jpg", "length": 12505, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_04.jpg", "length": 7240, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_05.jpg", "length": 6275, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_06.jpg", "length": 3145, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_07.jpg", "length": 6843, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_22.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_22.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_23.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_23.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_00.jpg", "length": 19506, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_01.jpg", "length": 16125, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_02.jpg", "length": 10718, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_03.jpg", "length": 7148, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_04.jpg", "length": 3487, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_05.jpg", "length": 6391, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_07.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_22.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_22.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_23.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_23.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}]} +{"project_identifier": "A000Z", "accession": "A000Z", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "clusters-06", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1I5K", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1I5K"], "FORCED_REFERENCES": null, "REFERENCES": ["P00747", "P49054"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["EKLTADAELQRLKNERHEEAELERLK", "EECMHGSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRDLRPWCFTTDPNKRWEYCDIPRC", "ECMHGSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRDLRPWCFTTDPNKRWEYCDIPRC"], "NUCLSEQ": [], "DOMAINS": ["Plasminogen", "Plasmin heavy chain A", "Angiostatin", "Plasmin heavy chain A, short form", "Kringle 2", "Plasminogen-binding group A streptococcal M-like protein PAM", "Able to bind plasminogen", "2 X approximate tandem repeats, type a", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3391, "SYSTRES": 211, "PROTATS": 3391, "PROTRES": 211, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction C-B", "agent_1": "protein C", "agent_2": "protein B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction C-D", "agent_1": "protein C", "agent_2": "protein D", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction C-A", "agent_1": "protein C", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction B-D", "agent_1": "protein B", "agent_2": "protein D", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction D-A", "agent_1": "protein D", "agent_2": "protein A", "selection_1": "chain C", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.13395, "BOXSIZEY": 9.13395, "BOXSIZEZ": 6.42953, "mdName": "replica 1", "mdAtoms": 3391, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A000Z/files/topology.tpr", "length": 1245840, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A000Z/files/screenshot.jpg", "length": 21113, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A000Z/files/trajectory.bin", "length": 203500692, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 5001, "atoms": 3391}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A000Z/files/pca_trajectory_01.bin", "length": 151920, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 20, "atoms": 633}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A000Z/files/pca_trajectory_02.bin", "length": 151920, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 20, "atoms": 633}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A000Z/files/pca_trajectory_03.bin", "length": 151920, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 20, "atoms": 633}}, {"name": "structure.pdb", "downloadUrl": "/projects/A000Z/files/structure.pdb", "length": 274706, "contentType": "chemical/x-pdb", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A000Z/files/trajectory.xtc", "length": 65490824, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_00.jpg", "length": 19520, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_01.jpg", "length": 15396, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_02.jpg", "length": 11253, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_03.jpg", "length": 5653, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_04.jpg", "length": 4456, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_05.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_07.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_00.jpg", "length": 18331, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_01.jpg", "length": 17910, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_02.jpg", "length": 14281, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_03.jpg", "length": 17324, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_04.jpg", "length": 7529, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_05.jpg", "length": 7583, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_06.jpg", "length": 5463, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_07.jpg", "length": 2672, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_22.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_22.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_23.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_23.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_00.jpg", "length": 17793, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_01.jpg", "length": 16447, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_02.jpg", "length": 12584, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_03.jpg", "length": 5517, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_04.jpg", "length": 3754, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_05.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_07.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_00.jpg", "length": 4419, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_01.jpg", "length": 4611, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_02.jpg", "length": 4486, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_03.jpg", "length": 4471, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_04.jpg", "length": 4443, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_05.jpg", "length": 4423, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_06.jpg", "length": 4548, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_07.jpg", "length": 4426, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_08.jpg", "length": 4627, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_09.jpg", "length": 4352, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_10.jpg", "length": 4456, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_11.jpg", "length": 4485, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_12.jpg", "length": 4574, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_13.jpg", "length": 4581, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_14.jpg", "length": 4520, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_15.jpg", "length": 4576, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_16.jpg", "length": 4576, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_17.jpg", "length": 4669, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_18.jpg", "length": 4570, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_19.jpg", "length": 4372, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_20.jpg", "length": 4381, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_00.jpg", "length": 20590, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_01.jpg", "length": 19651, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_02.jpg", "length": 20234, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_03.jpg", "length": 19983, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_04.jpg", "length": 20491, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_05.jpg", "length": 2966, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_07.jpg", "length": 3962, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_08.jpg", "length": 2622, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_00.jpg", "length": 19459, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_01.jpg", "length": 17411, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_02.jpg", "length": 17420, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_03.jpg", "length": 12505, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_04.jpg", "length": 7240, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_05.jpg", "length": 6275, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_06.jpg", "length": 3145, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_07.jpg", "length": 6843, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_22.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_22.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_23.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_23.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_00.jpg", "length": 19506, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_01.jpg", "length": 16125, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_02.jpg", "length": 10718, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_03.jpg", "length": 7148, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_04.jpg", "length": 3487, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_05.jpg", "length": 6391, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_07.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_22.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_22.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_23.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_23.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}]} +{"project_identifier": "A000Z", "accession": "A000Z", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "clusters-06", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1I5K", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1I5K"], "FORCED_REFERENCES": null, "REFERENCES": ["P00747", "P49054"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["EKLTADAELQRLKNERHEEAELERLK", "EECMHGSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRDLRPWCFTTDPNKRWEYCDIPRC", "ECMHGSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRDLRPWCFTTDPNKRWEYCDIPRC"], "NUCLSEQ": [], "DOMAINS": ["Plasminogen", "Plasmin heavy chain A", "Angiostatin", "Plasmin heavy chain A, short form", "Kringle 2", "Plasminogen-binding group A streptococcal M-like protein PAM", "Able to bind plasminogen", "2 X approximate tandem repeats, type a", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3391, "SYSTRES": 211, "PROTATS": 3391, "PROTRES": 211, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction C-B", "agent_1": "protein C", "agent_2": "protein B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction C-D", "agent_1": "protein C", "agent_2": "protein D", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction C-A", "agent_1": "protein C", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction B-D", "agent_1": "protein B", "agent_2": "protein D", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction D-A", "agent_1": "protein D", "agent_2": "protein A", "selection_1": "chain C", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.13395, "BOXSIZEY": 9.13395, "BOXSIZEZ": 6.42953, "mdName": "replica 1", "mdAtoms": 3391, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A000Z/files/topology.tpr", "length": 1245840, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A000Z/files/screenshot.jpg", "length": 21113, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A000Z/files/trajectory.bin", "length": 203500692, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 5001, "atoms": 3391}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A000Z/files/pca_trajectory_01.bin", "length": 151920, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 20, "atoms": 633}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A000Z/files/pca_trajectory_02.bin", "length": 151920, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 20, "atoms": 633}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A000Z/files/pca_trajectory_03.bin", "length": 151920, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0, "frames": 20, "atoms": 633}}, {"name": "structure.pdb", "downloadUrl": "/projects/A000Z/files/structure.pdb", "length": 274706, "contentType": "chemical/x-pdb", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A000Z/files/trajectory.xtc", "length": 65490824, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_00.jpg", "length": 19520, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_01.jpg", "length": 15396, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_02.jpg", "length": 11253, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_03.jpg", "length": 5653, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_04.jpg", "length": 4456, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_05.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_07.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_00_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_00.jpg", "length": 18331, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_01.jpg", "length": 17910, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_02.jpg", "length": 14281, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_03.jpg", "length": 17324, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_04.jpg", "length": 7529, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_05.jpg", "length": 7583, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_06.jpg", "length": 5463, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_07.jpg", "length": 2672, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_22.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_22.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_01_screenshot_23.jpg", "downloadUrl": "/projects/A000Z/files/clusters_01_screenshot_23.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_00.jpg", "length": 17793, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_01.jpg", "length": 16447, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_02.jpg", "length": 12584, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_03.jpg", "length": 5517, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_04.jpg", "length": 3754, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_05.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_07.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_02_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_02_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_00.jpg", "length": 4419, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_01.jpg", "length": 4611, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_02.jpg", "length": 4486, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_03.jpg", "length": 4471, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_04.jpg", "length": 4443, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_05.jpg", "length": 4423, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_06.jpg", "length": 4548, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_07.jpg", "length": 4426, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_08.jpg", "length": 4627, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_09.jpg", "length": 4352, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_10.jpg", "length": 4456, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_11.jpg", "length": 4485, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_12.jpg", "length": 4574, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_13.jpg", "length": 4581, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_14.jpg", "length": 4520, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_15.jpg", "length": 4576, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_16.jpg", "length": 4576, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_17.jpg", "length": 4669, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_18.jpg", "length": 4570, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_19.jpg", "length": 4372, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_03_screenshot_20.jpg", "length": 4381, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_00.jpg", "length": 20590, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_01.jpg", "length": 19651, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_02.jpg", "length": 20234, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_03.jpg", "length": 19983, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_04.jpg", "length": 20491, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_05.jpg", "length": 2966, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_07.jpg", "length": 3962, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_08.jpg", "length": 2622, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_04_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_00.jpg", "length": 19459, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_01.jpg", "length": 17411, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_02.jpg", "length": 17420, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_03.jpg", "length": 12505, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_04.jpg", "length": 7240, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_05.jpg", "length": 6275, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_06.jpg", "length": 3145, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_07.jpg", "length": 6843, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_22.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_22.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_05_screenshot_23.jpg", "downloadUrl": "/projects/A000Z/files/clusters_05_screenshot_23.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_00.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_00.jpg", "length": 19506, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_01.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_01.jpg", "length": 16125, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_02.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_02.jpg", "length": 10718, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_03.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_03.jpg", "length": 7148, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_04.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_04.jpg", "length": 3487, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_05.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_05.jpg", "length": 6391, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_06.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_06.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_07.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_07.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_08.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_08.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_09.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_09.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_10.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_10.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_11.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_11.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_12.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_12.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_13.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_13.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_14.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_14.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_15.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_15.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_16.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_16.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_17.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_17.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_18.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_18.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_19.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_19.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_20.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_20.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_21.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_21.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_22.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_22.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}, {"name": "clusters_06_screenshot_23.jpg", "downloadUrl": "/projects/A000Z/files/clusters_06_screenshot_23.jpg", "length": 2563, "contentType": "application/octet-stream", "metadata": {"project": "683f32e0c2e0ade273d7fd0f", "md": 0}}]} diff --git a/data/files/A0010/project.json b/data/files/A0010/project.json new file mode 100644 index 0000000000000000000000000000000000000000..92fe0c1c0691a6b44a22faf2651490083e8f93cd --- /dev/null +++ b/data/files/A0010/project.json @@ -0,0 +1,194 @@ +{ + "accession": "A0010", + "published": true, + "metadata": { + "NAME": "Dynarepo 1I8L", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1I8L" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P33681", + "P16410" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNT", + "MHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGAQIYVIDPE" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "T-lymphocyte activation antigen CD80", + "Ig-like V-type", + "Ig-like C2-type", + "Cytotoxic T-lymphocyte protein 4", + "Ig-like V-type", + "Homodimerization", + "Important for interaction with CD80 and CD86" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 4924, + "SYSTRES": 317, + "PROTATS": 4924, + "PROTRES": 317, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "protein-protein interaction B-A", + "agent_1": "protein B", + "agent_2": "protein A", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 13.7904, + "BOXSIZEY": 13.7904, + "BOXSIZEZ": 9.74004, + "mdName": "replica 1", + "mdAtoms": 4924, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_00_screenshot_21.jpg", + "clusters_00_screenshot_22.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_01_screenshot_20.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f340e292ec74fa9ce7b1c", + "creationDate": "2025-06-03T17:42:38.000Z", + "identifier": "A0010" +} \ No newline at end of file diff --git a/data/files/A0010/records.jsonl b/data/files/A0010/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..4ca49143dce4df12f0e501581d2f17f9ee3bf7d8 --- /dev/null +++ b/data/files/A0010/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A0010", "accession": "A0010", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1I8L", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1I8L"], "FORCED_REFERENCES": null, "REFERENCES": ["P33681", "P16410"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNT", "MHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGAQIYVIDPE"], "NUCLSEQ": [], "DOMAINS": ["T-lymphocyte activation antigen CD80", "Ig-like V-type", "Ig-like C2-type", "Cytotoxic T-lymphocyte protein 4", "Ig-like V-type", "Homodimerization", "Important for interaction with CD80 and CD86"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4924, "SYSTRES": 317, "PROTATS": 4924, "PROTRES": 317, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 13.7904, "BOXSIZEY": 13.7904, "BOXSIZEZ": 9.74004, "mdName": "replica 1", "mdAtoms": 4924, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0010/files/topology.tpr", "length": 1885660, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0010/files/screenshot.jpg", "length": 17331, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0010/files/trajectory.bin", "length": 295499088, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 5001, "atoms": 4924}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_01.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_02.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_03.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_04.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_05.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_06.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_07.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_08.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_09.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0010/files/structure.pdb", "length": 398879, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0010/files/trajectory.xtc", "length": 93729664, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_00.jpg", "length": 16800, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_01.jpg", "length": 16898, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_02.jpg", "length": 16750, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_03.jpg", "length": 16747, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_04.jpg", "length": 16786, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_05.jpg", "length": 16884, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_06.jpg", "length": 16906, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_07.jpg", "length": 16821, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_08.jpg", "length": 16931, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_09.jpg", "length": 16783, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_10.jpg", "length": 16594, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_11.jpg", "length": 16962, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_12.jpg", "length": 17113, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_13.jpg", "length": 17071, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_14.jpg", "length": 16447, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_15.jpg", "length": 16663, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_16.jpg", "length": 16967, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_17.jpg", "length": 16885, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_18.jpg", "length": 16621, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_19.jpg", "length": 16555, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_20.jpg", "length": 16864, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_21.jpg", "length": 16371, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_22.jpg", "length": 16992, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_00.jpg", "length": 16880, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_01.jpg", "length": 16642, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_02.jpg", "length": 16730, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_03.jpg", "length": 16843, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_04.jpg", "length": 16761, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_05.jpg", "length": 16567, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_06.jpg", "length": 16641, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_07.jpg", "length": 16891, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_08.jpg", "length": 16972, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_09.jpg", "length": 16624, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_10.jpg", "length": 16943, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_11.jpg", "length": 16915, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_12.jpg", "length": 16692, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_13.jpg", "length": 16706, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_14.jpg", "length": 16948, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_15.jpg", "length": 16558, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_16.jpg", "length": 16705, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_17.jpg", "length": 16932, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_18.jpg", "length": 16717, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_19.jpg", "length": 16821, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_20.jpg", "length": 16364, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0010/files/pocket_01.pdb", "length": 7973, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0010/files/pocket_02.pdb", "length": 7839, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0010/files/pocket_03.pdb", "length": 7035, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0010/files/pocket_04.pdb", "length": 4623, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}]} +{"project_identifier": "A0010", "accession": "A0010", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1I8L", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1I8L"], "FORCED_REFERENCES": null, "REFERENCES": ["P33681", "P16410"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNT", "MHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGAQIYVIDPE"], "NUCLSEQ": [], "DOMAINS": ["T-lymphocyte activation antigen CD80", "Ig-like V-type", "Ig-like C2-type", "Cytotoxic T-lymphocyte protein 4", "Ig-like V-type", "Homodimerization", "Important for interaction with CD80 and CD86"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4924, "SYSTRES": 317, "PROTATS": 4924, "PROTRES": 317, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 13.7904, "BOXSIZEY": 13.7904, "BOXSIZEZ": 9.74004, "mdName": "replica 1", "mdAtoms": 4924, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0010/files/topology.tpr", "length": 1885660, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0010/files/screenshot.jpg", "length": 17331, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0010/files/trajectory.bin", "length": 295499088, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 5001, "atoms": 4924}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_01.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_02.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_03.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_04.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_05.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_06.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_07.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_08.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_09.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0010/files/structure.pdb", "length": 398879, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0010/files/trajectory.xtc", "length": 93729664, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_00.jpg", "length": 16800, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_01.jpg", "length": 16898, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_02.jpg", "length": 16750, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_03.jpg", "length": 16747, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_04.jpg", "length": 16786, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_05.jpg", "length": 16884, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_06.jpg", "length": 16906, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_07.jpg", "length": 16821, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_08.jpg", "length": 16931, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_09.jpg", "length": 16783, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_10.jpg", "length": 16594, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_11.jpg", "length": 16962, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_12.jpg", "length": 17113, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_13.jpg", "length": 17071, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_14.jpg", "length": 16447, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_15.jpg", "length": 16663, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_16.jpg", "length": 16967, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_17.jpg", "length": 16885, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_18.jpg", "length": 16621, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_19.jpg", "length": 16555, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_20.jpg", "length": 16864, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_21.jpg", "length": 16371, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_22.jpg", "length": 16992, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_00.jpg", "length": 16880, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_01.jpg", "length": 16642, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_02.jpg", "length": 16730, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_03.jpg", "length": 16843, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_04.jpg", "length": 16761, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_05.jpg", "length": 16567, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_06.jpg", "length": 16641, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_07.jpg", "length": 16891, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_08.jpg", "length": 16972, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_09.jpg", "length": 16624, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_10.jpg", "length": 16943, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_11.jpg", "length": 16915, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_12.jpg", "length": 16692, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_13.jpg", "length": 16706, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_14.jpg", "length": 16948, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_15.jpg", "length": 16558, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_16.jpg", "length": 16705, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_17.jpg", "length": 16932, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_18.jpg", "length": 16717, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_19.jpg", "length": 16821, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_20.jpg", "length": 16364, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0010/files/pocket_01.pdb", "length": 7973, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0010/files/pocket_02.pdb", "length": 7839, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0010/files/pocket_03.pdb", "length": 7035, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0010/files/pocket_04.pdb", "length": 4623, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}]} +{"project_identifier": "A0010", "accession": "A0010", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1I8L", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1I8L"], "FORCED_REFERENCES": null, "REFERENCES": ["P33681", "P16410"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNT", "MHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGAQIYVIDPE"], "NUCLSEQ": [], "DOMAINS": ["T-lymphocyte activation antigen CD80", "Ig-like V-type", "Ig-like C2-type", "Cytotoxic T-lymphocyte protein 4", "Ig-like V-type", "Homodimerization", "Important for interaction with CD80 and CD86"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4924, "SYSTRES": 317, "PROTATS": 4924, "PROTRES": 317, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 13.7904, "BOXSIZEY": 13.7904, "BOXSIZEZ": 9.74004, "mdName": "replica 1", "mdAtoms": 4924, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0010/files/topology.tpr", "length": 1885660, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0010/files/screenshot.jpg", "length": 17331, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0010/files/trajectory.bin", "length": 295499088, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 5001, "atoms": 4924}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_01.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_02.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_03.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_04.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_05.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_06.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_07.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_08.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0010/files/pca_trajectory_09.bin", "length": 228240, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0, "frames": 20, "atoms": 951}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0010/files/structure.pdb", "length": 398879, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0010/files/trajectory.xtc", "length": 93729664, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_00.jpg", "length": 16800, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_01.jpg", "length": 16898, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_02.jpg", "length": 16750, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_03.jpg", "length": 16747, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_04.jpg", "length": 16786, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_05.jpg", "length": 16884, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_06.jpg", "length": 16906, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_07.jpg", "length": 16821, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_08.jpg", "length": 16931, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_09.jpg", "length": 16783, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_10.jpg", "length": 16594, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_11.jpg", "length": 16962, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_12.jpg", "length": 17113, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_13.jpg", "length": 17071, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_14.jpg", "length": 16447, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_15.jpg", "length": 16663, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_16.jpg", "length": 16967, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_17.jpg", "length": 16885, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_18.jpg", "length": 16621, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_19.jpg", "length": 16555, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_20.jpg", "length": 16864, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_21.jpg", "length": 16371, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A0010/files/clusters_00_screenshot_22.jpg", "length": 16992, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_00.jpg", "length": 16880, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_01.jpg", "length": 16642, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_02.jpg", "length": 16730, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_03.jpg", "length": 16843, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_04.jpg", "length": 16761, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_05.jpg", "length": 16567, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_06.jpg", "length": 16641, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_07.jpg", "length": 16891, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_08.jpg", "length": 16972, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_09.jpg", "length": 16624, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_10.jpg", "length": 16943, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_11.jpg", "length": 16915, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_12.jpg", "length": 16692, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_13.jpg", "length": 16706, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_14.jpg", "length": 16948, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_15.jpg", "length": 16558, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_16.jpg", "length": 16705, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_17.jpg", "length": 16932, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_18.jpg", "length": 16717, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_19.jpg", "length": 16821, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0010/files/clusters_01_screenshot_20.jpg", "length": 16364, "contentType": "application/octet-stream", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0010/files/pocket_01.pdb", "length": 7973, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0010/files/pocket_02.pdb", "length": 7839, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0010/files/pocket_03.pdb", "length": 7035, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0010/files/pocket_04.pdb", "length": 4623, "contentType": "chemical/x-pdb", "metadata": {"project": "683f340e292ec74fa9ce7b1c", "md": 0}}]} diff --git a/data/files/A0011/project.json b/data/files/A0011/project.json new file mode 100644 index 0000000000000000000000000000000000000000..fecf2ea41dddef54a81e209faae51af9280ab97e --- /dev/null +++ b/data/files/A0011/project.json @@ -0,0 +1,347 @@ +{ + "accession": "A0011", + "published": true, + "metadata": { + "NAME": "Dynarepo 1IB1", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1IB1" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P63104", + "Q29495" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "SGIPGSPGRQRRHTLPANEFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLTLCPELSLGWFVEGRLVAFIIGSLWDEERLTQESLALHRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPAGPCAIVVGSLTFTEMHCSLR", + "DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLW" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "14-3-3 protein zeta/delta", + "Interaction with phosphoserine on interacting protein", + "Serotonin N-acetyltransferase", + "N-acetyltransferase", + "Disordered", + "YWHAZ-binding", + "Important for the catalytic mechanism; involved in substrate deprotonation" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 12866, + "SYSTRES": 812, + "PROTATS": 12866, + "PROTRES": 812, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "protein-protein interaction D-C", + "agent_1": "protein D", + "agent_2": "protein C", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction D-A", + "agent_1": "protein D", + "agent_2": "protein A", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction D-B", + "agent_1": "protein D", + "agent_2": "protein B", + "selection_1": "chain A", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction C-A", + "agent_1": "protein C", + "agent_2": "protein A", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction C-B", + "agent_1": "protein C", + "agent_2": "protein B", + "selection_1": "chain B", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction A-B", + "agent_1": "protein A", + "agent_2": "protein B", + "selection_1": "chain C", + "selection_2": "chain D", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 10.8229, + "BOXSIZEY": 10.8229, + "BOXSIZEZ": 7.65596, + "mdName": "replica 1", + "mdAtoms": 12866, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_01_screenshot_20.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_02_screenshot_18.jpg", + "clusters_02_screenshot_19.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "clusters_04_screenshot_00.jpg", + "clusters_04_screenshot_01.jpg", + "clusters_04_screenshot_02.jpg", + "clusters_04_screenshot_03.jpg", + "clusters_04_screenshot_04.jpg", + "clusters_04_screenshot_05.jpg", + "clusters_04_screenshot_06.jpg", + "clusters_04_screenshot_07.jpg", + "clusters_04_screenshot_08.jpg", + "clusters_04_screenshot_09.jpg", + "clusters_04_screenshot_10.jpg", + "clusters_04_screenshot_11.jpg", + "clusters_04_screenshot_12.jpg", + "clusters_04_screenshot_13.jpg", + "clusters_04_screenshot_14.jpg", + "clusters_04_screenshot_15.jpg", + "clusters_04_screenshot_16.jpg", + "clusters_04_screenshot_17.jpg", + "clusters_04_screenshot_18.jpg", + "clusters_04_screenshot_19.jpg", + "clusters_04_screenshot_20.jpg", + "clusters_05_screenshot_00.jpg", + "clusters_05_screenshot_01.jpg", + "clusters_05_screenshot_02.jpg", + "clusters_05_screenshot_03.jpg", + "clusters_05_screenshot_04.jpg", + "clusters_05_screenshot_05.jpg", + "clusters_05_screenshot_06.jpg", + "clusters_05_screenshot_07.jpg", + "clusters_05_screenshot_08.jpg", + "clusters_05_screenshot_09.jpg", + "clusters_05_screenshot_10.jpg", + "clusters_05_screenshot_11.jpg", + "clusters_05_screenshot_12.jpg", + "clusters_05_screenshot_13.jpg", + "clusters_05_screenshot_14.jpg", + "clusters_05_screenshot_15.jpg", + "clusters_05_screenshot_16.jpg", + "clusters_05_screenshot_17.jpg", + "clusters_05_screenshot_18.jpg", + "clusters_05_screenshot_19.jpg", + "clusters_05_screenshot_20.jpg", + "clusters_06_screenshot_00.jpg", + "clusters_06_screenshot_01.jpg", + "clusters_06_screenshot_02.jpg", + "clusters_06_screenshot_03.jpg", + "clusters_06_screenshot_04.jpg", + "clusters_06_screenshot_05.jpg", + "clusters_06_screenshot_06.jpg", + "clusters_06_screenshot_07.jpg", + "clusters_06_screenshot_08.jpg", + "clusters_06_screenshot_09.jpg", + "clusters_06_screenshot_10.jpg", + "clusters_06_screenshot_11.jpg", + "clusters_06_screenshot_12.jpg", + "clusters_06_screenshot_13.jpg", + "clusters_06_screenshot_14.jpg", + "clusters_06_screenshot_15.jpg", + "clusters_06_screenshot_16.jpg", + "clusters_06_screenshot_17.jpg", + "clusters_06_screenshot_18.jpg", + "clusters_06_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "clusters-04", + "clusters-05", + "clusters-06", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 1, + "internalId": "683f360b506527d7afa3885b", + "creationDate": "2025-06-03T17:51:07.000Z", + "identifier": "A0011" +} \ No newline at end of file diff --git a/data/files/A0011/records.jsonl b/data/files/A0011/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..5a891a8b49b3aa6cf011919d48bc011379cc890c --- /dev/null +++ b/data/files/A0011/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A0011", "accession": "A0011", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "clusters-06", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1IB1", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1IB1"], "FORCED_REFERENCES": null, "REFERENCES": ["P63104", "Q29495"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["SGIPGSPGRQRRHTLPANEFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLTLCPELSLGWFVEGRLVAFIIGSLWDEERLTQESLALHRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPAGPCAIVVGSLTFTEMHCSLR", "DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLW"], "NUCLSEQ": [], "DOMAINS": ["14-3-3 protein zeta/delta", "Interaction with phosphoserine on interacting protein", "Serotonin N-acetyltransferase", "N-acetyltransferase", "Disordered", "YWHAZ-binding", "Important for the catalytic mechanism; involved in substrate deprotonation"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 12866, "SYSTRES": 812, "PROTATS": 12866, "PROTRES": 812, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction D-C", "agent_1": "protein D", "agent_2": "protein C", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction D-A", "agent_1": "protein D", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction D-B", "agent_1": "protein D", "agent_2": "protein B", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction C-A", "agent_1": "protein C", "agent_2": "protein A", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction C-B", "agent_1": "protein C", "agent_2": "protein B", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction A-B", "agent_1": "protein A", "agent_2": "protein B", "selection_1": "chain C", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.8229, "BOXSIZEY": 10.8229, "BOXSIZEZ": 7.65596, "mdName": "replica 1", "mdAtoms": 12866, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0011/files/topology.tpr", "length": 3721236, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0011/files/screenshot.jpg", "length": 30705, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0011/files/trajectory.bin", "length": 772114392, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 5001, "atoms": 12866}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_01.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_02.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_03.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_04.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_05.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_06.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_07.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_08.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_09.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_10.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_11.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0011/files/structure.pdb", "length": 1042181, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0011/files/trajectory.xtc", "length": 244600752, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_00.jpg", "length": 30142, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_01.jpg", "length": 30588, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_02.jpg", "length": 29426, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_03.jpg", "length": 29853, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_04.jpg", "length": 29504, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_05.jpg", "length": 30086, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_06.jpg", "length": 29773, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_07.jpg", "length": 29719, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_08.jpg", "length": 30028, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_09.jpg", "length": 29813, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_10.jpg", "length": 29599, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_11.jpg", "length": 28986, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_12.jpg", "length": 30436, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_13.jpg", "length": 30067, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_14.jpg", "length": 29664, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_15.jpg", "length": 30127, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_16.jpg", "length": 31564, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_17.jpg", "length": 30718, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_18.jpg", "length": 30234, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_19.jpg", "length": 30594, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_20.jpg", "length": 29765, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_00.jpg", "length": 30153, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_01.jpg", "length": 30630, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_02.jpg", "length": 29973, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_03.jpg", "length": 29844, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_04.jpg", "length": 29946, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_05.jpg", "length": 29315, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_06.jpg", "length": 29716, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_07.jpg", "length": 29460, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_08.jpg", "length": 30443, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_09.jpg", "length": 29218, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_10.jpg", "length": 30058, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_11.jpg", "length": 30648, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_12.jpg", "length": 29232, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_13.jpg", "length": 29650, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_14.jpg", "length": 29816, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_15.jpg", "length": 29569, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_16.jpg", "length": 30116, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_17.jpg", "length": 30107, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_18.jpg", "length": 30973, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_19.jpg", "length": 30348, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_20.jpg", "length": 30129, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_00.jpg", "length": 30218, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_01.jpg", "length": 29485, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_02.jpg", "length": 29825, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_03.jpg", "length": 29640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_04.jpg", "length": 29871, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_05.jpg", "length": 30079, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_06.jpg", "length": 30268, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_07.jpg", "length": 29975, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_08.jpg", "length": 29544, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_09.jpg", "length": 30330, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_10.jpg", "length": 29783, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_11.jpg", "length": 30048, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_12.jpg", "length": 30228, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_13.jpg", "length": 30668, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_14.jpg", "length": 30316, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_15.jpg", "length": 29928, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_16.jpg", "length": 30477, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_17.jpg", "length": 29941, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_18.jpg", "length": 30136, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_19.jpg", "length": 29952, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_00.jpg", "length": 30087, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_01.jpg", "length": 29285, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_02.jpg", "length": 29107, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_03.jpg", "length": 29579, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_04.jpg", "length": 29691, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_05.jpg", "length": 30012, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_06.jpg", "length": 29665, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_07.jpg", "length": 29559, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_08.jpg", "length": 30285, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_09.jpg", "length": 29840, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_10.jpg", "length": 30074, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_11.jpg", "length": 31108, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_12.jpg", "length": 29836, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_13.jpg", "length": 30135, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_14.jpg", "length": 30762, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_15.jpg", "length": 29967, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_16.jpg", "length": 30562, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_17.jpg", "length": 30360, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_18.jpg", "length": 29948, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_19.jpg", "length": 30511, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_00.jpg", "length": 31734, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_01.jpg", "length": 31746, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_02.jpg", "length": 32256, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_03.jpg", "length": 31909, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_04.jpg", "length": 32030, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_05.jpg", "length": 31919, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_06.jpg", "length": 32678, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_07.jpg", "length": 32063, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_08.jpg", "length": 32543, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_09.jpg", "length": 32179, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_10.jpg", "length": 32056, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_11.jpg", "length": 32327, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_12.jpg", "length": 32335, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_13.jpg", "length": 33081, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_14.jpg", "length": 32244, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_15.jpg", "length": 32062, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_16.jpg", "length": 32145, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_17.jpg", "length": 32310, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_18.jpg", "length": 32490, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_19.jpg", "length": 32151, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_20.jpg", "length": 32294, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_00.jpg", "length": 30490, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_01.jpg", "length": 30664, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_02.jpg", "length": 30809, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_03.jpg", "length": 30224, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_04.jpg", "length": 30659, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_05.jpg", "length": 30593, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_06.jpg", "length": 30261, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_07.jpg", "length": 30255, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_08.jpg", "length": 30024, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_09.jpg", "length": 30592, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_10.jpg", "length": 30681, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_11.jpg", "length": 30860, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_12.jpg", "length": 30582, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_13.jpg", "length": 30762, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_14.jpg", "length": 30893, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_15.jpg", "length": 30342, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_16.jpg", "length": 30613, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_17.jpg", "length": 31402, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_18.jpg", "length": 31307, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_19.jpg", "length": 30834, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_20.jpg", "length": 30910, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_00.jpg", "length": 30153, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_01.jpg", "length": 29766, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_02.jpg", "length": 29622, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_03.jpg", "length": 29537, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_04.jpg", "length": 29765, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_05.jpg", "length": 29238, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_06.jpg", "length": 30397, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_07.jpg", "length": 29483, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_08.jpg", "length": 29863, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_09.jpg", "length": 30342, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_10.jpg", "length": 30418, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_11.jpg", "length": 29513, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_12.jpg", "length": 30021, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_13.jpg", "length": 29921, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_14.jpg", "length": 30816, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_15.jpg", "length": 29924, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_16.jpg", "length": 29788, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_17.jpg", "length": 29855, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_18.jpg", "length": 29905, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_19.jpg", "length": 30232, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0011/files/pocket_01.pdb", "length": 54069, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0011/files/pocket_02.pdb", "length": 40937, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0011/files/pocket_03.pdb", "length": 36582, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0011/files/pocket_04.pdb", "length": 25125, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0011/files/pocket_05.pdb", "length": 19162, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0011/files/pocket_06.pdb", "length": 16683, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0011/files/pocket_07.pdb", "length": 11658, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0011/files/pocket_08.pdb", "length": 9782, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0011/files/pocket_09.pdb", "length": 7839, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0011/files/pocket_10.pdb", "length": 6901, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}]} +{"project_identifier": "A0011", "accession": "A0011", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "clusters-06", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1IB1", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1IB1"], "FORCED_REFERENCES": null, "REFERENCES": ["P63104", "Q29495"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["SGIPGSPGRQRRHTLPANEFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLTLCPELSLGWFVEGRLVAFIIGSLWDEERLTQESLALHRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPAGPCAIVVGSLTFTEMHCSLR", "DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLW"], "NUCLSEQ": [], "DOMAINS": ["14-3-3 protein zeta/delta", "Interaction with phosphoserine on interacting protein", "Serotonin N-acetyltransferase", "N-acetyltransferase", "Disordered", "YWHAZ-binding", "Important for the catalytic mechanism; involved in substrate deprotonation"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 12866, "SYSTRES": 812, "PROTATS": 12866, "PROTRES": 812, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction D-C", "agent_1": "protein D", "agent_2": "protein C", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction D-A", "agent_1": "protein D", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction D-B", "agent_1": "protein D", "agent_2": "protein B", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction C-A", "agent_1": "protein C", "agent_2": "protein A", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction C-B", "agent_1": "protein C", "agent_2": "protein B", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction A-B", "agent_1": "protein A", "agent_2": "protein B", "selection_1": "chain C", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.8229, "BOXSIZEY": 10.8229, "BOXSIZEZ": 7.65596, "mdName": "replica 1", "mdAtoms": 12866, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0011/files/topology.tpr", "length": 3721236, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0011/files/screenshot.jpg", "length": 30705, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0011/files/trajectory.bin", "length": 772114392, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 5001, "atoms": 12866}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_01.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_02.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_03.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_04.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_05.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_06.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_07.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_08.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_09.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_10.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_11.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0011/files/structure.pdb", "length": 1042181, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0011/files/trajectory.xtc", "length": 244600752, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_00.jpg", "length": 30142, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_01.jpg", "length": 30588, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_02.jpg", "length": 29426, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_03.jpg", "length": 29853, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_04.jpg", "length": 29504, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_05.jpg", "length": 30086, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_06.jpg", "length": 29773, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_07.jpg", "length": 29719, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_08.jpg", "length": 30028, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_09.jpg", "length": 29813, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_10.jpg", "length": 29599, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_11.jpg", "length": 28986, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_12.jpg", "length": 30436, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_13.jpg", "length": 30067, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_14.jpg", "length": 29664, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_15.jpg", "length": 30127, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_16.jpg", "length": 31564, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_17.jpg", "length": 30718, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_18.jpg", "length": 30234, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_19.jpg", "length": 30594, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_20.jpg", "length": 29765, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_00.jpg", "length": 30153, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_01.jpg", "length": 30630, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_02.jpg", "length": 29973, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_03.jpg", "length": 29844, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_04.jpg", "length": 29946, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_05.jpg", "length": 29315, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_06.jpg", "length": 29716, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_07.jpg", "length": 29460, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_08.jpg", "length": 30443, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_09.jpg", "length": 29218, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_10.jpg", "length": 30058, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_11.jpg", "length": 30648, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_12.jpg", "length": 29232, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_13.jpg", "length": 29650, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_14.jpg", "length": 29816, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_15.jpg", "length": 29569, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_16.jpg", "length": 30116, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_17.jpg", "length": 30107, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_18.jpg", "length": 30973, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_19.jpg", "length": 30348, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_20.jpg", "length": 30129, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_00.jpg", "length": 30218, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_01.jpg", "length": 29485, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_02.jpg", "length": 29825, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_03.jpg", "length": 29640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_04.jpg", "length": 29871, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_05.jpg", "length": 30079, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_06.jpg", "length": 30268, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_07.jpg", "length": 29975, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_08.jpg", "length": 29544, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_09.jpg", "length": 30330, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_10.jpg", "length": 29783, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_11.jpg", "length": 30048, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_12.jpg", "length": 30228, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_13.jpg", "length": 30668, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_14.jpg", "length": 30316, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_15.jpg", "length": 29928, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_16.jpg", "length": 30477, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_17.jpg", "length": 29941, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_18.jpg", "length": 30136, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_19.jpg", "length": 29952, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_00.jpg", "length": 30087, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_01.jpg", "length": 29285, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_02.jpg", "length": 29107, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_03.jpg", "length": 29579, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_04.jpg", "length": 29691, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_05.jpg", "length": 30012, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_06.jpg", "length": 29665, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_07.jpg", "length": 29559, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_08.jpg", "length": 30285, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_09.jpg", "length": 29840, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_10.jpg", "length": 30074, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_11.jpg", "length": 31108, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_12.jpg", "length": 29836, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_13.jpg", "length": 30135, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_14.jpg", "length": 30762, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_15.jpg", "length": 29967, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_16.jpg", "length": 30562, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_17.jpg", "length": 30360, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_18.jpg", "length": 29948, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_19.jpg", "length": 30511, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_00.jpg", "length": 31734, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_01.jpg", "length": 31746, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_02.jpg", "length": 32256, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_03.jpg", "length": 31909, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_04.jpg", "length": 32030, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_05.jpg", "length": 31919, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_06.jpg", "length": 32678, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_07.jpg", "length": 32063, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_08.jpg", "length": 32543, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_09.jpg", "length": 32179, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_10.jpg", "length": 32056, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_11.jpg", "length": 32327, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_12.jpg", "length": 32335, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_13.jpg", "length": 33081, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_14.jpg", "length": 32244, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_15.jpg", "length": 32062, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_16.jpg", "length": 32145, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_17.jpg", "length": 32310, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_18.jpg", "length": 32490, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_19.jpg", "length": 32151, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_20.jpg", "length": 32294, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_00.jpg", "length": 30490, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_01.jpg", "length": 30664, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_02.jpg", "length": 30809, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_03.jpg", "length": 30224, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_04.jpg", "length": 30659, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_05.jpg", "length": 30593, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_06.jpg", "length": 30261, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_07.jpg", "length": 30255, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_08.jpg", "length": 30024, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_09.jpg", "length": 30592, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_10.jpg", "length": 30681, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_11.jpg", "length": 30860, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_12.jpg", "length": 30582, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_13.jpg", "length": 30762, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_14.jpg", "length": 30893, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_15.jpg", "length": 30342, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_16.jpg", "length": 30613, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_17.jpg", "length": 31402, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_18.jpg", "length": 31307, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_19.jpg", "length": 30834, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_20.jpg", "length": 30910, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_00.jpg", "length": 30153, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_01.jpg", "length": 29766, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_02.jpg", "length": 29622, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_03.jpg", "length": 29537, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_04.jpg", "length": 29765, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_05.jpg", "length": 29238, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_06.jpg", "length": 30397, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_07.jpg", "length": 29483, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_08.jpg", "length": 29863, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_09.jpg", "length": 30342, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_10.jpg", "length": 30418, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_11.jpg", "length": 29513, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_12.jpg", "length": 30021, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_13.jpg", "length": 29921, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_14.jpg", "length": 30816, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_15.jpg", "length": 29924, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_16.jpg", "length": 29788, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_17.jpg", "length": 29855, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_18.jpg", "length": 29905, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_19.jpg", "length": 30232, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0011/files/pocket_01.pdb", "length": 54069, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0011/files/pocket_02.pdb", "length": 40937, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0011/files/pocket_03.pdb", "length": 36582, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0011/files/pocket_04.pdb", "length": 25125, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0011/files/pocket_05.pdb", "length": 19162, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0011/files/pocket_06.pdb", "length": 16683, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0011/files/pocket_07.pdb", "length": 11658, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0011/files/pocket_08.pdb", "length": 9782, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0011/files/pocket_09.pdb", "length": 7839, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0011/files/pocket_10.pdb", "length": 6901, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}]} +{"project_identifier": "A0011", "accession": "A0011", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "clusters-06", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1IB1", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1IB1"], "FORCED_REFERENCES": null, "REFERENCES": ["P63104", "Q29495"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["SGIPGSPGRQRRHTLPANEFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLTLCPELSLGWFVEGRLVAFIIGSLWDEERLTQESLALHRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPAGPCAIVVGSLTFTEMHCSLR", "DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLW"], "NUCLSEQ": [], "DOMAINS": ["14-3-3 protein zeta/delta", "Interaction with phosphoserine on interacting protein", "Serotonin N-acetyltransferase", "N-acetyltransferase", "Disordered", "YWHAZ-binding", "Important for the catalytic mechanism; involved in substrate deprotonation"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 12866, "SYSTRES": 812, "PROTATS": 12866, "PROTRES": 812, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction D-C", "agent_1": "protein D", "agent_2": "protein C", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction D-A", "agent_1": "protein D", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction D-B", "agent_1": "protein D", "agent_2": "protein B", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction C-A", "agent_1": "protein C", "agent_2": "protein A", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction C-B", "agent_1": "protein C", "agent_2": "protein B", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction A-B", "agent_1": "protein A", "agent_2": "protein B", "selection_1": "chain C", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.8229, "BOXSIZEY": 10.8229, "BOXSIZEZ": 7.65596, "mdName": "replica 1", "mdAtoms": 12866, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0011/files/topology.tpr", "length": 3721236, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0011/files/screenshot.jpg", "length": 30705, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0011/files/trajectory.bin", "length": 772114392, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 5001, "atoms": 12866}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_01.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_02.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_03.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_04.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_05.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_06.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_07.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_08.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_09.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_10.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0011/files/pca_trajectory_11.bin", "length": 584640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0, "frames": 20, "atoms": 2436}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0011/files/structure.pdb", "length": 1042181, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0011/files/trajectory.xtc", "length": 244600752, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_00.jpg", "length": 30142, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_01.jpg", "length": 30588, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_02.jpg", "length": 29426, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_03.jpg", "length": 29853, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_04.jpg", "length": 29504, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_05.jpg", "length": 30086, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_06.jpg", "length": 29773, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_07.jpg", "length": 29719, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_08.jpg", "length": 30028, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_09.jpg", "length": 29813, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_10.jpg", "length": 29599, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_11.jpg", "length": 28986, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_12.jpg", "length": 30436, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_13.jpg", "length": 30067, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_14.jpg", "length": 29664, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_15.jpg", "length": 30127, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_16.jpg", "length": 31564, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_17.jpg", "length": 30718, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_18.jpg", "length": 30234, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_19.jpg", "length": 30594, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_00_screenshot_20.jpg", "length": 29765, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_00.jpg", "length": 30153, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_01.jpg", "length": 30630, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_02.jpg", "length": 29973, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_03.jpg", "length": 29844, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_04.jpg", "length": 29946, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_05.jpg", "length": 29315, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_06.jpg", "length": 29716, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_07.jpg", "length": 29460, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_08.jpg", "length": 30443, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_09.jpg", "length": 29218, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_10.jpg", "length": 30058, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_11.jpg", "length": 30648, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_12.jpg", "length": 29232, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_13.jpg", "length": 29650, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_14.jpg", "length": 29816, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_15.jpg", "length": 29569, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_16.jpg", "length": 30116, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_17.jpg", "length": 30107, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_18.jpg", "length": 30973, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_19.jpg", "length": 30348, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_01_screenshot_20.jpg", "length": 30129, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_00.jpg", "length": 30218, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_01.jpg", "length": 29485, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_02.jpg", "length": 29825, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_03.jpg", "length": 29640, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_04.jpg", "length": 29871, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_05.jpg", "length": 30079, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_06.jpg", "length": 30268, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_07.jpg", "length": 29975, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_08.jpg", "length": 29544, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_09.jpg", "length": 30330, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_10.jpg", "length": 29783, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_11.jpg", "length": 30048, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_12.jpg", "length": 30228, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_13.jpg", "length": 30668, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_14.jpg", "length": 30316, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_15.jpg", "length": 29928, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_16.jpg", "length": 30477, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_17.jpg", "length": 29941, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_18.jpg", "length": 30136, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_02_screenshot_19.jpg", "length": 29952, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_00.jpg", "length": 30087, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_01.jpg", "length": 29285, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_02.jpg", "length": 29107, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_03.jpg", "length": 29579, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_04.jpg", "length": 29691, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_05.jpg", "length": 30012, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_06.jpg", "length": 29665, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_07.jpg", "length": 29559, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_08.jpg", "length": 30285, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_09.jpg", "length": 29840, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_10.jpg", "length": 30074, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_11.jpg", "length": 31108, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_12.jpg", "length": 29836, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_13.jpg", "length": 30135, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_14.jpg", "length": 30762, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_15.jpg", "length": 29967, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_16.jpg", "length": 30562, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_17.jpg", "length": 30360, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_18.jpg", "length": 29948, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_03_screenshot_19.jpg", "length": 30511, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_00.jpg", "length": 31734, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_01.jpg", "length": 31746, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_02.jpg", "length": 32256, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_03.jpg", "length": 31909, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_04.jpg", "length": 32030, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_05.jpg", "length": 31919, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_06.jpg", "length": 32678, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_07.jpg", "length": 32063, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_08.jpg", "length": 32543, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_09.jpg", "length": 32179, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_10.jpg", "length": 32056, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_11.jpg", "length": 32327, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_12.jpg", "length": 32335, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_13.jpg", "length": 33081, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_14.jpg", "length": 32244, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_15.jpg", "length": 32062, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_16.jpg", "length": 32145, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_17.jpg", "length": 32310, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_18.jpg", "length": 32490, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_19.jpg", "length": 32151, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_04_screenshot_20.jpg", "length": 32294, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_00.jpg", "length": 30490, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_01.jpg", "length": 30664, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_02.jpg", "length": 30809, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_03.jpg", "length": 30224, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_04.jpg", "length": 30659, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_05.jpg", "length": 30593, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_06.jpg", "length": 30261, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_07.jpg", "length": 30255, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_08.jpg", "length": 30024, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_09.jpg", "length": 30592, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_10.jpg", "length": 30681, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_11.jpg", "length": 30860, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_12.jpg", "length": 30582, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_13.jpg", "length": 30762, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_14.jpg", "length": 30893, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_15.jpg", "length": 30342, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_16.jpg", "length": 30613, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_17.jpg", "length": 31402, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_18.jpg", "length": 31307, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_19.jpg", "length": 30834, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A0011/files/clusters_05_screenshot_20.jpg", "length": 30910, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_00.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_00.jpg", "length": 30153, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_01.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_01.jpg", "length": 29766, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_02.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_02.jpg", "length": 29622, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_03.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_03.jpg", "length": 29537, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_04.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_04.jpg", "length": 29765, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_05.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_05.jpg", "length": 29238, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_06.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_06.jpg", "length": 30397, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_07.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_07.jpg", "length": 29483, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_08.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_08.jpg", "length": 29863, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_09.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_09.jpg", "length": 30342, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_10.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_10.jpg", "length": 30418, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_11.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_11.jpg", "length": 29513, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_12.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_12.jpg", "length": 30021, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_13.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_13.jpg", "length": 29921, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_14.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_14.jpg", "length": 30816, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_15.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_15.jpg", "length": 29924, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_16.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_16.jpg", "length": 29788, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_17.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_17.jpg", "length": 29855, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_18.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_18.jpg", "length": 29905, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "clusters_06_screenshot_19.jpg", "downloadUrl": "/projects/A0011/files/clusters_06_screenshot_19.jpg", "length": 30232, "contentType": "application/octet-stream", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0011/files/pocket_01.pdb", "length": 54069, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0011/files/pocket_02.pdb", "length": 40937, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0011/files/pocket_03.pdb", "length": 36582, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0011/files/pocket_04.pdb", "length": 25125, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0011/files/pocket_05.pdb", "length": 19162, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0011/files/pocket_06.pdb", "length": 16683, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0011/files/pocket_07.pdb", "length": 11658, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0011/files/pocket_08.pdb", "length": 9782, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0011/files/pocket_09.pdb", "length": 7839, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0011/files/pocket_10.pdb", "length": 6901, "contentType": "chemical/x-pdb", "metadata": {"project": "683f360b506527d7afa3885b", "md": 0}}]} diff --git a/data/files/A0012/project.json b/data/files/A0012/project.json new file mode 100644 index 0000000000000000000000000000000000000000..6b8e3949b06e96829c54cdd6cdbcf97d2fdadab4 --- /dev/null +++ b/data/files/A0012/project.json @@ -0,0 +1,263 @@ +{ + "accession": "A0012", + "published": true, + "metadata": { + "NAME": "Dynarepo 1ICF", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1ICF" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P07711", + "P04233" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST", + "LTKCQEEVSHIPAVHPGSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGHHNCSES", + "NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Cathepsin L", + "Cathepsin L heavy chain", + "Cathepsin L light chain", + "Cleavage; by autolysis", + "HLA class II histocompatibility antigen gamma chain", + "Thyroglobulin type-1", + "Disordered", + "Required for interaction with CTSL" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 4203, + "SYSTRES": 282, + "PROTATS": 4203, + "PROTRES": 282, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "protein-protein interaction A-B", + "agent_1": "protein A", + "agent_2": "protein B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction A-C", + "agent_1": "protein A", + "agent_2": "protein C", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction B-C", + "agent_1": "protein B", + "agent_2": "protein C", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 8.78188, + "BOXSIZEY": 8.78188, + "BOXSIZEZ": 6.29544, + "mdName": "replica 1", + "mdAtoms": 4203, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_01_screenshot_20.jpg", + "clusters_01_screenshot_21.jpg", + "clusters_01_screenshot_22.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_02_screenshot_18.jpg", + "clusters_02_screenshot_19.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "clusters_03_screenshot_20.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f383a614edc1219cdccf7", + "creationDate": "2025-06-03T18:00:26.000Z", + "identifier": "A0012" +} \ No newline at end of file diff --git a/data/files/A0012/records.jsonl b/data/files/A0012/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..8f1aa2ca723a5245ff84a9e27b58183efcb06e5b --- /dev/null +++ b/data/files/A0012/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A0012", "accession": "A0012", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1ICF", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1ICF"], "FORCED_REFERENCES": null, "REFERENCES": ["P07711", "P04233"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST", "LTKCQEEVSHIPAVHPGSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGHHNCSES", "NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV"], "NUCLSEQ": [], "DOMAINS": ["Cathepsin L", "Cathepsin L heavy chain", "Cathepsin L light chain", "Cleavage; by autolysis", "HLA class II histocompatibility antigen gamma chain", "Thyroglobulin type-1", "Disordered", "Required for interaction with CTSL"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4203, "SYSTRES": 282, "PROTATS": 4203, "PROTRES": 282, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction A-B", "agent_1": "protein A", "agent_2": "protein B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction A-C", "agent_1": "protein A", "agent_2": "protein C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction B-C", "agent_1": "protein B", "agent_2": "protein C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.78188, "BOXSIZEY": 8.78188, "BOXSIZEZ": 6.29544, "mdName": "replica 1", "mdAtoms": 4203, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0012/files/topology.tpr", "length": 1435880, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0012/files/screenshot.jpg", "length": 21835, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0012/files/trajectory.bin", "length": 252230436, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 5001, "atoms": 4203}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_01.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_02.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_03.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_04.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_05.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_06.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_07.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_08.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_09.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_10.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_11.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_12.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_13.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0012/files/structure.pdb", "length": 340478, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0012/files/trajectory.xtc", "length": 80111300, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_00.jpg", "length": 20084, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_01.jpg", "length": 20316, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_02.jpg", "length": 20061, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_03.jpg", "length": 20688, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_04.jpg", "length": 20349, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_05.jpg", "length": 20440, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_06.jpg", "length": 20766, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_07.jpg", "length": 20588, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_08.jpg", "length": 20647, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_09.jpg", "length": 20460, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_10.jpg", "length": 20575, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_11.jpg", "length": 20476, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_12.jpg", "length": 20930, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_13.jpg", "length": 20457, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_14.jpg", "length": 20774, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_15.jpg", "length": 20756, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_16.jpg", "length": 20741, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_17.jpg", "length": 20414, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_18.jpg", "length": 20309, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_19.jpg", "length": 20346, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_00.jpg", "length": 19349, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_01.jpg", "length": 19440, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_02.jpg", "length": 20029, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_03.jpg", "length": 19404, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_04.jpg", "length": 19766, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_05.jpg", "length": 19675, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_06.jpg", "length": 20075, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_07.jpg", "length": 19595, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_08.jpg", "length": 19440, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_09.jpg", "length": 19586, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_10.jpg", "length": 19731, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_11.jpg", "length": 19990, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_12.jpg", "length": 19486, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_13.jpg", "length": 19545, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_14.jpg", "length": 19643, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_15.jpg", "length": 19478, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_16.jpg", "length": 19555, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_17.jpg", "length": 19563, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_18.jpg", "length": 19532, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_19.jpg", "length": 19555, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_20.jpg", "length": 19562, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_21.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_21.jpg", "length": 19913, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_22.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_22.jpg", "length": 19645, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_00.jpg", "length": 20353, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_01.jpg", "length": 20632, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_02.jpg", "length": 20953, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_03.jpg", "length": 21009, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_04.jpg", "length": 20645, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_05.jpg", "length": 20555, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_06.jpg", "length": 21013, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_07.jpg", "length": 21022, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_08.jpg", "length": 21161, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_09.jpg", "length": 20506, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_10.jpg", "length": 21293, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_11.jpg", "length": 21501, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_12.jpg", "length": 21101, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_13.jpg", "length": 21130, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_14.jpg", "length": 21079, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_15.jpg", "length": 21289, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_16.jpg", "length": 21427, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_17.jpg", "length": 21429, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_18.jpg", "length": 20750, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_19.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_00.jpg", "length": 20896, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_01.jpg", "length": 20802, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_02.jpg", "length": 21136, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_03.jpg", "length": 20534, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_04.jpg", "length": 20866, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_05.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_06.jpg", "length": 20805, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_07.jpg", "length": 21539, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_08.jpg", "length": 21038, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_09.jpg", "length": 20431, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_10.jpg", "length": 21205, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_11.jpg", "length": 21135, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_12.jpg", "length": 21288, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_13.jpg", "length": 21500, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_14.jpg", "length": 21436, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_15.jpg", "length": 21811, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_16.jpg", "length": 21444, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_17.jpg", "length": 21273, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_18.jpg", "length": 21185, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_19.jpg", "length": 21360, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_20.jpg", "length": 21442, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0012/files/pocket_01.pdb", "length": 13534, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0012/files/pocket_02.pdb", "length": 12663, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0012/files/pocket_03.pdb", "length": 10720, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0012/files/pocket_04.pdb", "length": 10452, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0012/files/pocket_05.pdb", "length": 8241, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0012/files/pocket_06.pdb", "length": 7303, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0012/files/pocket_07.pdb", "length": 6767, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0012/files/pocket_08.pdb", "length": 6231, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0012/files/pocket_09.pdb", "length": 3283, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}]} +{"project_identifier": "A0012", "accession": "A0012", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1ICF", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1ICF"], "FORCED_REFERENCES": null, "REFERENCES": ["P07711", "P04233"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST", "LTKCQEEVSHIPAVHPGSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGHHNCSES", "NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV"], "NUCLSEQ": [], "DOMAINS": ["Cathepsin L", "Cathepsin L heavy chain", "Cathepsin L light chain", "Cleavage; by autolysis", "HLA class II histocompatibility antigen gamma chain", "Thyroglobulin type-1", "Disordered", "Required for interaction with CTSL"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4203, "SYSTRES": 282, "PROTATS": 4203, "PROTRES": 282, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction A-B", "agent_1": "protein A", "agent_2": "protein B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction A-C", "agent_1": "protein A", "agent_2": "protein C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction B-C", "agent_1": "protein B", "agent_2": "protein C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.78188, "BOXSIZEY": 8.78188, "BOXSIZEZ": 6.29544, "mdName": "replica 1", "mdAtoms": 4203, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0012/files/topology.tpr", "length": 1435880, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0012/files/screenshot.jpg", "length": 21835, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0012/files/trajectory.bin", "length": 252230436, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 5001, "atoms": 4203}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_01.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_02.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_03.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_04.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_05.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_06.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_07.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_08.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_09.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_10.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_11.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_12.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_13.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0012/files/structure.pdb", "length": 340478, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0012/files/trajectory.xtc", "length": 80111300, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_00.jpg", "length": 20084, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_01.jpg", "length": 20316, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_02.jpg", "length": 20061, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_03.jpg", "length": 20688, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_04.jpg", "length": 20349, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_05.jpg", "length": 20440, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_06.jpg", "length": 20766, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_07.jpg", "length": 20588, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_08.jpg", "length": 20647, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_09.jpg", "length": 20460, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_10.jpg", "length": 20575, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_11.jpg", "length": 20476, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_12.jpg", "length": 20930, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_13.jpg", "length": 20457, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_14.jpg", "length": 20774, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_15.jpg", "length": 20756, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_16.jpg", "length": 20741, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_17.jpg", "length": 20414, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_18.jpg", "length": 20309, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_19.jpg", "length": 20346, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_00.jpg", "length": 19349, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_01.jpg", "length": 19440, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_02.jpg", "length": 20029, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_03.jpg", "length": 19404, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_04.jpg", "length": 19766, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_05.jpg", "length": 19675, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_06.jpg", "length": 20075, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_07.jpg", "length": 19595, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_08.jpg", "length": 19440, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_09.jpg", "length": 19586, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_10.jpg", "length": 19731, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_11.jpg", "length": 19990, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_12.jpg", "length": 19486, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_13.jpg", "length": 19545, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_14.jpg", "length": 19643, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_15.jpg", "length": 19478, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_16.jpg", "length": 19555, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_17.jpg", "length": 19563, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_18.jpg", "length": 19532, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_19.jpg", "length": 19555, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_20.jpg", "length": 19562, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_21.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_21.jpg", "length": 19913, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_22.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_22.jpg", "length": 19645, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_00.jpg", "length": 20353, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_01.jpg", "length": 20632, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_02.jpg", "length": 20953, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_03.jpg", "length": 21009, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_04.jpg", "length": 20645, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_05.jpg", "length": 20555, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_06.jpg", "length": 21013, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_07.jpg", "length": 21022, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_08.jpg", "length": 21161, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_09.jpg", "length": 20506, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_10.jpg", "length": 21293, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_11.jpg", "length": 21501, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_12.jpg", "length": 21101, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_13.jpg", "length": 21130, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_14.jpg", "length": 21079, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_15.jpg", "length": 21289, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_16.jpg", "length": 21427, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_17.jpg", "length": 21429, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_18.jpg", "length": 20750, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_19.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_00.jpg", "length": 20896, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_01.jpg", "length": 20802, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_02.jpg", "length": 21136, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_03.jpg", "length": 20534, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_04.jpg", "length": 20866, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_05.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_06.jpg", "length": 20805, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_07.jpg", "length": 21539, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_08.jpg", "length": 21038, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_09.jpg", "length": 20431, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_10.jpg", "length": 21205, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_11.jpg", "length": 21135, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_12.jpg", "length": 21288, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_13.jpg", "length": 21500, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_14.jpg", "length": 21436, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_15.jpg", "length": 21811, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_16.jpg", "length": 21444, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_17.jpg", "length": 21273, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_18.jpg", "length": 21185, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_19.jpg", "length": 21360, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_20.jpg", "length": 21442, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0012/files/pocket_01.pdb", "length": 13534, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0012/files/pocket_02.pdb", "length": 12663, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0012/files/pocket_03.pdb", "length": 10720, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0012/files/pocket_04.pdb", "length": 10452, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0012/files/pocket_05.pdb", "length": 8241, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0012/files/pocket_06.pdb", "length": 7303, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0012/files/pocket_07.pdb", "length": 6767, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0012/files/pocket_08.pdb", "length": 6231, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0012/files/pocket_09.pdb", "length": 3283, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}]} +{"project_identifier": "A0012", "accession": "A0012", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1ICF", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1ICF"], "FORCED_REFERENCES": null, "REFERENCES": ["P07711", "P04233"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST", "LTKCQEEVSHIPAVHPGSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGHHNCSES", "NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV"], "NUCLSEQ": [], "DOMAINS": ["Cathepsin L", "Cathepsin L heavy chain", "Cathepsin L light chain", "Cleavage; by autolysis", "HLA class II histocompatibility antigen gamma chain", "Thyroglobulin type-1", "Disordered", "Required for interaction with CTSL"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4203, "SYSTRES": 282, "PROTATS": 4203, "PROTRES": 282, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction A-B", "agent_1": "protein A", "agent_2": "protein B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction A-C", "agent_1": "protein A", "agent_2": "protein C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction B-C", "agent_1": "protein B", "agent_2": "protein C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.78188, "BOXSIZEY": 8.78188, "BOXSIZEZ": 6.29544, "mdName": "replica 1", "mdAtoms": 4203, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0012/files/topology.tpr", "length": 1435880, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0012/files/screenshot.jpg", "length": 21835, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0012/files/trajectory.bin", "length": 252230436, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 5001, "atoms": 4203}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_01.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_02.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_03.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_04.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_05.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_06.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_07.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_08.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_09.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_10.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_11.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_12.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0012/files/pca_trajectory_13.bin", "length": 203040, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0, "frames": 20, "atoms": 846}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0012/files/structure.pdb", "length": 340478, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0012/files/trajectory.xtc", "length": 80111300, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_00.jpg", "length": 20084, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_01.jpg", "length": 20316, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_02.jpg", "length": 20061, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_03.jpg", "length": 20688, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_04.jpg", "length": 20349, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_05.jpg", "length": 20440, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_06.jpg", "length": 20766, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_07.jpg", "length": 20588, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_08.jpg", "length": 20647, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_09.jpg", "length": 20460, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_10.jpg", "length": 20575, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_11.jpg", "length": 20476, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_12.jpg", "length": 20930, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_13.jpg", "length": 20457, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_14.jpg", "length": 20774, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_15.jpg", "length": 20756, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_16.jpg", "length": 20741, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_17.jpg", "length": 20414, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_18.jpg", "length": 20309, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_00_screenshot_19.jpg", "length": 20346, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_00.jpg", "length": 19349, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_01.jpg", "length": 19440, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_02.jpg", "length": 20029, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_03.jpg", "length": 19404, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_04.jpg", "length": 19766, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_05.jpg", "length": 19675, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_06.jpg", "length": 20075, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_07.jpg", "length": 19595, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_08.jpg", "length": 19440, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_09.jpg", "length": 19586, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_10.jpg", "length": 19731, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_11.jpg", "length": 19990, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_12.jpg", "length": 19486, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_13.jpg", "length": 19545, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_14.jpg", "length": 19643, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_15.jpg", "length": 19478, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_16.jpg", "length": 19555, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_17.jpg", "length": 19563, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_18.jpg", "length": 19532, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_19.jpg", "length": 19555, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_20.jpg", "length": 19562, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_21.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_21.jpg", "length": 19913, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_01_screenshot_22.jpg", "downloadUrl": "/projects/A0012/files/clusters_01_screenshot_22.jpg", "length": 19645, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_00.jpg", "length": 20353, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_01.jpg", "length": 20632, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_02.jpg", "length": 20953, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_03.jpg", "length": 21009, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_04.jpg", "length": 20645, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_05.jpg", "length": 20555, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_06.jpg", "length": 21013, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_07.jpg", "length": 21022, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_08.jpg", "length": 21161, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_09.jpg", "length": 20506, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_10.jpg", "length": 21293, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_11.jpg", "length": 21501, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_12.jpg", "length": 21101, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_13.jpg", "length": 21130, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_14.jpg", "length": 21079, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_15.jpg", "length": 21289, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_16.jpg", "length": 21427, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_17.jpg", "length": 21429, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_18.jpg", "length": 20750, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_02_screenshot_19.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_00.jpg", "length": 20896, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_01.jpg", "length": 20802, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_02.jpg", "length": 21136, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_03.jpg", "length": 20534, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_04.jpg", "length": 20866, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_05.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_06.jpg", "length": 20805, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_07.jpg", "length": 21539, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_08.jpg", "length": 21038, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_09.jpg", "length": 20431, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_10.jpg", "length": 21205, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_11.jpg", "length": 21135, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_12.jpg", "length": 21288, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_13.jpg", "length": 21500, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_14.jpg", "length": 21436, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_15.jpg", "length": 21811, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_16.jpg", "length": 21444, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_17.jpg", "length": 21273, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_18.jpg", "length": 21185, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_19.jpg", "length": 21360, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A0012/files/clusters_03_screenshot_20.jpg", "length": 21442, "contentType": "application/octet-stream", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0012/files/pocket_01.pdb", "length": 13534, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0012/files/pocket_02.pdb", "length": 12663, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0012/files/pocket_03.pdb", "length": 10720, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0012/files/pocket_04.pdb", "length": 10452, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0012/files/pocket_05.pdb", "length": 8241, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0012/files/pocket_06.pdb", "length": 7303, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0012/files/pocket_07.pdb", "length": 6767, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0012/files/pocket_08.pdb", "length": 6231, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0012/files/pocket_09.pdb", "length": 3283, "contentType": "chemical/x-pdb", "metadata": {"project": "683f383a614edc1219cdccf7", "md": 0}}]} diff --git a/data/files/A0013/project.json b/data/files/A0013/project.json new file mode 100644 index 0000000000000000000000000000000000000000..13bc56f85f54b72961a2109fb21967f03c00e694 --- /dev/null +++ b/data/files/A0013/project.json @@ -0,0 +1,196 @@ +{ + "accession": "A0013", + "published": true, + "metadata": { + "NAME": "Dynarepo 1J7D", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1J7D" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "Q15819", + "P61088" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN", + "GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Ubiquitin-conjugating enzyme E2 variant 2", + "UBC core", + "Ubiquitin-conjugating enzyme E2 N", + "UBC core" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 4609, + "SYSTRES": 289, + "PROTATS": 4609, + "PROTRES": 289, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "protein-protein interaction B-A", + "agent_1": "protein B", + "agent_2": "protein A", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 9.80096, + "BOXSIZEY": 9.80096, + "BOXSIZEZ": 6.94512, + "mdName": "replica 1", + "mdAtoms": 4609, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "pca_trajectory_17.bin", + "pca_trajectory_18.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f39723fbce78ed0de2e0d", + "creationDate": "2025-06-03T18:05:38.000Z", + "identifier": "A0013" +} \ No newline at end of file diff --git a/data/files/A0013/records.jsonl b/data/files/A0013/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..3eb93d49791c01bfe6c00d466fc96f967bcf7488 --- /dev/null +++ b/data/files/A0013/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A0013", "accession": "A0013", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1J7D", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1J7D"], "FORCED_REFERENCES": null, "REFERENCES": ["Q15819", "P61088"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN", "GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN"], "NUCLSEQ": [], "DOMAINS": ["Ubiquitin-conjugating enzyme E2 variant 2", "UBC core", "Ubiquitin-conjugating enzyme E2 N", "UBC core"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4609, "SYSTRES": 289, "PROTATS": 4609, "PROTRES": 289, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.80096, "BOXSIZEY": 9.80096, "BOXSIZEZ": 6.94512, "mdName": "replica 1", "mdAtoms": 4609, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0013/files/topology.tpr", "length": 1572340, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0013/files/screenshot.jpg", "length": 20472, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0013/files/trajectory.bin", "length": 276595308, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 5001, "atoms": 4609}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_01.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_02.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_03.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_04.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_05.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_06.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_07.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_08.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_09.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_10.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_11.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_12.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_13.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_14.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_15.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_16.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_17.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_18.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_18.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0013/files/structure.pdb", "length": 373364, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0013/files/trajectory.xtc", "length": 87840616, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_00.jpg", "length": 21303, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_01.jpg", "length": 21182, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_02.jpg", "length": 21379, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_03.jpg", "length": 20900, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_04.jpg", "length": 21166, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_05.jpg", "length": 21288, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_06.jpg", "length": 21457, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_07.jpg", "length": 20762, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_08.jpg", "length": 21385, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_09.jpg", "length": 20954, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_10.jpg", "length": 21140, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_11.jpg", "length": 21226, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_12.jpg", "length": 20950, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_13.jpg", "length": 21116, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_14.jpg", "length": 21695, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_15.jpg", "length": 21108, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_16.jpg", "length": 21130, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_17.jpg", "length": 21036, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_18.jpg", "length": 21382, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_00.jpg", "length": 20718, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_01.jpg", "length": 20701, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_02.jpg", "length": 20978, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_03.jpg", "length": 20791, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_04.jpg", "length": 20925, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_05.jpg", "length": 21079, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_06.jpg", "length": 21136, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_07.jpg", "length": 21066, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_08.jpg", "length": 20957, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_09.jpg", "length": 20556, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_10.jpg", "length": 20933, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_11.jpg", "length": 21044, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_12.jpg", "length": 21130, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_13.jpg", "length": 21013, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_14.jpg", "length": 20875, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_15.jpg", "length": 20533, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_16.jpg", "length": 20684, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_17.jpg", "length": 20766, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_18.jpg", "length": 20727, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0013/files/pocket_01.pdb", "length": 21708, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0013/files/pocket_02.pdb", "length": 18760, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0013/files/pocket_03.pdb", "length": 9447, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0013/files/pocket_04.pdb", "length": 8308, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0013/files/pocket_05.pdb", "length": 3618, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0013/files/pocket_06.pdb", "length": 3417, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}]} +{"project_identifier": "A0013", "accession": "A0013", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1J7D", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1J7D"], "FORCED_REFERENCES": null, "REFERENCES": ["Q15819", "P61088"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN", "GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN"], "NUCLSEQ": [], "DOMAINS": ["Ubiquitin-conjugating enzyme E2 variant 2", "UBC core", "Ubiquitin-conjugating enzyme E2 N", "UBC core"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4609, "SYSTRES": 289, "PROTATS": 4609, "PROTRES": 289, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.80096, "BOXSIZEY": 9.80096, "BOXSIZEZ": 6.94512, "mdName": "replica 1", "mdAtoms": 4609, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0013/files/topology.tpr", "length": 1572340, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0013/files/screenshot.jpg", "length": 20472, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0013/files/trajectory.bin", "length": 276595308, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 5001, "atoms": 4609}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_01.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_02.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_03.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_04.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_05.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_06.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_07.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_08.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_09.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_10.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_11.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_12.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_13.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_14.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_15.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_16.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_17.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_18.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_18.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0013/files/structure.pdb", "length": 373364, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0013/files/trajectory.xtc", "length": 87840616, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_00.jpg", "length": 21303, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_01.jpg", "length": 21182, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_02.jpg", "length": 21379, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_03.jpg", "length": 20900, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_04.jpg", "length": 21166, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_05.jpg", "length": 21288, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_06.jpg", "length": 21457, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_07.jpg", "length": 20762, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_08.jpg", "length": 21385, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_09.jpg", "length": 20954, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_10.jpg", "length": 21140, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_11.jpg", "length": 21226, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_12.jpg", "length": 20950, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_13.jpg", "length": 21116, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_14.jpg", "length": 21695, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_15.jpg", "length": 21108, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_16.jpg", "length": 21130, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_17.jpg", "length": 21036, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_18.jpg", "length": 21382, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_00.jpg", "length": 20718, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_01.jpg", "length": 20701, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_02.jpg", "length": 20978, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_03.jpg", "length": 20791, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_04.jpg", "length": 20925, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_05.jpg", "length": 21079, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_06.jpg", "length": 21136, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_07.jpg", "length": 21066, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_08.jpg", "length": 20957, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_09.jpg", "length": 20556, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_10.jpg", "length": 20933, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_11.jpg", "length": 21044, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_12.jpg", "length": 21130, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_13.jpg", "length": 21013, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_14.jpg", "length": 20875, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_15.jpg", "length": 20533, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_16.jpg", "length": 20684, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_17.jpg", "length": 20766, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_18.jpg", "length": 20727, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0013/files/pocket_01.pdb", "length": 21708, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0013/files/pocket_02.pdb", "length": 18760, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0013/files/pocket_03.pdb", "length": 9447, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0013/files/pocket_04.pdb", "length": 8308, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0013/files/pocket_05.pdb", "length": 3618, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0013/files/pocket_06.pdb", "length": 3417, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}]} +{"project_identifier": "A0013", "accession": "A0013", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1J7D", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1J7D"], "FORCED_REFERENCES": null, "REFERENCES": ["Q15819", "P61088"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN", "GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN"], "NUCLSEQ": [], "DOMAINS": ["Ubiquitin-conjugating enzyme E2 variant 2", "UBC core", "Ubiquitin-conjugating enzyme E2 N", "UBC core"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4609, "SYSTRES": 289, "PROTATS": 4609, "PROTRES": 289, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.80096, "BOXSIZEY": 9.80096, "BOXSIZEZ": 6.94512, "mdName": "replica 1", "mdAtoms": 4609, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0013/files/topology.tpr", "length": 1572340, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0013/files/screenshot.jpg", "length": 20472, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0013/files/trajectory.bin", "length": 276595308, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 5001, "atoms": 4609}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_01.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_02.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_03.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_04.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_05.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_06.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_07.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_08.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_09.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_10.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_11.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_12.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_13.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_14.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_15.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_16.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_17.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "pca_trajectory_18.bin", "downloadUrl": "/projects/A0013/files/pca_trajectory_18.bin", "length": 208080, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0, "frames": 20, "atoms": 867}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0013/files/structure.pdb", "length": 373364, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0013/files/trajectory.xtc", "length": 87840616, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_00.jpg", "length": 21303, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_01.jpg", "length": 21182, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_02.jpg", "length": 21379, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_03.jpg", "length": 20900, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_04.jpg", "length": 21166, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_05.jpg", "length": 21288, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_06.jpg", "length": 21457, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_07.jpg", "length": 20762, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_08.jpg", "length": 21385, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_09.jpg", "length": 20954, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_10.jpg", "length": 21140, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_11.jpg", "length": 21226, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_12.jpg", "length": 20950, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_13.jpg", "length": 21116, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_14.jpg", "length": 21695, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_15.jpg", "length": 21108, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_16.jpg", "length": 21130, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_17.jpg", "length": 21036, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0013/files/clusters_00_screenshot_18.jpg", "length": 21382, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_00.jpg", "length": 20718, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_01.jpg", "length": 20701, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_02.jpg", "length": 20978, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_03.jpg", "length": 20791, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_04.jpg", "length": 20925, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_05.jpg", "length": 21079, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_06.jpg", "length": 21136, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_07.jpg", "length": 21066, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_08.jpg", "length": 20957, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_09.jpg", "length": 20556, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_10.jpg", "length": 20933, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_11.jpg", "length": 21044, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_12.jpg", "length": 21130, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_13.jpg", "length": 21013, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_14.jpg", "length": 20875, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_15.jpg", "length": 20533, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_16.jpg", "length": 20684, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_17.jpg", "length": 20766, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0013/files/clusters_01_screenshot_18.jpg", "length": 20727, "contentType": "application/octet-stream", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0013/files/pocket_01.pdb", "length": 21708, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0013/files/pocket_02.pdb", "length": 18760, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0013/files/pocket_03.pdb", "length": 9447, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0013/files/pocket_04.pdb", "length": 8308, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0013/files/pocket_05.pdb", "length": 3618, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0013/files/pocket_06.pdb", "length": 3417, "contentType": "chemical/x-pdb", "metadata": {"project": "683f39723fbce78ed0de2e0d", "md": 0}}]} diff --git a/data/files/A0014/project.json b/data/files/A0014/project.json new file mode 100644 index 0000000000000000000000000000000000000000..9ea325c78369a0dde041bfcfbb4838b88e361c88 --- /dev/null +++ b/data/files/A0014/project.json @@ -0,0 +1,199 @@ +{ + "accession": "A0014", + "published": true, + "metadata": { + "NAME": "Dynarepo 1JIW", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1JIW" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "Q03023", + "Q03026" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "GRSDAYTQVDNFLHAYARGGDELVNGHPSYTVDQAAEQILREQASWQKAPGDSVLTLSYSFLTKPNDFFNTPWKYVSDIYSLGKFSAFSAQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSVGGAAFAFLPDVPDALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMSYWEEQNTGQDFKGAYSSAPLLDDIAAIQKLYGANLTTRTGDTVYGFNSNTERDFYSATSSSSKLVFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDVGGLKGNVSIAAGVTVENAIGGSGSDLLIGNDVANVLKGGAGNDILYGGLGADQLWGGAGADTFVYGDIAESSAAAPDTLRDFVSGQDKIDLSGLDAFVNGGLVLQYVDAFAGKAGQAILSYDAASKAGSLAIDFSGDAHADFAINLIGQATQADIVV", + "SSLILLSASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDYRVQKGDGGQLVLRRAT" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Serralysin", + "Proteinase inhibitor" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 8350, + "SYSTRES": 575, + "PROTATS": 8350, + "PROTRES": 575, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "protein-protein interaction B-A", + "agent_1": "protein B", + "agent_2": "protein A", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 11.8135, + "BOXSIZEY": 11.8135, + "BOXSIZEZ": 8.35064, + "mdName": "replica 1", + "mdAtoms": 8350, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "pca_trajectory_17.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f3b10632a89b6cbbd235c", + "creationDate": "2025-06-03T18:12:32.000Z", + "identifier": "A0014" +} \ No newline at end of file diff --git a/data/files/A0014/records.jsonl b/data/files/A0014/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..368934130afa634dff17d8e05dc2f3e7f1f826fa --- /dev/null +++ b/data/files/A0014/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A0014", "accession": "A0014", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1JIW", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1JIW"], "FORCED_REFERENCES": null, "REFERENCES": ["Q03023", "Q03026"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GRSDAYTQVDNFLHAYARGGDELVNGHPSYTVDQAAEQILREQASWQKAPGDSVLTLSYSFLTKPNDFFNTPWKYVSDIYSLGKFSAFSAQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSVGGAAFAFLPDVPDALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMSYWEEQNTGQDFKGAYSSAPLLDDIAAIQKLYGANLTTRTGDTVYGFNSNTERDFYSATSSSSKLVFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDVGGLKGNVSIAAGVTVENAIGGSGSDLLIGNDVANVLKGGAGNDILYGGLGADQLWGGAGADTFVYGDIAESSAAAPDTLRDFVSGQDKIDLSGLDAFVNGGLVLQYVDAFAGKAGQAILSYDAASKAGSLAIDFSGDAHADFAINLIGQATQADIVV", "SSLILLSASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDYRVQKGDGGQLVLRRAT"], "NUCLSEQ": [], "DOMAINS": ["Serralysin", "Proteinase inhibitor"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 8350, "SYSTRES": 575, "PROTATS": 8350, "PROTRES": 575, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.8135, "BOXSIZEY": 11.8135, "BOXSIZEZ": 8.35064, "mdName": "replica 1", "mdAtoms": 8350, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0014/files/topology.tpr", "length": 2601676, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0014/files/screenshot.jpg", "length": 26011, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0014/files/trajectory.bin", "length": 501100200, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 5001, "atoms": 8350}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_01.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_02.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_03.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_04.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_05.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_06.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_07.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_08.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_09.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_10.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_11.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_12.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_13.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_14.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_15.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_16.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_17.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0014/files/structure.pdb", "length": 676385, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0014/files/trajectory.xtc", "length": 158640632, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_00.jpg", "length": 26431, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_01.jpg", "length": 26608, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_02.jpg", "length": 26486, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_03.jpg", "length": 26685, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_04.jpg", "length": 26747, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_05.jpg", "length": 27059, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_06.jpg", "length": 26737, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_07.jpg", "length": 26674, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_08.jpg", "length": 26593, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_09.jpg", "length": 26273, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_10.jpg", "length": 26274, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_11.jpg", "length": 26696, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_12.jpg", "length": 26331, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_13.jpg", "length": 26159, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_14.jpg", "length": 26401, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_15.jpg", "length": 26931, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_16.jpg", "length": 26958, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_17.jpg", "length": 26132, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_18.jpg", "length": 26720, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_19.jpg", "length": 26238, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_00.jpg", "length": 26865, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_01.jpg", "length": 26827, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_02.jpg", "length": 26982, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_03.jpg", "length": 26931, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_04.jpg", "length": 27368, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_05.jpg", "length": 26919, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_06.jpg", "length": 26511, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_07.jpg", "length": 26436, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_08.jpg", "length": 27069, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_09.jpg", "length": 26747, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_10.jpg", "length": 27078, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_11.jpg", "length": 26923, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_12.jpg", "length": 26831, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_13.jpg", "length": 26629, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_14.jpg", "length": 26670, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_15.jpg", "length": 26801, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_16.jpg", "length": 26821, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_17.jpg", "length": 26735, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_18.jpg", "length": 26993, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_19.jpg", "length": 27093, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0014/files/pocket_01.pdb", "length": 20569, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0014/files/pocket_02.pdb", "length": 17353, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0014/files/pocket_03.pdb", "length": 15343, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0014/files/pocket_04.pdb", "length": 14606, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0014/files/pocket_05.pdb", "length": 14338, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0014/files/pocket_06.pdb", "length": 13869, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0014/files/pocket_07.pdb", "length": 13199, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0014/files/pocket_08.pdb", "length": 12864, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0014/files/pocket_09.pdb", "length": 12529, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0014/files/pocket_10.pdb", "length": 9447, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}]} +{"project_identifier": "A0014", "accession": "A0014", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1JIW", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1JIW"], "FORCED_REFERENCES": null, "REFERENCES": ["Q03023", "Q03026"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GRSDAYTQVDNFLHAYARGGDELVNGHPSYTVDQAAEQILREQASWQKAPGDSVLTLSYSFLTKPNDFFNTPWKYVSDIYSLGKFSAFSAQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSVGGAAFAFLPDVPDALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMSYWEEQNTGQDFKGAYSSAPLLDDIAAIQKLYGANLTTRTGDTVYGFNSNTERDFYSATSSSSKLVFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDVGGLKGNVSIAAGVTVENAIGGSGSDLLIGNDVANVLKGGAGNDILYGGLGADQLWGGAGADTFVYGDIAESSAAAPDTLRDFVSGQDKIDLSGLDAFVNGGLVLQYVDAFAGKAGQAILSYDAASKAGSLAIDFSGDAHADFAINLIGQATQADIVV", "SSLILLSASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDYRVQKGDGGQLVLRRAT"], "NUCLSEQ": [], "DOMAINS": ["Serralysin", "Proteinase inhibitor"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 8350, "SYSTRES": 575, "PROTATS": 8350, "PROTRES": 575, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.8135, "BOXSIZEY": 11.8135, "BOXSIZEZ": 8.35064, "mdName": "replica 1", "mdAtoms": 8350, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0014/files/topology.tpr", "length": 2601676, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0014/files/screenshot.jpg", "length": 26011, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0014/files/trajectory.bin", "length": 501100200, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 5001, "atoms": 8350}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_01.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_02.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_03.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_04.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_05.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_06.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_07.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_08.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_09.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_10.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_11.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_12.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_13.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_14.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_15.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_16.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_17.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0014/files/structure.pdb", "length": 676385, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0014/files/trajectory.xtc", "length": 158640632, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_00.jpg", "length": 26431, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_01.jpg", "length": 26608, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_02.jpg", "length": 26486, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_03.jpg", "length": 26685, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_04.jpg", "length": 26747, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_05.jpg", "length": 27059, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_06.jpg", "length": 26737, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_07.jpg", "length": 26674, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_08.jpg", "length": 26593, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_09.jpg", "length": 26273, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_10.jpg", "length": 26274, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_11.jpg", "length": 26696, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_12.jpg", "length": 26331, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_13.jpg", "length": 26159, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_14.jpg", "length": 26401, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_15.jpg", "length": 26931, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_16.jpg", "length": 26958, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_17.jpg", "length": 26132, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_18.jpg", "length": 26720, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_19.jpg", "length": 26238, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_00.jpg", "length": 26865, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_01.jpg", "length": 26827, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_02.jpg", "length": 26982, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_03.jpg", "length": 26931, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_04.jpg", "length": 27368, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_05.jpg", "length": 26919, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_06.jpg", "length": 26511, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_07.jpg", "length": 26436, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_08.jpg", "length": 27069, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_09.jpg", "length": 26747, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_10.jpg", "length": 27078, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_11.jpg", "length": 26923, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_12.jpg", "length": 26831, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_13.jpg", "length": 26629, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_14.jpg", "length": 26670, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_15.jpg", "length": 26801, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_16.jpg", "length": 26821, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_17.jpg", "length": 26735, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_18.jpg", "length": 26993, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_19.jpg", "length": 27093, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0014/files/pocket_01.pdb", "length": 20569, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0014/files/pocket_02.pdb", "length": 17353, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0014/files/pocket_03.pdb", "length": 15343, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0014/files/pocket_04.pdb", "length": 14606, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0014/files/pocket_05.pdb", "length": 14338, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0014/files/pocket_06.pdb", "length": 13869, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0014/files/pocket_07.pdb", "length": 13199, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0014/files/pocket_08.pdb", "length": 12864, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0014/files/pocket_09.pdb", "length": 12529, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0014/files/pocket_10.pdb", "length": 9447, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}]} +{"project_identifier": "A0014", "accession": "A0014", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1JIW", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1JIW"], "FORCED_REFERENCES": null, "REFERENCES": ["Q03023", "Q03026"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GRSDAYTQVDNFLHAYARGGDELVNGHPSYTVDQAAEQILREQASWQKAPGDSVLTLSYSFLTKPNDFFNTPWKYVSDIYSLGKFSAFSAQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSVGGAAFAFLPDVPDALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMSYWEEQNTGQDFKGAYSSAPLLDDIAAIQKLYGANLTTRTGDTVYGFNSNTERDFYSATSSSSKLVFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDVGGLKGNVSIAAGVTVENAIGGSGSDLLIGNDVANVLKGGAGNDILYGGLGADQLWGGAGADTFVYGDIAESSAAAPDTLRDFVSGQDKIDLSGLDAFVNGGLVLQYVDAFAGKAGQAILSYDAASKAGSLAIDFSGDAHADFAINLIGQATQADIVV", "SSLILLSASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDYRVQKGDGGQLVLRRAT"], "NUCLSEQ": [], "DOMAINS": ["Serralysin", "Proteinase inhibitor"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 8350, "SYSTRES": 575, "PROTATS": 8350, "PROTRES": 575, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.8135, "BOXSIZEY": 11.8135, "BOXSIZEZ": 8.35064, "mdName": "replica 1", "mdAtoms": 8350, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0014/files/topology.tpr", "length": 2601676, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0014/files/screenshot.jpg", "length": 26011, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0014/files/trajectory.bin", "length": 501100200, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 5001, "atoms": 8350}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_01.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_02.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_03.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_04.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_05.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_06.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_07.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_08.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_09.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_10.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_11.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_12.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_13.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_14.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_15.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_16.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A0014/files/pca_trajectory_17.bin", "length": 414000, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0, "frames": 20, "atoms": 1725}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0014/files/structure.pdb", "length": 676385, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0014/files/trajectory.xtc", "length": 158640632, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_00.jpg", "length": 26431, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_01.jpg", "length": 26608, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_02.jpg", "length": 26486, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_03.jpg", "length": 26685, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_04.jpg", "length": 26747, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_05.jpg", "length": 27059, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_06.jpg", "length": 26737, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_07.jpg", "length": 26674, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_08.jpg", "length": 26593, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_09.jpg", "length": 26273, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_10.jpg", "length": 26274, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_11.jpg", "length": 26696, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_12.jpg", "length": 26331, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_13.jpg", "length": 26159, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_14.jpg", "length": 26401, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_15.jpg", "length": 26931, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_16.jpg", "length": 26958, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_17.jpg", "length": 26132, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_18.jpg", "length": 26720, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0014/files/clusters_00_screenshot_19.jpg", "length": 26238, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_00.jpg", "length": 26865, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_01.jpg", "length": 26827, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_02.jpg", "length": 26982, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_03.jpg", "length": 26931, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_04.jpg", "length": 27368, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_05.jpg", "length": 26919, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_06.jpg", "length": 26511, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_07.jpg", "length": 26436, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_08.jpg", "length": 27069, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_09.jpg", "length": 26747, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_10.jpg", "length": 27078, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_11.jpg", "length": 26923, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_12.jpg", "length": 26831, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_13.jpg", "length": 26629, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_14.jpg", "length": 26670, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_15.jpg", "length": 26801, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_16.jpg", "length": 26821, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_17.jpg", "length": 26735, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_18.jpg", "length": 26993, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0014/files/clusters_01_screenshot_19.jpg", "length": 27093, "contentType": "application/octet-stream", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0014/files/pocket_01.pdb", "length": 20569, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0014/files/pocket_02.pdb", "length": 17353, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0014/files/pocket_03.pdb", "length": 15343, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0014/files/pocket_04.pdb", "length": 14606, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0014/files/pocket_05.pdb", "length": 14338, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0014/files/pocket_06.pdb", "length": 13869, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0014/files/pocket_07.pdb", "length": 13199, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0014/files/pocket_08.pdb", "length": 12864, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0014/files/pocket_09.pdb", "length": 12529, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0014/files/pocket_10.pdb", "length": 9447, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3b10632a89b6cbbd235c", "md": 0}}]} diff --git a/data/files/A0015/project.json b/data/files/A0015/project.json new file mode 100644 index 0000000000000000000000000000000000000000..46596fed85ec36304d5813505389ee1be1d652fa --- /dev/null +++ b/data/files/A0015/project.json @@ -0,0 +1,190 @@ +{ + "accession": "A0015", + "published": true, + "metadata": { + "NAME": "Dynarepo 1JTD", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1JTD" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P62593", + "O87916" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "PETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW", + "VAATSVVAWGGNNDWGEATVPAEAQSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALKNGKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKG" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Beta-lactamase TEM", + "" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 7838, + "SYSTRES": 535, + "PROTATS": 7838, + "PROTRES": 535, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "protein-protein interaction B-A", + "agent_1": "protein B", + "agent_2": "protein A", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 10.2974, + "BOXSIZEY": 10.2974, + "BOXSIZEZ": 7.25218, + "mdName": "replica 1", + "mdAtoms": 7838, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_00_screenshot_21.jpg", + "clusters_00_screenshot_22.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f3d0c6d9444d2dc316110", + "creationDate": "2025-06-03T18:21:00.000Z", + "identifier": "A0015" +} \ No newline at end of file diff --git a/data/files/A0015/records.jsonl b/data/files/A0015/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..c836ee9bbbcb27a5493db2085f344d0a49410697 --- /dev/null +++ b/data/files/A0015/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A0015", "accession": "A0015", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1JTD", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1JTD"], "FORCED_REFERENCES": null, "REFERENCES": ["P62593", "O87916"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["PETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW", "VAATSVVAWGGNNDWGEATVPAEAQSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALKNGKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKG"], "NUCLSEQ": [], "DOMAINS": ["Beta-lactamase TEM", ""], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 7838, "SYSTRES": 535, "PROTATS": 7838, "PROTRES": 535, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.2974, "BOXSIZEY": 10.2974, "BOXSIZEZ": 7.25218, "mdName": "replica 1", "mdAtoms": 7838, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0015/files/topology.tpr", "length": 2399056, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0015/files/screenshot.jpg", "length": 29621, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0015/files/trajectory.bin", "length": 470374056, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 5001, "atoms": 7838}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_01.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_02.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_03.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_04.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_05.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_06.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_07.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0015/files/structure.pdb", "length": 634913, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0015/files/trajectory.xtc", "length": 149301212, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_00.jpg", "length": 28494, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_01.jpg", "length": 28549, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_02.jpg", "length": 28056, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_03.jpg", "length": 28563, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_04.jpg", "length": 28675, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_05.jpg", "length": 28615, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_06.jpg", "length": 29248, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_07.jpg", "length": 28859, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_08.jpg", "length": 29175, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_09.jpg", "length": 28908, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_10.jpg", "length": 28600, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_11.jpg", "length": 29002, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_12.jpg", "length": 29683, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_13.jpg", "length": 29234, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_14.jpg", "length": 28661, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_15.jpg", "length": 28745, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_16.jpg", "length": 29138, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_17.jpg", "length": 29263, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_18.jpg", "length": 28773, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_19.jpg", "length": 29308, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_20.jpg", "length": 28677, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_21.jpg", "length": 29081, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_22.jpg", "length": 28803, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_00.jpg", "length": 26825, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_01.jpg", "length": 27222, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_02.jpg", "length": 26958, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_03.jpg", "length": 27608, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_04.jpg", "length": 28430, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_05.jpg", "length": 28125, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_06.jpg", "length": 28475, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_07.jpg", "length": 28891, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_08.jpg", "length": 28023, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_09.jpg", "length": 28462, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_10.jpg", "length": 28425, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_11.jpg", "length": 28242, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_12.jpg", "length": 28977, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_13.jpg", "length": 28416, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_14.jpg", "length": 28601, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_15.jpg", "length": 28807, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_16.jpg", "length": 29348, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_17.jpg", "length": 28465, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_18.jpg", "length": 27574, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_19.jpg", "length": 29372, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0015/files/pocket_01.pdb", "length": 37587, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0015/files/pocket_02.pdb", "length": 33969, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0015/files/pocket_03.pdb", "length": 15276, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0015/files/pocket_04.pdb", "length": 11993, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0015/files/pocket_05.pdb", "length": 11926, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0015/files/pocket_06.pdb", "length": 6097, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0015/files/pocket_07.pdb", "length": 5360, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0015/files/pocket_08.pdb", "length": 2345, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}]} +{"project_identifier": "A0015", "accession": "A0015", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1JTD", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1JTD"], "FORCED_REFERENCES": null, "REFERENCES": ["P62593", "O87916"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["PETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW", "VAATSVVAWGGNNDWGEATVPAEAQSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALKNGKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKG"], "NUCLSEQ": [], "DOMAINS": ["Beta-lactamase TEM", ""], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 7838, "SYSTRES": 535, "PROTATS": 7838, "PROTRES": 535, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.2974, "BOXSIZEY": 10.2974, "BOXSIZEZ": 7.25218, "mdName": "replica 1", "mdAtoms": 7838, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0015/files/topology.tpr", "length": 2399056, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0015/files/screenshot.jpg", "length": 29621, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0015/files/trajectory.bin", "length": 470374056, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 5001, "atoms": 7838}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_01.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_02.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_03.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_04.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_05.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_06.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_07.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0015/files/structure.pdb", "length": 634913, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0015/files/trajectory.xtc", "length": 149301212, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_00.jpg", "length": 28494, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_01.jpg", "length": 28549, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_02.jpg", "length": 28056, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_03.jpg", "length": 28563, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_04.jpg", "length": 28675, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_05.jpg", "length": 28615, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_06.jpg", "length": 29248, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_07.jpg", "length": 28859, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_08.jpg", "length": 29175, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_09.jpg", "length": 28908, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_10.jpg", "length": 28600, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_11.jpg", "length": 29002, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_12.jpg", "length": 29683, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_13.jpg", "length": 29234, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_14.jpg", "length": 28661, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_15.jpg", "length": 28745, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_16.jpg", "length": 29138, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_17.jpg", "length": 29263, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_18.jpg", "length": 28773, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_19.jpg", "length": 29308, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_20.jpg", "length": 28677, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_21.jpg", "length": 29081, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_22.jpg", "length": 28803, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_00.jpg", "length": 26825, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_01.jpg", "length": 27222, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_02.jpg", "length": 26958, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_03.jpg", "length": 27608, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_04.jpg", "length": 28430, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_05.jpg", "length": 28125, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_06.jpg", "length": 28475, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_07.jpg", "length": 28891, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_08.jpg", "length": 28023, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_09.jpg", "length": 28462, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_10.jpg", "length": 28425, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_11.jpg", "length": 28242, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_12.jpg", "length": 28977, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_13.jpg", "length": 28416, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_14.jpg", "length": 28601, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_15.jpg", "length": 28807, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_16.jpg", "length": 29348, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_17.jpg", "length": 28465, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_18.jpg", "length": 27574, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_19.jpg", "length": 29372, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0015/files/pocket_01.pdb", "length": 37587, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0015/files/pocket_02.pdb", "length": 33969, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0015/files/pocket_03.pdb", "length": 15276, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0015/files/pocket_04.pdb", "length": 11993, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0015/files/pocket_05.pdb", "length": 11926, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0015/files/pocket_06.pdb", "length": 6097, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0015/files/pocket_07.pdb", "length": 5360, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0015/files/pocket_08.pdb", "length": 2345, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}]} +{"project_identifier": "A0015", "accession": "A0015", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1JTD", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1JTD"], "FORCED_REFERENCES": null, "REFERENCES": ["P62593", "O87916"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["PETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW", "VAATSVVAWGGNNDWGEATVPAEAQSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALKNGKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKG"], "NUCLSEQ": [], "DOMAINS": ["Beta-lactamase TEM", ""], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 7838, "SYSTRES": 535, "PROTATS": 7838, "PROTRES": 535, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction B-A", "agent_1": "protein B", "agent_2": "protein A", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.2974, "BOXSIZEY": 10.2974, "BOXSIZEZ": 7.25218, "mdName": "replica 1", "mdAtoms": 7838, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0015/files/topology.tpr", "length": 2399056, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0015/files/screenshot.jpg", "length": 29621, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0015/files/trajectory.bin", "length": 470374056, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 5001, "atoms": 7838}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_01.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_02.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_03.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_04.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_05.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_06.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0015/files/pca_trajectory_07.bin", "length": 385200, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0, "frames": 20, "atoms": 1605}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0015/files/structure.pdb", "length": 634913, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0015/files/trajectory.xtc", "length": 149301212, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_00.jpg", "length": 28494, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_01.jpg", "length": 28549, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_02.jpg", "length": 28056, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_03.jpg", "length": 28563, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_04.jpg", "length": 28675, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_05.jpg", "length": 28615, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_06.jpg", "length": 29248, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_07.jpg", "length": 28859, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_08.jpg", "length": 29175, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_09.jpg", "length": 28908, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_10.jpg", "length": 28600, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_11.jpg", "length": 29002, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_12.jpg", "length": 29683, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_13.jpg", "length": 29234, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_14.jpg", "length": 28661, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_15.jpg", "length": 28745, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_16.jpg", "length": 29138, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_17.jpg", "length": 29263, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_18.jpg", "length": 28773, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_19.jpg", "length": 29308, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_20.jpg", "length": 28677, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_21.jpg", "length": 29081, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A0015/files/clusters_00_screenshot_22.jpg", "length": 28803, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_00.jpg", "length": 26825, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_01.jpg", "length": 27222, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_02.jpg", "length": 26958, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_03.jpg", "length": 27608, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_04.jpg", "length": 28430, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_05.jpg", "length": 28125, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_06.jpg", "length": 28475, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_07.jpg", "length": 28891, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_08.jpg", "length": 28023, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_09.jpg", "length": 28462, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_10.jpg", "length": 28425, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_11.jpg", "length": 28242, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_12.jpg", "length": 28977, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_13.jpg", "length": 28416, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_14.jpg", "length": 28601, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_15.jpg", "length": 28807, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_16.jpg", "length": 29348, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_17.jpg", "length": 28465, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_18.jpg", "length": 27574, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0015/files/clusters_01_screenshot_19.jpg", "length": 29372, "contentType": "application/octet-stream", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0015/files/pocket_01.pdb", "length": 37587, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0015/files/pocket_02.pdb", "length": 33969, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0015/files/pocket_03.pdb", "length": 15276, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0015/files/pocket_04.pdb", "length": 11993, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0015/files/pocket_05.pdb", "length": 11926, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0015/files/pocket_06.pdb", "length": 6097, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0015/files/pocket_07.pdb", "length": 5360, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0015/files/pocket_08.pdb", "length": 2345, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3d0c6d9444d2dc316110", "md": 0}}]} diff --git a/data/files/A0016/project.json b/data/files/A0016/project.json new file mode 100644 index 0000000000000000000000000000000000000000..09ff1f8d3e5f555209995b689a6cf3988c99dfff --- /dev/null +++ b/data/files/A0016/project.json @@ -0,0 +1,318 @@ +{ + "accession": "A0016", + "published": true, + "metadata": { + "NAME": "Dynarepo 1JWH", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1JWH" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P68400", + "P67870" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGS", + "EVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYXPRVYXENQPMLPIGLSDIPGEAMVKLYXPKXMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAAS", + "SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSS", + "SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYXPRVYXENQPMLPIGLSDIPGEAMVKLYXPKXMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAAS" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Casein kinase II subunit alpha", + "Protein kinase", + "Interaction with beta subunit", + "Casein kinase II subunit beta", + "Interaction with alpha subunit", + "KSSR motif" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 17609, + "SYSTRES": 1075, + "PROTATS": 17609, + "PROTRES": 1075, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "protein-protein interaction A-D", + "agent_1": "protein A", + "agent_2": "protein D", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction A-C", + "agent_1": "protein A", + "agent_2": "protein C", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction B-D", + "agent_1": "protein B", + "agent_2": "protein D", + "selection_1": "chain A", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction B-C", + "agent_1": "protein B", + "agent_2": "protein C", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "protein-protein interaction D-C", + "agent_1": "protein D", + "agent_2": "protein C", + "selection_1": "chain B", + "selection_2": "chain D", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 18.2153, + "BOXSIZEY": 18.2153, + "BOXSIZEZ": 12.8434, + "mdName": "replica 1", + "mdAtoms": 17609, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_01_screenshot_20.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_02_screenshot_18.jpg", + "clusters_02_screenshot_19.jpg", + "clusters_02_screenshot_20.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "clusters_03_screenshot_20.jpg", + "clusters_03_screenshot_21.jpg", + "clusters_04_screenshot_00.jpg", + "clusters_04_screenshot_01.jpg", + "clusters_04_screenshot_02.jpg", + "clusters_04_screenshot_03.jpg", + "clusters_04_screenshot_04.jpg", + "clusters_04_screenshot_05.jpg", + "clusters_04_screenshot_06.jpg", + "clusters_04_screenshot_07.jpg", + "clusters_04_screenshot_08.jpg", + "clusters_04_screenshot_09.jpg", + "clusters_04_screenshot_10.jpg", + "clusters_04_screenshot_11.jpg", + "clusters_04_screenshot_12.jpg", + "clusters_04_screenshot_13.jpg", + "clusters_04_screenshot_14.jpg", + "clusters_04_screenshot_15.jpg", + "clusters_04_screenshot_16.jpg", + "clusters_04_screenshot_17.jpg", + "clusters_04_screenshot_18.jpg", + "clusters_04_screenshot_19.jpg", + "clusters_05_screenshot_00.jpg", + "clusters_05_screenshot_01.jpg", + "clusters_05_screenshot_02.jpg", + "clusters_05_screenshot_03.jpg", + "clusters_05_screenshot_04.jpg", + "clusters_05_screenshot_05.jpg", + "clusters_05_screenshot_06.jpg", + "clusters_05_screenshot_07.jpg", + "clusters_05_screenshot_08.jpg", + "clusters_05_screenshot_09.jpg", + "clusters_05_screenshot_10.jpg", + "clusters_05_screenshot_11.jpg", + "clusters_05_screenshot_12.jpg", + "clusters_05_screenshot_13.jpg", + "clusters_05_screenshot_14.jpg", + "clusters_05_screenshot_15.jpg", + "clusters_05_screenshot_16.jpg", + "clusters_05_screenshot_17.jpg", + "clusters_05_screenshot_18.jpg", + "clusters_05_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "clusters-04", + "clusters-05", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 2, + "internalId": "683f3fd4e82f4ec7d5ececad", + "creationDate": "2025-06-03T18:32:52.000Z", + "identifier": "A0016" +} \ No newline at end of file diff --git a/data/files/A0016/records.jsonl b/data/files/A0016/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..69a12dde14c4cf06e69e16f6d81a75259647b3f1 --- /dev/null +++ b/data/files/A0016/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A0016", "accession": "A0016", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1JWH", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1JWH"], "FORCED_REFERENCES": null, "REFERENCES": ["P68400", "P67870"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGS", "EVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYXPRVYXENQPMLPIGLSDIPGEAMVKLYXPKXMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAAS", "SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSS", "SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYXPRVYXENQPMLPIGLSDIPGEAMVKLYXPKXMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAAS"], "NUCLSEQ": [], "DOMAINS": ["Casein kinase II subunit alpha", "Protein kinase", "Interaction with beta subunit", "Casein kinase II subunit beta", "Interaction with alpha subunit", "KSSR motif"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 17609, "SYSTRES": 1075, "PROTATS": 17609, "PROTRES": 1075, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction A-D", "agent_1": "protein A", "agent_2": "protein D", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction A-C", "agent_1": "protein A", "agent_2": "protein C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction B-D", "agent_1": "protein B", "agent_2": "protein D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction B-C", "agent_1": "protein B", "agent_2": "protein C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction D-C", "agent_1": "protein D", "agent_2": "protein C", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 18.2153, "BOXSIZEY": 18.2153, "BOXSIZEZ": 12.8434, "mdName": "replica 1", "mdAtoms": 17609, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0016/files/topology.tpr", "length": 5617364, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0016/files/screenshot.jpg", "length": 22985, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0016/files/trajectory.bin", "length": 1056751308, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 5001, "atoms": 17609}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_01.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_02.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_03.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_04.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_05.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_06.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_07.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_08.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_09.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_10.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0016/files/structure.pdb", "length": 1426364, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0016/files/trajectory.xtc", "length": 335888300, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_00.jpg", "length": 23078, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_01.jpg", "length": 23058, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_02.jpg", "length": 23193, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_03.jpg", "length": 22994, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_04.jpg", "length": 22837, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_05.jpg", "length": 22855, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_06.jpg", "length": 22634, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_07.jpg", "length": 22312, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_08.jpg", "length": 22818, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_09.jpg", "length": 22745, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_10.jpg", "length": 23270, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_11.jpg", "length": 22099, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_12.jpg", "length": 23028, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_13.jpg", "length": 23201, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_14.jpg", "length": 23395, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_15.jpg", "length": 22013, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_16.jpg", "length": 23450, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_17.jpg", "length": 23034, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_18.jpg", "length": 23591, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_19.jpg", "length": 23321, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_00.jpg", "length": 21223, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_01.jpg", "length": 21750, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_02.jpg", "length": 20641, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_03.jpg", "length": 21470, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_04.jpg", "length": 20682, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_05.jpg", "length": 20654, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_06.jpg", "length": 20516, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_07.jpg", "length": 20280, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_08.jpg", "length": 20685, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_09.jpg", "length": 21276, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_10.jpg", "length": 20623, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_11.jpg", "length": 20840, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_12.jpg", "length": 21378, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_13.jpg", "length": 21014, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_14.jpg", "length": 21204, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_15.jpg", "length": 21290, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_16.jpg", "length": 21423, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_17.jpg", "length": 21179, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_18.jpg", "length": 21352, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_19.jpg", "length": 21447, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_20.jpg", "length": 21491, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_00.jpg", "length": 22657, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_01.jpg", "length": 22483, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_02.jpg", "length": 22354, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_03.jpg", "length": 22328, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_04.jpg", "length": 22161, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_05.jpg", "length": 22892, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_06.jpg", "length": 21448, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_07.jpg", "length": 21538, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_08.jpg", "length": 21479, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_09.jpg", "length": 21776, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_10.jpg", "length": 21325, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_11.jpg", "length": 21428, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_12.jpg", "length": 22705, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_13.jpg", "length": 20878, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_14.jpg", "length": 22261, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_15.jpg", "length": 22454, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_16.jpg", "length": 22386, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_17.jpg", "length": 22473, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_18.jpg", "length": 22426, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_19.jpg", "length": 22793, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_20.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_20.jpg", "length": 22661, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_00.jpg", "length": 20427, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_01.jpg", "length": 20815, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_02.jpg", "length": 20766, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_03.jpg", "length": 20638, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_04.jpg", "length": 20621, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_05.jpg", "length": 20592, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_06.jpg", "length": 20753, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_07.jpg", "length": 20622, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_08.jpg", "length": 20250, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_09.jpg", "length": 20075, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_10.jpg", "length": 20635, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_11.jpg", "length": 20361, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_12.jpg", "length": 20437, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_13.jpg", "length": 21304, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_14.jpg", "length": 20838, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_15.jpg", "length": 21043, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_16.jpg", "length": 21191, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_17.jpg", "length": 21168, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_18.jpg", "length": 19740, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_19.jpg", "length": 20965, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_20.jpg", "length": 20554, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_21.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_21.jpg", "length": 21246, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_00.jpg", "length": 23259, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_01.jpg", "length": 22970, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_02.jpg", "length": 23427, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_03.jpg", "length": 22069, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_04.jpg", "length": 22694, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_05.jpg", "length": 22592, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_06.jpg", "length": 23839, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_07.jpg", "length": 22452, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_08.jpg", "length": 23155, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_09.jpg", "length": 22336, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_10.jpg", "length": 22484, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_11.jpg", "length": 23110, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_12.jpg", "length": 23247, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_13.jpg", "length": 22938, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_14.jpg", "length": 23564, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_15.jpg", "length": 23017, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_16.jpg", "length": 23581, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_17.jpg", "length": 23546, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_18.jpg", "length": 23219, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_19.jpg", "length": 23895, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_00.jpg", "length": 22650, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_01.jpg", "length": 22421, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_02.jpg", "length": 22085, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_03.jpg", "length": 22412, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_04.jpg", "length": 21541, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_05.jpg", "length": 22281, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_06.jpg", "length": 22175, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_07.jpg", "length": 23021, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_08.jpg", "length": 22368, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_09.jpg", "length": 22311, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_10.jpg", "length": 22687, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_11.jpg", "length": 22737, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_12.jpg", "length": 22882, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_13.jpg", "length": 22663, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_14.jpg", "length": 22888, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_15.jpg", "length": 22871, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_16.jpg", "length": 22704, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_17.jpg", "length": 22702, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_18.jpg", "length": 22736, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_19.jpg", "length": 23020, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0016/files/pocket_01.pdb", "length": 21641, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0016/files/pocket_02.pdb", "length": 19095, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0016/files/pocket_03.pdb", "length": 18894, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0016/files/pocket_04.pdb", "length": 17554, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0016/files/pocket_05.pdb", "length": 12328, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0016/files/pocket_06.pdb", "length": 11926, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0016/files/pocket_07.pdb", "length": 10988, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0016/files/pocket_08.pdb", "length": 10653, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0016/files/pocket_09.pdb", "length": 5762, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0016/files/pocket_10.pdb", "length": 4355, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}]} +{"project_identifier": "A0016", "accession": "A0016", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1JWH", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1JWH"], "FORCED_REFERENCES": null, "REFERENCES": ["P68400", "P67870"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGS", "EVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYXPRVYXENQPMLPIGLSDIPGEAMVKLYXPKXMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAAS", "SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSS", "SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYXPRVYXENQPMLPIGLSDIPGEAMVKLYXPKXMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAAS"], "NUCLSEQ": [], "DOMAINS": ["Casein kinase II subunit alpha", "Protein kinase", "Interaction with beta subunit", "Casein kinase II subunit beta", "Interaction with alpha subunit", "KSSR motif"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 17609, "SYSTRES": 1075, "PROTATS": 17609, "PROTRES": 1075, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction A-D", "agent_1": "protein A", "agent_2": "protein D", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction A-C", "agent_1": "protein A", "agent_2": "protein C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction B-D", "agent_1": "protein B", "agent_2": "protein D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction B-C", "agent_1": "protein B", "agent_2": "protein C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction D-C", "agent_1": "protein D", "agent_2": "protein C", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 18.2153, "BOXSIZEY": 18.2153, "BOXSIZEZ": 12.8434, "mdName": "replica 1", "mdAtoms": 17609, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0016/files/topology.tpr", "length": 5617364, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0016/files/screenshot.jpg", "length": 22985, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0016/files/trajectory.bin", "length": 1056751308, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 5001, "atoms": 17609}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_01.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_02.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_03.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_04.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_05.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_06.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_07.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_08.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_09.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_10.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0016/files/structure.pdb", "length": 1426364, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0016/files/trajectory.xtc", "length": 335888300, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_00.jpg", "length": 23078, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_01.jpg", "length": 23058, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_02.jpg", "length": 23193, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_03.jpg", "length": 22994, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_04.jpg", "length": 22837, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_05.jpg", "length": 22855, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_06.jpg", "length": 22634, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_07.jpg", "length": 22312, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_08.jpg", "length": 22818, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_09.jpg", "length": 22745, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_10.jpg", "length": 23270, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_11.jpg", "length": 22099, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_12.jpg", "length": 23028, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_13.jpg", "length": 23201, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_14.jpg", "length": 23395, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_15.jpg", "length": 22013, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_16.jpg", "length": 23450, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_17.jpg", "length": 23034, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_18.jpg", "length": 23591, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_19.jpg", "length": 23321, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_00.jpg", "length": 21223, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_01.jpg", "length": 21750, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_02.jpg", "length": 20641, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_03.jpg", "length": 21470, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_04.jpg", "length": 20682, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_05.jpg", "length": 20654, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_06.jpg", "length": 20516, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_07.jpg", "length": 20280, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_08.jpg", "length": 20685, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_09.jpg", "length": 21276, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_10.jpg", "length": 20623, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_11.jpg", "length": 20840, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_12.jpg", "length": 21378, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_13.jpg", "length": 21014, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_14.jpg", "length": 21204, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_15.jpg", "length": 21290, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_16.jpg", "length": 21423, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_17.jpg", "length": 21179, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_18.jpg", "length": 21352, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_19.jpg", "length": 21447, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_20.jpg", "length": 21491, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_00.jpg", "length": 22657, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_01.jpg", "length": 22483, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_02.jpg", "length": 22354, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_03.jpg", "length": 22328, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_04.jpg", "length": 22161, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_05.jpg", "length": 22892, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_06.jpg", "length": 21448, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_07.jpg", "length": 21538, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_08.jpg", "length": 21479, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_09.jpg", "length": 21776, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_10.jpg", "length": 21325, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_11.jpg", "length": 21428, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_12.jpg", "length": 22705, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_13.jpg", "length": 20878, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_14.jpg", "length": 22261, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_15.jpg", "length": 22454, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_16.jpg", "length": 22386, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_17.jpg", "length": 22473, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_18.jpg", "length": 22426, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_19.jpg", "length": 22793, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_20.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_20.jpg", "length": 22661, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_00.jpg", "length": 20427, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_01.jpg", "length": 20815, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_02.jpg", "length": 20766, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_03.jpg", "length": 20638, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_04.jpg", "length": 20621, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_05.jpg", "length": 20592, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_06.jpg", "length": 20753, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_07.jpg", "length": 20622, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_08.jpg", "length": 20250, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_09.jpg", "length": 20075, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_10.jpg", "length": 20635, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_11.jpg", "length": 20361, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_12.jpg", "length": 20437, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_13.jpg", "length": 21304, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_14.jpg", "length": 20838, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_15.jpg", "length": 21043, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_16.jpg", "length": 21191, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_17.jpg", "length": 21168, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_18.jpg", "length": 19740, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_19.jpg", "length": 20965, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_20.jpg", "length": 20554, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_21.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_21.jpg", "length": 21246, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_00.jpg", "length": 23259, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_01.jpg", "length": 22970, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_02.jpg", "length": 23427, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_03.jpg", "length": 22069, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_04.jpg", "length": 22694, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_05.jpg", "length": 22592, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_06.jpg", "length": 23839, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_07.jpg", "length": 22452, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_08.jpg", "length": 23155, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_09.jpg", "length": 22336, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_10.jpg", "length": 22484, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_11.jpg", "length": 23110, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_12.jpg", "length": 23247, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_13.jpg", "length": 22938, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_14.jpg", "length": 23564, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_15.jpg", "length": 23017, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_16.jpg", "length": 23581, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_17.jpg", "length": 23546, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_18.jpg", "length": 23219, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_19.jpg", "length": 23895, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_00.jpg", "length": 22650, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_01.jpg", "length": 22421, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_02.jpg", "length": 22085, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_03.jpg", "length": 22412, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_04.jpg", "length": 21541, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_05.jpg", "length": 22281, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_06.jpg", "length": 22175, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_07.jpg", "length": 23021, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_08.jpg", "length": 22368, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_09.jpg", "length": 22311, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_10.jpg", "length": 22687, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_11.jpg", "length": 22737, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_12.jpg", "length": 22882, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_13.jpg", "length": 22663, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_14.jpg", "length": 22888, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_15.jpg", "length": 22871, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_16.jpg", "length": 22704, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_17.jpg", "length": 22702, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_18.jpg", "length": 22736, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_19.jpg", "length": 23020, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0016/files/pocket_01.pdb", "length": 21641, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0016/files/pocket_02.pdb", "length": 19095, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0016/files/pocket_03.pdb", "length": 18894, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0016/files/pocket_04.pdb", "length": 17554, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0016/files/pocket_05.pdb", "length": 12328, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0016/files/pocket_06.pdb", "length": 11926, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0016/files/pocket_07.pdb", "length": 10988, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0016/files/pocket_08.pdb", "length": 10653, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0016/files/pocket_09.pdb", "length": 5762, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0016/files/pocket_10.pdb", "length": 4355, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}]} +{"project_identifier": "A0016", "accession": "A0016", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1JWH", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1JWH"], "FORCED_REFERENCES": null, "REFERENCES": ["P68400", "P67870"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGS", "EVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYXPRVYXENQPMLPIGLSDIPGEAMVKLYXPKXMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAAS", "SGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSS", "SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYXPRVYXENQPMLPIGLSDIPGEAMVKLYXPKXMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQLQLQAAS"], "NUCLSEQ": [], "DOMAINS": ["Casein kinase II subunit alpha", "Protein kinase", "Interaction with beta subunit", "Casein kinase II subunit beta", "Interaction with alpha subunit", "KSSR motif"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 17609, "SYSTRES": 1075, "PROTATS": 17609, "PROTRES": 1075, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "protein-protein interaction A-D", "agent_1": "protein A", "agent_2": "protein D", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "protein-protein interaction A-C", "agent_1": "protein A", "agent_2": "protein C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction B-D", "agent_1": "protein B", "agent_2": "protein D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "protein-protein interaction B-C", "agent_1": "protein B", "agent_2": "protein C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "protein-protein interaction D-C", "agent_1": "protein D", "agent_2": "protein C", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 18.2153, "BOXSIZEY": 18.2153, "BOXSIZEZ": 12.8434, "mdName": "replica 1", "mdAtoms": 17609, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0016/files/topology.tpr", "length": 5617364, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0016/files/screenshot.jpg", "length": 22985, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0016/files/trajectory.bin", "length": 1056751308, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 5001, "atoms": 17609}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_01.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_02.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_03.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_04.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_05.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_06.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_07.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_08.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_09.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0016/files/pca_trajectory_10.bin", "length": 774000, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0, "frames": 20, "atoms": 3225}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0016/files/structure.pdb", "length": 1426364, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0016/files/trajectory.xtc", "length": 335888300, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_00.jpg", "length": 23078, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_01.jpg", "length": 23058, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_02.jpg", "length": 23193, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_03.jpg", "length": 22994, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_04.jpg", "length": 22837, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_05.jpg", "length": 22855, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_06.jpg", "length": 22634, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_07.jpg", "length": 22312, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_08.jpg", "length": 22818, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_09.jpg", "length": 22745, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_10.jpg", "length": 23270, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_11.jpg", "length": 22099, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_12.jpg", "length": 23028, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_13.jpg", "length": 23201, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_14.jpg", "length": 23395, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_15.jpg", "length": 22013, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_16.jpg", "length": 23450, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_17.jpg", "length": 23034, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_18.jpg", "length": 23591, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_00_screenshot_19.jpg", "length": 23321, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_00.jpg", "length": 21223, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_01.jpg", "length": 21750, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_02.jpg", "length": 20641, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_03.jpg", "length": 21470, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_04.jpg", "length": 20682, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_05.jpg", "length": 20654, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_06.jpg", "length": 20516, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_07.jpg", "length": 20280, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_08.jpg", "length": 20685, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_09.jpg", "length": 21276, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_10.jpg", "length": 20623, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_11.jpg", "length": 20840, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_12.jpg", "length": 21378, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_13.jpg", "length": 21014, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_14.jpg", "length": 21204, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_15.jpg", "length": 21290, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_16.jpg", "length": 21423, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_17.jpg", "length": 21179, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_18.jpg", "length": 21352, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_19.jpg", "length": 21447, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0016/files/clusters_01_screenshot_20.jpg", "length": 21491, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_00.jpg", "length": 22657, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_01.jpg", "length": 22483, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_02.jpg", "length": 22354, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_03.jpg", "length": 22328, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_04.jpg", "length": 22161, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_05.jpg", "length": 22892, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_06.jpg", "length": 21448, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_07.jpg", "length": 21538, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_08.jpg", "length": 21479, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_09.jpg", "length": 21776, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_10.jpg", "length": 21325, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_11.jpg", "length": 21428, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_12.jpg", "length": 22705, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_13.jpg", "length": 20878, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_14.jpg", "length": 22261, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_15.jpg", "length": 22454, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_16.jpg", "length": 22386, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_17.jpg", "length": 22473, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_18.jpg", "length": 22426, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_19.jpg", "length": 22793, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_02_screenshot_20.jpg", "downloadUrl": "/projects/A0016/files/clusters_02_screenshot_20.jpg", "length": 22661, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_00.jpg", "length": 20427, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_01.jpg", "length": 20815, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_02.jpg", "length": 20766, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_03.jpg", "length": 20638, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_04.jpg", "length": 20621, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_05.jpg", "length": 20592, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_06.jpg", "length": 20753, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_07.jpg", "length": 20622, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_08.jpg", "length": 20250, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_09.jpg", "length": 20075, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_10.jpg", "length": 20635, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_11.jpg", "length": 20361, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_12.jpg", "length": 20437, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_13.jpg", "length": 21304, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_14.jpg", "length": 20838, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_15.jpg", "length": 21043, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_16.jpg", "length": 21191, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_17.jpg", "length": 21168, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_18.jpg", "length": 19740, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_19.jpg", "length": 20965, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_20.jpg", "length": 20554, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_03_screenshot_21.jpg", "downloadUrl": "/projects/A0016/files/clusters_03_screenshot_21.jpg", "length": 21246, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_00.jpg", "length": 23259, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_01.jpg", "length": 22970, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_02.jpg", "length": 23427, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_03.jpg", "length": 22069, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_04.jpg", "length": 22694, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_05.jpg", "length": 22592, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_06.jpg", "length": 23839, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_07.jpg", "length": 22452, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_08.jpg", "length": 23155, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_09.jpg", "length": 22336, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_10.jpg", "length": 22484, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_11.jpg", "length": 23110, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_12.jpg", "length": 23247, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_13.jpg", "length": 22938, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_14.jpg", "length": 23564, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_15.jpg", "length": 23017, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_16.jpg", "length": 23581, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_17.jpg", "length": 23546, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_18.jpg", "length": 23219, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_04_screenshot_19.jpg", "length": 23895, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_00.jpg", "length": 22650, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_01.jpg", "length": 22421, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_02.jpg", "length": 22085, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_03.jpg", "length": 22412, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_04.jpg", "length": 21541, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_05.jpg", "length": 22281, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_06.jpg", "length": 22175, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_07.jpg", "length": 23021, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_08.jpg", "length": 22368, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_09.jpg", "length": 22311, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_10.jpg", "length": 22687, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_11.jpg", "length": 22737, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_12.jpg", "length": 22882, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_13.jpg", "length": 22663, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_14.jpg", "length": 22888, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_15.jpg", "length": 22871, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_16.jpg", "length": 22704, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_17.jpg", "length": 22702, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_18.jpg", "length": 22736, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A0016/files/clusters_05_screenshot_19.jpg", "length": 23020, "contentType": "application/octet-stream", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0016/files/pocket_01.pdb", "length": 21641, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0016/files/pocket_02.pdb", "length": 19095, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0016/files/pocket_03.pdb", "length": 18894, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0016/files/pocket_04.pdb", "length": 17554, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0016/files/pocket_05.pdb", "length": 12328, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0016/files/pocket_06.pdb", "length": 11926, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0016/files/pocket_07.pdb", "length": 10988, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0016/files/pocket_08.pdb", "length": 10653, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0016/files/pocket_09.pdb", "length": 5762, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0016/files/pocket_10.pdb", "length": 4355, "contentType": "chemical/x-pdb", "metadata": {"project": "683f3fd4e82f4ec7d5ececad", "md": 0}}]} diff --git a/data/files/A0017/project.json b/data/files/A0017/project.json new file mode 100644 index 0000000000000000000000000000000000000000..c69785b706fd449db62a6184049ef88aeab0a6da --- /dev/null +++ b/data/files/A0017/project.json @@ -0,0 +1,263 @@ +{ + "accession": "A0017", + "published": true, + "metadata": { + "NAME": "Dynarepo 1K5D", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1K5D" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P62826", + "P43487", + "P41391" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "NHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREK", + "QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDED", + "ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "GTP-binding nuclear protein Ran", + "Interaction with RANBP1", + "Essential for GTP hydrolysis", + "Ran-specific GTPase-activating protein", + "RanBD1", + "Disordered", + "Ran GTPase-activating protein 1", + "Disordered", + "Critical residue for GTP hydrolysis" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 11179, + "SYSTRES": 696, + "PROTATS": 11179, + "PROTRES": 696, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "chain A-chain C interaction", + "agent_1": "chain A", + "agent_2": "chain C", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain B-chain C interaction", + "agent_1": "chain B", + "agent_2": "chain C", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 12.7499, + "BOXSIZEY": 12.7499, + "BOXSIZEZ": 9.02727, + "mdName": "replica 1", + "mdAtoms": 11179, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_01_screenshot_20.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_02_screenshot_18.jpg", + "clusters_02_screenshot_19.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f431894c5b2a431903d8d", + "creationDate": "2025-06-03T18:46:48.000Z", + "identifier": "A0017" +} \ No newline at end of file diff --git a/data/files/A0017/records.jsonl b/data/files/A0017/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..08c2b69875e9c2cde75f7858c5a8bed866b4c8f9 --- /dev/null +++ b/data/files/A0017/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A0017", "accession": "A0017", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1K5D", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1K5D"], "FORCED_REFERENCES": null, "REFERENCES": ["P62826", "P43487", "P41391"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["NHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREK", "QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDED", "ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE"], "NUCLSEQ": [], "DOMAINS": ["GTP-binding nuclear protein Ran", "Interaction with RANBP1", "Essential for GTP hydrolysis", "Ran-specific GTPase-activating protein", "RanBD1", "Disordered", "Ran GTPase-activating protein 1", "Disordered", "Critical residue for GTP hydrolysis"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 11179, "SYSTRES": 696, "PROTATS": 11179, "PROTRES": 696, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.7499, "BOXSIZEY": 12.7499, "BOXSIZEZ": 9.02727, "mdName": "replica 1", "mdAtoms": 11179, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0017/files/topology.tpr", "length": 3415632, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0017/files/screenshot.jpg", "length": 25246, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0017/files/trajectory.bin", "length": 670874148, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 5001, "atoms": 11179}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_01.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_02.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_03.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_04.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_05.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_06.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_07.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_08.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_09.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_10.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_11.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_12.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_13.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0017/files/structure.pdb", "length": 905534, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0017/files/trajectory.xtc", "length": 212506820, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_00.jpg", "length": 24527, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_01.jpg", "length": 24177, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_02.jpg", "length": 24572, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_03.jpg", "length": 24708, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_04.jpg", "length": 24820, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_05.jpg", "length": 25024, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_06.jpg", "length": 24827, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_07.jpg", "length": 25279, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_08.jpg", "length": 25035, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_09.jpg", "length": 24864, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_10.jpg", "length": 24748, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_11.jpg", "length": 24483, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_12.jpg", "length": 24454, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_13.jpg", "length": 24835, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_14.jpg", "length": 24867, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_15.jpg", "length": 24974, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_16.jpg", "length": 24870, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_17.jpg", "length": 24940, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_18.jpg", "length": 24530, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_19.jpg", "length": 25276, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_00.jpg", "length": 26384, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_01.jpg", "length": 25936, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_02.jpg", "length": 26140, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_03.jpg", "length": 26670, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_04.jpg", "length": 26568, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_05.jpg", "length": 26415, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_06.jpg", "length": 26308, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_07.jpg", "length": 26318, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_08.jpg", "length": 26637, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_09.jpg", "length": 26239, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_10.jpg", "length": 26092, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_11.jpg", "length": 26752, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_12.jpg", "length": 26078, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_13.jpg", "length": 26497, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_14.jpg", "length": 26446, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_15.jpg", "length": 26195, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_16.jpg", "length": 26539, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_17.jpg", "length": 26244, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_18.jpg", "length": 26157, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_19.jpg", "length": 26210, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_20.jpg", "length": 26426, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_00.jpg", "length": 24558, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_01.jpg", "length": 24786, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_02.jpg", "length": 24701, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_03.jpg", "length": 24664, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_04.jpg", "length": 25080, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_05.jpg", "length": 24252, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_06.jpg", "length": 25201, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_07.jpg", "length": 24854, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_08.jpg", "length": 24983, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_09.jpg", "length": 24767, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_10.jpg", "length": 24884, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_11.jpg", "length": 24904, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_12.jpg", "length": 24654, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_13.jpg", "length": 25121, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_14.jpg", "length": 25107, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_15.jpg", "length": 24460, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_16.jpg", "length": 25130, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_17.jpg", "length": 25029, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_18.jpg", "length": 25107, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_19.jpg", "length": 24941, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_00.jpg", "length": 25321, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_01.jpg", "length": 25310, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_02.jpg", "length": 25419, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_03.jpg", "length": 25336, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_04.jpg", "length": 25821, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_05.jpg", "length": 25186, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_06.jpg", "length": 26035, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_07.jpg", "length": 25836, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_08.jpg", "length": 25752, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_09.jpg", "length": 25653, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_10.jpg", "length": 25396, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_11.jpg", "length": 25560, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_12.jpg", "length": 25535, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_13.jpg", "length": 25194, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_14.jpg", "length": 25627, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_15.jpg", "length": 25855, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_16.jpg", "length": 26023, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_17.jpg", "length": 25373, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_18.jpg", "length": 26015, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_19.jpg", "length": 25718, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0017/files/pocket_01.pdb", "length": 27604, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0017/files/pocket_02.pdb", "length": 24656, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0017/files/pocket_03.pdb", "length": 24120, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0017/files/pocket_04.pdb", "length": 23517, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0017/files/pocket_05.pdb", "length": 15812, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0017/files/pocket_06.pdb", "length": 14874, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0017/files/pocket_07.pdb", "length": 14338, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0017/files/pocket_08.pdb", "length": 14204, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0017/files/pocket_09.pdb", "length": 13601, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0017/files/pocket_10.pdb", "length": 12864, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}]} +{"project_identifier": "A0017", "accession": "A0017", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1K5D", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1K5D"], "FORCED_REFERENCES": null, "REFERENCES": ["P62826", "P43487", "P41391"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["NHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREK", "QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDED", "ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE"], "NUCLSEQ": [], "DOMAINS": ["GTP-binding nuclear protein Ran", "Interaction with RANBP1", "Essential for GTP hydrolysis", "Ran-specific GTPase-activating protein", "RanBD1", "Disordered", "Ran GTPase-activating protein 1", "Disordered", "Critical residue for GTP hydrolysis"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 11179, "SYSTRES": 696, "PROTATS": 11179, "PROTRES": 696, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.7499, "BOXSIZEY": 12.7499, "BOXSIZEZ": 9.02727, "mdName": "replica 1", "mdAtoms": 11179, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0017/files/topology.tpr", "length": 3415632, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0017/files/screenshot.jpg", "length": 25246, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0017/files/trajectory.bin", "length": 670874148, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 5001, "atoms": 11179}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_01.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_02.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_03.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_04.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_05.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_06.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_07.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_08.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_09.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_10.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_11.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_12.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_13.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0017/files/structure.pdb", "length": 905534, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0017/files/trajectory.xtc", "length": 212506820, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_00.jpg", "length": 24527, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_01.jpg", "length": 24177, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_02.jpg", "length": 24572, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_03.jpg", "length": 24708, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_04.jpg", "length": 24820, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_05.jpg", "length": 25024, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_06.jpg", "length": 24827, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_07.jpg", "length": 25279, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_08.jpg", "length": 25035, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_09.jpg", "length": 24864, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_10.jpg", "length": 24748, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_11.jpg", "length": 24483, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_12.jpg", "length": 24454, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_13.jpg", "length": 24835, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_14.jpg", "length": 24867, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_15.jpg", "length": 24974, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_16.jpg", "length": 24870, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_17.jpg", "length": 24940, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_18.jpg", "length": 24530, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_19.jpg", "length": 25276, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_00.jpg", "length": 26384, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_01.jpg", "length": 25936, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_02.jpg", "length": 26140, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_03.jpg", "length": 26670, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_04.jpg", "length": 26568, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_05.jpg", "length": 26415, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_06.jpg", "length": 26308, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_07.jpg", "length": 26318, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_08.jpg", "length": 26637, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_09.jpg", "length": 26239, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_10.jpg", "length": 26092, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_11.jpg", "length": 26752, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_12.jpg", "length": 26078, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_13.jpg", "length": 26497, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_14.jpg", "length": 26446, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_15.jpg", "length": 26195, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_16.jpg", "length": 26539, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_17.jpg", "length": 26244, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_18.jpg", "length": 26157, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_19.jpg", "length": 26210, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_20.jpg", "length": 26426, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_00.jpg", "length": 24558, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_01.jpg", "length": 24786, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_02.jpg", "length": 24701, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_03.jpg", "length": 24664, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_04.jpg", "length": 25080, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_05.jpg", "length": 24252, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_06.jpg", "length": 25201, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_07.jpg", "length": 24854, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_08.jpg", "length": 24983, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_09.jpg", "length": 24767, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_10.jpg", "length": 24884, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_11.jpg", "length": 24904, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_12.jpg", "length": 24654, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_13.jpg", "length": 25121, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_14.jpg", "length": 25107, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_15.jpg", "length": 24460, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_16.jpg", "length": 25130, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_17.jpg", "length": 25029, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_18.jpg", "length": 25107, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_19.jpg", "length": 24941, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_00.jpg", "length": 25321, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_01.jpg", "length": 25310, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_02.jpg", "length": 25419, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_03.jpg", "length": 25336, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_04.jpg", "length": 25821, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_05.jpg", "length": 25186, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_06.jpg", "length": 26035, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_07.jpg", "length": 25836, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_08.jpg", "length": 25752, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_09.jpg", "length": 25653, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_10.jpg", "length": 25396, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_11.jpg", "length": 25560, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_12.jpg", "length": 25535, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_13.jpg", "length": 25194, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_14.jpg", "length": 25627, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_15.jpg", "length": 25855, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_16.jpg", "length": 26023, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_17.jpg", "length": 25373, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_18.jpg", "length": 26015, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_19.jpg", "length": 25718, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0017/files/pocket_01.pdb", "length": 27604, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0017/files/pocket_02.pdb", "length": 24656, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0017/files/pocket_03.pdb", "length": 24120, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0017/files/pocket_04.pdb", "length": 23517, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0017/files/pocket_05.pdb", "length": 15812, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0017/files/pocket_06.pdb", "length": 14874, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0017/files/pocket_07.pdb", "length": 14338, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0017/files/pocket_08.pdb", "length": 14204, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0017/files/pocket_09.pdb", "length": 13601, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0017/files/pocket_10.pdb", "length": 12864, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}]} +{"project_identifier": "A0017", "accession": "A0017", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1K5D", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1K5D"], "FORCED_REFERENCES": null, "REFERENCES": ["P62826", "P43487", "P41391"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["NHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREK", "QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDED", "ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE"], "NUCLSEQ": [], "DOMAINS": ["GTP-binding nuclear protein Ran", "Interaction with RANBP1", "Essential for GTP hydrolysis", "Ran-specific GTPase-activating protein", "RanBD1", "Disordered", "Ran GTPase-activating protein 1", "Disordered", "Critical residue for GTP hydrolysis"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 11179, "SYSTRES": 696, "PROTATS": 11179, "PROTRES": 696, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.7499, "BOXSIZEY": 12.7499, "BOXSIZEZ": 9.02727, "mdName": "replica 1", "mdAtoms": 11179, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0017/files/topology.tpr", "length": 3415632, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0017/files/screenshot.jpg", "length": 25246, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0017/files/trajectory.bin", "length": 670874148, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 5001, "atoms": 11179}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_01.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_02.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_03.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_04.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_05.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_06.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_07.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_08.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_09.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_10.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_11.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_12.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0017/files/pca_trajectory_13.bin", "length": 501120, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0, "frames": 20, "atoms": 2088}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0017/files/structure.pdb", "length": 905534, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0017/files/trajectory.xtc", "length": 212506820, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_00.jpg", "length": 24527, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_01.jpg", "length": 24177, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_02.jpg", "length": 24572, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_03.jpg", "length": 24708, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_04.jpg", "length": 24820, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_05.jpg", "length": 25024, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_06.jpg", "length": 24827, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_07.jpg", "length": 25279, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_08.jpg", "length": 25035, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_09.jpg", "length": 24864, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_10.jpg", "length": 24748, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_11.jpg", "length": 24483, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_12.jpg", "length": 24454, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_13.jpg", "length": 24835, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_14.jpg", "length": 24867, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_15.jpg", "length": 24974, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_16.jpg", "length": 24870, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_17.jpg", "length": 24940, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_18.jpg", "length": 24530, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_00_screenshot_19.jpg", "length": 25276, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_00.jpg", "length": 26384, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_01.jpg", "length": 25936, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_02.jpg", "length": 26140, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_03.jpg", "length": 26670, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_04.jpg", "length": 26568, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_05.jpg", "length": 26415, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_06.jpg", "length": 26308, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_07.jpg", "length": 26318, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_08.jpg", "length": 26637, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_09.jpg", "length": 26239, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_10.jpg", "length": 26092, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_11.jpg", "length": 26752, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_12.jpg", "length": 26078, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_13.jpg", "length": 26497, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_14.jpg", "length": 26446, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_15.jpg", "length": 26195, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_16.jpg", "length": 26539, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_17.jpg", "length": 26244, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_18.jpg", "length": 26157, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_19.jpg", "length": 26210, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0017/files/clusters_01_screenshot_20.jpg", "length": 26426, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_00.jpg", "length": 24558, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_01.jpg", "length": 24786, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_02.jpg", "length": 24701, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_03.jpg", "length": 24664, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_04.jpg", "length": 25080, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_05.jpg", "length": 24252, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_06.jpg", "length": 25201, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_07.jpg", "length": 24854, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_08.jpg", "length": 24983, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_09.jpg", "length": 24767, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_10.jpg", "length": 24884, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_11.jpg", "length": 24904, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_12.jpg", "length": 24654, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_13.jpg", "length": 25121, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_14.jpg", "length": 25107, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_15.jpg", "length": 24460, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_16.jpg", "length": 25130, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_17.jpg", "length": 25029, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_18.jpg", "length": 25107, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_02_screenshot_19.jpg", "length": 24941, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_00.jpg", "length": 25321, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_01.jpg", "length": 25310, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_02.jpg", "length": 25419, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_03.jpg", "length": 25336, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_04.jpg", "length": 25821, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_05.jpg", "length": 25186, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_06.jpg", "length": 26035, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_07.jpg", "length": 25836, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_08.jpg", "length": 25752, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_09.jpg", "length": 25653, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_10.jpg", "length": 25396, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_11.jpg", "length": 25560, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_12.jpg", "length": 25535, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_13.jpg", "length": 25194, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_14.jpg", "length": 25627, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_15.jpg", "length": 25855, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_16.jpg", "length": 26023, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_17.jpg", "length": 25373, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_18.jpg", "length": 26015, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0017/files/clusters_03_screenshot_19.jpg", "length": 25718, "contentType": "application/octet-stream", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0017/files/pocket_01.pdb", "length": 27604, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0017/files/pocket_02.pdb", "length": 24656, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0017/files/pocket_03.pdb", "length": 24120, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0017/files/pocket_04.pdb", "length": 23517, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0017/files/pocket_05.pdb", "length": 15812, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0017/files/pocket_06.pdb", "length": 14874, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0017/files/pocket_07.pdb", "length": 14338, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0017/files/pocket_08.pdb", "length": 14204, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0017/files/pocket_09.pdb", "length": 13601, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A0017/files/pocket_10.pdb", "length": 12864, "contentType": "chemical/x-pdb", "metadata": {"project": "683f431894c5b2a431903d8d", "md": 0}}]} diff --git a/data/files/A0018/project.json b/data/files/A0018/project.json new file mode 100644 index 0000000000000000000000000000000000000000..efc62b26eb74a9c5e439ebf4fc04aa788c5bf645 --- /dev/null +++ b/data/files/A0018/project.json @@ -0,0 +1,200 @@ +{ + "accession": "A0018", + "published": true, + "metadata": { + "NAME": "Dynarepo 1KAC", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1KAC" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P36711", + "P78310" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "GITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKPSGA", + "TPYDPLTLWTTPDPPPNCSLIQELDAKLTLCLTKNGSIVNGIVSLVGVKGNLLNIQSTTTTVGVHLVFDEQGRLITSTPTALVPQASWGYRQGQSVSTNTVTNGLGFMPNVSAYPRPNASEAKSQMVSLTYLQGDTSKPITMKVAFNGITSLNGYSLTFMWSGLSNYINQPFSTPSCSFSYITQE" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Fiber protein", + "Coxsackievirus and adenovirus receptor", + "Ig-like C2-type 1", + "Ig-like C2-type 2" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 4718, + "SYSTRES": 309, + "PROTATS": 4718, + "PROTRES": 309, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 9.93136, + "BOXSIZEY": 9.93136, + "BOXSIZEZ": 7.03317, + "mdName": "replica 1", + "mdAtoms": 4718, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "pca_trajectory_17.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f4524731f82fa10c92d5a", + "creationDate": "2025-06-03T18:55:32.000Z", + "identifier": "A0018" +} \ No newline at end of file diff --git a/data/files/A0018/records.jsonl b/data/files/A0018/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..2f7312b904e7e5783351f6bce143ade0d2af5524 --- /dev/null +++ b/data/files/A0018/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A0018", "accession": "A0018", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1KAC", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1KAC"], "FORCED_REFERENCES": null, "REFERENCES": ["P36711", "P78310"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKPSGA", "TPYDPLTLWTTPDPPPNCSLIQELDAKLTLCLTKNGSIVNGIVSLVGVKGNLLNIQSTTTTVGVHLVFDEQGRLITSTPTALVPQASWGYRQGQSVSTNTVTNGLGFMPNVSAYPRPNASEAKSQMVSLTYLQGDTSKPITMKVAFNGITSLNGYSLTFMWSGLSNYINQPFSTPSCSFSYITQE"], "NUCLSEQ": [], "DOMAINS": ["Fiber protein", "Coxsackievirus and adenovirus receptor", "Ig-like C2-type 1", "Ig-like C2-type 2"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4718, "SYSTRES": 309, "PROTATS": 4718, "PROTRES": 309, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.93136, "BOXSIZEY": 9.93136, "BOXSIZEZ": 7.03317, "mdName": "replica 1", "mdAtoms": 4718, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0018/files/topology.tpr", "length": 1611356, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0018/files/screenshot.jpg", "length": 22258, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0018/files/trajectory.bin", "length": 283136616, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 5001, "atoms": 4718}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_01.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_02.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_03.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_04.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_05.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_06.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_07.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_08.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_09.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_10.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_11.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_12.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_13.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_14.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_15.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_16.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_17.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0018/files/structure.pdb", "length": 382193, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0018/files/trajectory.xtc", "length": 89856976, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_00.jpg", "length": 23057, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_01.jpg", "length": 23413, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_02.jpg", "length": 22728, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_03.jpg", "length": 22492, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_04.jpg", "length": 22646, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_05.jpg", "length": 22916, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_06.jpg", "length": 22770, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_07.jpg", "length": 22838, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_08.jpg", "length": 22815, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_09.jpg", "length": 22940, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_10.jpg", "length": 22771, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_11.jpg", "length": 22370, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_12.jpg", "length": 22872, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_13.jpg", "length": 22390, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_14.jpg", "length": 23159, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_15.jpg", "length": 22854, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_16.jpg", "length": 22774, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_17.jpg", "length": 23289, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_18.jpg", "length": 23079, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_19.jpg", "length": 22783, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_00.jpg", "length": 23201, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_01.jpg", "length": 23150, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_02.jpg", "length": 23083, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_03.jpg", "length": 22738, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_04.jpg", "length": 22938, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_05.jpg", "length": 23281, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_06.jpg", "length": 23341, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_07.jpg", "length": 22948, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_08.jpg", "length": 23057, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_09.jpg", "length": 23091, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_10.jpg", "length": 23318, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_11.jpg", "length": 23074, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_12.jpg", "length": 23309, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_13.jpg", "length": 22958, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_14.jpg", "length": 22786, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_15.jpg", "length": 23032, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_16.jpg", "length": 22970, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_17.jpg", "length": 23203, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_18.jpg", "length": 23625, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_19.jpg", "length": 23700, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0018/files/pocket_01.pdb", "length": 12931, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0018/files/pocket_02.pdb", "length": 11591, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0018/files/pocket_03.pdb", "length": 9648, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0018/files/pocket_04.pdb", "length": 9581, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0018/files/pocket_05.pdb", "length": 9380, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0018/files/pocket_06.pdb", "length": 4958, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0018/files/pocket_07.pdb", "length": 4958, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0018/files/pocket_08.pdb", "length": 4422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0018/files/pocket_09.pdb", "length": 3685, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}]} +{"project_identifier": "A0018", "accession": "A0018", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1KAC", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1KAC"], "FORCED_REFERENCES": null, "REFERENCES": ["P36711", "P78310"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKPSGA", "TPYDPLTLWTTPDPPPNCSLIQELDAKLTLCLTKNGSIVNGIVSLVGVKGNLLNIQSTTTTVGVHLVFDEQGRLITSTPTALVPQASWGYRQGQSVSTNTVTNGLGFMPNVSAYPRPNASEAKSQMVSLTYLQGDTSKPITMKVAFNGITSLNGYSLTFMWSGLSNYINQPFSTPSCSFSYITQE"], "NUCLSEQ": [], "DOMAINS": ["Fiber protein", "Coxsackievirus and adenovirus receptor", "Ig-like C2-type 1", "Ig-like C2-type 2"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4718, "SYSTRES": 309, "PROTATS": 4718, "PROTRES": 309, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.93136, "BOXSIZEY": 9.93136, "BOXSIZEZ": 7.03317, "mdName": "replica 1", "mdAtoms": 4718, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0018/files/topology.tpr", "length": 1611356, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0018/files/screenshot.jpg", "length": 22258, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0018/files/trajectory.bin", "length": 283136616, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 5001, "atoms": 4718}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_01.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_02.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_03.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_04.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_05.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_06.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_07.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_08.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_09.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_10.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_11.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_12.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_13.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_14.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_15.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_16.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_17.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0018/files/structure.pdb", "length": 382193, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0018/files/trajectory.xtc", "length": 89856976, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_00.jpg", "length": 23057, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_01.jpg", "length": 23413, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_02.jpg", "length": 22728, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_03.jpg", "length": 22492, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_04.jpg", "length": 22646, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_05.jpg", "length": 22916, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_06.jpg", "length": 22770, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_07.jpg", "length": 22838, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_08.jpg", "length": 22815, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_09.jpg", "length": 22940, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_10.jpg", "length": 22771, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_11.jpg", "length": 22370, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_12.jpg", "length": 22872, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_13.jpg", "length": 22390, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_14.jpg", "length": 23159, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_15.jpg", "length": 22854, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_16.jpg", "length": 22774, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_17.jpg", "length": 23289, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_18.jpg", "length": 23079, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_19.jpg", "length": 22783, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_00.jpg", "length": 23201, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_01.jpg", "length": 23150, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_02.jpg", "length": 23083, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_03.jpg", "length": 22738, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_04.jpg", "length": 22938, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_05.jpg", "length": 23281, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_06.jpg", "length": 23341, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_07.jpg", "length": 22948, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_08.jpg", "length": 23057, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_09.jpg", "length": 23091, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_10.jpg", "length": 23318, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_11.jpg", "length": 23074, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_12.jpg", "length": 23309, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_13.jpg", "length": 22958, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_14.jpg", "length": 22786, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_15.jpg", "length": 23032, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_16.jpg", "length": 22970, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_17.jpg", "length": 23203, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_18.jpg", "length": 23625, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_19.jpg", "length": 23700, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0018/files/pocket_01.pdb", "length": 12931, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0018/files/pocket_02.pdb", "length": 11591, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0018/files/pocket_03.pdb", "length": 9648, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0018/files/pocket_04.pdb", "length": 9581, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0018/files/pocket_05.pdb", "length": 9380, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0018/files/pocket_06.pdb", "length": 4958, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0018/files/pocket_07.pdb", "length": 4958, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0018/files/pocket_08.pdb", "length": 4422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0018/files/pocket_09.pdb", "length": 3685, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}]} +{"project_identifier": "A0018", "accession": "A0018", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1KAC", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1KAC"], "FORCED_REFERENCES": null, "REFERENCES": ["P36711", "P78310"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKPSGA", "TPYDPLTLWTTPDPPPNCSLIQELDAKLTLCLTKNGSIVNGIVSLVGVKGNLLNIQSTTTTVGVHLVFDEQGRLITSTPTALVPQASWGYRQGQSVSTNTVTNGLGFMPNVSAYPRPNASEAKSQMVSLTYLQGDTSKPITMKVAFNGITSLNGYSLTFMWSGLSNYINQPFSTPSCSFSYITQE"], "NUCLSEQ": [], "DOMAINS": ["Fiber protein", "Coxsackievirus and adenovirus receptor", "Ig-like C2-type 1", "Ig-like C2-type 2"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4718, "SYSTRES": 309, "PROTATS": 4718, "PROTRES": 309, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.93136, "BOXSIZEY": 9.93136, "BOXSIZEZ": 7.03317, "mdName": "replica 1", "mdAtoms": 4718, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0018/files/topology.tpr", "length": 1611356, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0018/files/screenshot.jpg", "length": 22258, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0018/files/trajectory.bin", "length": 283136616, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 5001, "atoms": 4718}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_01.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_02.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_03.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_04.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_05.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_06.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_07.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_08.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_09.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_10.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_11.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_12.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_13.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_14.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_15.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_16.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A0018/files/pca_trajectory_17.bin", "length": 222480, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0, "frames": 20, "atoms": 927}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0018/files/structure.pdb", "length": 382193, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0018/files/trajectory.xtc", "length": 89856976, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_00.jpg", "length": 23057, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_01.jpg", "length": 23413, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_02.jpg", "length": 22728, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_03.jpg", "length": 22492, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_04.jpg", "length": 22646, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_05.jpg", "length": 22916, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_06.jpg", "length": 22770, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_07.jpg", "length": 22838, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_08.jpg", "length": 22815, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_09.jpg", "length": 22940, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_10.jpg", "length": 22771, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_11.jpg", "length": 22370, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_12.jpg", "length": 22872, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_13.jpg", "length": 22390, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_14.jpg", "length": 23159, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_15.jpg", "length": 22854, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_16.jpg", "length": 22774, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_17.jpg", "length": 23289, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_18.jpg", "length": 23079, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0018/files/clusters_00_screenshot_19.jpg", "length": 22783, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_00.jpg", "length": 23201, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_01.jpg", "length": 23150, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_02.jpg", "length": 23083, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_03.jpg", "length": 22738, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_04.jpg", "length": 22938, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_05.jpg", "length": 23281, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_06.jpg", "length": 23341, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_07.jpg", "length": 22948, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_08.jpg", "length": 23057, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_09.jpg", "length": 23091, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_10.jpg", "length": 23318, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_11.jpg", "length": 23074, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_12.jpg", "length": 23309, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_13.jpg", "length": 22958, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_14.jpg", "length": 22786, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_15.jpg", "length": 23032, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_16.jpg", "length": 22970, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_17.jpg", "length": 23203, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_18.jpg", "length": 23625, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0018/files/clusters_01_screenshot_19.jpg", "length": 23700, "contentType": "application/octet-stream", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0018/files/pocket_01.pdb", "length": 12931, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0018/files/pocket_02.pdb", "length": 11591, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0018/files/pocket_03.pdb", "length": 9648, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0018/files/pocket_04.pdb", "length": 9581, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0018/files/pocket_05.pdb", "length": 9380, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0018/files/pocket_06.pdb", "length": 4958, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0018/files/pocket_07.pdb", "length": 4958, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A0018/files/pocket_08.pdb", "length": 4422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A0018/files/pocket_09.pdb", "length": 3685, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4524731f82fa10c92d5a", "md": 0}}]} diff --git a/data/files/A0019/project.json b/data/files/A0019/project.json new file mode 100644 index 0000000000000000000000000000000000000000..5fca08d9117f920c758107317a4893347b8e2f37 --- /dev/null +++ b/data/files/A0019/project.json @@ -0,0 +1,310 @@ +{ + "accession": "A0019", + "published": true, + "metadata": { + "NAME": "Dynarepo 1KGY", + "DESCRIPTION": "Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Author Omid Mokhtari", + "Author Hamed Khakzad", + "Author Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": [ + { + "name": "Link_name", + "url": "www.link-name.org" + } + ], + "PDBIDS": [ + "1KGY" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P54763", + "P52800" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "IVLEPIYWNSSNSKFLPGGGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG", + "AEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Ephrin type-B receptor 2", + "Eph LBD", + "Ephrin-B2", + "Ephrin RBD" + ], + "FRAMESTEP": 0.02, + "TIMESTEP": 5000, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 10116, + "SYSTRES": 638, + "PROTATS": 10116, + "PROTRES": 638, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "chain A-chain C interaction", + "agent_1": "chain A", + "agent_2": "chain C", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain A-chain D interaction", + "agent_1": "chain A", + "agent_2": "chain D", + "selection_1": "chain A", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "chain B-chain C interaction", + "agent_1": "chain B", + "agent_2": "chain C", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain B-chain D interaction", + "agent_1": "chain B", + "agent_2": "chain D", + "selection_1": "chain B", + "selection_2": "chain D", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 11.6619, + "BOXSIZEY": 11.6619, + "BOXSIZEZ": 8.28273, + "mdName": "replica 1", + "mdAtoms": 10116, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_02_screenshot_18.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "clusters_04_screenshot_00.jpg", + "clusters_04_screenshot_01.jpg", + "clusters_04_screenshot_02.jpg", + "clusters_04_screenshot_03.jpg", + "clusters_04_screenshot_04.jpg", + "clusters_04_screenshot_05.jpg", + "clusters_04_screenshot_06.jpg", + "clusters_04_screenshot_07.jpg", + "clusters_04_screenshot_08.jpg", + "clusters_04_screenshot_09.jpg", + "clusters_04_screenshot_10.jpg", + "clusters_04_screenshot_11.jpg", + "clusters_04_screenshot_12.jpg", + "clusters_04_screenshot_13.jpg", + "clusters_04_screenshot_14.jpg", + "clusters_04_screenshot_15.jpg", + "clusters_04_screenshot_16.jpg", + "clusters_04_screenshot_17.jpg", + "clusters_04_screenshot_18.jpg", + "clusters_04_screenshot_19.jpg", + "clusters_04_screenshot_20.jpg", + "clusters_04_screenshot_21.jpg", + "clusters_05_screenshot_00.jpg", + "clusters_05_screenshot_01.jpg", + "clusters_05_screenshot_02.jpg", + "clusters_05_screenshot_03.jpg", + "clusters_05_screenshot_04.jpg", + "clusters_05_screenshot_05.jpg", + "clusters_05_screenshot_06.jpg", + "clusters_05_screenshot_07.jpg", + "clusters_05_screenshot_08.jpg", + "clusters_05_screenshot_09.jpg", + "clusters_05_screenshot_10.jpg", + "clusters_05_screenshot_11.jpg", + "clusters_05_screenshot_12.jpg", + "clusters_05_screenshot_13.jpg", + "clusters_05_screenshot_14.jpg", + "clusters_05_screenshot_15.jpg", + "clusters_05_screenshot_16.jpg", + "clusters_05_screenshot_17.jpg", + "clusters_05_screenshot_18.jpg", + "clusters_05_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "clusters-04", + "clusters-05", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f46fb338132a501ddf04a", + "creationDate": "2025-06-03T19:03:23.000Z", + "identifier": "A0019" +} \ No newline at end of file diff --git a/data/files/A0019/records.jsonl b/data/files/A0019/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..182aec9b93561d42049108e5a8672b1f49982822 --- /dev/null +++ b/data/files/A0019/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A0019", "accession": "A0019", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1KGY", "DESCRIPTION": "Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Author Omid Mokhtari", "Author Hamed Khakzad", "Author Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": [{"name": "Link_name", "url": "www.link-name.org"}], "PDBIDS": ["1KGY"], "FORCED_REFERENCES": null, "REFERENCES": ["P54763", "P52800"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["IVLEPIYWNSSNSKFLPGGGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG", "AEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR"], "NUCLSEQ": [], "DOMAINS": ["Ephrin type-B receptor 2", "Eph LBD", "Ephrin-B2", "Ephrin RBD"], "FRAMESTEP": 0.02, "TIMESTEP": 5000, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 10116, "SYSTRES": 638, "PROTATS": 10116, "PROTRES": 638, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.6619, "BOXSIZEY": 11.6619, "BOXSIZEZ": 8.28273, "mdName": "replica 1", "mdAtoms": 10116, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0019/files/topology.tpr", "length": 3079460, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0019/files/screenshot.jpg", "length": 29695, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0019/files/trajectory.bin", "length": 607081392, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 5001, "atoms": 10116}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_01.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_02.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_03.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_04.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_05.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_06.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0019/files/structure.pdb", "length": 819431, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0019/files/trajectory.xtc", "length": 192365672, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_00.jpg", "length": 27907, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_01.jpg", "length": 26763, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_02.jpg", "length": 27904, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_03.jpg", "length": 28584, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_04.jpg", "length": 28363, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_05.jpg", "length": 28003, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_06.jpg", "length": 28057, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_07.jpg", "length": 28181, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_08.jpg", "length": 28210, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_09.jpg", "length": 28361, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_10.jpg", "length": 28121, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_11.jpg", "length": 27279, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_12.jpg", "length": 27175, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_13.jpg", "length": 28398, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_14.jpg", "length": 27333, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_15.jpg", "length": 27837, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_16.jpg", "length": 27451, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_17.jpg", "length": 28170, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_18.jpg", "length": 27535, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_19.jpg", "length": 27389, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_20.jpg", "length": 27560, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_00.jpg", "length": 27462, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_01.jpg", "length": 27540, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_02.jpg", "length": 28208, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_03.jpg", "length": 28865, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_04.jpg", "length": 28316, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_05.jpg", "length": 28122, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_06.jpg", "length": 28075, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_07.jpg", "length": 28161, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_08.jpg", "length": 28406, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_09.jpg", "length": 28376, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_10.jpg", "length": 28046, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_11.jpg", "length": 26992, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_12.jpg", "length": 27737, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_13.jpg", "length": 28640, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_14.jpg", "length": 27574, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_15.jpg", "length": 28518, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_16.jpg", "length": 27992, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_17.jpg", "length": 28393, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_18.jpg", "length": 27337, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_19.jpg", "length": 27965, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_00.jpg", "length": 29023, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_01.jpg", "length": 29739, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_02.jpg", "length": 29577, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_03.jpg", "length": 29803, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_04.jpg", "length": 30172, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_05.jpg", "length": 29743, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_06.jpg", "length": 29565, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_07.jpg", "length": 28773, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_08.jpg", "length": 28721, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_09.jpg", "length": 29324, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_10.jpg", "length": 28931, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_11.jpg", "length": 28999, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_12.jpg", "length": 28366, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_13.jpg", "length": 28962, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_14.jpg", "length": 28820, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_15.jpg", "length": 29191, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_16.jpg", "length": 28629, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_17.jpg", "length": 28537, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_18.jpg", "length": 28960, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_00.jpg", "length": 29032, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_01.jpg", "length": 28703, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_02.jpg", "length": 29538, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_03.jpg", "length": 28955, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_04.jpg", "length": 27958, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_05.jpg", "length": 28346, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_06.jpg", "length": 28836, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_07.jpg", "length": 29312, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_08.jpg", "length": 29371, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_09.jpg", "length": 28788, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_10.jpg", "length": 29955, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_11.jpg", "length": 28921, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_12.jpg", "length": 29151, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_13.jpg", "length": 28698, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_14.jpg", "length": 29078, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_15.jpg", "length": 28560, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_16.jpg", "length": 28710, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_17.jpg", "length": 28869, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_18.jpg", "length": 29428, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_19.jpg", "length": 28622, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_00.jpg", "length": 26444, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_01.jpg", "length": 26027, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_02.jpg", "length": 26411, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_03.jpg", "length": 25794, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_04.jpg", "length": 25571, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_05.jpg", "length": 25648, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_06.jpg", "length": 26425, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_07.jpg", "length": 25915, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_08.jpg", "length": 25413, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_09.jpg", "length": 26209, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_10.jpg", "length": 25712, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_11.jpg", "length": 26130, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_12.jpg", "length": 24979, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_13.jpg", "length": 25583, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_14.jpg", "length": 25807, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_15.jpg", "length": 25272, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_16.jpg", "length": 25685, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_17.jpg", "length": 25454, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_18.jpg", "length": 25202, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_19.jpg", "length": 26508, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_20.jpg", "length": 25282, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_21.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_21.jpg", "length": 25107, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_00.jpg", "length": 27166, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_01.jpg", "length": 27020, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_02.jpg", "length": 27376, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_03.jpg", "length": 26771, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_04.jpg", "length": 27400, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_05.jpg", "length": 27090, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_06.jpg", "length": 26868, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_07.jpg", "length": 26549, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_08.jpg", "length": 27164, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_09.jpg", "length": 26530, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_10.jpg", "length": 26762, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_11.jpg", "length": 26839, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_12.jpg", "length": 26505, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_13.jpg", "length": 26225, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_14.jpg", "length": 26199, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_15.jpg", "length": 26578, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_16.jpg", "length": 26753, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_17.jpg", "length": 26900, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_18.jpg", "length": 26431, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_19.jpg", "length": 26191, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0019/files/pocket_01.pdb", "length": 15544, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0019/files/pocket_02.pdb", "length": 13132, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0019/files/pocket_03.pdb", "length": 7102, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0019/files/pocket_04.pdb", "length": 6566, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0019/files/pocket_05.pdb", "length": 6231, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0019/files/pocket_06.pdb", "length": 3417, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0019/files/pocket_07.pdb", "length": 3082, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}]} +{"project_identifier": "A0019", "accession": "A0019", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1KGY", "DESCRIPTION": "Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Author Omid Mokhtari", "Author Hamed Khakzad", "Author Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": [{"name": "Link_name", "url": "www.link-name.org"}], "PDBIDS": ["1KGY"], "FORCED_REFERENCES": null, "REFERENCES": ["P54763", "P52800"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["IVLEPIYWNSSNSKFLPGGGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG", "AEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR"], "NUCLSEQ": [], "DOMAINS": ["Ephrin type-B receptor 2", "Eph LBD", "Ephrin-B2", "Ephrin RBD"], "FRAMESTEP": 0.02, "TIMESTEP": 5000, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 10116, "SYSTRES": 638, "PROTATS": 10116, "PROTRES": 638, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.6619, "BOXSIZEY": 11.6619, "BOXSIZEZ": 8.28273, "mdName": "replica 1", "mdAtoms": 10116, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0019/files/topology.tpr", "length": 3079460, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0019/files/screenshot.jpg", "length": 29695, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0019/files/trajectory.bin", "length": 607081392, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 5001, "atoms": 10116}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_01.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_02.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_03.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_04.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_05.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_06.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0019/files/structure.pdb", "length": 819431, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0019/files/trajectory.xtc", "length": 192365672, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_00.jpg", "length": 27907, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_01.jpg", "length": 26763, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_02.jpg", "length": 27904, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_03.jpg", "length": 28584, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_04.jpg", "length": 28363, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_05.jpg", "length": 28003, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_06.jpg", "length": 28057, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_07.jpg", "length": 28181, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_08.jpg", "length": 28210, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_09.jpg", "length": 28361, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_10.jpg", "length": 28121, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_11.jpg", "length": 27279, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_12.jpg", "length": 27175, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_13.jpg", "length": 28398, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_14.jpg", "length": 27333, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_15.jpg", "length": 27837, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_16.jpg", "length": 27451, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_17.jpg", "length": 28170, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_18.jpg", "length": 27535, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_19.jpg", "length": 27389, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_20.jpg", "length": 27560, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_00.jpg", "length": 27462, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_01.jpg", "length": 27540, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_02.jpg", "length": 28208, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_03.jpg", "length": 28865, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_04.jpg", "length": 28316, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_05.jpg", "length": 28122, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_06.jpg", "length": 28075, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_07.jpg", "length": 28161, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_08.jpg", "length": 28406, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_09.jpg", "length": 28376, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_10.jpg", "length": 28046, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_11.jpg", "length": 26992, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_12.jpg", "length": 27737, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_13.jpg", "length": 28640, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_14.jpg", "length": 27574, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_15.jpg", "length": 28518, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_16.jpg", "length": 27992, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_17.jpg", "length": 28393, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_18.jpg", "length": 27337, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_19.jpg", "length": 27965, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_00.jpg", "length": 29023, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_01.jpg", "length": 29739, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_02.jpg", "length": 29577, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_03.jpg", "length": 29803, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_04.jpg", "length": 30172, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_05.jpg", "length": 29743, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_06.jpg", "length": 29565, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_07.jpg", "length": 28773, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_08.jpg", "length": 28721, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_09.jpg", "length": 29324, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_10.jpg", "length": 28931, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_11.jpg", "length": 28999, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_12.jpg", "length": 28366, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_13.jpg", "length": 28962, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_14.jpg", "length": 28820, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_15.jpg", "length": 29191, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_16.jpg", "length": 28629, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_17.jpg", "length": 28537, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_18.jpg", "length": 28960, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_00.jpg", "length": 29032, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_01.jpg", "length": 28703, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_02.jpg", "length": 29538, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_03.jpg", "length": 28955, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_04.jpg", "length": 27958, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_05.jpg", "length": 28346, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_06.jpg", "length": 28836, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_07.jpg", "length": 29312, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_08.jpg", "length": 29371, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_09.jpg", "length": 28788, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_10.jpg", "length": 29955, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_11.jpg", "length": 28921, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_12.jpg", "length": 29151, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_13.jpg", "length": 28698, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_14.jpg", "length": 29078, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_15.jpg", "length": 28560, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_16.jpg", "length": 28710, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_17.jpg", "length": 28869, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_18.jpg", "length": 29428, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_19.jpg", "length": 28622, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_00.jpg", "length": 26444, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_01.jpg", "length": 26027, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_02.jpg", "length": 26411, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_03.jpg", "length": 25794, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_04.jpg", "length": 25571, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_05.jpg", "length": 25648, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_06.jpg", "length": 26425, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_07.jpg", "length": 25915, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_08.jpg", "length": 25413, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_09.jpg", "length": 26209, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_10.jpg", "length": 25712, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_11.jpg", "length": 26130, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_12.jpg", "length": 24979, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_13.jpg", "length": 25583, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_14.jpg", "length": 25807, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_15.jpg", "length": 25272, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_16.jpg", "length": 25685, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_17.jpg", "length": 25454, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_18.jpg", "length": 25202, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_19.jpg", "length": 26508, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_20.jpg", "length": 25282, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_21.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_21.jpg", "length": 25107, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_00.jpg", "length": 27166, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_01.jpg", "length": 27020, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_02.jpg", "length": 27376, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_03.jpg", "length": 26771, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_04.jpg", "length": 27400, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_05.jpg", "length": 27090, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_06.jpg", "length": 26868, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_07.jpg", "length": 26549, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_08.jpg", "length": 27164, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_09.jpg", "length": 26530, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_10.jpg", "length": 26762, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_11.jpg", "length": 26839, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_12.jpg", "length": 26505, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_13.jpg", "length": 26225, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_14.jpg", "length": 26199, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_15.jpg", "length": 26578, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_16.jpg", "length": 26753, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_17.jpg", "length": 26900, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_18.jpg", "length": 26431, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_19.jpg", "length": 26191, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0019/files/pocket_01.pdb", "length": 15544, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0019/files/pocket_02.pdb", "length": 13132, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0019/files/pocket_03.pdb", "length": 7102, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0019/files/pocket_04.pdb", "length": 6566, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0019/files/pocket_05.pdb", "length": 6231, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0019/files/pocket_06.pdb", "length": 3417, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0019/files/pocket_07.pdb", "length": 3082, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}]} +{"project_identifier": "A0019", "accession": "A0019", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1KGY", "DESCRIPTION": "Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Author Omid Mokhtari", "Author Hamed Khakzad", "Author Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": [{"name": "Link_name", "url": "www.link-name.org"}], "PDBIDS": ["1KGY"], "FORCED_REFERENCES": null, "REFERENCES": ["P54763", "P52800"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["IVLEPIYWNSSNSKFLPGGGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG", "AEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR"], "NUCLSEQ": [], "DOMAINS": ["Ephrin type-B receptor 2", "Eph LBD", "Ephrin-B2", "Ephrin RBD"], "FRAMESTEP": 0.02, "TIMESTEP": 5000, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 10116, "SYSTRES": 638, "PROTATS": 10116, "PROTRES": 638, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.6619, "BOXSIZEY": 11.6619, "BOXSIZEZ": 8.28273, "mdName": "replica 1", "mdAtoms": 10116, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0019/files/topology.tpr", "length": 3079460, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0019/files/screenshot.jpg", "length": 29695, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0019/files/trajectory.bin", "length": 607081392, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 5001, "atoms": 10116}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_01.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_02.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_03.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_04.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_05.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0019/files/pca_trajectory_06.bin", "length": 459360, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0, "frames": 20, "atoms": 1914}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0019/files/structure.pdb", "length": 819431, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0019/files/trajectory.xtc", "length": 192365672, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_00.jpg", "length": 27907, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_01.jpg", "length": 26763, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_02.jpg", "length": 27904, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_03.jpg", "length": 28584, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_04.jpg", "length": 28363, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_05.jpg", "length": 28003, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_06.jpg", "length": 28057, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_07.jpg", "length": 28181, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_08.jpg", "length": 28210, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_09.jpg", "length": 28361, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_10.jpg", "length": 28121, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_11.jpg", "length": 27279, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_12.jpg", "length": 27175, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_13.jpg", "length": 28398, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_14.jpg", "length": 27333, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_15.jpg", "length": 27837, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_16.jpg", "length": 27451, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_17.jpg", "length": 28170, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_18.jpg", "length": 27535, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_19.jpg", "length": 27389, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A0019/files/clusters_00_screenshot_20.jpg", "length": 27560, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_00.jpg", "length": 27462, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_01.jpg", "length": 27540, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_02.jpg", "length": 28208, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_03.jpg", "length": 28865, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_04.jpg", "length": 28316, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_05.jpg", "length": 28122, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_06.jpg", "length": 28075, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_07.jpg", "length": 28161, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_08.jpg", "length": 28406, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_09.jpg", "length": 28376, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_10.jpg", "length": 28046, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_11.jpg", "length": 26992, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_12.jpg", "length": 27737, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_13.jpg", "length": 28640, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_14.jpg", "length": 27574, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_15.jpg", "length": 28518, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_16.jpg", "length": 27992, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_17.jpg", "length": 28393, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_18.jpg", "length": 27337, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_01_screenshot_19.jpg", "length": 27965, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_00.jpg", "length": 29023, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_01.jpg", "length": 29739, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_02.jpg", "length": 29577, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_03.jpg", "length": 29803, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_04.jpg", "length": 30172, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_05.jpg", "length": 29743, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_06.jpg", "length": 29565, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_07.jpg", "length": 28773, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_08.jpg", "length": 28721, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_09.jpg", "length": 29324, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_10.jpg", "length": 28931, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_11.jpg", "length": 28999, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_12.jpg", "length": 28366, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_13.jpg", "length": 28962, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_14.jpg", "length": 28820, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_15.jpg", "length": 29191, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_16.jpg", "length": 28629, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_17.jpg", "length": 28537, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_02_screenshot_18.jpg", "length": 28960, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_00.jpg", "length": 29032, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_01.jpg", "length": 28703, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_02.jpg", "length": 29538, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_03.jpg", "length": 28955, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_04.jpg", "length": 27958, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_05.jpg", "length": 28346, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_06.jpg", "length": 28836, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_07.jpg", "length": 29312, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_08.jpg", "length": 29371, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_09.jpg", "length": 28788, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_10.jpg", "length": 29955, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_11.jpg", "length": 28921, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_12.jpg", "length": 29151, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_13.jpg", "length": 28698, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_14.jpg", "length": 29078, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_15.jpg", "length": 28560, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_16.jpg", "length": 28710, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_17.jpg", "length": 28869, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_18.jpg", "length": 29428, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_03_screenshot_19.jpg", "length": 28622, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_00.jpg", "length": 26444, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_01.jpg", "length": 26027, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_02.jpg", "length": 26411, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_03.jpg", "length": 25794, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_04.jpg", "length": 25571, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_05.jpg", "length": 25648, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_06.jpg", "length": 26425, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_07.jpg", "length": 25915, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_08.jpg", "length": 25413, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_09.jpg", "length": 26209, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_10.jpg", "length": 25712, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_11.jpg", "length": 26130, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_12.jpg", "length": 24979, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_13.jpg", "length": 25583, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_14.jpg", "length": 25807, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_15.jpg", "length": 25272, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_16.jpg", "length": 25685, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_17.jpg", "length": 25454, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_18.jpg", "length": 25202, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_19.jpg", "length": 26508, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_20.jpg", "length": 25282, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_04_screenshot_21.jpg", "downloadUrl": "/projects/A0019/files/clusters_04_screenshot_21.jpg", "length": 25107, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_00.jpg", "length": 27166, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_01.jpg", "length": 27020, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_02.jpg", "length": 27376, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_03.jpg", "length": 26771, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_04.jpg", "length": 27400, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_05.jpg", "length": 27090, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_06.jpg", "length": 26868, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_07.jpg", "length": 26549, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_08.jpg", "length": 27164, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_09.jpg", "length": 26530, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_10.jpg", "length": 26762, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_11.jpg", "length": 26839, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_12.jpg", "length": 26505, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_13.jpg", "length": 26225, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_14.jpg", "length": 26199, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_15.jpg", "length": 26578, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_16.jpg", "length": 26753, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_17.jpg", "length": 26900, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_18.jpg", "length": 26431, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A0019/files/clusters_05_screenshot_19.jpg", "length": 26191, "contentType": "application/octet-stream", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0019/files/pocket_01.pdb", "length": 15544, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0019/files/pocket_02.pdb", "length": 13132, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0019/files/pocket_03.pdb", "length": 7102, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A0019/files/pocket_04.pdb", "length": 6566, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A0019/files/pocket_05.pdb", "length": 6231, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A0019/files/pocket_06.pdb", "length": 3417, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A0019/files/pocket_07.pdb", "length": 3082, "contentType": "chemical/x-pdb", "metadata": {"project": "683f46fb338132a501ddf04a", "md": 0}}]} diff --git a/data/files/A001A/project.json b/data/files/A001A/project.json new file mode 100644 index 0000000000000000000000000000000000000000..bf0eb3c5ce6ffdde83f5a08f9c693b66dd9282bc --- /dev/null +++ b/data/files/A001A/project.json @@ -0,0 +1,203 @@ +{ + "accession": "A001A", + "published": true, + "metadata": { + "NAME": "Dynarepo 1KXT", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1KXT" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P00690", + "A0A0B4J1X5" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "QYAPQTQSGRTSIVHLFEWRWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGEAIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSSYRWARNFVNGEDVNDWIGPPNNNGVIKEVTINADTTCGNDWVCEHRWREIRNMVWFRNVVDGQPFANWWDNGSNQVAFGRGNRGFIVFNNDDWQLSSTLQTGLPGGTYCDVISGDKVGNSCTGIKVYVSSDGTAQFSISNSAEDPFIAIHAESKL", + "QVQLVASGGGSVQAGGSLRLSCAASTFSSYPMGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRDNAANTAYLQMDSLKPEDTAVYYCAAGPGSGKLVVAGRTCYGPNYWGQGTQVTV" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Pancreatic alpha-amylase", + "Transition state stabilizer", + "Immunoglobulin heavy variable 3-74", + "Ig-like", + "Framework-1", + "Complementarity-determining-1", + "Framework-2", + "Complementarity-determining-2", + "Framework-3", + "Complementarity-determining-3" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 9367, + "SYSTRES": 619, + "PROTATS": 9367, + "PROTRES": 619, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 10.8077, + "BOXSIZEY": 10.8077, + "BOXSIZEZ": 7.62841, + "mdName": "replica 1", + "mdAtoms": 9367, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f497a56ee2669fcc42f36", + "creationDate": "2025-06-03T19:14:02.000Z", + "identifier": "A001A" +} \ No newline at end of file diff --git a/data/files/A001A/records.jsonl b/data/files/A001A/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..d1bb1aed520d832e607da848ad685516c7079adf --- /dev/null +++ b/data/files/A001A/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001A", "accession": "A001A", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1KXT", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1KXT"], "FORCED_REFERENCES": null, "REFERENCES": ["P00690", "A0A0B4J1X5"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["QYAPQTQSGRTSIVHLFEWRWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGEAIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSSYRWARNFVNGEDVNDWIGPPNNNGVIKEVTINADTTCGNDWVCEHRWREIRNMVWFRNVVDGQPFANWWDNGSNQVAFGRGNRGFIVFNNDDWQLSSTLQTGLPGGTYCDVISGDKVGNSCTGIKVYVSSDGTAQFSISNSAEDPFIAIHAESKL", "QVQLVASGGGSVQAGGSLRLSCAASTFSSYPMGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRDNAANTAYLQMDSLKPEDTAVYYCAAGPGSGKLVVAGRTCYGPNYWGQGTQVTV"], "NUCLSEQ": [], "DOMAINS": ["Pancreatic alpha-amylase", "Transition state stabilizer", "Immunoglobulin heavy variable 3-74", "Ig-like", "Framework-1", "Complementarity-determining-1", "Framework-2", "Complementarity-determining-2", "Framework-3", "Complementarity-determining-3"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 9367, "SYSTRES": 619, "PROTATS": 9367, "PROTRES": 619, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.8077, "BOXSIZEY": 10.8077, "BOXSIZEZ": 7.62841, "mdName": "replica 1", "mdAtoms": 9367, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001A/files/topology.tpr", "length": 2809436, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001A/files/screenshot.jpg", "length": 29032, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001A/files/trajectory.bin", "length": 562132404, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 5001, "atoms": 9367}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_01.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_02.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_03.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_04.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_05.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_06.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_07.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_08.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_09.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_10.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_11.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_12.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_13.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001A/files/structure.pdb", "length": 758762, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001A/files/trajectory.xtc", "length": 177667676, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_00.jpg", "length": 29774, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_01.jpg", "length": 30013, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_02.jpg", "length": 29982, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_03.jpg", "length": 30161, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_04.jpg", "length": 30417, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_05.jpg", "length": 30333, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_06.jpg", "length": 30696, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_07.jpg", "length": 30661, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_08.jpg", "length": 30403, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_09.jpg", "length": 30247, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_10.jpg", "length": 30272, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_11.jpg", "length": 30292, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_12.jpg", "length": 30501, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_13.jpg", "length": 30299, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_14.jpg", "length": 29991, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_15.jpg", "length": 30676, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_16.jpg", "length": 30017, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_17.jpg", "length": 29715, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_18.jpg", "length": 29982, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_19.jpg", "length": 30065, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_00.jpg", "length": 29339, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_01.jpg", "length": 29326, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_02.jpg", "length": 29221, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_03.jpg", "length": 29242, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_04.jpg", "length": 29533, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_05.jpg", "length": 29487, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_06.jpg", "length": 29942, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_07.jpg", "length": 29996, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_08.jpg", "length": 30074, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_09.jpg", "length": 29740, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_10.jpg", "length": 29473, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_11.jpg", "length": 29869, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_12.jpg", "length": 30066, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_13.jpg", "length": 29893, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_14.jpg", "length": 29904, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_15.jpg", "length": 30098, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_16.jpg", "length": 29275, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_17.jpg", "length": 29435, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_18.jpg", "length": 29374, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_19.jpg", "length": 29627, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001A/files/pocket_01.pdb", "length": 42344, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001A/files/pocket_02.pdb", "length": 18425, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001A/files/pocket_03.pdb", "length": 16549, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001A/files/pocket_04.pdb", "length": 14673, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001A/files/pocket_05.pdb", "length": 13132, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001A/files/pocket_06.pdb", "length": 11658, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001A/files/pocket_07.pdb", "length": 7839, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001A/files/pocket_08.pdb", "length": 7571, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001A/files/pocket_09.pdb", "length": 5427, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001A/files/pocket_10.pdb", "length": 4824, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}]} +{"project_identifier": "A001A", "accession": "A001A", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1KXT", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1KXT"], "FORCED_REFERENCES": null, "REFERENCES": ["P00690", "A0A0B4J1X5"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["QYAPQTQSGRTSIVHLFEWRWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGEAIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSSYRWARNFVNGEDVNDWIGPPNNNGVIKEVTINADTTCGNDWVCEHRWREIRNMVWFRNVVDGQPFANWWDNGSNQVAFGRGNRGFIVFNNDDWQLSSTLQTGLPGGTYCDVISGDKVGNSCTGIKVYVSSDGTAQFSISNSAEDPFIAIHAESKL", "QVQLVASGGGSVQAGGSLRLSCAASTFSSYPMGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRDNAANTAYLQMDSLKPEDTAVYYCAAGPGSGKLVVAGRTCYGPNYWGQGTQVTV"], "NUCLSEQ": [], "DOMAINS": ["Pancreatic alpha-amylase", "Transition state stabilizer", "Immunoglobulin heavy variable 3-74", "Ig-like", "Framework-1", "Complementarity-determining-1", "Framework-2", "Complementarity-determining-2", "Framework-3", "Complementarity-determining-3"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 9367, "SYSTRES": 619, "PROTATS": 9367, "PROTRES": 619, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.8077, "BOXSIZEY": 10.8077, "BOXSIZEZ": 7.62841, "mdName": "replica 1", "mdAtoms": 9367, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001A/files/topology.tpr", "length": 2809436, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001A/files/screenshot.jpg", "length": 29032, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001A/files/trajectory.bin", "length": 562132404, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 5001, "atoms": 9367}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_01.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_02.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_03.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_04.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_05.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_06.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_07.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_08.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_09.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_10.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_11.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_12.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_13.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001A/files/structure.pdb", "length": 758762, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001A/files/trajectory.xtc", "length": 177667676, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_00.jpg", "length": 29774, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_01.jpg", "length": 30013, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_02.jpg", "length": 29982, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_03.jpg", "length": 30161, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_04.jpg", "length": 30417, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_05.jpg", "length": 30333, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_06.jpg", "length": 30696, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_07.jpg", "length": 30661, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_08.jpg", "length": 30403, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_09.jpg", "length": 30247, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_10.jpg", "length": 30272, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_11.jpg", "length": 30292, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_12.jpg", "length": 30501, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_13.jpg", "length": 30299, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_14.jpg", "length": 29991, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_15.jpg", "length": 30676, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_16.jpg", "length": 30017, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_17.jpg", "length": 29715, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_18.jpg", "length": 29982, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_19.jpg", "length": 30065, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_00.jpg", "length": 29339, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_01.jpg", "length": 29326, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_02.jpg", "length": 29221, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_03.jpg", "length": 29242, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_04.jpg", "length": 29533, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_05.jpg", "length": 29487, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_06.jpg", "length": 29942, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_07.jpg", "length": 29996, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_08.jpg", "length": 30074, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_09.jpg", "length": 29740, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_10.jpg", "length": 29473, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_11.jpg", "length": 29869, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_12.jpg", "length": 30066, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_13.jpg", "length": 29893, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_14.jpg", "length": 29904, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_15.jpg", "length": 30098, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_16.jpg", "length": 29275, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_17.jpg", "length": 29435, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_18.jpg", "length": 29374, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_19.jpg", "length": 29627, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001A/files/pocket_01.pdb", "length": 42344, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001A/files/pocket_02.pdb", "length": 18425, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001A/files/pocket_03.pdb", "length": 16549, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001A/files/pocket_04.pdb", "length": 14673, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001A/files/pocket_05.pdb", "length": 13132, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001A/files/pocket_06.pdb", "length": 11658, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001A/files/pocket_07.pdb", "length": 7839, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001A/files/pocket_08.pdb", "length": 7571, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001A/files/pocket_09.pdb", "length": 5427, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001A/files/pocket_10.pdb", "length": 4824, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}]} +{"project_identifier": "A001A", "accession": "A001A", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1KXT", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1KXT"], "FORCED_REFERENCES": null, "REFERENCES": ["P00690", "A0A0B4J1X5"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["QYAPQTQSGRTSIVHLFEWRWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGEAIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSSYRWARNFVNGEDVNDWIGPPNNNGVIKEVTINADTTCGNDWVCEHRWREIRNMVWFRNVVDGQPFANWWDNGSNQVAFGRGNRGFIVFNNDDWQLSSTLQTGLPGGTYCDVISGDKVGNSCTGIKVYVSSDGTAQFSISNSAEDPFIAIHAESKL", "QVQLVASGGGSVQAGGSLRLSCAASTFSSYPMGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRDNAANTAYLQMDSLKPEDTAVYYCAAGPGSGKLVVAGRTCYGPNYWGQGTQVTV"], "NUCLSEQ": [], "DOMAINS": ["Pancreatic alpha-amylase", "Transition state stabilizer", "Immunoglobulin heavy variable 3-74", "Ig-like", "Framework-1", "Complementarity-determining-1", "Framework-2", "Complementarity-determining-2", "Framework-3", "Complementarity-determining-3"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 9367, "SYSTRES": 619, "PROTATS": 9367, "PROTRES": 619, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.8077, "BOXSIZEY": 10.8077, "BOXSIZEZ": 7.62841, "mdName": "replica 1", "mdAtoms": 9367, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001A/files/topology.tpr", "length": 2809436, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001A/files/screenshot.jpg", "length": 29032, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001A/files/trajectory.bin", "length": 562132404, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 5001, "atoms": 9367}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_01.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_02.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_03.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_04.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_05.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_06.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_07.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_08.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_09.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_10.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_11.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_12.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001A/files/pca_trajectory_13.bin", "length": 445680, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0, "frames": 20, "atoms": 1857}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001A/files/structure.pdb", "length": 758762, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001A/files/trajectory.xtc", "length": 177667676, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_00.jpg", "length": 29774, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_01.jpg", "length": 30013, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_02.jpg", "length": 29982, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_03.jpg", "length": 30161, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_04.jpg", "length": 30417, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_05.jpg", "length": 30333, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_06.jpg", "length": 30696, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_07.jpg", "length": 30661, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_08.jpg", "length": 30403, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_09.jpg", "length": 30247, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_10.jpg", "length": 30272, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_11.jpg", "length": 30292, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_12.jpg", "length": 30501, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_13.jpg", "length": 30299, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_14.jpg", "length": 29991, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_15.jpg", "length": 30676, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_16.jpg", "length": 30017, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_17.jpg", "length": 29715, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_18.jpg", "length": 29982, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001A/files/clusters_00_screenshot_19.jpg", "length": 30065, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_00.jpg", "length": 29339, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_01.jpg", "length": 29326, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_02.jpg", "length": 29221, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_03.jpg", "length": 29242, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_04.jpg", "length": 29533, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_05.jpg", "length": 29487, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_06.jpg", "length": 29942, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_07.jpg", "length": 29996, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_08.jpg", "length": 30074, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_09.jpg", "length": 29740, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_10.jpg", "length": 29473, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_11.jpg", "length": 29869, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_12.jpg", "length": 30066, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_13.jpg", "length": 29893, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_14.jpg", "length": 29904, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_15.jpg", "length": 30098, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_16.jpg", "length": 29275, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_17.jpg", "length": 29435, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_18.jpg", "length": 29374, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001A/files/clusters_01_screenshot_19.jpg", "length": 29627, "contentType": "application/octet-stream", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001A/files/pocket_01.pdb", "length": 42344, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001A/files/pocket_02.pdb", "length": 18425, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001A/files/pocket_03.pdb", "length": 16549, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001A/files/pocket_04.pdb", "length": 14673, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001A/files/pocket_05.pdb", "length": 13132, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001A/files/pocket_06.pdb", "length": 11658, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001A/files/pocket_07.pdb", "length": 7839, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001A/files/pocket_08.pdb", "length": 7571, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001A/files/pocket_09.pdb", "length": 5427, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001A/files/pocket_10.pdb", "length": 4824, "contentType": "chemical/x-pdb", "metadata": {"project": "683f497a56ee2669fcc42f36", "md": 0}}]} diff --git a/data/files/A001B/project.json b/data/files/A001B/project.json new file mode 100644 index 0000000000000000000000000000000000000000..1675dceadf15ddceef2088fb2e4a4f01c1ed2ee1 --- /dev/null +++ b/data/files/A001B/project.json @@ -0,0 +1,254 @@ +{ + "accession": "A001B", + "published": true, + "metadata": { + "NAME": "Dynarepo 1L2W", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1L2W" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "A0A0N9NJF3", + "P08008" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "MGYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSS", + "YSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQ", + "SVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMF" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Outer membrane virulence protein YopE", + "Disordered" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 4619, + "SYSTRES": 296, + "PROTATS": 4619, + "PROTRES": 296, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "chain A-chain C interaction", + "agent_1": "chain A", + "agent_2": "chain C", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain B-chain C interaction", + "agent_1": "chain B", + "agent_2": "chain C", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 8.87367, + "BOXSIZEY": 8.87367, + "BOXSIZEZ": 6.31214, + "mdName": "replica 1", + "mdAtoms": 4619, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_02_screenshot_18.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f4b4fdd9423956f1914ee", + "creationDate": "2025-06-03T19:21:51.000Z", + "identifier": "A001B" +} \ No newline at end of file diff --git a/data/files/A001B/records.jsonl b/data/files/A001B/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..9ed37ad3b2a22ba0c322922e534c07fd8c5dd873 --- /dev/null +++ b/data/files/A001B/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001B", "accession": "A001B", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1L2W", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1L2W"], "FORCED_REFERENCES": null, "REFERENCES": ["A0A0N9NJF3", "P08008"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["MGYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSS", "YSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQ", "SVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMF"], "NUCLSEQ": [], "DOMAINS": ["Outer membrane virulence protein YopE", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4619, "SYSTRES": 296, "PROTATS": 4619, "PROTRES": 296, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.87367, "BOXSIZEY": 8.87367, "BOXSIZEZ": 6.31214, "mdName": "replica 1", "mdAtoms": 4619, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001B/files/topology.tpr", "length": 1547536, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001B/files/screenshot.jpg", "length": 19855, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001B/files/trajectory.bin", "length": 277195428, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 5001, "atoms": 4619}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_01.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_02.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_03.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_04.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_05.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_06.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_07.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_08.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_09.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_10.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_11.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_12.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_13.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_14.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_15.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_16.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001B/files/structure.pdb", "length": 374174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001B/files/trajectory.xtc", "length": 88062308, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_00.jpg", "length": 19875, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_01.jpg", "length": 19709, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_02.jpg", "length": 19956, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_03.jpg", "length": 19523, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_04.jpg", "length": 19739, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_05.jpg", "length": 19745, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_06.jpg", "length": 19589, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_07.jpg", "length": 19576, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_08.jpg", "length": 19448, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_09.jpg", "length": 19866, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_10.jpg", "length": 19362, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_11.jpg", "length": 19315, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_12.jpg", "length": 19752, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_13.jpg", "length": 19296, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_14.jpg", "length": 19739, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_15.jpg", "length": 19579, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_16.jpg", "length": 19679, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_17.jpg", "length": 19943, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_18.jpg", "length": 19794, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_00.jpg", "length": 19951, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_01.jpg", "length": 19858, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_02.jpg", "length": 20097, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_03.jpg", "length": 20258, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_04.jpg", "length": 19932, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_05.jpg", "length": 19734, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_06.jpg", "length": 20318, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_07.jpg", "length": 19716, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_08.jpg", "length": 20853, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_09.jpg", "length": 20207, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_10.jpg", "length": 19817, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_11.jpg", "length": 19739, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_12.jpg", "length": 20313, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_13.jpg", "length": 19752, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_14.jpg", "length": 20376, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_15.jpg", "length": 20209, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_16.jpg", "length": 20087, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_17.jpg", "length": 20082, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_18.jpg", "length": 20384, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_00.jpg", "length": 21668, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_01.jpg", "length": 22115, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_02.jpg", "length": 21627, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_03.jpg", "length": 21946, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_04.jpg", "length": 21730, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_05.jpg", "length": 22135, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_06.jpg", "length": 22330, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_07.jpg", "length": 22021, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_08.jpg", "length": 21629, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_09.jpg", "length": 21652, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_10.jpg", "length": 21910, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_11.jpg", "length": 21456, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_12.jpg", "length": 21761, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_13.jpg", "length": 21717, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_14.jpg", "length": 22441, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_15.jpg", "length": 21849, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_16.jpg", "length": 21385, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_17.jpg", "length": 22205, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_18.jpg", "length": 21953, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_00.jpg", "length": 19988, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_01.jpg", "length": 20275, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_02.jpg", "length": 20553, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_03.jpg", "length": 19755, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_04.jpg", "length": 20217, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_05.jpg", "length": 20281, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_06.jpg", "length": 20355, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_07.jpg", "length": 20191, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_08.jpg", "length": 20449, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_09.jpg", "length": 20415, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_10.jpg", "length": 20591, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_11.jpg", "length": 20313, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_12.jpg", "length": 20347, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_13.jpg", "length": 20219, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_14.jpg", "length": 20110, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_15.jpg", "length": 20197, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_16.jpg", "length": 19781, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_17.jpg", "length": 20139, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_18.jpg", "length": 20260, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_19.jpg", "length": 20318, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001B/files/pocket_01.pdb", "length": 30887, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001B/files/pocket_02.pdb", "length": 16281, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001B/files/pocket_03.pdb", "length": 11993, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001B/files/pocket_04.pdb", "length": 10452, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001B/files/pocket_05.pdb", "length": 8978, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001B/files/pocket_06.pdb", "length": 7638, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001B/files/pocket_07.pdb", "length": 7102, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001B/files/pocket_08.pdb", "length": 5829, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001B/files/pocket_09.pdb", "length": 4556, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001B/files/pocket_10.pdb", "length": 4556, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}]} +{"project_identifier": "A001B", "accession": "A001B", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1L2W", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1L2W"], "FORCED_REFERENCES": null, "REFERENCES": ["A0A0N9NJF3", "P08008"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["MGYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSS", "YSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQ", "SVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMF"], "NUCLSEQ": [], "DOMAINS": ["Outer membrane virulence protein YopE", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4619, "SYSTRES": 296, "PROTATS": 4619, "PROTRES": 296, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.87367, "BOXSIZEY": 8.87367, "BOXSIZEZ": 6.31214, "mdName": "replica 1", "mdAtoms": 4619, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001B/files/topology.tpr", "length": 1547536, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001B/files/screenshot.jpg", "length": 19855, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001B/files/trajectory.bin", "length": 277195428, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 5001, "atoms": 4619}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_01.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_02.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_03.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_04.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_05.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_06.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_07.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_08.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_09.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_10.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_11.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_12.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_13.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_14.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_15.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_16.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001B/files/structure.pdb", "length": 374174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001B/files/trajectory.xtc", "length": 88062308, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_00.jpg", "length": 19875, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_01.jpg", "length": 19709, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_02.jpg", "length": 19956, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_03.jpg", "length": 19523, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_04.jpg", "length": 19739, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_05.jpg", "length": 19745, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_06.jpg", "length": 19589, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_07.jpg", "length": 19576, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_08.jpg", "length": 19448, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_09.jpg", "length": 19866, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_10.jpg", "length": 19362, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_11.jpg", "length": 19315, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_12.jpg", "length": 19752, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_13.jpg", "length": 19296, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_14.jpg", "length": 19739, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_15.jpg", "length": 19579, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_16.jpg", "length": 19679, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_17.jpg", "length": 19943, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_18.jpg", "length": 19794, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_00.jpg", "length": 19951, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_01.jpg", "length": 19858, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_02.jpg", "length": 20097, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_03.jpg", "length": 20258, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_04.jpg", "length": 19932, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_05.jpg", "length": 19734, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_06.jpg", "length": 20318, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_07.jpg", "length": 19716, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_08.jpg", "length": 20853, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_09.jpg", "length": 20207, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_10.jpg", "length": 19817, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_11.jpg", "length": 19739, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_12.jpg", "length": 20313, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_13.jpg", "length": 19752, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_14.jpg", "length": 20376, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_15.jpg", "length": 20209, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_16.jpg", "length": 20087, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_17.jpg", "length": 20082, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_18.jpg", "length": 20384, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_00.jpg", "length": 21668, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_01.jpg", "length": 22115, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_02.jpg", "length": 21627, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_03.jpg", "length": 21946, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_04.jpg", "length": 21730, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_05.jpg", "length": 22135, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_06.jpg", "length": 22330, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_07.jpg", "length": 22021, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_08.jpg", "length": 21629, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_09.jpg", "length": 21652, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_10.jpg", "length": 21910, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_11.jpg", "length": 21456, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_12.jpg", "length": 21761, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_13.jpg", "length": 21717, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_14.jpg", "length": 22441, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_15.jpg", "length": 21849, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_16.jpg", "length": 21385, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_17.jpg", "length": 22205, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_18.jpg", "length": 21953, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_00.jpg", "length": 19988, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_01.jpg", "length": 20275, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_02.jpg", "length": 20553, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_03.jpg", "length": 19755, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_04.jpg", "length": 20217, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_05.jpg", "length": 20281, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_06.jpg", "length": 20355, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_07.jpg", "length": 20191, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_08.jpg", "length": 20449, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_09.jpg", "length": 20415, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_10.jpg", "length": 20591, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_11.jpg", "length": 20313, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_12.jpg", "length": 20347, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_13.jpg", "length": 20219, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_14.jpg", "length": 20110, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_15.jpg", "length": 20197, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_16.jpg", "length": 19781, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_17.jpg", "length": 20139, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_18.jpg", "length": 20260, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_19.jpg", "length": 20318, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001B/files/pocket_01.pdb", "length": 30887, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001B/files/pocket_02.pdb", "length": 16281, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001B/files/pocket_03.pdb", "length": 11993, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001B/files/pocket_04.pdb", "length": 10452, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001B/files/pocket_05.pdb", "length": 8978, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001B/files/pocket_06.pdb", "length": 7638, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001B/files/pocket_07.pdb", "length": 7102, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001B/files/pocket_08.pdb", "length": 5829, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001B/files/pocket_09.pdb", "length": 4556, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001B/files/pocket_10.pdb", "length": 4556, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}]} +{"project_identifier": "A001B", "accession": "A001B", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1L2W", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1L2W"], "FORCED_REFERENCES": null, "REFERENCES": ["A0A0N9NJF3", "P08008"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["MGYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSS", "YSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQ", "SVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMF"], "NUCLSEQ": [], "DOMAINS": ["Outer membrane virulence protein YopE", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4619, "SYSTRES": 296, "PROTATS": 4619, "PROTRES": 296, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.87367, "BOXSIZEY": 8.87367, "BOXSIZEZ": 6.31214, "mdName": "replica 1", "mdAtoms": 4619, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001B/files/topology.tpr", "length": 1547536, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001B/files/screenshot.jpg", "length": 19855, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001B/files/trajectory.bin", "length": 277195428, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 5001, "atoms": 4619}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_01.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_02.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_03.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_04.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_05.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_06.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_07.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_08.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_09.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_10.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_11.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_12.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_13.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_14.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_15.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001B/files/pca_trajectory_16.bin", "length": 213120, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0, "frames": 20, "atoms": 888}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001B/files/structure.pdb", "length": 374174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001B/files/trajectory.xtc", "length": 88062308, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_00.jpg", "length": 19875, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_01.jpg", "length": 19709, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_02.jpg", "length": 19956, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_03.jpg", "length": 19523, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_04.jpg", "length": 19739, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_05.jpg", "length": 19745, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_06.jpg", "length": 19589, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_07.jpg", "length": 19576, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_08.jpg", "length": 19448, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_09.jpg", "length": 19866, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_10.jpg", "length": 19362, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_11.jpg", "length": 19315, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_12.jpg", "length": 19752, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_13.jpg", "length": 19296, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_14.jpg", "length": 19739, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_15.jpg", "length": 19579, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_16.jpg", "length": 19679, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_17.jpg", "length": 19943, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_00_screenshot_18.jpg", "length": 19794, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_00.jpg", "length": 19951, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_01.jpg", "length": 19858, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_02.jpg", "length": 20097, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_03.jpg", "length": 20258, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_04.jpg", "length": 19932, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_05.jpg", "length": 19734, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_06.jpg", "length": 20318, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_07.jpg", "length": 19716, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_08.jpg", "length": 20853, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_09.jpg", "length": 20207, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_10.jpg", "length": 19817, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_11.jpg", "length": 19739, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_12.jpg", "length": 20313, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_13.jpg", "length": 19752, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_14.jpg", "length": 20376, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_15.jpg", "length": 20209, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_16.jpg", "length": 20087, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_17.jpg", "length": 20082, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_01_screenshot_18.jpg", "length": 20384, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_00.jpg", "length": 21668, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_01.jpg", "length": 22115, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_02.jpg", "length": 21627, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_03.jpg", "length": 21946, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_04.jpg", "length": 21730, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_05.jpg", "length": 22135, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_06.jpg", "length": 22330, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_07.jpg", "length": 22021, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_08.jpg", "length": 21629, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_09.jpg", "length": 21652, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_10.jpg", "length": 21910, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_11.jpg", "length": 21456, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_12.jpg", "length": 21761, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_13.jpg", "length": 21717, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_14.jpg", "length": 22441, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_15.jpg", "length": 21849, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_16.jpg", "length": 21385, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_17.jpg", "length": 22205, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_02_screenshot_18.jpg", "length": 21953, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_00.jpg", "length": 19988, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_01.jpg", "length": 20275, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_02.jpg", "length": 20553, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_03.jpg", "length": 19755, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_04.jpg", "length": 20217, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_05.jpg", "length": 20281, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_06.jpg", "length": 20355, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_07.jpg", "length": 20191, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_08.jpg", "length": 20449, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_09.jpg", "length": 20415, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_10.jpg", "length": 20591, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_11.jpg", "length": 20313, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_12.jpg", "length": 20347, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_13.jpg", "length": 20219, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_14.jpg", "length": 20110, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_15.jpg", "length": 20197, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_16.jpg", "length": 19781, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_17.jpg", "length": 20139, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_18.jpg", "length": 20260, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001B/files/clusters_03_screenshot_19.jpg", "length": 20318, "contentType": "application/octet-stream", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001B/files/pocket_01.pdb", "length": 30887, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001B/files/pocket_02.pdb", "length": 16281, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001B/files/pocket_03.pdb", "length": 11993, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001B/files/pocket_04.pdb", "length": 10452, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001B/files/pocket_05.pdb", "length": 8978, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001B/files/pocket_06.pdb", "length": 7638, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001B/files/pocket_07.pdb", "length": 7102, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001B/files/pocket_08.pdb", "length": 5829, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001B/files/pocket_09.pdb", "length": 4556, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001B/files/pocket_10.pdb", "length": 4556, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4b4fdd9423956f1914ee", "md": 0}}]} diff --git a/data/files/A001C/project.json b/data/files/A001C/project.json new file mode 100644 index 0000000000000000000000000000000000000000..1c50bf2c8170b172be15188c58173f67c92b15e5 --- /dev/null +++ b/data/files/A001C/project.json @@ -0,0 +1,198 @@ +{ + "accession": "A001C", + "published": true, + "metadata": { + "NAME": "Dynarepo 1LFD", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1LFD" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "Q03386", + "P01112" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "GDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISEDHKLKIPENANVFYAMNSAANYDFILKKR", + "MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Ral guanine nucleotide dissociation stimulator", + "Ras-associating", + "GTPase HRas", + "GTPase HRas, N-terminally processed", + "Hypervariable region", + "Effector region" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 4036, + "SYSTRES": 254, + "PROTATS": 4036, + "PROTRES": 254, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 8.71368, + "BOXSIZEY": 8.71368, + "BOXSIZEZ": 6.19428, + "mdName": "replica 1", + "mdAtoms": 4036, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 1, + "internalId": "683f4c87fe3dce5cc8b2a884", + "creationDate": "2025-06-03T19:27:03.000Z", + "identifier": "A001C" +} \ No newline at end of file diff --git a/data/files/A001C/records.jsonl b/data/files/A001C/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..c77f54642f0cf8b1af0742965f5a15549cc94dae --- /dev/null +++ b/data/files/A001C/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001C", "accession": "A001C", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LFD", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LFD"], "FORCED_REFERENCES": null, "REFERENCES": ["Q03386", "P01112"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISEDHKLKIPENANVFYAMNSAANYDFILKKR", "MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK"], "NUCLSEQ": [], "DOMAINS": ["Ral guanine nucleotide dissociation stimulator", "Ras-associating", "GTPase HRas", "GTPase HRas, N-terminally processed", "Hypervariable region", "Effector region"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4036, "SYSTRES": 254, "PROTATS": 4036, "PROTRES": 254, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.71368, "BOXSIZEY": 8.71368, "BOXSIZEZ": 6.19428, "mdName": "replica 1", "mdAtoms": 4036, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001C/files/topology.tpr", "length": 1375304, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001C/files/screenshot.jpg", "length": 20206, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001C/files/trajectory.bin", "length": 242208432, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 5001, "atoms": 4036}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_01.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_02.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_03.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_04.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_05.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_06.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_07.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_08.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_09.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_10.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_11.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_12.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_13.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_14.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001C/files/structure.pdb", "length": 326951, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001C/files/trajectory.xtc", "length": 77102476, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_00.jpg", "length": 21088, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_01.jpg", "length": 21504, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_02.jpg", "length": 20902, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_03.jpg", "length": 21219, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_04.jpg", "length": 21447, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_05.jpg", "length": 21153, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_06.jpg", "length": 21760, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_07.jpg", "length": 21376, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_08.jpg", "length": 21118, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_09.jpg", "length": 21128, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_10.jpg", "length": 21120, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_11.jpg", "length": 20899, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_12.jpg", "length": 21885, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_13.jpg", "length": 20945, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_14.jpg", "length": 21058, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_15.jpg", "length": 21020, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_16.jpg", "length": 21178, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_17.jpg", "length": 21135, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_18.jpg", "length": 20700, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_19.jpg", "length": 21184, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_00.jpg", "length": 20532, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_01.jpg", "length": 20109, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_02.jpg", "length": 20613, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_03.jpg", "length": 20185, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_04.jpg", "length": 21047, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_05.jpg", "length": 21087, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_06.jpg", "length": 20579, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_07.jpg", "length": 21403, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_08.jpg", "length": 21932, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_09.jpg", "length": 20536, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_10.jpg", "length": 21193, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_11.jpg", "length": 21086, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_12.jpg", "length": 21505, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_13.jpg", "length": 21495, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_14.jpg", "length": 20963, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_15.jpg", "length": 20787, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_16.jpg", "length": 21045, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_17.jpg", "length": 21167, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_18.jpg", "length": 20820, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_19.jpg", "length": 20630, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001C/files/pocket_01.pdb", "length": 15075, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001C/files/pocket_02.pdb", "length": 9782, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001C/files/pocket_03.pdb", "length": 9045, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001C/files/pocket_04.pdb", "length": 7705, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001C/files/pocket_05.pdb", "length": 7303, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001C/files/pocket_06.pdb", "length": 7035, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001C/files/pocket_07.pdb", "length": 4422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001C/files/pocket_08.pdb", "length": 3484, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}]} +{"project_identifier": "A001C", "accession": "A001C", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LFD", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LFD"], "FORCED_REFERENCES": null, "REFERENCES": ["Q03386", "P01112"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISEDHKLKIPENANVFYAMNSAANYDFILKKR", "MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK"], "NUCLSEQ": [], "DOMAINS": ["Ral guanine nucleotide dissociation stimulator", "Ras-associating", "GTPase HRas", "GTPase HRas, N-terminally processed", "Hypervariable region", "Effector region"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4036, "SYSTRES": 254, "PROTATS": 4036, "PROTRES": 254, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.71368, "BOXSIZEY": 8.71368, "BOXSIZEZ": 6.19428, "mdName": "replica 1", "mdAtoms": 4036, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001C/files/topology.tpr", "length": 1375304, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001C/files/screenshot.jpg", "length": 20206, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001C/files/trajectory.bin", "length": 242208432, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 5001, "atoms": 4036}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_01.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_02.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_03.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_04.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_05.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_06.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_07.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_08.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_09.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_10.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_11.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_12.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_13.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_14.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001C/files/structure.pdb", "length": 326951, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001C/files/trajectory.xtc", "length": 77102476, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_00.jpg", "length": 21088, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_01.jpg", "length": 21504, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_02.jpg", "length": 20902, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_03.jpg", "length": 21219, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_04.jpg", "length": 21447, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_05.jpg", "length": 21153, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_06.jpg", "length": 21760, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_07.jpg", "length": 21376, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_08.jpg", "length": 21118, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_09.jpg", "length": 21128, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_10.jpg", "length": 21120, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_11.jpg", "length": 20899, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_12.jpg", "length": 21885, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_13.jpg", "length": 20945, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_14.jpg", "length": 21058, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_15.jpg", "length": 21020, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_16.jpg", "length": 21178, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_17.jpg", "length": 21135, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_18.jpg", "length": 20700, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_19.jpg", "length": 21184, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_00.jpg", "length": 20532, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_01.jpg", "length": 20109, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_02.jpg", "length": 20613, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_03.jpg", "length": 20185, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_04.jpg", "length": 21047, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_05.jpg", "length": 21087, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_06.jpg", "length": 20579, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_07.jpg", "length": 21403, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_08.jpg", "length": 21932, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_09.jpg", "length": 20536, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_10.jpg", "length": 21193, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_11.jpg", "length": 21086, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_12.jpg", "length": 21505, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_13.jpg", "length": 21495, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_14.jpg", "length": 20963, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_15.jpg", "length": 20787, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_16.jpg", "length": 21045, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_17.jpg", "length": 21167, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_18.jpg", "length": 20820, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_19.jpg", "length": 20630, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001C/files/pocket_01.pdb", "length": 15075, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001C/files/pocket_02.pdb", "length": 9782, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001C/files/pocket_03.pdb", "length": 9045, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001C/files/pocket_04.pdb", "length": 7705, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001C/files/pocket_05.pdb", "length": 7303, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001C/files/pocket_06.pdb", "length": 7035, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001C/files/pocket_07.pdb", "length": 4422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001C/files/pocket_08.pdb", "length": 3484, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}]} +{"project_identifier": "A001C", "accession": "A001C", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LFD", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LFD"], "FORCED_REFERENCES": null, "REFERENCES": ["Q03386", "P01112"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GDCCIIRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISEDHKLKIPENANVFYAMNSAANYDFILKKR", "MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK"], "NUCLSEQ": [], "DOMAINS": ["Ral guanine nucleotide dissociation stimulator", "Ras-associating", "GTPase HRas", "GTPase HRas, N-terminally processed", "Hypervariable region", "Effector region"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4036, "SYSTRES": 254, "PROTATS": 4036, "PROTRES": 254, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.71368, "BOXSIZEY": 8.71368, "BOXSIZEZ": 6.19428, "mdName": "replica 1", "mdAtoms": 4036, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001C/files/topology.tpr", "length": 1375304, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001C/files/screenshot.jpg", "length": 20206, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001C/files/trajectory.bin", "length": 242208432, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 5001, "atoms": 4036}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_01.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_02.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_03.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_04.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_05.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_06.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_07.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_08.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_09.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_10.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_11.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_12.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_13.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001C/files/pca_trajectory_14.bin", "length": 182880, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0, "frames": 20, "atoms": 762}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001C/files/structure.pdb", "length": 326951, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001C/files/trajectory.xtc", "length": 77102476, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_00.jpg", "length": 21088, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_01.jpg", "length": 21504, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_02.jpg", "length": 20902, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_03.jpg", "length": 21219, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_04.jpg", "length": 21447, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_05.jpg", "length": 21153, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_06.jpg", "length": 21760, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_07.jpg", "length": 21376, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_08.jpg", "length": 21118, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_09.jpg", "length": 21128, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_10.jpg", "length": 21120, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_11.jpg", "length": 20899, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_12.jpg", "length": 21885, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_13.jpg", "length": 20945, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_14.jpg", "length": 21058, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_15.jpg", "length": 21020, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_16.jpg", "length": 21178, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_17.jpg", "length": 21135, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_18.jpg", "length": 20700, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001C/files/clusters_00_screenshot_19.jpg", "length": 21184, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_00.jpg", "length": 20532, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_01.jpg", "length": 20109, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_02.jpg", "length": 20613, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_03.jpg", "length": 20185, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_04.jpg", "length": 21047, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_05.jpg", "length": 21087, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_06.jpg", "length": 20579, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_07.jpg", "length": 21403, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_08.jpg", "length": 21932, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_09.jpg", "length": 20536, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_10.jpg", "length": 21193, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_11.jpg", "length": 21086, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_12.jpg", "length": 21505, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_13.jpg", "length": 21495, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_14.jpg", "length": 20963, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_15.jpg", "length": 20787, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_16.jpg", "length": 21045, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_17.jpg", "length": 21167, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_18.jpg", "length": 20820, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001C/files/clusters_01_screenshot_19.jpg", "length": 20630, "contentType": "application/octet-stream", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001C/files/pocket_01.pdb", "length": 15075, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001C/files/pocket_02.pdb", "length": 9782, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001C/files/pocket_03.pdb", "length": 9045, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001C/files/pocket_04.pdb", "length": 7705, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001C/files/pocket_05.pdb", "length": 7303, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001C/files/pocket_06.pdb", "length": 7035, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001C/files/pocket_07.pdb", "length": 4422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001C/files/pocket_08.pdb", "length": 3484, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4c87fe3dce5cc8b2a884", "md": 0}}]} diff --git a/data/files/A001D/project.json b/data/files/A001D/project.json new file mode 100644 index 0000000000000000000000000000000000000000..d9291aae82563d15d989c4e9fdecc2b0f7160a20 --- /dev/null +++ b/data/files/A001D/project.json @@ -0,0 +1,306 @@ +{ + "accession": "A001D", + "published": true, + "metadata": { + "NAME": "Dynarepo 1LJ2", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1LJ2" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P03536", + "Q04637" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "KTIRIRDPNQGGKDITEEIMSG", + "PKRERKTIRIRDPNQGGKDITEEIMSG", + "HSLQNVIPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLISDYDKLFLMFKGLIQRSNYQYSF", + "MHSLQNVIPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLISDYDKLFLMFKGLIQRSNYQYSFGSE" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Non-structural protein 3", + "Dimerization", + "Interaction with host ZC3H7B", + "Interaction with host EIF4G1", + "Eukaryotic translation initiation factor 4 gamma 1", + "Disordered", + "PABPC1-binding" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 4321, + "SYSTRES": 265, + "PROTATS": 4321, + "PROTRES": 265, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "chain A-chain C interaction", + "agent_1": "chain A", + "agent_2": "chain C", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain A-chain D interaction", + "agent_1": "chain A", + "agent_2": "chain D", + "selection_1": "chain A", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "chain B-chain C interaction", + "agent_1": "chain B", + "agent_2": "chain C", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain B-chain D interaction", + "agent_1": "chain B", + "agent_2": "chain D", + "selection_1": "chain B", + "selection_2": "chain D", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 12.1659, + "BOXSIZEY": 12.1659, + "BOXSIZEZ": 8.6127, + "mdName": "replica 1", + "mdAtoms": 4321, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_02_screenshot_18.jpg", + "clusters_02_screenshot_19.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "clusters_03_screenshot_20.jpg", + "clusters_04_screenshot_00.jpg", + "clusters_04_screenshot_01.jpg", + "clusters_04_screenshot_02.jpg", + "clusters_04_screenshot_03.jpg", + "clusters_04_screenshot_04.jpg", + "clusters_04_screenshot_05.jpg", + "clusters_04_screenshot_06.jpg", + "clusters_04_screenshot_07.jpg", + "clusters_04_screenshot_08.jpg", + "clusters_04_screenshot_09.jpg", + "clusters_04_screenshot_10.jpg", + "clusters_04_screenshot_11.jpg", + "clusters_04_screenshot_12.jpg", + "clusters_04_screenshot_13.jpg", + "clusters_04_screenshot_14.jpg", + "clusters_04_screenshot_15.jpg", + "clusters_04_screenshot_16.jpg", + "clusters_04_screenshot_17.jpg", + "clusters_05_screenshot_00.jpg", + "clusters_05_screenshot_01.jpg", + "clusters_05_screenshot_02.jpg", + "clusters_05_screenshot_03.jpg", + "clusters_05_screenshot_04.jpg", + "clusters_05_screenshot_05.jpg", + "clusters_05_screenshot_06.jpg", + "clusters_05_screenshot_07.jpg", + "clusters_05_screenshot_08.jpg", + "clusters_05_screenshot_09.jpg", + "clusters_05_screenshot_10.jpg", + "clusters_05_screenshot_11.jpg", + "clusters_05_screenshot_12.jpg", + "clusters_05_screenshot_13.jpg", + "clusters_05_screenshot_14.jpg", + "clusters_05_screenshot_15.jpg", + "clusters_05_screenshot_16.jpg", + "clusters_05_screenshot_17.jpg", + "clusters_05_screenshot_18.jpg" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "clusters-04", + "clusters-05", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f4db5bcf7c4a2946bd706", + "creationDate": "2025-06-03T19:32:05.000Z", + "identifier": "A001D" +} \ No newline at end of file diff --git a/data/files/A001D/records.jsonl b/data/files/A001D/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..4793def0da6e1475ec83f18316f5052c1e8e4dc3 --- /dev/null +++ b/data/files/A001D/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001D", "accession": "A001D", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LJ2", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LJ2"], "FORCED_REFERENCES": null, "REFERENCES": ["P03536", "Q04637"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["KTIRIRDPNQGGKDITEEIMSG", "PKRERKTIRIRDPNQGGKDITEEIMSG", "HSLQNVIPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLISDYDKLFLMFKGLIQRSNYQYSF", "MHSLQNVIPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLISDYDKLFLMFKGLIQRSNYQYSFGSE"], "NUCLSEQ": [], "DOMAINS": ["Non-structural protein 3", "Dimerization", "Interaction with host ZC3H7B", "Interaction with host EIF4G1", "Eukaryotic translation initiation factor 4 gamma 1", "Disordered", "PABPC1-binding"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4321, "SYSTRES": 265, "PROTATS": 4321, "PROTRES": 265, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.1659, "BOXSIZEY": 12.1659, "BOXSIZEZ": 8.6127, "mdName": "replica 1", "mdAtoms": 4321, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001D/files/topology.tpr", "length": 1627748, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001D/files/screenshot.jpg", "length": 15778, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001D/files/trajectory.bin", "length": 259311852, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 5001, "atoms": 4321}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_01.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_02.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_03.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_04.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_05.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_06.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_07.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_08.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_09.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_10.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_11.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_12.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_13.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001D/files/structure.pdb", "length": 350036, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001D/files/trajectory.xtc", "length": 82808488, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_00.jpg", "length": 13756, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_01.jpg", "length": 13603, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_02.jpg", "length": 13704, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_03.jpg", "length": 13454, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_04.jpg", "length": 13433, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_05.jpg", "length": 13684, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_06.jpg", "length": 13260, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_07.jpg", "length": 13806, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_08.jpg", "length": 13677, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_09.jpg", "length": 13974, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_10.jpg", "length": 13530, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_11.jpg", "length": 13239, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_12.jpg", "length": 13858, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_13.jpg", "length": 13932, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_14.jpg", "length": 14215, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_15.jpg", "length": 13836, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_16.jpg", "length": 14076, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_17.jpg", "length": 13730, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_18.jpg", "length": 13598, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_19.jpg", "length": 13982, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_20.jpg", "length": 13611, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_00.jpg", "length": 13775, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_01.jpg", "length": 13406, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_02.jpg", "length": 13742, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_03.jpg", "length": 13748, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_04.jpg", "length": 13228, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_05.jpg", "length": 13487, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_06.jpg", "length": 13436, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_07.jpg", "length": 13673, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_08.jpg", "length": 14024, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_09.jpg", "length": 13158, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_10.jpg", "length": 13646, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_11.jpg", "length": 13842, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_12.jpg", "length": 13646, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_13.jpg", "length": 14246, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_14.jpg", "length": 13801, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_15.jpg", "length": 14045, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_16.jpg", "length": 13736, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_17.jpg", "length": 14641, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_18.jpg", "length": 12670, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_19.jpg", "length": 13819, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_00.jpg", "length": 15774, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_01.jpg", "length": 15555, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_02.jpg", "length": 15536, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_03.jpg", "length": 15371, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_04.jpg", "length": 15373, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_05.jpg", "length": 15475, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_06.jpg", "length": 15820, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_07.jpg", "length": 15137, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_08.jpg", "length": 15386, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_09.jpg", "length": 15398, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_10.jpg", "length": 15121, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_11.jpg", "length": 15858, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_12.jpg", "length": 15088, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_13.jpg", "length": 15713, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_14.jpg", "length": 15051, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_15.jpg", "length": 15628, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_16.jpg", "length": 15698, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_17.jpg", "length": 15170, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_18.jpg", "length": 15143, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_19.jpg", "length": 15842, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_00.jpg", "length": 14651, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_01.jpg", "length": 13449, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_02.jpg", "length": 14656, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_03.jpg", "length": 14624, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_04.jpg", "length": 14296, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_05.jpg", "length": 14870, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_06.jpg", "length": 14301, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_07.jpg", "length": 14470, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_08.jpg", "length": 14466, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_09.jpg", "length": 14344, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_10.jpg", "length": 14582, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_11.jpg", "length": 14653, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_12.jpg", "length": 14496, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_13.jpg", "length": 14302, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_14.jpg", "length": 14088, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_15.jpg", "length": 14679, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_16.jpg", "length": 14197, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_17.jpg", "length": 14554, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_18.jpg", "length": 14636, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_19.jpg", "length": 14784, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_20.jpg", "length": 14865, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_00.jpg", "length": 16589, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_01.jpg", "length": 16996, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_02.jpg", "length": 16329, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_03.jpg", "length": 16332, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_04.jpg", "length": 16682, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_05.jpg", "length": 16813, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_06.jpg", "length": 16847, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_07.jpg", "length": 16106, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_08.jpg", "length": 16658, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_09.jpg", "length": 16860, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_10.jpg", "length": 16733, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_11.jpg", "length": 16839, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_12.jpg", "length": 16456, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_13.jpg", "length": 16162, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_14.jpg", "length": 16350, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_15.jpg", "length": 16543, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_16.jpg", "length": 16532, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_17.jpg", "length": 16766, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_00.jpg", "length": 14485, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_01.jpg", "length": 14614, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_02.jpg", "length": 15157, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_03.jpg", "length": 15006, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_04.jpg", "length": 14614, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_05.jpg", "length": 15147, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_06.jpg", "length": 14943, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_07.jpg", "length": 15071, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_08.jpg", "length": 15058, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_09.jpg", "length": 14422, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_10.jpg", "length": 14778, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_11.jpg", "length": 14582, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_12.jpg", "length": 14510, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_13.jpg", "length": 15380, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_14.jpg", "length": 14874, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_15.jpg", "length": 15140, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_16.jpg", "length": 14794, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_17.jpg", "length": 14290, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_18.jpg", "length": 15270, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}]} +{"project_identifier": "A001D", "accession": "A001D", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LJ2", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LJ2"], "FORCED_REFERENCES": null, "REFERENCES": ["P03536", "Q04637"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["KTIRIRDPNQGGKDITEEIMSG", "PKRERKTIRIRDPNQGGKDITEEIMSG", "HSLQNVIPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLISDYDKLFLMFKGLIQRSNYQYSF", "MHSLQNVIPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLISDYDKLFLMFKGLIQRSNYQYSFGSE"], "NUCLSEQ": [], "DOMAINS": ["Non-structural protein 3", "Dimerization", "Interaction with host ZC3H7B", "Interaction with host EIF4G1", "Eukaryotic translation initiation factor 4 gamma 1", "Disordered", "PABPC1-binding"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4321, "SYSTRES": 265, "PROTATS": 4321, "PROTRES": 265, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.1659, "BOXSIZEY": 12.1659, "BOXSIZEZ": 8.6127, "mdName": "replica 1", "mdAtoms": 4321, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001D/files/topology.tpr", "length": 1627748, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001D/files/screenshot.jpg", "length": 15778, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001D/files/trajectory.bin", "length": 259311852, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 5001, "atoms": 4321}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_01.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_02.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_03.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_04.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_05.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_06.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_07.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_08.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_09.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_10.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_11.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_12.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_13.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001D/files/structure.pdb", "length": 350036, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001D/files/trajectory.xtc", "length": 82808488, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_00.jpg", "length": 13756, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_01.jpg", "length": 13603, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_02.jpg", "length": 13704, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_03.jpg", "length": 13454, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_04.jpg", "length": 13433, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_05.jpg", "length": 13684, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_06.jpg", "length": 13260, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_07.jpg", "length": 13806, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_08.jpg", "length": 13677, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_09.jpg", "length": 13974, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_10.jpg", "length": 13530, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_11.jpg", "length": 13239, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_12.jpg", "length": 13858, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_13.jpg", "length": 13932, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_14.jpg", "length": 14215, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_15.jpg", "length": 13836, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_16.jpg", "length": 14076, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_17.jpg", "length": 13730, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_18.jpg", "length": 13598, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_19.jpg", "length": 13982, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_20.jpg", "length": 13611, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_00.jpg", "length": 13775, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_01.jpg", "length": 13406, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_02.jpg", "length": 13742, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_03.jpg", "length": 13748, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_04.jpg", "length": 13228, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_05.jpg", "length": 13487, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_06.jpg", "length": 13436, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_07.jpg", "length": 13673, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_08.jpg", "length": 14024, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_09.jpg", "length": 13158, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_10.jpg", "length": 13646, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_11.jpg", "length": 13842, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_12.jpg", "length": 13646, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_13.jpg", "length": 14246, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_14.jpg", "length": 13801, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_15.jpg", "length": 14045, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_16.jpg", "length": 13736, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_17.jpg", "length": 14641, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_18.jpg", "length": 12670, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_19.jpg", "length": 13819, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_00.jpg", "length": 15774, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_01.jpg", "length": 15555, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_02.jpg", "length": 15536, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_03.jpg", "length": 15371, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_04.jpg", "length": 15373, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_05.jpg", "length": 15475, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_06.jpg", "length": 15820, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_07.jpg", "length": 15137, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_08.jpg", "length": 15386, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_09.jpg", "length": 15398, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_10.jpg", "length": 15121, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_11.jpg", "length": 15858, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_12.jpg", "length": 15088, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_13.jpg", "length": 15713, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_14.jpg", "length": 15051, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_15.jpg", "length": 15628, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_16.jpg", "length": 15698, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_17.jpg", "length": 15170, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_18.jpg", "length": 15143, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_19.jpg", "length": 15842, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_00.jpg", "length": 14651, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_01.jpg", "length": 13449, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_02.jpg", "length": 14656, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_03.jpg", "length": 14624, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_04.jpg", "length": 14296, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_05.jpg", "length": 14870, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_06.jpg", "length": 14301, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_07.jpg", "length": 14470, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_08.jpg", "length": 14466, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_09.jpg", "length": 14344, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_10.jpg", "length": 14582, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_11.jpg", "length": 14653, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_12.jpg", "length": 14496, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_13.jpg", "length": 14302, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_14.jpg", "length": 14088, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_15.jpg", "length": 14679, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_16.jpg", "length": 14197, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_17.jpg", "length": 14554, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_18.jpg", "length": 14636, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_19.jpg", "length": 14784, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_20.jpg", "length": 14865, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_00.jpg", "length": 16589, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_01.jpg", "length": 16996, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_02.jpg", "length": 16329, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_03.jpg", "length": 16332, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_04.jpg", "length": 16682, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_05.jpg", "length": 16813, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_06.jpg", "length": 16847, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_07.jpg", "length": 16106, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_08.jpg", "length": 16658, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_09.jpg", "length": 16860, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_10.jpg", "length": 16733, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_11.jpg", "length": 16839, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_12.jpg", "length": 16456, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_13.jpg", "length": 16162, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_14.jpg", "length": 16350, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_15.jpg", "length": 16543, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_16.jpg", "length": 16532, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_17.jpg", "length": 16766, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_00.jpg", "length": 14485, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_01.jpg", "length": 14614, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_02.jpg", "length": 15157, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_03.jpg", "length": 15006, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_04.jpg", "length": 14614, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_05.jpg", "length": 15147, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_06.jpg", "length": 14943, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_07.jpg", "length": 15071, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_08.jpg", "length": 15058, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_09.jpg", "length": 14422, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_10.jpg", "length": 14778, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_11.jpg", "length": 14582, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_12.jpg", "length": 14510, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_13.jpg", "length": 15380, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_14.jpg", "length": 14874, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_15.jpg", "length": 15140, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_16.jpg", "length": 14794, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_17.jpg", "length": 14290, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_18.jpg", "length": 15270, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}]} +{"project_identifier": "A001D", "accession": "A001D", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LJ2", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LJ2"], "FORCED_REFERENCES": null, "REFERENCES": ["P03536", "Q04637"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["KTIRIRDPNQGGKDITEEIMSG", "PKRERKTIRIRDPNQGGKDITEEIMSG", "HSLQNVIPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLISDYDKLFLMFKGLIQRSNYQYSF", "MHSLQNVIPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLISDYDKLFLMFKGLIQRSNYQYSFGSE"], "NUCLSEQ": [], "DOMAINS": ["Non-structural protein 3", "Dimerization", "Interaction with host ZC3H7B", "Interaction with host EIF4G1", "Eukaryotic translation initiation factor 4 gamma 1", "Disordered", "PABPC1-binding"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4321, "SYSTRES": 265, "PROTATS": 4321, "PROTRES": 265, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.1659, "BOXSIZEY": 12.1659, "BOXSIZEZ": 8.6127, "mdName": "replica 1", "mdAtoms": 4321, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001D/files/topology.tpr", "length": 1627748, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001D/files/screenshot.jpg", "length": 15778, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001D/files/trajectory.bin", "length": 259311852, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 5001, "atoms": 4321}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_01.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_02.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_03.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_04.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_05.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_06.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_07.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_08.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_09.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_10.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_11.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_12.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001D/files/pca_trajectory_13.bin", "length": 190800, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0, "frames": 20, "atoms": 795}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001D/files/structure.pdb", "length": 350036, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001D/files/trajectory.xtc", "length": 82808488, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_00.jpg", "length": 13756, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_01.jpg", "length": 13603, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_02.jpg", "length": 13704, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_03.jpg", "length": 13454, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_04.jpg", "length": 13433, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_05.jpg", "length": 13684, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_06.jpg", "length": 13260, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_07.jpg", "length": 13806, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_08.jpg", "length": 13677, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_09.jpg", "length": 13974, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_10.jpg", "length": 13530, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_11.jpg", "length": 13239, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_12.jpg", "length": 13858, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_13.jpg", "length": 13932, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_14.jpg", "length": 14215, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_15.jpg", "length": 13836, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_16.jpg", "length": 14076, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_17.jpg", "length": 13730, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_18.jpg", "length": 13598, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_19.jpg", "length": 13982, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001D/files/clusters_00_screenshot_20.jpg", "length": 13611, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_00.jpg", "length": 13775, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_01.jpg", "length": 13406, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_02.jpg", "length": 13742, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_03.jpg", "length": 13748, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_04.jpg", "length": 13228, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_05.jpg", "length": 13487, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_06.jpg", "length": 13436, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_07.jpg", "length": 13673, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_08.jpg", "length": 14024, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_09.jpg", "length": 13158, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_10.jpg", "length": 13646, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_11.jpg", "length": 13842, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_12.jpg", "length": 13646, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_13.jpg", "length": 14246, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_14.jpg", "length": 13801, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_15.jpg", "length": 14045, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_16.jpg", "length": 13736, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_17.jpg", "length": 14641, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_18.jpg", "length": 12670, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_01_screenshot_19.jpg", "length": 13819, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_00.jpg", "length": 15774, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_01.jpg", "length": 15555, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_02.jpg", "length": 15536, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_03.jpg", "length": 15371, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_04.jpg", "length": 15373, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_05.jpg", "length": 15475, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_06.jpg", "length": 15820, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_07.jpg", "length": 15137, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_08.jpg", "length": 15386, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_09.jpg", "length": 15398, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_10.jpg", "length": 15121, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_11.jpg", "length": 15858, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_12.jpg", "length": 15088, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_13.jpg", "length": 15713, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_14.jpg", "length": 15051, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_15.jpg", "length": 15628, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_16.jpg", "length": 15698, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_17.jpg", "length": 15170, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_18.jpg", "length": 15143, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_02_screenshot_19.jpg", "length": 15842, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_00.jpg", "length": 14651, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_01.jpg", "length": 13449, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_02.jpg", "length": 14656, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_03.jpg", "length": 14624, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_04.jpg", "length": 14296, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_05.jpg", "length": 14870, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_06.jpg", "length": 14301, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_07.jpg", "length": 14470, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_08.jpg", "length": 14466, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_09.jpg", "length": 14344, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_10.jpg", "length": 14582, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_11.jpg", "length": 14653, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_12.jpg", "length": 14496, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_13.jpg", "length": 14302, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_14.jpg", "length": 14088, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_15.jpg", "length": 14679, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_16.jpg", "length": 14197, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_17.jpg", "length": 14554, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_18.jpg", "length": 14636, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_19.jpg", "length": 14784, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A001D/files/clusters_03_screenshot_20.jpg", "length": 14865, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_00.jpg", "length": 16589, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_01.jpg", "length": 16996, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_02.jpg", "length": 16329, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_03.jpg", "length": 16332, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_04.jpg", "length": 16682, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_05.jpg", "length": 16813, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_06.jpg", "length": 16847, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_07.jpg", "length": 16106, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_08.jpg", "length": 16658, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_09.jpg", "length": 16860, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_10.jpg", "length": 16733, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_11.jpg", "length": 16839, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_12.jpg", "length": 16456, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_13.jpg", "length": 16162, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_14.jpg", "length": 16350, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_15.jpg", "length": 16543, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_16.jpg", "length": 16532, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_04_screenshot_17.jpg", "length": 16766, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_00.jpg", "length": 14485, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_01.jpg", "length": 14614, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_02.jpg", "length": 15157, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_03.jpg", "length": 15006, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_04.jpg", "length": 14614, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_05.jpg", "length": 15147, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_06.jpg", "length": 14943, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_07.jpg", "length": 15071, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_08.jpg", "length": 15058, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_09.jpg", "length": 14422, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_10.jpg", "length": 14778, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_11.jpg", "length": 14582, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_12.jpg", "length": 14510, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_13.jpg", "length": 15380, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_14.jpg", "length": 14874, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_15.jpg", "length": 15140, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_16.jpg", "length": 14794, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_17.jpg", "length": 14290, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001D/files/clusters_05_screenshot_18.jpg", "length": 15270, "contentType": "application/octet-stream", "metadata": {"project": "683f4db5bcf7c4a2946bd706", "md": 0}}]} diff --git a/data/files/A001E/project.json b/data/files/A001E/project.json new file mode 100644 index 0000000000000000000000000000000000000000..46ad3be35bd00f7ecdd1d05d7e70f6d1c5ba9215 --- /dev/null +++ b/data/files/A001E/project.json @@ -0,0 +1,184 @@ +{ + "accession": "A001E", + "published": true, + "metadata": { + "NAME": "Dynarepo 1LP1", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1LP1" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P38507" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "KFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK", + "KFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAP" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Immunoglobulin G-binding protein A" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 1735, + "SYSTRES": 109, + "PROTATS": 1735, + "PROTRES": 109, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 7.22277, + "BOXSIZEY": 7.22277, + "BOXSIZEZ": 5.12788, + "mdName": "replica 1", + "mdAtoms": 1735, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "pocket_01.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f4eb455e8add357cf5be0", + "creationDate": "2025-06-03T19:36:20.000Z", + "identifier": "A001E" +} \ No newline at end of file diff --git a/data/files/A001E/records.jsonl b/data/files/A001E/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..e6c2f18139cce254c0db2ca05d7c554b81f40dd0 --- /dev/null +++ b/data/files/A001E/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001E", "accession": "A001E", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LP1", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LP1"], "FORCED_REFERENCES": null, "REFERENCES": ["P38507"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["KFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK", "KFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAP"], "NUCLSEQ": [], "DOMAINS": ["Immunoglobulin G-binding protein A"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 1735, "SYSTRES": 109, "PROTATS": 1735, "PROTRES": 109, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 7.22277, "BOXSIZEY": 7.22277, "BOXSIZEZ": 5.12788, "mdName": "replica 1", "mdAtoms": 1735, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001E/files/topology.tpr", "length": 753260, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001E/files/screenshot.jpg", "length": 17396, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001E/files/trajectory.bin", "length": 104120820, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 5001, "atoms": 1735}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_01.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_02.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_03.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_04.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_05.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_06.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_07.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_08.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_09.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_10.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_11.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_12.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_13.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_14.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_15.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_16.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001E/files/structure.pdb", "length": 140570, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001E/files/trajectory.xtc", "length": 33237784, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_00.jpg", "length": 17055, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_01.jpg", "length": 16953, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_02.jpg", "length": 16994, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_03.jpg", "length": 17247, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_04.jpg", "length": 16405, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_05.jpg", "length": 16643, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_06.jpg", "length": 17031, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_07.jpg", "length": 17095, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_08.jpg", "length": 17083, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_09.jpg", "length": 16871, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_10.jpg", "length": 16541, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_11.jpg", "length": 17027, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_12.jpg", "length": 17003, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_13.jpg", "length": 16702, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_14.jpg", "length": 16172, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_15.jpg", "length": 16621, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_16.jpg", "length": 16665, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_17.jpg", "length": 16709, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_18.jpg", "length": 16334, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_19.jpg", "length": 16728, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_00.jpg", "length": 16476, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_01.jpg", "length": 16601, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_02.jpg", "length": 16985, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_03.jpg", "length": 16737, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_04.jpg", "length": 16684, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_05.jpg", "length": 16218, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_06.jpg", "length": 16912, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_07.jpg", "length": 16924, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_08.jpg", "length": 16655, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_09.jpg", "length": 16847, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_10.jpg", "length": 16749, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_11.jpg", "length": 16209, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_12.jpg", "length": 16368, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_13.jpg", "length": 16271, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_14.jpg", "length": 16281, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_15.jpg", "length": 16307, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_16.jpg", "length": 16397, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001E/files/pocket_01.pdb", "length": 3216, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}]} +{"project_identifier": "A001E", "accession": "A001E", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LP1", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LP1"], "FORCED_REFERENCES": null, "REFERENCES": ["P38507"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["KFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK", "KFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAP"], "NUCLSEQ": [], "DOMAINS": ["Immunoglobulin G-binding protein A"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 1735, "SYSTRES": 109, "PROTATS": 1735, "PROTRES": 109, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 7.22277, "BOXSIZEY": 7.22277, "BOXSIZEZ": 5.12788, "mdName": "replica 1", "mdAtoms": 1735, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001E/files/topology.tpr", "length": 753260, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001E/files/screenshot.jpg", "length": 17396, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001E/files/trajectory.bin", "length": 104120820, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 5001, "atoms": 1735}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_01.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_02.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_03.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_04.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_05.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_06.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_07.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_08.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_09.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_10.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_11.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_12.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_13.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_14.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_15.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_16.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001E/files/structure.pdb", "length": 140570, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001E/files/trajectory.xtc", "length": 33237784, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_00.jpg", "length": 17055, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_01.jpg", "length": 16953, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_02.jpg", "length": 16994, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_03.jpg", "length": 17247, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_04.jpg", "length": 16405, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_05.jpg", "length": 16643, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_06.jpg", "length": 17031, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_07.jpg", "length": 17095, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_08.jpg", "length": 17083, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_09.jpg", "length": 16871, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_10.jpg", "length": 16541, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_11.jpg", "length": 17027, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_12.jpg", "length": 17003, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_13.jpg", "length": 16702, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_14.jpg", "length": 16172, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_15.jpg", "length": 16621, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_16.jpg", "length": 16665, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_17.jpg", "length": 16709, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_18.jpg", "length": 16334, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_19.jpg", "length": 16728, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_00.jpg", "length": 16476, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_01.jpg", "length": 16601, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_02.jpg", "length": 16985, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_03.jpg", "length": 16737, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_04.jpg", "length": 16684, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_05.jpg", "length": 16218, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_06.jpg", "length": 16912, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_07.jpg", "length": 16924, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_08.jpg", "length": 16655, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_09.jpg", "length": 16847, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_10.jpg", "length": 16749, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_11.jpg", "length": 16209, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_12.jpg", "length": 16368, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_13.jpg", "length": 16271, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_14.jpg", "length": 16281, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_15.jpg", "length": 16307, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_16.jpg", "length": 16397, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001E/files/pocket_01.pdb", "length": 3216, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}]} +{"project_identifier": "A001E", "accession": "A001E", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LP1", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LP1"], "FORCED_REFERENCES": null, "REFERENCES": ["P38507"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["KFNKELSVAGREIVTLPNLNDPQKKAFIFSLWDDPSQSANLLAEAKKLNDAQAPK", "KFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAP"], "NUCLSEQ": [], "DOMAINS": ["Immunoglobulin G-binding protein A"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 1735, "SYSTRES": 109, "PROTATS": 1735, "PROTRES": 109, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 7.22277, "BOXSIZEY": 7.22277, "BOXSIZEZ": 5.12788, "mdName": "replica 1", "mdAtoms": 1735, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001E/files/topology.tpr", "length": 753260, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001E/files/screenshot.jpg", "length": 17396, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001E/files/trajectory.bin", "length": 104120820, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 5001, "atoms": 1735}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_01.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_02.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_03.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_04.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_05.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_06.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_07.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_08.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_09.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_10.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_11.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_12.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_13.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_14.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_15.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001E/files/pca_trajectory_16.bin", "length": 78480, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0, "frames": 20, "atoms": 327}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001E/files/structure.pdb", "length": 140570, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001E/files/trajectory.xtc", "length": 33237784, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_00.jpg", "length": 17055, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_01.jpg", "length": 16953, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_02.jpg", "length": 16994, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_03.jpg", "length": 17247, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_04.jpg", "length": 16405, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_05.jpg", "length": 16643, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_06.jpg", "length": 17031, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_07.jpg", "length": 17095, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_08.jpg", "length": 17083, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_09.jpg", "length": 16871, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_10.jpg", "length": 16541, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_11.jpg", "length": 17027, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_12.jpg", "length": 17003, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_13.jpg", "length": 16702, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_14.jpg", "length": 16172, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_15.jpg", "length": 16621, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_16.jpg", "length": 16665, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_17.jpg", "length": 16709, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_18.jpg", "length": 16334, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001E/files/clusters_00_screenshot_19.jpg", "length": 16728, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_00.jpg", "length": 16476, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_01.jpg", "length": 16601, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_02.jpg", "length": 16985, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_03.jpg", "length": 16737, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_04.jpg", "length": 16684, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_05.jpg", "length": 16218, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_06.jpg", "length": 16912, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_07.jpg", "length": 16924, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_08.jpg", "length": 16655, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_09.jpg", "length": 16847, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_10.jpg", "length": 16749, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_11.jpg", "length": 16209, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_12.jpg", "length": 16368, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_13.jpg", "length": 16271, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_14.jpg", "length": 16281, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_15.jpg", "length": 16307, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001E/files/clusters_01_screenshot_16.jpg", "length": 16397, "contentType": "application/octet-stream", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001E/files/pocket_01.pdb", "length": 3216, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4eb455e8add357cf5be0", "md": 0}}]} diff --git a/data/files/A001F/project.json b/data/files/A001F/project.json new file mode 100644 index 0000000000000000000000000000000000000000..fa4e5fc46eb59bdef5d4f2bc837c97807ccae0ed --- /dev/null +++ b/data/files/A001F/project.json @@ -0,0 +1,189 @@ +{ + "accession": "A001F", + "published": true, + "metadata": { + "NAME": "Dynarepo 1LX5", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1LX5" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P18075", + "P27038" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "ETQECLFFNANWERDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCIEKKDSPEVYFCCCEGNMCNEKFSYFPE", + "QACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Bone morphogenetic protein 7", + "Activin receptor type-2A" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 3094, + "SYSTRES": 198, + "PROTATS": 3094, + "PROTRES": 198, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 9.97602, + "BOXSIZEY": 9.97602, + "BOXSIZEZ": 7.07223, + "mdName": "replica 1", + "mdAtoms": 3094, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f4f8aec8949a2ae628ec9", + "creationDate": "2025-06-03T19:39:54.000Z", + "identifier": "A001F" +} \ No newline at end of file diff --git a/data/files/A001F/records.jsonl b/data/files/A001F/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..3103e998f5bc9e6edab6b1d2760694b510d1934b --- /dev/null +++ b/data/files/A001F/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001F", "accession": "A001F", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LX5", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LX5"], "FORCED_REFERENCES": null, "REFERENCES": ["P18075", "P27038"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["ETQECLFFNANWERDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCIEKKDSPEVYFCCCEGNMCNEKFSYFPE", "QACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH"], "NUCLSEQ": [], "DOMAINS": ["Bone morphogenetic protein 7", "Activin receptor type-2A"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3094, "SYSTRES": 198, "PROTATS": 3094, "PROTRES": 198, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.97602, "BOXSIZEY": 9.97602, "BOXSIZEZ": 7.07223, "mdName": "replica 1", "mdAtoms": 3094, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001F/files/topology.tpr", "length": 1191700, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001F/files/screenshot.jpg", "length": 17879, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001F/files/trajectory.bin", "length": 185677128, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 5001, "atoms": 3094}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_01.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_02.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_03.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_04.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_05.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_06.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_07.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_08.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_09.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_10.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001F/files/structure.pdb", "length": 250649, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001F/files/trajectory.xtc", "length": 59289704, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_00.jpg", "length": 18624, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_01.jpg", "length": 19137, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_02.jpg", "length": 18315, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_03.jpg", "length": 18025, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_04.jpg", "length": 18757, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_05.jpg", "length": 18629, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_06.jpg", "length": 18191, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_07.jpg", "length": 18452, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_08.jpg", "length": 19122, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_09.jpg", "length": 18515, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_10.jpg", "length": 18521, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_11.jpg", "length": 18059, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_12.jpg", "length": 18889, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_13.jpg", "length": 18197, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_14.jpg", "length": 18588, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_15.jpg", "length": 19001, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_16.jpg", "length": 17988, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_17.jpg", "length": 18330, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_18.jpg", "length": 17928, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_19.jpg", "length": 18596, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_20.jpg", "length": 18251, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_00.jpg", "length": 17555, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_01.jpg", "length": 16964, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_02.jpg", "length": 16838, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_03.jpg", "length": 17529, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_04.jpg", "length": 17114, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_05.jpg", "length": 17042, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_06.jpg", "length": 16970, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_07.jpg", "length": 16632, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_08.jpg", "length": 16707, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_09.jpg", "length": 17264, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_10.jpg", "length": 17819, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_11.jpg", "length": 17548, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_12.jpg", "length": 17635, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_13.jpg", "length": 17550, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_14.jpg", "length": 17445, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_15.jpg", "length": 17342, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_16.jpg", "length": 16436, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_17.jpg", "length": 16866, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_18.jpg", "length": 17667, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_19.jpg", "length": 16977, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001F/files/pocket_01.pdb", "length": 14003, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001F/files/pocket_02.pdb", "length": 12931, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001F/files/pocket_03.pdb", "length": 11122, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001F/files/pocket_04.pdb", "length": 10787, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001F/files/pocket_05.pdb", "length": 6365, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001F/files/pocket_06.pdb", "length": 3886, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}]} +{"project_identifier": "A001F", "accession": "A001F", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LX5", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LX5"], "FORCED_REFERENCES": null, "REFERENCES": ["P18075", "P27038"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["ETQECLFFNANWERDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCIEKKDSPEVYFCCCEGNMCNEKFSYFPE", "QACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH"], "NUCLSEQ": [], "DOMAINS": ["Bone morphogenetic protein 7", "Activin receptor type-2A"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3094, "SYSTRES": 198, "PROTATS": 3094, "PROTRES": 198, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.97602, "BOXSIZEY": 9.97602, "BOXSIZEZ": 7.07223, "mdName": "replica 1", "mdAtoms": 3094, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001F/files/topology.tpr", "length": 1191700, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001F/files/screenshot.jpg", "length": 17879, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001F/files/trajectory.bin", "length": 185677128, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 5001, "atoms": 3094}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_01.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_02.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_03.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_04.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_05.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_06.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_07.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_08.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_09.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_10.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001F/files/structure.pdb", "length": 250649, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001F/files/trajectory.xtc", "length": 59289704, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_00.jpg", "length": 18624, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_01.jpg", "length": 19137, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_02.jpg", "length": 18315, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_03.jpg", "length": 18025, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_04.jpg", "length": 18757, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_05.jpg", "length": 18629, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_06.jpg", "length": 18191, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_07.jpg", "length": 18452, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_08.jpg", "length": 19122, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_09.jpg", "length": 18515, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_10.jpg", "length": 18521, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_11.jpg", "length": 18059, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_12.jpg", "length": 18889, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_13.jpg", "length": 18197, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_14.jpg", "length": 18588, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_15.jpg", "length": 19001, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_16.jpg", "length": 17988, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_17.jpg", "length": 18330, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_18.jpg", "length": 17928, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_19.jpg", "length": 18596, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_20.jpg", "length": 18251, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_00.jpg", "length": 17555, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_01.jpg", "length": 16964, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_02.jpg", "length": 16838, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_03.jpg", "length": 17529, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_04.jpg", "length": 17114, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_05.jpg", "length": 17042, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_06.jpg", "length": 16970, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_07.jpg", "length": 16632, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_08.jpg", "length": 16707, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_09.jpg", "length": 17264, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_10.jpg", "length": 17819, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_11.jpg", "length": 17548, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_12.jpg", "length": 17635, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_13.jpg", "length": 17550, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_14.jpg", "length": 17445, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_15.jpg", "length": 17342, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_16.jpg", "length": 16436, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_17.jpg", "length": 16866, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_18.jpg", "length": 17667, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_19.jpg", "length": 16977, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001F/files/pocket_01.pdb", "length": 14003, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001F/files/pocket_02.pdb", "length": 12931, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001F/files/pocket_03.pdb", "length": 11122, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001F/files/pocket_04.pdb", "length": 10787, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001F/files/pocket_05.pdb", "length": 6365, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001F/files/pocket_06.pdb", "length": 3886, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}]} +{"project_identifier": "A001F", "accession": "A001F", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LX5", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LX5"], "FORCED_REFERENCES": null, "REFERENCES": ["P18075", "P27038"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["ETQECLFFNANWERDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCIEKKDSPEVYFCCCEGNMCNEKFSYFPE", "QACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH"], "NUCLSEQ": [], "DOMAINS": ["Bone morphogenetic protein 7", "Activin receptor type-2A"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3094, "SYSTRES": 198, "PROTATS": 3094, "PROTRES": 198, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.97602, "BOXSIZEY": 9.97602, "BOXSIZEZ": 7.07223, "mdName": "replica 1", "mdAtoms": 3094, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001F/files/topology.tpr", "length": 1191700, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001F/files/screenshot.jpg", "length": 17879, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001F/files/trajectory.bin", "length": 185677128, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 5001, "atoms": 3094}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_01.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_02.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_03.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_04.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_05.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_06.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_07.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_08.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_09.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001F/files/pca_trajectory_10.bin", "length": 142560, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0, "frames": 20, "atoms": 594}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001F/files/structure.pdb", "length": 250649, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001F/files/trajectory.xtc", "length": 59289704, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_00.jpg", "length": 18624, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_01.jpg", "length": 19137, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_02.jpg", "length": 18315, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_03.jpg", "length": 18025, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_04.jpg", "length": 18757, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_05.jpg", "length": 18629, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_06.jpg", "length": 18191, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_07.jpg", "length": 18452, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_08.jpg", "length": 19122, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_09.jpg", "length": 18515, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_10.jpg", "length": 18521, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_11.jpg", "length": 18059, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_12.jpg", "length": 18889, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_13.jpg", "length": 18197, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_14.jpg", "length": 18588, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_15.jpg", "length": 19001, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_16.jpg", "length": 17988, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_17.jpg", "length": 18330, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_18.jpg", "length": 17928, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_19.jpg", "length": 18596, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001F/files/clusters_00_screenshot_20.jpg", "length": 18251, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_00.jpg", "length": 17555, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_01.jpg", "length": 16964, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_02.jpg", "length": 16838, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_03.jpg", "length": 17529, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_04.jpg", "length": 17114, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_05.jpg", "length": 17042, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_06.jpg", "length": 16970, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_07.jpg", "length": 16632, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_08.jpg", "length": 16707, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_09.jpg", "length": 17264, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_10.jpg", "length": 17819, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_11.jpg", "length": 17548, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_12.jpg", "length": 17635, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_13.jpg", "length": 17550, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_14.jpg", "length": 17445, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_15.jpg", "length": 17342, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_16.jpg", "length": 16436, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_17.jpg", "length": 16866, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_18.jpg", "length": 17667, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001F/files/clusters_01_screenshot_19.jpg", "length": 16977, "contentType": "application/octet-stream", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001F/files/pocket_01.pdb", "length": 14003, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001F/files/pocket_02.pdb", "length": 12931, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001F/files/pocket_03.pdb", "length": 11122, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001F/files/pocket_04.pdb", "length": 10787, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001F/files/pocket_05.pdb", "length": 6365, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001F/files/pocket_06.pdb", "length": 3886, "contentType": "chemical/x-pdb", "metadata": {"project": "683f4f8aec8949a2ae628ec9", "md": 0}}]} diff --git a/data/files/A001G/project.json b/data/files/A001G/project.json new file mode 100644 index 0000000000000000000000000000000000000000..f1e7854fee3e0269edec053ecf751dbdc45a899f --- /dev/null +++ b/data/files/A001G/project.json @@ -0,0 +1,194 @@ +{ + "accession": "A001G", + "published": true, + "metadata": { + "NAME": "Dynarepo 1LZW", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1LZW" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P0A8Q6", + "P0ABH9" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "EKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVAYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA", + "MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDE" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "ATP-dependent Clp protease adapter protein ClpS", + "ATP-dependent Clp protease ATP-binding subunit ClpA", + "Clp R", + "Repeat 1", + "Repeat 2", + "Disordered" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 3780, + "SYSTRES": 237, + "PROTATS": 3780, + "PROTRES": 237, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 9.12617, + "BOXSIZEY": 9.12617, + "BOXSIZEZ": 6.40912, + "mdName": "replica 1", + "mdAtoms": 3780, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f508fe8722aa078718381", + "creationDate": "2025-06-03T19:44:15.000Z", + "identifier": "A001G" +} \ No newline at end of file diff --git a/data/files/A001G/records.jsonl b/data/files/A001G/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..cc975c39f2b36cd2bcc4857a88736a535811f549 --- /dev/null +++ b/data/files/A001G/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001G", "accession": "A001G", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LZW", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LZW"], "FORCED_REFERENCES": null, "REFERENCES": ["P0A8Q6", "P0ABH9"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["EKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVAYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA", "MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDE"], "NUCLSEQ": [], "DOMAINS": ["ATP-dependent Clp protease adapter protein ClpS", "ATP-dependent Clp protease ATP-binding subunit ClpA", "Clp R", "Repeat 1", "Repeat 2", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3780, "SYSTRES": 237, "PROTATS": 3780, "PROTRES": 237, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.12617, "BOXSIZEY": 9.12617, "BOXSIZEZ": 6.40912, "mdName": "replica 1", "mdAtoms": 3780, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001G/files/topology.tpr", "length": 1323080, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001G/files/screenshot.jpg", "length": 19584, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001G/files/trajectory.bin", "length": 226845360, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 5001, "atoms": 3780}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_01.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_02.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_03.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_04.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_05.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_06.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_07.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_08.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_09.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_10.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_11.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_12.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001G/files/structure.pdb", "length": 306215, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001G/files/trajectory.xtc", "length": 72238116, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_00.jpg", "length": 20380, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_01.jpg", "length": 20758, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_02.jpg", "length": 20267, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_03.jpg", "length": 19965, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_04.jpg", "length": 20605, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_05.jpg", "length": 19885, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_06.jpg", "length": 20301, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_07.jpg", "length": 20596, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_08.jpg", "length": 20217, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_09.jpg", "length": 20690, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_10.jpg", "length": 20320, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_11.jpg", "length": 19661, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_12.jpg", "length": 20492, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_13.jpg", "length": 20470, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_14.jpg", "length": 20416, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_15.jpg", "length": 20566, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_16.jpg", "length": 20127, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_17.jpg", "length": 19860, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_18.jpg", "length": 20020, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_19.jpg", "length": 19795, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_00.jpg", "length": 19985, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_01.jpg", "length": 19713, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_02.jpg", "length": 20013, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_03.jpg", "length": 19421, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_04.jpg", "length": 19966, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_05.jpg", "length": 19858, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_06.jpg", "length": 19992, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_07.jpg", "length": 19991, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_08.jpg", "length": 19560, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_09.jpg", "length": 20378, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_10.jpg", "length": 19932, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_11.jpg", "length": 20020, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_12.jpg", "length": 19554, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_13.jpg", "length": 19467, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_14.jpg", "length": 19874, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_15.jpg", "length": 19461, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_16.jpg", "length": 19563, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_17.jpg", "length": 20250, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_18.jpg", "length": 19445, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_19.jpg", "length": 19959, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001G/files/pocket_01.pdb", "length": 12395, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001G/files/pocket_02.pdb", "length": 9715, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001G/files/pocket_03.pdb", "length": 8174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001G/files/pocket_04.pdb", "length": 7772, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001G/files/pocket_05.pdb", "length": 6834, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001G/files/pocket_06.pdb", "length": 4355, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}]} +{"project_identifier": "A001G", "accession": "A001G", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LZW", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LZW"], "FORCED_REFERENCES": null, "REFERENCES": ["P0A8Q6", "P0ABH9"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["EKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVAYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA", "MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDE"], "NUCLSEQ": [], "DOMAINS": ["ATP-dependent Clp protease adapter protein ClpS", "ATP-dependent Clp protease ATP-binding subunit ClpA", "Clp R", "Repeat 1", "Repeat 2", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3780, "SYSTRES": 237, "PROTATS": 3780, "PROTRES": 237, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.12617, "BOXSIZEY": 9.12617, "BOXSIZEZ": 6.40912, "mdName": "replica 1", "mdAtoms": 3780, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001G/files/topology.tpr", "length": 1323080, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001G/files/screenshot.jpg", "length": 19584, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001G/files/trajectory.bin", "length": 226845360, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 5001, "atoms": 3780}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_01.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_02.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_03.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_04.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_05.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_06.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_07.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_08.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_09.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_10.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_11.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_12.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001G/files/structure.pdb", "length": 306215, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001G/files/trajectory.xtc", "length": 72238116, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_00.jpg", "length": 20380, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_01.jpg", "length": 20758, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_02.jpg", "length": 20267, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_03.jpg", "length": 19965, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_04.jpg", "length": 20605, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_05.jpg", "length": 19885, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_06.jpg", "length": 20301, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_07.jpg", "length": 20596, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_08.jpg", "length": 20217, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_09.jpg", "length": 20690, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_10.jpg", "length": 20320, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_11.jpg", "length": 19661, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_12.jpg", "length": 20492, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_13.jpg", "length": 20470, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_14.jpg", "length": 20416, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_15.jpg", "length": 20566, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_16.jpg", "length": 20127, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_17.jpg", "length": 19860, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_18.jpg", "length": 20020, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_19.jpg", "length": 19795, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_00.jpg", "length": 19985, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_01.jpg", "length": 19713, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_02.jpg", "length": 20013, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_03.jpg", "length": 19421, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_04.jpg", "length": 19966, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_05.jpg", "length": 19858, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_06.jpg", "length": 19992, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_07.jpg", "length": 19991, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_08.jpg", "length": 19560, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_09.jpg", "length": 20378, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_10.jpg", "length": 19932, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_11.jpg", "length": 20020, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_12.jpg", "length": 19554, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_13.jpg", "length": 19467, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_14.jpg", "length": 19874, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_15.jpg", "length": 19461, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_16.jpg", "length": 19563, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_17.jpg", "length": 20250, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_18.jpg", "length": 19445, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_19.jpg", "length": 19959, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001G/files/pocket_01.pdb", "length": 12395, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001G/files/pocket_02.pdb", "length": 9715, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001G/files/pocket_03.pdb", "length": 8174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001G/files/pocket_04.pdb", "length": 7772, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001G/files/pocket_05.pdb", "length": 6834, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001G/files/pocket_06.pdb", "length": 4355, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}]} +{"project_identifier": "A001G", "accession": "A001G", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1LZW", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1LZW"], "FORCED_REFERENCES": null, "REFERENCES": ["P0A8Q6", "P0ABH9"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["EKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVAYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA", "MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDE"], "NUCLSEQ": [], "DOMAINS": ["ATP-dependent Clp protease adapter protein ClpS", "ATP-dependent Clp protease ATP-binding subunit ClpA", "Clp R", "Repeat 1", "Repeat 2", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3780, "SYSTRES": 237, "PROTATS": 3780, "PROTRES": 237, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.12617, "BOXSIZEY": 9.12617, "BOXSIZEZ": 6.40912, "mdName": "replica 1", "mdAtoms": 3780, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001G/files/topology.tpr", "length": 1323080, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001G/files/screenshot.jpg", "length": 19584, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001G/files/trajectory.bin", "length": 226845360, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 5001, "atoms": 3780}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_01.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_02.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_03.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_04.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_05.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_06.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_07.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_08.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_09.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_10.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_11.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001G/files/pca_trajectory_12.bin", "length": 170640, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0, "frames": 20, "atoms": 711}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001G/files/structure.pdb", "length": 306215, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001G/files/trajectory.xtc", "length": 72238116, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_00.jpg", "length": 20380, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_01.jpg", "length": 20758, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_02.jpg", "length": 20267, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_03.jpg", "length": 19965, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_04.jpg", "length": 20605, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_05.jpg", "length": 19885, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_06.jpg", "length": 20301, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_07.jpg", "length": 20596, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_08.jpg", "length": 20217, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_09.jpg", "length": 20690, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_10.jpg", "length": 20320, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_11.jpg", "length": 19661, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_12.jpg", "length": 20492, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_13.jpg", "length": 20470, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_14.jpg", "length": 20416, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_15.jpg", "length": 20566, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_16.jpg", "length": 20127, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_17.jpg", "length": 19860, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_18.jpg", "length": 20020, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001G/files/clusters_00_screenshot_19.jpg", "length": 19795, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_00.jpg", "length": 19985, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_01.jpg", "length": 19713, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_02.jpg", "length": 20013, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_03.jpg", "length": 19421, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_04.jpg", "length": 19966, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_05.jpg", "length": 19858, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_06.jpg", "length": 19992, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_07.jpg", "length": 19991, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_08.jpg", "length": 19560, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_09.jpg", "length": 20378, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_10.jpg", "length": 19932, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_11.jpg", "length": 20020, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_12.jpg", "length": 19554, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_13.jpg", "length": 19467, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_14.jpg", "length": 19874, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_15.jpg", "length": 19461, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_16.jpg", "length": 19563, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_17.jpg", "length": 20250, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_18.jpg", "length": 19445, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001G/files/clusters_01_screenshot_19.jpg", "length": 19959, "contentType": "application/octet-stream", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001G/files/pocket_01.pdb", "length": 12395, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001G/files/pocket_02.pdb", "length": 9715, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001G/files/pocket_03.pdb", "length": 8174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001G/files/pocket_04.pdb", "length": 7772, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001G/files/pocket_05.pdb", "length": 6834, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001G/files/pocket_06.pdb", "length": 4355, "contentType": "chemical/x-pdb", "metadata": {"project": "683f508fe8722aa078718381", "md": 0}}]} diff --git a/data/files/A001H/project.json b/data/files/A001H/project.json new file mode 100644 index 0000000000000000000000000000000000000000..f4db488ef49a3df507c59c4e218e81b560cbc939 --- /dev/null +++ b/data/files/A001H/project.json @@ -0,0 +1,199 @@ +{ + "accession": "A001H", + "published": true, + "metadata": { + "NAME": "Dynarepo 1M10", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1M10" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P04275", + "P07359" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "HDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMEQLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPP", + "HPICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAVTSNVASVQCDNSDKFPVYKYPGKGCPTL" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "von Willebrand factor", + "VWFA 1; binding site for platelet glycoprotein Ib", + "Platelet glycoprotein Ib alpha chain", + "Glycocalicin", + "LRRNT", + "LRRCT" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 7468, + "SYSTRES": 466, + "PROTATS": 7468, + "PROTRES": 466, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 10.1917, + "BOXSIZEY": 10.1917, + "BOXSIZEZ": 7.20074, + "mdName": "replica 1", + "mdAtoms": 7468, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f51f01c69c04265d3bb2f", + "creationDate": "2025-06-03T19:50:08.000Z", + "identifier": "A001H" +} \ No newline at end of file diff --git a/data/files/A001H/records.jsonl b/data/files/A001H/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..2ebfaca747eabdcc1faa7da2e29ea0032d3964ad --- /dev/null +++ b/data/files/A001H/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001H", "accession": "A001H", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1M10", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1M10"], "FORCED_REFERENCES": null, "REFERENCES": ["P04275", "P07359"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["HDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMEQLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPP", "HPICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAVTSNVASVQCDNSDKFPVYKYPGKGCPTL"], "NUCLSEQ": [], "DOMAINS": ["von Willebrand factor", "VWFA 1; binding site for platelet glycoprotein Ib", "Platelet glycoprotein Ib alpha chain", "Glycocalicin", "LRRNT", "LRRCT"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 7468, "SYSTRES": 466, "PROTATS": 7468, "PROTRES": 466, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.1917, "BOXSIZEY": 10.1917, "BOXSIZEZ": 7.20074, "mdName": "replica 1", "mdAtoms": 7468, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001H/files/topology.tpr", "length": 2323560, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001H/files/screenshot.jpg", "length": 26831, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001H/files/trajectory.bin", "length": 448169616, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 5001, "atoms": 7468}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_01.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_02.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_03.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_04.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_05.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_06.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_07.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_08.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_09.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_10.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_11.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_12.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_13.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_14.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_15.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001H/files/structure.pdb", "length": 604943, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001H/files/trajectory.xtc", "length": 142138184, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_00.jpg", "length": 26388, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_01.jpg", "length": 26366, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_02.jpg", "length": 26127, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_03.jpg", "length": 26078, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_04.jpg", "length": 25681, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_05.jpg", "length": 25751, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_06.jpg", "length": 25829, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_07.jpg", "length": 25642, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_08.jpg", "length": 26055, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_09.jpg", "length": 25761, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_10.jpg", "length": 25850, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_11.jpg", "length": 26255, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_12.jpg", "length": 26921, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_13.jpg", "length": 26420, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_14.jpg", "length": 25943, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_15.jpg", "length": 25816, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_16.jpg", "length": 26137, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_17.jpg", "length": 26148, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_00.jpg", "length": 24947, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_01.jpg", "length": 24601, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_02.jpg", "length": 24848, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_03.jpg", "length": 24687, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_04.jpg", "length": 24302, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_05.jpg", "length": 24260, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_06.jpg", "length": 24369, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_07.jpg", "length": 24773, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_08.jpg", "length": 24471, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_09.jpg", "length": 24448, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_10.jpg", "length": 23957, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_11.jpg", "length": 24510, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_12.jpg", "length": 24119, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_13.jpg", "length": 25209, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_14.jpg", "length": 24748, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_15.jpg", "length": 24453, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_16.jpg", "length": 24296, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_17.jpg", "length": 24729, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_18.jpg", "length": 24665, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_19.jpg", "length": 24978, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001H/files/pocket_01.pdb", "length": 59362, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001H/files/pocket_02.pdb", "length": 20904, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001H/files/pocket_03.pdb", "length": 15946, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001H/files/pocket_04.pdb", "length": 12462, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001H/files/pocket_05.pdb", "length": 9380, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001H/files/pocket_06.pdb", "length": 6834, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001H/files/pocket_07.pdb", "length": 6633, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001H/files/pocket_08.pdb", "length": 5762, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001H/files/pocket_09.pdb", "length": 5695, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001H/files/pocket_10.pdb", "length": 5092, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}]} +{"project_identifier": "A001H", "accession": "A001H", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1M10", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1M10"], "FORCED_REFERENCES": null, "REFERENCES": ["P04275", "P07359"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["HDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMEQLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPP", "HPICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAVTSNVASVQCDNSDKFPVYKYPGKGCPTL"], "NUCLSEQ": [], "DOMAINS": ["von Willebrand factor", "VWFA 1; binding site for platelet glycoprotein Ib", "Platelet glycoprotein Ib alpha chain", "Glycocalicin", "LRRNT", "LRRCT"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 7468, "SYSTRES": 466, "PROTATS": 7468, "PROTRES": 466, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.1917, "BOXSIZEY": 10.1917, "BOXSIZEZ": 7.20074, "mdName": "replica 1", "mdAtoms": 7468, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001H/files/topology.tpr", "length": 2323560, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001H/files/screenshot.jpg", "length": 26831, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001H/files/trajectory.bin", "length": 448169616, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 5001, "atoms": 7468}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_01.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_02.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_03.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_04.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_05.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_06.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_07.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_08.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_09.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_10.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_11.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_12.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_13.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_14.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_15.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001H/files/structure.pdb", "length": 604943, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001H/files/trajectory.xtc", "length": 142138184, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_00.jpg", "length": 26388, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_01.jpg", "length": 26366, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_02.jpg", "length": 26127, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_03.jpg", "length": 26078, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_04.jpg", "length": 25681, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_05.jpg", "length": 25751, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_06.jpg", "length": 25829, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_07.jpg", "length": 25642, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_08.jpg", "length": 26055, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_09.jpg", "length": 25761, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_10.jpg", "length": 25850, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_11.jpg", "length": 26255, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_12.jpg", "length": 26921, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_13.jpg", "length": 26420, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_14.jpg", "length": 25943, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_15.jpg", "length": 25816, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_16.jpg", "length": 26137, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_17.jpg", "length": 26148, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_00.jpg", "length": 24947, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_01.jpg", "length": 24601, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_02.jpg", "length": 24848, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_03.jpg", "length": 24687, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_04.jpg", "length": 24302, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_05.jpg", "length": 24260, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_06.jpg", "length": 24369, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_07.jpg", "length": 24773, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_08.jpg", "length": 24471, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_09.jpg", "length": 24448, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_10.jpg", "length": 23957, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_11.jpg", "length": 24510, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_12.jpg", "length": 24119, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_13.jpg", "length": 25209, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_14.jpg", "length": 24748, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_15.jpg", "length": 24453, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_16.jpg", "length": 24296, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_17.jpg", "length": 24729, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_18.jpg", "length": 24665, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_19.jpg", "length": 24978, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001H/files/pocket_01.pdb", "length": 59362, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001H/files/pocket_02.pdb", "length": 20904, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001H/files/pocket_03.pdb", "length": 15946, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001H/files/pocket_04.pdb", "length": 12462, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001H/files/pocket_05.pdb", "length": 9380, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001H/files/pocket_06.pdb", "length": 6834, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001H/files/pocket_07.pdb", "length": 6633, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001H/files/pocket_08.pdb", "length": 5762, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001H/files/pocket_09.pdb", "length": 5695, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001H/files/pocket_10.pdb", "length": 5092, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}]} +{"project_identifier": "A001H", "accession": "A001H", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1M10", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1M10"], "FORCED_REFERENCES": null, "REFERENCES": ["P04275", "P07359"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["HDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMEQLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPP", "HPICEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAVTSNVASVQCDNSDKFPVYKYPGKGCPTL"], "NUCLSEQ": [], "DOMAINS": ["von Willebrand factor", "VWFA 1; binding site for platelet glycoprotein Ib", "Platelet glycoprotein Ib alpha chain", "Glycocalicin", "LRRNT", "LRRCT"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 7468, "SYSTRES": 466, "PROTATS": 7468, "PROTRES": 466, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.1917, "BOXSIZEY": 10.1917, "BOXSIZEZ": 7.20074, "mdName": "replica 1", "mdAtoms": 7468, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001H/files/topology.tpr", "length": 2323560, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001H/files/screenshot.jpg", "length": 26831, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001H/files/trajectory.bin", "length": 448169616, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 5001, "atoms": 7468}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_01.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_02.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_03.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_04.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_05.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_06.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_07.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_08.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_09.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_10.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_11.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_12.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_13.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_14.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001H/files/pca_trajectory_15.bin", "length": 335520, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0, "frames": 20, "atoms": 1398}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001H/files/structure.pdb", "length": 604943, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001H/files/trajectory.xtc", "length": 142138184, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_00.jpg", "length": 26388, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_01.jpg", "length": 26366, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_02.jpg", "length": 26127, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_03.jpg", "length": 26078, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_04.jpg", "length": 25681, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_05.jpg", "length": 25751, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_06.jpg", "length": 25829, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_07.jpg", "length": 25642, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_08.jpg", "length": 26055, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_09.jpg", "length": 25761, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_10.jpg", "length": 25850, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_11.jpg", "length": 26255, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_12.jpg", "length": 26921, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_13.jpg", "length": 26420, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_14.jpg", "length": 25943, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_15.jpg", "length": 25816, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_16.jpg", "length": 26137, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001H/files/clusters_00_screenshot_17.jpg", "length": 26148, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_00.jpg", "length": 24947, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_01.jpg", "length": 24601, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_02.jpg", "length": 24848, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_03.jpg", "length": 24687, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_04.jpg", "length": 24302, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_05.jpg", "length": 24260, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_06.jpg", "length": 24369, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_07.jpg", "length": 24773, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_08.jpg", "length": 24471, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_09.jpg", "length": 24448, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_10.jpg", "length": 23957, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_11.jpg", "length": 24510, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_12.jpg", "length": 24119, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_13.jpg", "length": 25209, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_14.jpg", "length": 24748, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_15.jpg", "length": 24453, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_16.jpg", "length": 24296, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_17.jpg", "length": 24729, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_18.jpg", "length": 24665, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001H/files/clusters_01_screenshot_19.jpg", "length": 24978, "contentType": "application/octet-stream", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001H/files/pocket_01.pdb", "length": 59362, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001H/files/pocket_02.pdb", "length": 20904, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001H/files/pocket_03.pdb", "length": 15946, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001H/files/pocket_04.pdb", "length": 12462, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001H/files/pocket_05.pdb", "length": 9380, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001H/files/pocket_06.pdb", "length": 6834, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001H/files/pocket_07.pdb", "length": 6633, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001H/files/pocket_08.pdb", "length": 5762, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001H/files/pocket_09.pdb", "length": 5695, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001H/files/pocket_10.pdb", "length": 5092, "contentType": "chemical/x-pdb", "metadata": {"project": "683f51f01c69c04265d3bb2f", "md": 0}}]} diff --git a/data/files/A001I/project.json b/data/files/A001I/project.json new file mode 100644 index 0000000000000000000000000000000000000000..9d07e581dce2e64e615cbff071a59795f5f2973c --- /dev/null +++ b/data/files/A001I/project.json @@ -0,0 +1,189 @@ +{ + "accession": "A001I", + "published": true, + "metadata": { + "NAME": "Dynarepo 1MQ8", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1MQ8" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P05362", + "P20701" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI", + "QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQT" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Intercellular adhesion molecule 1", + "Ig-like C2-type 1", + "Ig-like C2-type 2", + "Cell attachment site; atypical", + "Integrin alpha-L", + "VWFA" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 5705, + "SYSTRES": 361, + "PROTATS": 5705, + "PROTRES": 361, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 11.9032, + "BOXSIZEY": 11.9032, + "BOXSIZEZ": 8.40875, + "mdName": "replica 1", + "mdAtoms": 5705, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_00_screenshot_21.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_01_screenshot_20.jpg", + "pocket_01.pdb", + "pocket_02.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f53a1b9e3119e941968bb", + "creationDate": "2025-06-03T19:57:21.000Z", + "identifier": "A001I" +} \ No newline at end of file diff --git a/data/files/A001I/records.jsonl b/data/files/A001I/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..bf43924eb9790da6fd9421abe23cab464b95ca72 --- /dev/null +++ b/data/files/A001I/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001I", "accession": "A001I", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1MQ8", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1MQ8"], "FORCED_REFERENCES": null, "REFERENCES": ["P05362", "P20701"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI", "QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQT"], "NUCLSEQ": [], "DOMAINS": ["Intercellular adhesion molecule 1", "Ig-like C2-type 1", "Ig-like C2-type 2", "Cell attachment site; atypical", "Integrin alpha-L", "VWFA"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 5705, "SYSTRES": 361, "PROTATS": 5705, "PROTRES": 361, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.9032, "BOXSIZEY": 11.9032, "BOXSIZEZ": 8.40875, "mdName": "replica 1", "mdAtoms": 5705, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001I/files/topology.tpr", "length": 1959144, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001I/files/screenshot.jpg", "length": 18024, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001I/files/trajectory.bin", "length": 342368460, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 5001, "atoms": 5705}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_01.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_02.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_03.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_04.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_05.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_06.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_07.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_08.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001I/files/structure.pdb", "length": 462140, "contentType": "chemical/x-pdb", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001I/files/trajectory.xtc", "length": 108926208, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_00.jpg", "length": 18387, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_01.jpg", "length": 18738, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_02.jpg", "length": 17924, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_03.jpg", "length": 17643, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_04.jpg", "length": 17614, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_05.jpg", "length": 18064, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_06.jpg", "length": 18286, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_07.jpg", "length": 18583, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_08.jpg", "length": 17417, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_09.jpg", "length": 17457, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_10.jpg", "length": 16893, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_11.jpg", "length": 18311, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_12.jpg", "length": 17534, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_13.jpg", "length": 18359, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_14.jpg", "length": 16894, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_15.jpg", "length": 18600, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_16.jpg", "length": 16991, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_17.jpg", "length": 18179, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_18.jpg", "length": 17754, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_19.jpg", "length": 18254, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_20.jpg", "length": 17414, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_21.jpg", "length": 18315, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_00.jpg", "length": 18681, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_01.jpg", "length": 18523, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_02.jpg", "length": 18765, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_03.jpg", "length": 17071, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_04.jpg", "length": 18308, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_05.jpg", "length": 18003, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_06.jpg", "length": 18568, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_07.jpg", "length": 18259, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_08.jpg", "length": 17071, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_09.jpg", "length": 17296, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_10.jpg", "length": 16605, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_11.jpg", "length": 18273, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_12.jpg", "length": 18674, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_13.jpg", "length": 16866, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_14.jpg", "length": 17877, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_15.jpg", "length": 18006, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_16.jpg", "length": 18594, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_17.jpg", "length": 17893, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_18.jpg", "length": 18490, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_19.jpg", "length": 17756, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_20.jpg", "length": 18070, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001I/files/pocket_01.pdb", "length": 8442, "contentType": "chemical/x-pdb", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001I/files/pocket_02.pdb", "length": 3752, "contentType": "chemical/x-pdb", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}]} +{"project_identifier": "A001I", "accession": "A001I", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1MQ8", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1MQ8"], "FORCED_REFERENCES": null, "REFERENCES": ["P05362", "P20701"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI", "QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQT"], "NUCLSEQ": [], "DOMAINS": ["Intercellular adhesion molecule 1", "Ig-like C2-type 1", "Ig-like C2-type 2", "Cell attachment site; atypical", "Integrin alpha-L", "VWFA"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 5705, "SYSTRES": 361, "PROTATS": 5705, "PROTRES": 361, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.9032, "BOXSIZEY": 11.9032, "BOXSIZEZ": 8.40875, "mdName": "replica 1", "mdAtoms": 5705, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001I/files/topology.tpr", "length": 1959144, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001I/files/screenshot.jpg", "length": 18024, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001I/files/trajectory.bin", "length": 342368460, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 5001, "atoms": 5705}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_01.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_02.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_03.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_04.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_05.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_06.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_07.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_08.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001I/files/structure.pdb", "length": 462140, "contentType": "chemical/x-pdb", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001I/files/trajectory.xtc", "length": 108926208, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_00.jpg", "length": 18387, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_01.jpg", "length": 18738, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_02.jpg", "length": 17924, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_03.jpg", "length": 17643, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_04.jpg", "length": 17614, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_05.jpg", "length": 18064, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_06.jpg", "length": 18286, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_07.jpg", "length": 18583, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_08.jpg", "length": 17417, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_09.jpg", "length": 17457, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_10.jpg", "length": 16893, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_11.jpg", "length": 18311, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_12.jpg", "length": 17534, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_13.jpg", "length": 18359, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_14.jpg", "length": 16894, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_15.jpg", "length": 18600, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_16.jpg", "length": 16991, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_17.jpg", "length": 18179, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_18.jpg", "length": 17754, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_19.jpg", "length": 18254, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_20.jpg", "length": 17414, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_21.jpg", "length": 18315, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_00.jpg", "length": 18681, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_01.jpg", "length": 18523, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_02.jpg", "length": 18765, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_03.jpg", "length": 17071, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_04.jpg", "length": 18308, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_05.jpg", "length": 18003, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_06.jpg", "length": 18568, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_07.jpg", "length": 18259, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_08.jpg", "length": 17071, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_09.jpg", "length": 17296, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_10.jpg", "length": 16605, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_11.jpg", "length": 18273, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_12.jpg", "length": 18674, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_13.jpg", "length": 16866, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_14.jpg", "length": 17877, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_15.jpg", "length": 18006, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_16.jpg", "length": 18594, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_17.jpg", "length": 17893, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_18.jpg", "length": 18490, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_19.jpg", "length": 17756, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_20.jpg", "length": 18070, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001I/files/pocket_01.pdb", "length": 8442, "contentType": "chemical/x-pdb", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001I/files/pocket_02.pdb", "length": 3752, "contentType": "chemical/x-pdb", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}]} +{"project_identifier": "A001I", "accession": "A001I", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1MQ8", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1MQ8"], "FORCED_REFERENCES": null, "REFERENCES": ["P05362", "P20701"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI", "QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQT"], "NUCLSEQ": [], "DOMAINS": ["Intercellular adhesion molecule 1", "Ig-like C2-type 1", "Ig-like C2-type 2", "Cell attachment site; atypical", "Integrin alpha-L", "VWFA"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 5705, "SYSTRES": 361, "PROTATS": 5705, "PROTRES": 361, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.9032, "BOXSIZEY": 11.9032, "BOXSIZEZ": 8.40875, "mdName": "replica 1", "mdAtoms": 5705, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001I/files/topology.tpr", "length": 1959144, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001I/files/screenshot.jpg", "length": 18024, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001I/files/trajectory.bin", "length": 342368460, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 5001, "atoms": 5705}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_01.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_02.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_03.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_04.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_05.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_06.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_07.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001I/files/pca_trajectory_08.bin", "length": 259920, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0, "frames": 20, "atoms": 1083}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001I/files/structure.pdb", "length": 462140, "contentType": "chemical/x-pdb", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001I/files/trajectory.xtc", "length": 108926208, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_00.jpg", "length": 18387, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_01.jpg", "length": 18738, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_02.jpg", "length": 17924, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_03.jpg", "length": 17643, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_04.jpg", "length": 17614, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_05.jpg", "length": 18064, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_06.jpg", "length": 18286, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_07.jpg", "length": 18583, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_08.jpg", "length": 17417, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_09.jpg", "length": 17457, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_10.jpg", "length": 16893, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_11.jpg", "length": 18311, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_12.jpg", "length": 17534, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_13.jpg", "length": 18359, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_14.jpg", "length": 16894, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_15.jpg", "length": 18600, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_16.jpg", "length": 16991, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_17.jpg", "length": 18179, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_18.jpg", "length": 17754, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_19.jpg", "length": 18254, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_20.jpg", "length": 17414, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001I/files/clusters_00_screenshot_21.jpg", "length": 18315, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_00.jpg", "length": 18681, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_01.jpg", "length": 18523, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_02.jpg", "length": 18765, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_03.jpg", "length": 17071, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_04.jpg", "length": 18308, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_05.jpg", "length": 18003, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_06.jpg", "length": 18568, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_07.jpg", "length": 18259, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_08.jpg", "length": 17071, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_09.jpg", "length": 17296, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_10.jpg", "length": 16605, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_11.jpg", "length": 18273, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_12.jpg", "length": 18674, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_13.jpg", "length": 16866, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_14.jpg", "length": 17877, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_15.jpg", "length": 18006, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_16.jpg", "length": 18594, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_17.jpg", "length": 17893, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_18.jpg", "length": 18490, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_19.jpg", "length": 17756, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A001I/files/clusters_01_screenshot_20.jpg", "length": 18070, "contentType": "application/octet-stream", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001I/files/pocket_01.pdb", "length": 8442, "contentType": "chemical/x-pdb", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001I/files/pocket_02.pdb", "length": 3752, "contentType": "chemical/x-pdb", "metadata": {"project": "683f53a1b9e3119e941968bb", "md": 0}}]} diff --git a/data/files/A001J/project.json b/data/files/A001J/project.json new file mode 100644 index 0000000000000000000000000000000000000000..dfe3f265aded911d23895820b6a29fb2c23bbc52 --- /dev/null +++ b/data/files/A001J/project.json @@ -0,0 +1,311 @@ +{ + "accession": "A001J", + "published": true, + "metadata": { + "NAME": "Dynarepo 1MTN", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1MTN" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P00766", + "P00974" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "CGVPAIQPVLS", + "ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN", + "IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY", + "RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Chymotrypsin A chain A", + "Chymotrypsin A chain B", + "Chymotrypsin A chain C", + "Peptidase S1", + "Pancreatic trypsin inhibitor", + "BPTI/Kunitz inhibitor", + "Reactive bond for trypsin" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 4389, + "SYSTRES": 297, + "PROTATS": 4389, + "PROTRES": 297, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "chain A-chain C interaction", + "agent_1": "chain A", + "agent_2": "chain C", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain B-chain C interaction", + "agent_1": "chain B", + "agent_2": "chain C", + "selection_1": "chain A", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "chain B-chain D interaction", + "agent_1": "chain B", + "agent_2": "chain D", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain C-chain D interaction", + "agent_1": "chain C", + "agent_2": "chain D", + "selection_1": "chain B", + "selection_2": "chain D", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 9.09646, + "BOXSIZEY": 9.09646, + "BOXSIZEZ": 6.48086, + "mdName": "replica 1", + "mdAtoms": 4389, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_00_screenshot_21.jpg", + "clusters_00_screenshot_22.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_01_screenshot_20.jpg", + "clusters_01_screenshot_21.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_02_screenshot_18.jpg", + "clusters_02_screenshot_19.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "clusters_04_screenshot_00.jpg", + "clusters_04_screenshot_01.jpg", + "clusters_04_screenshot_02.jpg", + "clusters_04_screenshot_03.jpg", + "clusters_04_screenshot_04.jpg", + "clusters_04_screenshot_05.jpg", + "clusters_04_screenshot_06.jpg", + "clusters_04_screenshot_07.jpg", + "clusters_04_screenshot_08.jpg", + "clusters_04_screenshot_09.jpg", + "clusters_04_screenshot_10.jpg", + "clusters_04_screenshot_11.jpg", + "clusters_04_screenshot_12.jpg", + "clusters_04_screenshot_13.jpg", + "clusters_04_screenshot_14.jpg", + "clusters_04_screenshot_15.jpg", + "clusters_04_screenshot_16.jpg", + "clusters_04_screenshot_17.jpg", + "clusters_04_screenshot_18.jpg", + "clusters_04_screenshot_19.jpg", + "clusters_05_screenshot_00.jpg", + "clusters_05_screenshot_01.jpg", + "clusters_05_screenshot_02.jpg", + "clusters_05_screenshot_03.jpg", + "clusters_05_screenshot_04.jpg", + "clusters_05_screenshot_05.jpg", + "clusters_05_screenshot_06.jpg", + "clusters_05_screenshot_07.jpg", + "clusters_05_screenshot_08.jpg", + "clusters_05_screenshot_09.jpg", + "clusters_05_screenshot_10.jpg", + "clusters_05_screenshot_11.jpg", + "clusters_05_screenshot_12.jpg", + "clusters_05_screenshot_13.jpg", + "clusters_05_screenshot_14.jpg", + "clusters_05_screenshot_15.jpg", + "clusters_05_screenshot_16.jpg", + "clusters_05_screenshot_17.jpg", + "clusters_05_screenshot_18.jpg" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "clusters-04", + "clusters-05", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f54f9f678dbfea25cb161", + "creationDate": "2025-06-03T20:03:05.000Z", + "identifier": "A001J" +} \ No newline at end of file diff --git a/data/files/A001J/records.jsonl b/data/files/A001J/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..a851ece7bf93c3e6668fd038776e3bba8196352c --- /dev/null +++ b/data/files/A001J/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001J", "accession": "A001J", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1MTN", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1MTN"], "FORCED_REFERENCES": null, "REFERENCES": ["P00766", "P00974"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["CGVPAIQPVLS", "ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN", "IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY", "RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA"], "NUCLSEQ": [], "DOMAINS": ["Chymotrypsin A chain A", "Chymotrypsin A chain B", "Chymotrypsin A chain C", "Peptidase S1", "Pancreatic trypsin inhibitor", "BPTI/Kunitz inhibitor", "Reactive bond for trypsin"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4389, "SYSTRES": 297, "PROTATS": 4389, "PROTRES": 297, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain C-chain D interaction", "agent_1": "chain C", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.09646, "BOXSIZEY": 9.09646, "BOXSIZEZ": 6.48086, "mdName": "replica 1", "mdAtoms": 4389, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001J/files/topology.tpr", "length": 1496320, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001J/files/screenshot.jpg", "length": 20954, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001J/files/trajectory.bin", "length": 263392668, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 5001, "atoms": 4389}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_01.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_02.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_03.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_04.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_05.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_06.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_07.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_08.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_09.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_10.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_11.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_12.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_13.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001J/files/structure.pdb", "length": 355544, "contentType": "chemical/x-pdb", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001J/files/trajectory.xtc", "length": 83579900, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_00.jpg", "length": 21062, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_01.jpg", "length": 20859, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_02.jpg", "length": 21180, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_03.jpg", "length": 19534, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_04.jpg", "length": 21600, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_05.jpg", "length": 20521, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_06.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_07.jpg", "length": 19796, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_08.jpg", "length": 21065, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_09.jpg", "length": 21042, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_10.jpg", "length": 20840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_11.jpg", "length": 21054, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_12.jpg", "length": 21417, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_13.jpg", "length": 21102, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_14.jpg", "length": 19387, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_15.jpg", "length": 20604, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_16.jpg", "length": 19509, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_17.jpg", "length": 20238, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_18.jpg", "length": 20186, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_19.jpg", "length": 20587, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_20.jpg", "length": 19443, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_21.jpg", "length": 21509, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_22.jpg", "length": 21278, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_00.jpg", "length": 21913, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_01.jpg", "length": 21451, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_02.jpg", "length": 21799, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_03.jpg", "length": 21540, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_04.jpg", "length": 22377, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_05.jpg", "length": 22330, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_06.jpg", "length": 22078, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_07.jpg", "length": 21971, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_08.jpg", "length": 21975, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_09.jpg", "length": 22348, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_10.jpg", "length": 22180, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_11.jpg", "length": 20504, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_12.jpg", "length": 20664, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_13.jpg", "length": 22105, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_14.jpg", "length": 21919, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_15.jpg", "length": 21989, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_16.jpg", "length": 21869, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_17.jpg", "length": 22611, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_18.jpg", "length": 22076, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_19.jpg", "length": 20623, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_20.jpg", "length": 20446, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_21.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_21.jpg", "length": 21637, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_00.jpg", "length": 21018, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_01.jpg", "length": 21115, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_02.jpg", "length": 21538, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_03.jpg", "length": 21119, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_04.jpg", "length": 21432, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_05.jpg", "length": 21305, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_06.jpg", "length": 20031, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_07.jpg", "length": 21721, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_08.jpg", "length": 21260, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_09.jpg", "length": 21508, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_10.jpg", "length": 20104, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_11.jpg", "length": 21420, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_12.jpg", "length": 20635, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_13.jpg", "length": 20104, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_14.jpg", "length": 20119, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_15.jpg", "length": 19786, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_16.jpg", "length": 19524, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_17.jpg", "length": 19619, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_18.jpg", "length": 21190, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_19.jpg", "length": 19768, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_00.jpg", "length": 22532, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_01.jpg", "length": 22431, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_02.jpg", "length": 22131, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_03.jpg", "length": 22070, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_04.jpg", "length": 22615, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_05.jpg", "length": 22300, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_06.jpg", "length": 22916, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_07.jpg", "length": 22023, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_08.jpg", "length": 22679, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_09.jpg", "length": 22269, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_10.jpg", "length": 21333, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_11.jpg", "length": 22515, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_12.jpg", "length": 22738, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_13.jpg", "length": 20461, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_14.jpg", "length": 22442, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_15.jpg", "length": 23014, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_16.jpg", "length": 20366, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_17.jpg", "length": 22165, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_18.jpg", "length": 20989, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_19.jpg", "length": 22661, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_00.jpg", "length": 22518, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_01.jpg", "length": 22371, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_02.jpg", "length": 22649, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_03.jpg", "length": 22853, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_04.jpg", "length": 22679, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_05.jpg", "length": 22564, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_06.jpg", "length": 22645, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_07.jpg", "length": 22395, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_08.jpg", "length": 21989, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_09.jpg", "length": 22782, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_10.jpg", "length": 22638, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_11.jpg", "length": 23232, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_12.jpg", "length": 21844, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_13.jpg", "length": 21932, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_14.jpg", "length": 22057, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_15.jpg", "length": 22707, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_16.jpg", "length": 22494, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_17.jpg", "length": 21603, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_18.jpg", "length": 22738, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_19.jpg", "length": 22850, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_00.jpg", "length": 20551, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_01.jpg", "length": 20592, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_02.jpg", "length": 20175, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_03.jpg", "length": 19343, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_04.jpg", "length": 19930, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_05.jpg", "length": 20846, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_06.jpg", "length": 20386, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_07.jpg", "length": 20639, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_08.jpg", "length": 20728, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_09.jpg", "length": 20669, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_10.jpg", "length": 20691, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_11.jpg", "length": 20514, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_12.jpg", "length": 19311, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_13.jpg", "length": 19742, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_14.jpg", "length": 19107, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_15.jpg", "length": 20682, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_16.jpg", "length": 19210, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_17.jpg", "length": 20426, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_18.jpg", "length": 19614, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}]} +{"project_identifier": "A001J", "accession": "A001J", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1MTN", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1MTN"], "FORCED_REFERENCES": null, "REFERENCES": ["P00766", "P00974"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["CGVPAIQPVLS", "ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN", "IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY", "RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA"], "NUCLSEQ": [], "DOMAINS": ["Chymotrypsin A chain A", "Chymotrypsin A chain B", "Chymotrypsin A chain C", "Peptidase S1", "Pancreatic trypsin inhibitor", "BPTI/Kunitz inhibitor", "Reactive bond for trypsin"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4389, "SYSTRES": 297, "PROTATS": 4389, "PROTRES": 297, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain C-chain D interaction", "agent_1": "chain C", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.09646, "BOXSIZEY": 9.09646, "BOXSIZEZ": 6.48086, "mdName": "replica 1", "mdAtoms": 4389, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001J/files/topology.tpr", "length": 1496320, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001J/files/screenshot.jpg", "length": 20954, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001J/files/trajectory.bin", "length": 263392668, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 5001, "atoms": 4389}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_01.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_02.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_03.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_04.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_05.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_06.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_07.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_08.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_09.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_10.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_11.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_12.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_13.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001J/files/structure.pdb", "length": 355544, "contentType": "chemical/x-pdb", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001J/files/trajectory.xtc", "length": 83579900, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_00.jpg", "length": 21062, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_01.jpg", "length": 20859, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_02.jpg", "length": 21180, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_03.jpg", "length": 19534, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_04.jpg", "length": 21600, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_05.jpg", "length": 20521, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_06.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_07.jpg", "length": 19796, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_08.jpg", "length": 21065, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_09.jpg", "length": 21042, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_10.jpg", "length": 20840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_11.jpg", "length": 21054, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_12.jpg", "length": 21417, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_13.jpg", "length": 21102, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_14.jpg", "length": 19387, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_15.jpg", "length": 20604, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_16.jpg", "length": 19509, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_17.jpg", "length": 20238, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_18.jpg", "length": 20186, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_19.jpg", "length": 20587, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_20.jpg", "length": 19443, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_21.jpg", "length": 21509, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_22.jpg", "length": 21278, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_00.jpg", "length": 21913, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_01.jpg", "length": 21451, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_02.jpg", "length": 21799, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_03.jpg", "length": 21540, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_04.jpg", "length": 22377, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_05.jpg", "length": 22330, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_06.jpg", "length": 22078, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_07.jpg", "length": 21971, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_08.jpg", "length": 21975, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_09.jpg", "length": 22348, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_10.jpg", "length": 22180, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_11.jpg", "length": 20504, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_12.jpg", "length": 20664, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_13.jpg", "length": 22105, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_14.jpg", "length": 21919, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_15.jpg", "length": 21989, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_16.jpg", "length": 21869, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_17.jpg", "length": 22611, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_18.jpg", "length": 22076, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_19.jpg", "length": 20623, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_20.jpg", "length": 20446, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_21.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_21.jpg", "length": 21637, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_00.jpg", "length": 21018, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_01.jpg", "length": 21115, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_02.jpg", "length": 21538, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_03.jpg", "length": 21119, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_04.jpg", "length": 21432, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_05.jpg", "length": 21305, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_06.jpg", "length": 20031, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_07.jpg", "length": 21721, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_08.jpg", "length": 21260, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_09.jpg", "length": 21508, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_10.jpg", "length": 20104, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_11.jpg", "length": 21420, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_12.jpg", "length": 20635, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_13.jpg", "length": 20104, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_14.jpg", "length": 20119, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_15.jpg", "length": 19786, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_16.jpg", "length": 19524, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_17.jpg", "length": 19619, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_18.jpg", "length": 21190, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_19.jpg", "length": 19768, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_00.jpg", "length": 22532, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_01.jpg", "length": 22431, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_02.jpg", "length": 22131, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_03.jpg", "length": 22070, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_04.jpg", "length": 22615, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_05.jpg", "length": 22300, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_06.jpg", "length": 22916, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_07.jpg", "length": 22023, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_08.jpg", "length": 22679, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_09.jpg", "length": 22269, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_10.jpg", "length": 21333, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_11.jpg", "length": 22515, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_12.jpg", "length": 22738, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_13.jpg", "length": 20461, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_14.jpg", "length": 22442, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_15.jpg", "length": 23014, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_16.jpg", "length": 20366, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_17.jpg", "length": 22165, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_18.jpg", "length": 20989, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_19.jpg", "length": 22661, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_00.jpg", "length": 22518, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_01.jpg", "length": 22371, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_02.jpg", "length": 22649, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_03.jpg", "length": 22853, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_04.jpg", "length": 22679, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_05.jpg", "length": 22564, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_06.jpg", "length": 22645, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_07.jpg", "length": 22395, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_08.jpg", "length": 21989, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_09.jpg", "length": 22782, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_10.jpg", "length": 22638, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_11.jpg", "length": 23232, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_12.jpg", "length": 21844, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_13.jpg", "length": 21932, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_14.jpg", "length": 22057, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_15.jpg", "length": 22707, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_16.jpg", "length": 22494, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_17.jpg", "length": 21603, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_18.jpg", "length": 22738, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_19.jpg", "length": 22850, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_00.jpg", "length": 20551, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_01.jpg", "length": 20592, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_02.jpg", "length": 20175, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_03.jpg", "length": 19343, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_04.jpg", "length": 19930, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_05.jpg", "length": 20846, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_06.jpg", "length": 20386, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_07.jpg", "length": 20639, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_08.jpg", "length": 20728, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_09.jpg", "length": 20669, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_10.jpg", "length": 20691, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_11.jpg", "length": 20514, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_12.jpg", "length": 19311, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_13.jpg", "length": 19742, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_14.jpg", "length": 19107, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_15.jpg", "length": 20682, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_16.jpg", "length": 19210, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_17.jpg", "length": 20426, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_18.jpg", "length": 19614, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}]} +{"project_identifier": "A001J", "accession": "A001J", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1MTN", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1MTN"], "FORCED_REFERENCES": null, "REFERENCES": ["P00766", "P00974"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["CGVPAIQPVLS", "ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN", "IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY", "RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA"], "NUCLSEQ": [], "DOMAINS": ["Chymotrypsin A chain A", "Chymotrypsin A chain B", "Chymotrypsin A chain C", "Peptidase S1", "Pancreatic trypsin inhibitor", "BPTI/Kunitz inhibitor", "Reactive bond for trypsin"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4389, "SYSTRES": 297, "PROTATS": 4389, "PROTRES": 297, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain C-chain D interaction", "agent_1": "chain C", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.09646, "BOXSIZEY": 9.09646, "BOXSIZEZ": 6.48086, "mdName": "replica 1", "mdAtoms": 4389, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001J/files/topology.tpr", "length": 1496320, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001J/files/screenshot.jpg", "length": 20954, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001J/files/trajectory.bin", "length": 263392668, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 5001, "atoms": 4389}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_01.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_02.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_03.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_04.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_05.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_06.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_07.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_08.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_09.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_10.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_11.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_12.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001J/files/pca_trajectory_13.bin", "length": 213840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0, "frames": 20, "atoms": 891}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001J/files/structure.pdb", "length": 355544, "contentType": "chemical/x-pdb", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001J/files/trajectory.xtc", "length": 83579900, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_00.jpg", "length": 21062, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_01.jpg", "length": 20859, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_02.jpg", "length": 21180, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_03.jpg", "length": 19534, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_04.jpg", "length": 21600, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_05.jpg", "length": 20521, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_06.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_07.jpg", "length": 19796, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_08.jpg", "length": 21065, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_09.jpg", "length": 21042, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_10.jpg", "length": 20840, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_11.jpg", "length": 21054, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_12.jpg", "length": 21417, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_13.jpg", "length": 21102, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_14.jpg", "length": 19387, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_15.jpg", "length": 20604, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_16.jpg", "length": 19509, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_17.jpg", "length": 20238, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_18.jpg", "length": 20186, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_19.jpg", "length": 20587, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_20.jpg", "length": 19443, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_21.jpg", "length": 21509, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A001J/files/clusters_00_screenshot_22.jpg", "length": 21278, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_00.jpg", "length": 21913, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_01.jpg", "length": 21451, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_02.jpg", "length": 21799, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_03.jpg", "length": 21540, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_04.jpg", "length": 22377, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_05.jpg", "length": 22330, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_06.jpg", "length": 22078, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_07.jpg", "length": 21971, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_08.jpg", "length": 21975, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_09.jpg", "length": 22348, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_10.jpg", "length": 22180, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_11.jpg", "length": 20504, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_12.jpg", "length": 20664, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_13.jpg", "length": 22105, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_14.jpg", "length": 21919, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_15.jpg", "length": 21989, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_16.jpg", "length": 21869, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_17.jpg", "length": 22611, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_18.jpg", "length": 22076, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_19.jpg", "length": 20623, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_20.jpg", "length": 20446, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_01_screenshot_21.jpg", "downloadUrl": "/projects/A001J/files/clusters_01_screenshot_21.jpg", "length": 21637, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_00.jpg", "length": 21018, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_01.jpg", "length": 21115, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_02.jpg", "length": 21538, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_03.jpg", "length": 21119, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_04.jpg", "length": 21432, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_05.jpg", "length": 21305, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_06.jpg", "length": 20031, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_07.jpg", "length": 21721, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_08.jpg", "length": 21260, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_09.jpg", "length": 21508, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_10.jpg", "length": 20104, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_11.jpg", "length": 21420, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_12.jpg", "length": 20635, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_13.jpg", "length": 20104, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_14.jpg", "length": 20119, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_15.jpg", "length": 19786, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_16.jpg", "length": 19524, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_17.jpg", "length": 19619, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_18.jpg", "length": 21190, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_02_screenshot_19.jpg", "length": 19768, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_00.jpg", "length": 22532, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_01.jpg", "length": 22431, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_02.jpg", "length": 22131, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_03.jpg", "length": 22070, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_04.jpg", "length": 22615, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_05.jpg", "length": 22300, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_06.jpg", "length": 22916, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_07.jpg", "length": 22023, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_08.jpg", "length": 22679, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_09.jpg", "length": 22269, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_10.jpg", "length": 21333, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_11.jpg", "length": 22515, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_12.jpg", "length": 22738, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_13.jpg", "length": 20461, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_14.jpg", "length": 22442, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_15.jpg", "length": 23014, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_16.jpg", "length": 20366, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_17.jpg", "length": 22165, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_18.jpg", "length": 20989, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_03_screenshot_19.jpg", "length": 22661, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_00.jpg", "length": 22518, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_01.jpg", "length": 22371, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_02.jpg", "length": 22649, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_03.jpg", "length": 22853, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_04.jpg", "length": 22679, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_05.jpg", "length": 22564, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_06.jpg", "length": 22645, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_07.jpg", "length": 22395, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_08.jpg", "length": 21989, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_09.jpg", "length": 22782, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_10.jpg", "length": 22638, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_11.jpg", "length": 23232, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_12.jpg", "length": 21844, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_13.jpg", "length": 21932, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_14.jpg", "length": 22057, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_15.jpg", "length": 22707, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_16.jpg", "length": 22494, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_17.jpg", "length": 21603, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_18.jpg", "length": 22738, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A001J/files/clusters_04_screenshot_19.jpg", "length": 22850, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_00.jpg", "length": 20551, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_01.jpg", "length": 20592, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_02.jpg", "length": 20175, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_03.jpg", "length": 19343, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_04.jpg", "length": 19930, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_05.jpg", "length": 20846, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_06.jpg", "length": 20386, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_07.jpg", "length": 20639, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_08.jpg", "length": 20728, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_09.jpg", "length": 20669, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_10.jpg", "length": 20691, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_11.jpg", "length": 20514, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_12.jpg", "length": 19311, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_13.jpg", "length": 19742, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_14.jpg", "length": 19107, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_15.jpg", "length": 20682, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_16.jpg", "length": 19210, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_17.jpg", "length": 20426, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001J/files/clusters_05_screenshot_18.jpg", "length": 19614, "contentType": "application/octet-stream", "metadata": {"project": "683f54f9f678dbfea25cb161", "md": 0}}]} diff --git a/data/files/A001K/project.json b/data/files/A001K/project.json new file mode 100644 index 0000000000000000000000000000000000000000..dcad8545d8b38ec0c2e5a6f05d8fb11ed6d1467f --- /dev/null +++ b/data/files/A001K/project.json @@ -0,0 +1,197 @@ +{ + "accession": "A001K", + "published": true, + "metadata": { + "NAME": "Dynarepo 1MXE", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1MXE" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P62152", + "Q63450" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS", + "IKKNFAKSKWKQAFNATAVVRHMRK" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Calmodulin", + "EF-hand 1", + "EF-hand 2", + "EF-hand 3", + "EF-hand 4", + "Not N6-methylated", + "Calcium/calmodulin-dependent protein kinase type 1", + "Autoinhibitory domain", + "Calmodulin-binding", + "Nuclear export signal" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 2640, + "SYSTRES": 169, + "PROTATS": 2640, + "PROTRES": 169, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 7.43732, + "BOXSIZEY": 7.43732, + "BOXSIZEZ": 5.23418, + "mdName": "replica 1", + "mdAtoms": 2640, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "pocket_01.pdb", + "pocket_02.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 1, + "internalId": "683f5609ececf955b91e2fb8", + "creationDate": "2025-06-03T20:07:37.000Z", + "identifier": "A001K" +} \ No newline at end of file diff --git a/data/files/A001K/records.jsonl b/data/files/A001K/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..947eaa04d1174adbc9a5f78e1e12f47be72a5e30 --- /dev/null +++ b/data/files/A001K/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001K", "accession": "A001K", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1MXE", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1MXE"], "FORCED_REFERENCES": null, "REFERENCES": ["P62152", "Q63450"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS", "IKKNFAKSKWKQAFNATAVVRHMRK"], "NUCLSEQ": [], "DOMAINS": ["Calmodulin", "EF-hand 1", "EF-hand 2", "EF-hand 3", "EF-hand 4", "Not N6-methylated", "Calcium/calmodulin-dependent protein kinase type 1", "Autoinhibitory domain", "Calmodulin-binding", "Nuclear export signal"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 2640, "SYSTRES": 169, "PROTATS": 2640, "PROTRES": 169, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 7.43732, "BOXSIZEY": 7.43732, "BOXSIZEZ": 5.23418, "mdName": "replica 1", "mdAtoms": 2640, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001K/files/topology.tpr", "length": 982744, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001K/files/screenshot.jpg", "length": 22491, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001K/files/trajectory.bin", "length": 158431680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 5001, "atoms": 2640}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_01.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_02.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_03.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_04.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_05.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_06.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_07.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_08.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_09.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_10.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_11.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_12.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_13.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_14.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_15.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_16.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001K/files/structure.pdb", "length": 213875, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001K/files/trajectory.xtc", "length": 50450436, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_00.jpg", "length": 22211, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_01.jpg", "length": 21831, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_02.jpg", "length": 22153, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_03.jpg", "length": 21839, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_04.jpg", "length": 22216, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_05.jpg", "length": 21973, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_06.jpg", "length": 21657, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_07.jpg", "length": 22006, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_08.jpg", "length": 22241, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_09.jpg", "length": 22107, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_10.jpg", "length": 21350, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_11.jpg", "length": 21062, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_12.jpg", "length": 21599, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_13.jpg", "length": 22197, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_14.jpg", "length": 21992, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_15.jpg", "length": 20605, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_16.jpg", "length": 21667, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_17.jpg", "length": 21415, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_18.jpg", "length": 21783, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_19.jpg", "length": 21845, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_00.jpg", "length": 21837, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_01.jpg", "length": 21926, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_02.jpg", "length": 21703, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_03.jpg", "length": 21169, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_04.jpg", "length": 21251, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_05.jpg", "length": 20937, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_06.jpg", "length": 21855, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_07.jpg", "length": 21564, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_08.jpg", "length": 21049, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_09.jpg", "length": 21399, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_10.jpg", "length": 21159, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_11.jpg", "length": 21193, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_12.jpg", "length": 21261, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_13.jpg", "length": 20939, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_14.jpg", "length": 21224, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_15.jpg", "length": 20939, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_16.jpg", "length": 21672, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_17.jpg", "length": 21664, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_18.jpg", "length": 21709, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001K/files/pocket_01.pdb", "length": 8308, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001K/files/pocket_02.pdb", "length": 4154, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}]} +{"project_identifier": "A001K", "accession": "A001K", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1MXE", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1MXE"], "FORCED_REFERENCES": null, "REFERENCES": ["P62152", "Q63450"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS", "IKKNFAKSKWKQAFNATAVVRHMRK"], "NUCLSEQ": [], "DOMAINS": ["Calmodulin", "EF-hand 1", "EF-hand 2", "EF-hand 3", "EF-hand 4", "Not N6-methylated", "Calcium/calmodulin-dependent protein kinase type 1", "Autoinhibitory domain", "Calmodulin-binding", "Nuclear export signal"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 2640, "SYSTRES": 169, "PROTATS": 2640, "PROTRES": 169, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 7.43732, "BOXSIZEY": 7.43732, "BOXSIZEZ": 5.23418, "mdName": "replica 1", "mdAtoms": 2640, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001K/files/topology.tpr", "length": 982744, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001K/files/screenshot.jpg", "length": 22491, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001K/files/trajectory.bin", "length": 158431680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 5001, "atoms": 2640}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_01.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_02.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_03.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_04.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_05.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_06.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_07.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_08.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_09.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_10.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_11.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_12.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_13.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_14.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_15.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_16.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001K/files/structure.pdb", "length": 213875, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001K/files/trajectory.xtc", "length": 50450436, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_00.jpg", "length": 22211, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_01.jpg", "length": 21831, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_02.jpg", "length": 22153, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_03.jpg", "length": 21839, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_04.jpg", "length": 22216, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_05.jpg", "length": 21973, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_06.jpg", "length": 21657, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_07.jpg", "length": 22006, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_08.jpg", "length": 22241, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_09.jpg", "length": 22107, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_10.jpg", "length": 21350, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_11.jpg", "length": 21062, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_12.jpg", "length": 21599, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_13.jpg", "length": 22197, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_14.jpg", "length": 21992, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_15.jpg", "length": 20605, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_16.jpg", "length": 21667, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_17.jpg", "length": 21415, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_18.jpg", "length": 21783, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_19.jpg", "length": 21845, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_00.jpg", "length": 21837, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_01.jpg", "length": 21926, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_02.jpg", "length": 21703, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_03.jpg", "length": 21169, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_04.jpg", "length": 21251, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_05.jpg", "length": 20937, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_06.jpg", "length": 21855, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_07.jpg", "length": 21564, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_08.jpg", "length": 21049, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_09.jpg", "length": 21399, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_10.jpg", "length": 21159, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_11.jpg", "length": 21193, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_12.jpg", "length": 21261, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_13.jpg", "length": 20939, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_14.jpg", "length": 21224, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_15.jpg", "length": 20939, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_16.jpg", "length": 21672, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_17.jpg", "length": 21664, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_18.jpg", "length": 21709, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001K/files/pocket_01.pdb", "length": 8308, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001K/files/pocket_02.pdb", "length": 4154, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}]} +{"project_identifier": "A001K", "accession": "A001K", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1MXE", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1MXE"], "FORCED_REFERENCES": null, "REFERENCES": ["P62152", "Q63450"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS", "IKKNFAKSKWKQAFNATAVVRHMRK"], "NUCLSEQ": [], "DOMAINS": ["Calmodulin", "EF-hand 1", "EF-hand 2", "EF-hand 3", "EF-hand 4", "Not N6-methylated", "Calcium/calmodulin-dependent protein kinase type 1", "Autoinhibitory domain", "Calmodulin-binding", "Nuclear export signal"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 2640, "SYSTRES": 169, "PROTATS": 2640, "PROTRES": 169, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 7.43732, "BOXSIZEY": 7.43732, "BOXSIZEZ": 5.23418, "mdName": "replica 1", "mdAtoms": 2640, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001K/files/topology.tpr", "length": 982744, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001K/files/screenshot.jpg", "length": 22491, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001K/files/trajectory.bin", "length": 158431680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 5001, "atoms": 2640}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_01.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_02.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_03.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_04.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_05.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_06.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_07.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_08.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_09.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_10.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_11.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_12.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_13.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_14.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_15.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001K/files/pca_trajectory_16.bin", "length": 121680, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0, "frames": 20, "atoms": 507}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001K/files/structure.pdb", "length": 213875, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001K/files/trajectory.xtc", "length": 50450436, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_00.jpg", "length": 22211, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_01.jpg", "length": 21831, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_02.jpg", "length": 22153, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_03.jpg", "length": 21839, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_04.jpg", "length": 22216, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_05.jpg", "length": 21973, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_06.jpg", "length": 21657, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_07.jpg", "length": 22006, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_08.jpg", "length": 22241, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_09.jpg", "length": 22107, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_10.jpg", "length": 21350, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_11.jpg", "length": 21062, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_12.jpg", "length": 21599, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_13.jpg", "length": 22197, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_14.jpg", "length": 21992, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_15.jpg", "length": 20605, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_16.jpg", "length": 21667, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_17.jpg", "length": 21415, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_18.jpg", "length": 21783, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001K/files/clusters_00_screenshot_19.jpg", "length": 21845, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_00.jpg", "length": 21837, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_01.jpg", "length": 21926, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_02.jpg", "length": 21703, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_03.jpg", "length": 21169, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_04.jpg", "length": 21251, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_05.jpg", "length": 20937, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_06.jpg", "length": 21855, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_07.jpg", "length": 21564, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_08.jpg", "length": 21049, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_09.jpg", "length": 21399, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_10.jpg", "length": 21159, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_11.jpg", "length": 21193, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_12.jpg", "length": 21261, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_13.jpg", "length": 20939, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_14.jpg", "length": 21224, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_15.jpg", "length": 20939, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_16.jpg", "length": 21672, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_17.jpg", "length": 21664, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001K/files/clusters_01_screenshot_18.jpg", "length": 21709, "contentType": "application/octet-stream", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001K/files/pocket_01.pdb", "length": 8308, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001K/files/pocket_02.pdb", "length": 4154, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5609ececf955b91e2fb8", "md": 0}}]} diff --git a/data/files/A001L/project.json b/data/files/A001L/project.json new file mode 100644 index 0000000000000000000000000000000000000000..70dd4638a17c33b14dce3e2bb5f531afa1b33677 --- /dev/null +++ b/data/files/A001L/project.json @@ -0,0 +1,199 @@ +{ + "accession": "A001L", + "published": true, + "metadata": { + "NAME": "Dynarepo 1OP9", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1OP9" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P01764", + "P61626" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "QVQLQESGGGSVQAGGSLRLSCSASGYTYISGWFRQAPGKEREGVAAIRSSDGTTYYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTAMYYCAATEVAGWPLDIGIYDYWGQGTEVTVSS", + "KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Immunoglobulin heavy variable 3-23", + "Ig-like", + "Framework-1", + "Complementarity-determining-1", + "Framework-2", + "Complementarity-determining-2", + "Framework-3", + "Complementarity-determining-3", + "Lysozyme C", + "C-type lysozyme" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 3801, + "SYSTRES": 251, + "PROTATS": 3801, + "PROTRES": 251, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 9.53664, + "BOXSIZEY": 9.53664, + "BOXSIZEZ": 6.77299, + "mdName": "replica 1", + "mdAtoms": 3801, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f573e7765e54ebf3005ea", + "creationDate": "2025-06-03T20:12:46.000Z", + "identifier": "A001L" +} \ No newline at end of file diff --git a/data/files/A001L/records.jsonl b/data/files/A001L/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..cef5c255d1ebceafa89f1d6e11796e44f2768d7f --- /dev/null +++ b/data/files/A001L/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001L", "accession": "A001L", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1OP9", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1OP9"], "FORCED_REFERENCES": null, "REFERENCES": ["P01764", "P61626"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["QVQLQESGGGSVQAGGSLRLSCSASGYTYISGWFRQAPGKEREGVAAIRSSDGTTYYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTAMYYCAATEVAGWPLDIGIYDYWGQGTEVTVSS", "KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV"], "NUCLSEQ": [], "DOMAINS": ["Immunoglobulin heavy variable 3-23", "Ig-like", "Framework-1", "Complementarity-determining-1", "Framework-2", "Complementarity-determining-2", "Framework-3", "Complementarity-determining-3", "Lysozyme C", "C-type lysozyme"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3801, "SYSTRES": 251, "PROTATS": 3801, "PROTRES": 251, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.53664, "BOXSIZEY": 9.53664, "BOXSIZEZ": 6.77299, "mdName": "replica 1", "mdAtoms": 3801, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001L/files/topology.tpr", "length": 1338428, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001L/files/screenshot.jpg", "length": 21195, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001L/files/trajectory.bin", "length": 228105612, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 5001, "atoms": 3801}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_01.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_02.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_03.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_04.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_05.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_06.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_07.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_08.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_09.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_10.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_11.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_12.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_13.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_14.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_15.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_16.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001L/files/structure.pdb", "length": 307916, "contentType": "chemical/x-pdb", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001L/files/trajectory.xtc", "length": 72274880, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_00.jpg", "length": 20796, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_01.jpg", "length": 20747, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_02.jpg", "length": 21007, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_03.jpg", "length": 20637, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_04.jpg", "length": 21107, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_05.jpg", "length": 21307, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_06.jpg", "length": 20676, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_07.jpg", "length": 20889, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_08.jpg", "length": 20928, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_09.jpg", "length": 21276, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_10.jpg", "length": 21033, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_11.jpg", "length": 20537, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_12.jpg", "length": 20840, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_13.jpg", "length": 20308, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_14.jpg", "length": 21122, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_15.jpg", "length": 21209, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_16.jpg", "length": 20993, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_17.jpg", "length": 21279, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_18.jpg", "length": 20502, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_19.jpg", "length": 20851, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_20.jpg", "length": 20801, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_00.jpg", "length": 21061, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_01.jpg", "length": 20565, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_02.jpg", "length": 21011, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_03.jpg", "length": 20814, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_04.jpg", "length": 20908, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_05.jpg", "length": 21078, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_06.jpg", "length": 21034, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_07.jpg", "length": 20726, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_08.jpg", "length": 21116, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_09.jpg", "length": 20821, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_10.jpg", "length": 21276, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_11.jpg", "length": 20682, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_12.jpg", "length": 21061, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_13.jpg", "length": 21086, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_14.jpg", "length": 21226, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_15.jpg", "length": 20610, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_16.jpg", "length": 20780, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_17.jpg", "length": 20615, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_18.jpg", "length": 20803, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_19.jpg", "length": 20874, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001L/files/pocket_01.pdb", "length": 17018, "contentType": "chemical/x-pdb", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001L/files/pocket_02.pdb", "length": 4087, "contentType": "chemical/x-pdb", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}]} +{"project_identifier": "A001L", "accession": "A001L", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1OP9", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1OP9"], "FORCED_REFERENCES": null, "REFERENCES": ["P01764", "P61626"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["QVQLQESGGGSVQAGGSLRLSCSASGYTYISGWFRQAPGKEREGVAAIRSSDGTTYYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTAMYYCAATEVAGWPLDIGIYDYWGQGTEVTVSS", "KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV"], "NUCLSEQ": [], "DOMAINS": ["Immunoglobulin heavy variable 3-23", "Ig-like", "Framework-1", "Complementarity-determining-1", "Framework-2", "Complementarity-determining-2", "Framework-3", "Complementarity-determining-3", "Lysozyme C", "C-type lysozyme"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3801, "SYSTRES": 251, "PROTATS": 3801, "PROTRES": 251, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.53664, "BOXSIZEY": 9.53664, "BOXSIZEZ": 6.77299, "mdName": "replica 1", "mdAtoms": 3801, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001L/files/topology.tpr", "length": 1338428, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001L/files/screenshot.jpg", "length": 21195, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001L/files/trajectory.bin", "length": 228105612, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 5001, "atoms": 3801}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_01.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_02.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_03.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_04.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_05.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_06.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_07.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_08.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_09.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_10.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_11.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_12.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_13.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_14.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_15.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_16.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001L/files/structure.pdb", "length": 307916, "contentType": "chemical/x-pdb", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001L/files/trajectory.xtc", "length": 72274880, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_00.jpg", "length": 20796, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_01.jpg", "length": 20747, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_02.jpg", "length": 21007, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_03.jpg", "length": 20637, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_04.jpg", "length": 21107, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_05.jpg", "length": 21307, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_06.jpg", "length": 20676, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_07.jpg", "length": 20889, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_08.jpg", "length": 20928, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_09.jpg", "length": 21276, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_10.jpg", "length": 21033, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_11.jpg", "length": 20537, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_12.jpg", "length": 20840, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_13.jpg", "length": 20308, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_14.jpg", "length": 21122, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_15.jpg", "length": 21209, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_16.jpg", "length": 20993, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_17.jpg", "length": 21279, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_18.jpg", "length": 20502, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_19.jpg", "length": 20851, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_20.jpg", "length": 20801, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_00.jpg", "length": 21061, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_01.jpg", "length": 20565, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_02.jpg", "length": 21011, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_03.jpg", "length": 20814, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_04.jpg", "length": 20908, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_05.jpg", "length": 21078, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_06.jpg", "length": 21034, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_07.jpg", "length": 20726, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_08.jpg", "length": 21116, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_09.jpg", "length": 20821, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_10.jpg", "length": 21276, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_11.jpg", "length": 20682, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_12.jpg", "length": 21061, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_13.jpg", "length": 21086, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_14.jpg", "length": 21226, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_15.jpg", "length": 20610, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_16.jpg", "length": 20780, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_17.jpg", "length": 20615, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_18.jpg", "length": 20803, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_19.jpg", "length": 20874, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001L/files/pocket_01.pdb", "length": 17018, "contentType": "chemical/x-pdb", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001L/files/pocket_02.pdb", "length": 4087, "contentType": "chemical/x-pdb", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}]} +{"project_identifier": "A001L", "accession": "A001L", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1OP9", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1OP9"], "FORCED_REFERENCES": null, "REFERENCES": ["P01764", "P61626"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["QVQLQESGGGSVQAGGSLRLSCSASGYTYISGWFRQAPGKEREGVAAIRSSDGTTYYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTAMYYCAATEVAGWPLDIGIYDYWGQGTEVTVSS", "KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV"], "NUCLSEQ": [], "DOMAINS": ["Immunoglobulin heavy variable 3-23", "Ig-like", "Framework-1", "Complementarity-determining-1", "Framework-2", "Complementarity-determining-2", "Framework-3", "Complementarity-determining-3", "Lysozyme C", "C-type lysozyme"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3801, "SYSTRES": 251, "PROTATS": 3801, "PROTRES": 251, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.53664, "BOXSIZEY": 9.53664, "BOXSIZEZ": 6.77299, "mdName": "replica 1", "mdAtoms": 3801, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001L/files/topology.tpr", "length": 1338428, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001L/files/screenshot.jpg", "length": 21195, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001L/files/trajectory.bin", "length": 228105612, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 5001, "atoms": 3801}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_01.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_02.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_03.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_04.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_05.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_06.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_07.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_08.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_09.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_10.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_11.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_12.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_13.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_14.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_15.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001L/files/pca_trajectory_16.bin", "length": 180720, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0, "frames": 20, "atoms": 753}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001L/files/structure.pdb", "length": 307916, "contentType": "chemical/x-pdb", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001L/files/trajectory.xtc", "length": 72274880, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_00.jpg", "length": 20796, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_01.jpg", "length": 20747, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_02.jpg", "length": 21007, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_03.jpg", "length": 20637, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_04.jpg", "length": 21107, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_05.jpg", "length": 21307, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_06.jpg", "length": 20676, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_07.jpg", "length": 20889, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_08.jpg", "length": 20928, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_09.jpg", "length": 21276, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_10.jpg", "length": 21033, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_11.jpg", "length": 20537, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_12.jpg", "length": 20840, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_13.jpg", "length": 20308, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_14.jpg", "length": 21122, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_15.jpg", "length": 21209, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_16.jpg", "length": 20993, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_17.jpg", "length": 21279, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_18.jpg", "length": 20502, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_19.jpg", "length": 20851, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001L/files/clusters_00_screenshot_20.jpg", "length": 20801, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_00.jpg", "length": 21061, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_01.jpg", "length": 20565, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_02.jpg", "length": 21011, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_03.jpg", "length": 20814, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_04.jpg", "length": 20908, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_05.jpg", "length": 21078, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_06.jpg", "length": 21034, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_07.jpg", "length": 20726, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_08.jpg", "length": 21116, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_09.jpg", "length": 20821, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_10.jpg", "length": 21276, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_11.jpg", "length": 20682, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_12.jpg", "length": 21061, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_13.jpg", "length": 21086, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_14.jpg", "length": 21226, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_15.jpg", "length": 20610, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_16.jpg", "length": 20780, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_17.jpg", "length": 20615, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_18.jpg", "length": 20803, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001L/files/clusters_01_screenshot_19.jpg", "length": 20874, "contentType": "application/octet-stream", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001L/files/pocket_01.pdb", "length": 17018, "contentType": "chemical/x-pdb", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001L/files/pocket_02.pdb", "length": 4087, "contentType": "chemical/x-pdb", "metadata": {"project": "683f573e7765e54ebf3005ea", "md": 0}}]} diff --git a/data/files/A001M/project.json b/data/files/A001M/project.json new file mode 100644 index 0000000000000000000000000000000000000000..4d492d4b10c766826e26d86adfa5259c2937d453 --- /dev/null +++ b/data/files/A001M/project.json @@ -0,0 +1,1389 @@ +{ + "accession": "A001M", + "published": true, + "metadata": { + "NAME": "Dynarepo 1OQE", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1OQE" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "Q9Y275", + "Q96RJ3" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "PTPCVPAECFDLLVRHCVACGLLR", + "PTPCVPAECFDLLVRHCVACGLLRTPRPKPA", + "VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Tumor necrosis factor ligand superfamily member 13b, membrane form", + "Tumor necrosis factor ligand superfamily member 13b, soluble form", + "THD", + "Tumor necrosis factor receptor superfamily member 13C", + "Essential for TNFSF13B/TALL1/BAFF/BLyS binding", + "Disordered" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 26590, + "SYSTRES": 1681, + "PROTATS": 26590, + "PROTRES": 1681, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "chain A-chain C interaction", + "agent_1": "chain A", + "agent_2": "chain C", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain A-chain G interaction", + "agent_1": "chain A", + "agent_2": "chain G", + "selection_1": "chain A", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "chain A-chain K interaction", + "agent_1": "chain A", + "agent_2": "chain K", + "selection_1": "chain A", + "selection_2": "chain E", + "type": "protein-protein" + }, + { + "name": "chain A-chain M interaction", + "agent_1": "chain A", + "agent_2": "chain M", + "selection_1": "chain A", + "selection_2": "chain F", + "type": "protein-protein" + }, + { + "name": "chain A-chain P interaction", + "agent_1": "chain A", + "agent_2": "chain P", + "selection_1": "chain A", + "selection_2": "chain G", + "type": "protein-protein" + }, + { + "name": "chain B-chain C interaction", + "agent_1": "chain B", + "agent_2": "chain C", + "selection_1": "chain A", + "selection_2": "chain H", + "type": "protein-protein" + }, + { + "name": "chain B-chain D interaction", + "agent_1": "chain B", + "agent_2": "chain D", + "selection_1": "chain A", + "selection_2": "chain I", + "type": "protein-protein" + }, + { + "name": "chain B-chain F interaction", + "agent_1": "chain B", + "agent_2": "chain F", + "selection_1": "chain A", + "selection_2": "chain J", + "type": "protein-protein" + }, + { + "name": "chain B-chain K interaction", + "agent_1": "chain B", + "agent_2": "chain K", + "selection_1": "chain A", + "selection_2": "chain K", + "type": "protein-protein" + }, + { + "name": "chain B-chain L interaction", + "agent_1": "chain B", + "agent_2": "chain L", + "selection_1": "chain A", + "selection_2": "chain L", + "type": "protein-protein" + }, + { + "name": "chain B-chain O interaction", + "agent_1": "chain B", + "agent_2": "chain O", + "selection_1": "chain A", + "selection_2": "chain M", + "type": "protein-protein" + }, + { + "name": "chain C-chain F interaction", + "agent_1": "chain C", + "agent_2": "chain F", + "selection_1": "chain A", + "selection_2": "chain N", + "type": "protein-protein" + }, + { + "name": "chain C-chain G interaction", + "agent_1": "chain C", + "agent_2": "chain G", + "selection_1": "chain A", + "selection_2": "chain O", + "type": "protein-protein" + }, + { + "name": "chain C-chain H interaction", + "agent_1": "chain C", + "agent_2": "chain H", + "selection_1": "chain A", + "selection_2": "chain P", + "type": "protein-protein" + }, + { + "name": "chain C-chain L interaction", + "agent_1": "chain C", + "agent_2": "chain L", + "selection_1": "chain A", + "selection_2": "chain Q", + "type": "protein-protein" + }, + { + "name": "chain C-chain M interaction", + "agent_1": "chain C", + "agent_2": "chain M", + "selection_1": "chain A", + "selection_2": "chain R", + "type": "protein-protein" + }, + { + "name": "chain C-chain P interaction", + "agent_1": "chain C", + "agent_2": "chain P", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain D-chain E interaction", + "agent_1": "chain D", + "agent_2": "chain E", + "selection_1": "chain B", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "chain D-chain F interaction", + "agent_1": "chain D", + "agent_2": "chain F", + "selection_1": "chain B", + "selection_2": "chain E", + "type": "protein-protein" + }, + { + "name": "chain D-chain O interaction", + "agent_1": "chain D", + "agent_2": "chain O", + "selection_1": "chain B", + "selection_2": "chain F", + "type": "protein-protein" + }, + { + "name": "chain E-chain F interaction", + "agent_1": "chain E", + "agent_2": "chain F", + "selection_1": "chain B", + "selection_2": "chain G", + "type": "protein-protein" + }, + { + "name": "chain E-chain J interaction", + "agent_1": "chain E", + "agent_2": "chain J", + "selection_1": "chain B", + "selection_2": "chain H", + "type": "protein-protein" + }, + { + "name": "chain E-chain N interaction", + "agent_1": "chain E", + "agent_2": "chain N", + "selection_1": "chain B", + "selection_2": "chain I", + "type": "protein-protein" + }, + { + "name": "chain E-chain R interaction", + "agent_1": "chain E", + "agent_2": "chain R", + "selection_1": "chain B", + "selection_2": "chain J", + "type": "protein-protein" + }, + { + "name": "chain F-chain J interaction", + "agent_1": "chain F", + "agent_2": "chain J", + "selection_1": "chain B", + "selection_2": "chain K", + "type": "protein-protein" + }, + { + "name": "chain F-chain L interaction", + "agent_1": "chain F", + "agent_2": "chain L", + "selection_1": "chain B", + "selection_2": "chain L", + "type": "protein-protein" + }, + { + "name": "chain F-chain N interaction", + "agent_1": "chain F", + "agent_2": "chain N", + "selection_1": "chain B", + "selection_2": "chain M", + "type": "protein-protein" + }, + { + "name": "chain F-chain O interaction", + "agent_1": "chain F", + "agent_2": "chain O", + "selection_1": "chain B", + "selection_2": "chain N", + "type": "protein-protein" + }, + { + "name": "chain G-chain H interaction", + "agent_1": "chain G", + "agent_2": "chain H", + "selection_1": "chain B", + "selection_2": "chain O", + "type": "protein-protein" + }, + { + "name": "chain G-chain I interaction", + "agent_1": "chain G", + "agent_2": "chain I", + "selection_1": "chain B", + "selection_2": "chain P", + "type": "protein-protein" + }, + { + "name": "chain G-chain M interaction", + "agent_1": "chain G", + "agent_2": "chain M", + "selection_1": "chain B", + "selection_2": "chain Q", + "type": "protein-protein" + }, + { + "name": "chain G-chain P interaction", + "agent_1": "chain G", + "agent_2": "chain P", + "selection_1": "chain B", + "selection_2": "chain R", + "type": "protein-protein" + }, + { + "name": "chain G-chain Q interaction", + "agent_1": "chain G", + "agent_2": "chain Q", + "selection_1": "chain C", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "chain H-chain I interaction", + "agent_1": "chain H", + "agent_2": "chain I", + "selection_1": "chain C", + "selection_2": "chain E", + "type": "protein-protein" + }, + { + "name": "chain H-chain P interaction", + "agent_1": "chain H", + "agent_2": "chain P", + "selection_1": "chain C", + "selection_2": "chain F", + "type": "protein-protein" + }, + { + "name": "chain I-chain Q interaction", + "agent_1": "chain I", + "agent_2": "chain Q", + "selection_1": "chain C", + "selection_2": "chain G", + "type": "protein-protein" + }, + { + "name": "chain J-chain N interaction", + "agent_1": "chain J", + "agent_2": "chain N", + "selection_1": "chain C", + "selection_2": "chain H", + "type": "protein-protein" + }, + { + "name": "chain J-chain R interaction", + "agent_1": "chain J", + "agent_2": "chain R", + "selection_1": "chain C", + "selection_2": "chain I", + "type": "protein-protein" + }, + { + "name": "chain L-chain O interaction", + "agent_1": "chain L", + "agent_2": "chain O", + "selection_1": "chain C", + "selection_2": "chain J", + "type": "protein-protein" + }, + { + "name": "chain M-chain P interaction", + "agent_1": "chain M", + "agent_2": "chain P", + "selection_1": "chain C", + "selection_2": "chain K", + "type": "protein-protein" + }, + { + "name": "chain N-chain R interaction", + "agent_1": "chain N", + "agent_2": "chain R", + "selection_1": "chain C", + "selection_2": "chain L", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 17.0815, + "BOXSIZEY": 17.0815, + "BOXSIZEZ": 12.086, + "mdName": "replica 1", + "mdAtoms": 26590, + "mdFrames": 5001 + }, + "mds": [ + "replica 1" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "pca_trajectory_17.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_04_screenshot_00.jpg", + "clusters_04_screenshot_01.jpg", + "clusters_04_screenshot_02.jpg", + "clusters_04_screenshot_03.jpg", + "clusters_04_screenshot_04.jpg", + "clusters_04_screenshot_05.jpg", + "clusters_04_screenshot_06.jpg", + "clusters_04_screenshot_07.jpg", + "clusters_04_screenshot_08.jpg", + "clusters_04_screenshot_09.jpg", + "clusters_04_screenshot_10.jpg", + "clusters_04_screenshot_11.jpg", + "clusters_04_screenshot_12.jpg", + "clusters_04_screenshot_13.jpg", + "clusters_04_screenshot_14.jpg", + "clusters_04_screenshot_15.jpg", + "clusters_04_screenshot_16.jpg", + "clusters_04_screenshot_17.jpg", + "clusters_04_screenshot_18.jpg", + "clusters_04_screenshot_19.jpg", + "clusters_04_screenshot_20.jpg", + "clusters_04_screenshot_21.jpg", + "clusters_05_screenshot_00.jpg", + "clusters_05_screenshot_01.jpg", + "clusters_05_screenshot_02.jpg", + "clusters_05_screenshot_03.jpg", + "clusters_05_screenshot_04.jpg", + "clusters_05_screenshot_05.jpg", + "clusters_05_screenshot_06.jpg", + "clusters_05_screenshot_07.jpg", + "clusters_05_screenshot_08.jpg", + "clusters_05_screenshot_09.jpg", + "clusters_05_screenshot_10.jpg", + "clusters_05_screenshot_11.jpg", + "clusters_05_screenshot_12.jpg", + "clusters_05_screenshot_13.jpg", + "clusters_05_screenshot_14.jpg", + "clusters_05_screenshot_15.jpg", + "clusters_05_screenshot_16.jpg", + "clusters_05_screenshot_17.jpg", + "clusters_05_screenshot_18.jpg", + "clusters_06_screenshot_00.jpg", + "clusters_06_screenshot_01.jpg", + "clusters_06_screenshot_02.jpg", + "clusters_06_screenshot_03.jpg", + "clusters_06_screenshot_04.jpg", + "clusters_06_screenshot_05.jpg", + "clusters_06_screenshot_06.jpg", + "clusters_06_screenshot_07.jpg", + "clusters_06_screenshot_08.jpg", + "clusters_06_screenshot_09.jpg", + "clusters_06_screenshot_10.jpg", + "clusters_06_screenshot_11.jpg", + "clusters_06_screenshot_12.jpg", + "clusters_06_screenshot_13.jpg", + "clusters_06_screenshot_14.jpg", + "clusters_06_screenshot_15.jpg", + "clusters_06_screenshot_16.jpg", + "clusters_06_screenshot_17.jpg", + "clusters_06_screenshot_18.jpg", + "clusters_06_screenshot_19.jpg", + "clusters_06_screenshot_20.jpg", + "clusters_07_screenshot_00.jpg", + "clusters_07_screenshot_01.jpg", + "clusters_07_screenshot_02.jpg", + "clusters_07_screenshot_03.jpg", + "clusters_07_screenshot_04.jpg", + "clusters_07_screenshot_05.jpg", + "clusters_07_screenshot_06.jpg", + "clusters_07_screenshot_07.jpg", + "clusters_07_screenshot_08.jpg", + "clusters_07_screenshot_09.jpg", + "clusters_07_screenshot_10.jpg", + "clusters_07_screenshot_11.jpg", + "clusters_07_screenshot_12.jpg", + "clusters_07_screenshot_13.jpg", + "clusters_07_screenshot_14.jpg", + "clusters_07_screenshot_15.jpg", + "clusters_07_screenshot_16.jpg", + "clusters_07_screenshot_17.jpg", + "clusters_07_screenshot_18.jpg", + "clusters_08_screenshot_00.jpg", + "clusters_08_screenshot_01.jpg", + "clusters_08_screenshot_02.jpg", + "clusters_08_screenshot_03.jpg", + "clusters_08_screenshot_04.jpg", + "clusters_08_screenshot_05.jpg", + "clusters_08_screenshot_06.jpg", + "clusters_08_screenshot_07.jpg", + "clusters_08_screenshot_08.jpg", + "clusters_08_screenshot_09.jpg", + "clusters_08_screenshot_10.jpg", + "clusters_08_screenshot_11.jpg", + "clusters_08_screenshot_12.jpg", + "clusters_08_screenshot_13.jpg", + "clusters_08_screenshot_14.jpg", + "clusters_08_screenshot_15.jpg", + "clusters_08_screenshot_16.jpg", + "clusters_08_screenshot_17.jpg", + "clusters_08_screenshot_18.jpg", + "clusters_09_screenshot_00.jpg", + "clusters_09_screenshot_01.jpg", + "clusters_09_screenshot_02.jpg", + "clusters_09_screenshot_03.jpg", + "clusters_09_screenshot_04.jpg", + "clusters_09_screenshot_05.jpg", + "clusters_09_screenshot_06.jpg", + "clusters_09_screenshot_07.jpg", + "clusters_09_screenshot_08.jpg", + "clusters_09_screenshot_09.jpg", + "clusters_09_screenshot_10.jpg", + "clusters_09_screenshot_11.jpg", + "clusters_09_screenshot_12.jpg", + "clusters_09_screenshot_13.jpg", + "clusters_09_screenshot_14.jpg", + "clusters_09_screenshot_15.jpg", + "clusters_09_screenshot_16.jpg", + "clusters_09_screenshot_17.jpg", + "clusters_09_screenshot_18.jpg", + "clusters_09_screenshot_19.jpg", + "clusters_09_screenshot_20.jpg", + "clusters_09_screenshot_21.jpg", + "clusters_09_screenshot_22.jpg", + "clusters_09_screenshot_23.jpg", + "clusters_10_screenshot_00.jpg", + "clusters_10_screenshot_01.jpg", + "clusters_10_screenshot_02.jpg", + "clusters_10_screenshot_03.jpg", + "clusters_10_screenshot_04.jpg", + "clusters_10_screenshot_05.jpg", + "clusters_10_screenshot_06.jpg", + "clusters_10_screenshot_07.jpg", + "clusters_10_screenshot_08.jpg", + "clusters_10_screenshot_09.jpg", + "clusters_10_screenshot_10.jpg", + "clusters_10_screenshot_11.jpg", + "clusters_10_screenshot_12.jpg", + "clusters_10_screenshot_13.jpg", + "clusters_10_screenshot_14.jpg", + "clusters_10_screenshot_15.jpg", + "clusters_10_screenshot_16.jpg", + "clusters_10_screenshot_17.jpg", + "clusters_10_screenshot_18.jpg", + "clusters_10_screenshot_19.jpg", + "clusters_10_screenshot_20.jpg", + "clusters_11_screenshot_00.jpg", + "clusters_11_screenshot_01.jpg", + "clusters_11_screenshot_02.jpg", + "clusters_11_screenshot_03.jpg", + "clusters_11_screenshot_04.jpg", + "clusters_11_screenshot_05.jpg", + "clusters_11_screenshot_06.jpg", + "clusters_11_screenshot_07.jpg", + "clusters_11_screenshot_08.jpg", + "clusters_11_screenshot_09.jpg", + "clusters_11_screenshot_10.jpg", + "clusters_11_screenshot_11.jpg", + "clusters_11_screenshot_12.jpg", + "clusters_11_screenshot_13.jpg", + "clusters_11_screenshot_14.jpg", + "clusters_11_screenshot_15.jpg", + "clusters_11_screenshot_16.jpg", + "clusters_11_screenshot_17.jpg", + "clusters_11_screenshot_18.jpg", + "clusters_11_screenshot_19.jpg", + "clusters_11_screenshot_20.jpg", + "clusters_11_screenshot_21.jpg", + "clusters_11_screenshot_22.jpg", + "clusters_12_screenshot_00.jpg", + "clusters_12_screenshot_01.jpg", + "clusters_12_screenshot_02.jpg", + "clusters_12_screenshot_03.jpg", + "clusters_12_screenshot_04.jpg", + "clusters_12_screenshot_05.jpg", + "clusters_12_screenshot_06.jpg", + "clusters_12_screenshot_07.jpg", + "clusters_12_screenshot_08.jpg", + "clusters_12_screenshot_09.jpg", + "clusters_12_screenshot_10.jpg", + "clusters_12_screenshot_11.jpg", + "clusters_12_screenshot_12.jpg", + "clusters_12_screenshot_13.jpg", + "clusters_12_screenshot_14.jpg", + "clusters_12_screenshot_15.jpg", + "clusters_12_screenshot_16.jpg", + "clusters_12_screenshot_17.jpg", + "clusters_12_screenshot_18.jpg", + "clusters_12_screenshot_19.jpg", + "clusters_13_screenshot_00.jpg", + "clusters_13_screenshot_01.jpg", + "clusters_13_screenshot_02.jpg", + "clusters_13_screenshot_03.jpg", + "clusters_13_screenshot_04.jpg", + "clusters_13_screenshot_05.jpg", + "clusters_13_screenshot_06.jpg", + "clusters_13_screenshot_07.jpg", + "clusters_13_screenshot_08.jpg", + "clusters_13_screenshot_09.jpg", + "clusters_13_screenshot_10.jpg", + "clusters_13_screenshot_11.jpg", + "clusters_13_screenshot_12.jpg", + "clusters_13_screenshot_13.jpg", + "clusters_13_screenshot_14.jpg", + "clusters_13_screenshot_15.jpg", + "clusters_13_screenshot_16.jpg", + "clusters_13_screenshot_17.jpg", + "clusters_14_screenshot_00.jpg", + "clusters_14_screenshot_01.jpg", + "clusters_14_screenshot_02.jpg", + "clusters_14_screenshot_03.jpg", + "clusters_14_screenshot_04.jpg", + "clusters_14_screenshot_05.jpg", + "clusters_14_screenshot_06.jpg", + "clusters_14_screenshot_07.jpg", + "clusters_14_screenshot_08.jpg", + "clusters_14_screenshot_09.jpg", + "clusters_14_screenshot_10.jpg", + "clusters_14_screenshot_11.jpg", + "clusters_14_screenshot_12.jpg", + "clusters_14_screenshot_13.jpg", + "clusters_14_screenshot_14.jpg", + "clusters_14_screenshot_15.jpg", + "clusters_14_screenshot_16.jpg", + "clusters_14_screenshot_17.jpg", + "clusters_14_screenshot_18.jpg", + "clusters_14_screenshot_19.jpg", + "clusters_15_screenshot_00.jpg", + "clusters_15_screenshot_01.jpg", + "clusters_15_screenshot_02.jpg", + "clusters_15_screenshot_03.jpg", + "clusters_15_screenshot_04.jpg", + "clusters_15_screenshot_05.jpg", + "clusters_15_screenshot_06.jpg", + "clusters_15_screenshot_07.jpg", + "clusters_15_screenshot_08.jpg", + "clusters_15_screenshot_09.jpg", + "clusters_15_screenshot_10.jpg", + "clusters_15_screenshot_11.jpg", + "clusters_15_screenshot_12.jpg", + "clusters_15_screenshot_13.jpg", + "clusters_15_screenshot_14.jpg", + "clusters_15_screenshot_15.jpg", + "clusters_15_screenshot_16.jpg", + "clusters_16_screenshot_00.jpg", + "clusters_16_screenshot_01.jpg", + "clusters_16_screenshot_02.jpg", + "clusters_16_screenshot_03.jpg", + "clusters_16_screenshot_04.jpg", + "clusters_16_screenshot_05.jpg", + "clusters_16_screenshot_06.jpg", + "clusters_16_screenshot_07.jpg", + "clusters_16_screenshot_08.jpg", + "clusters_16_screenshot_09.jpg", + "clusters_16_screenshot_10.jpg", + "clusters_16_screenshot_11.jpg", + "clusters_16_screenshot_12.jpg", + "clusters_16_screenshot_13.jpg", + "clusters_16_screenshot_14.jpg", + "clusters_16_screenshot_15.jpg", + "clusters_16_screenshot_16.jpg", + "clusters_16_screenshot_17.jpg", + "clusters_16_screenshot_18.jpg", + "clusters_16_screenshot_19.jpg", + "clusters_17_screenshot_00.jpg", + "clusters_17_screenshot_01.jpg", + "clusters_17_screenshot_02.jpg", + "clusters_17_screenshot_03.jpg", + "clusters_17_screenshot_04.jpg", + "clusters_17_screenshot_05.jpg", + "clusters_17_screenshot_06.jpg", + "clusters_17_screenshot_07.jpg", + "clusters_17_screenshot_08.jpg", + "clusters_17_screenshot_09.jpg", + "clusters_17_screenshot_10.jpg", + "clusters_17_screenshot_11.jpg", + "clusters_17_screenshot_12.jpg", + "clusters_17_screenshot_13.jpg", + "clusters_17_screenshot_14.jpg", + "clusters_17_screenshot_15.jpg", + "clusters_17_screenshot_16.jpg", + "clusters_17_screenshot_17.jpg", + "clusters_17_screenshot_18.jpg", + "clusters_17_screenshot_19.jpg", + "clusters_18_screenshot_00.jpg", + "clusters_18_screenshot_01.jpg", + "clusters_18_screenshot_02.jpg", + "clusters_18_screenshot_03.jpg", + "clusters_18_screenshot_04.jpg", + "clusters_18_screenshot_05.jpg", + "clusters_18_screenshot_06.jpg", + "clusters_18_screenshot_07.jpg", + "clusters_18_screenshot_08.jpg", + "clusters_18_screenshot_09.jpg", + "clusters_18_screenshot_10.jpg", + "clusters_18_screenshot_11.jpg", + "clusters_18_screenshot_12.jpg", + "clusters_18_screenshot_13.jpg", + "clusters_18_screenshot_14.jpg", + "clusters_18_screenshot_15.jpg", + "clusters_18_screenshot_16.jpg", + "clusters_18_screenshot_17.jpg", + "clusters_18_screenshot_18.jpg", + "clusters_18_screenshot_19.jpg", + "clusters_18_screenshot_20.jpg", + "clusters_19_screenshot_00.jpg", + "clusters_19_screenshot_01.jpg", + "clusters_19_screenshot_02.jpg", + "clusters_19_screenshot_03.jpg", + "clusters_19_screenshot_04.jpg", + "clusters_19_screenshot_05.jpg", + "clusters_19_screenshot_06.jpg", + "clusters_19_screenshot_07.jpg", + "clusters_19_screenshot_08.jpg", + "clusters_19_screenshot_09.jpg", + "clusters_19_screenshot_10.jpg", + "clusters_19_screenshot_11.jpg", + "clusters_19_screenshot_12.jpg", + "clusters_19_screenshot_13.jpg", + "clusters_19_screenshot_14.jpg", + "clusters_19_screenshot_15.jpg", + "clusters_19_screenshot_16.jpg", + "clusters_19_screenshot_17.jpg", + "clusters_20_screenshot_00.jpg", + "clusters_20_screenshot_01.jpg", + "clusters_20_screenshot_02.jpg", + "clusters_20_screenshot_03.jpg", + "clusters_20_screenshot_04.jpg", + "clusters_20_screenshot_05.jpg", + "clusters_20_screenshot_06.jpg", + "clusters_20_screenshot_07.jpg", + "clusters_20_screenshot_08.jpg", + "clusters_20_screenshot_09.jpg", + "clusters_20_screenshot_10.jpg", + "clusters_20_screenshot_11.jpg", + "clusters_20_screenshot_12.jpg", + "clusters_20_screenshot_13.jpg", + "clusters_20_screenshot_14.jpg", + "clusters_20_screenshot_15.jpg", + "clusters_20_screenshot_16.jpg", + "clusters_20_screenshot_17.jpg", + "clusters_20_screenshot_18.jpg", + "clusters_20_screenshot_19.jpg", + "clusters_21_screenshot_00.jpg", + "clusters_21_screenshot_01.jpg", + "clusters_21_screenshot_02.jpg", + "clusters_21_screenshot_03.jpg", + "clusters_21_screenshot_04.jpg", + "clusters_21_screenshot_05.jpg", + "clusters_21_screenshot_06.jpg", + "clusters_21_screenshot_07.jpg", + "clusters_21_screenshot_08.jpg", + "clusters_21_screenshot_09.jpg", + "clusters_21_screenshot_10.jpg", + "clusters_21_screenshot_11.jpg", + "clusters_21_screenshot_12.jpg", + "clusters_21_screenshot_13.jpg", + "clusters_21_screenshot_14.jpg", + "clusters_21_screenshot_15.jpg", + "clusters_21_screenshot_16.jpg", + "clusters_21_screenshot_17.jpg", + "clusters_21_screenshot_18.jpg", + "clusters_21_screenshot_19.jpg", + "clusters_21_screenshot_20.jpg", + "clusters_22_screenshot_00.jpg", + "clusters_22_screenshot_01.jpg", + "clusters_22_screenshot_02.jpg", + "clusters_22_screenshot_03.jpg", + "clusters_22_screenshot_04.jpg", + "clusters_22_screenshot_05.jpg", + "clusters_22_screenshot_06.jpg", + "clusters_22_screenshot_07.jpg", + "clusters_22_screenshot_08.jpg", + "clusters_22_screenshot_09.jpg", + "clusters_22_screenshot_10.jpg", + "clusters_22_screenshot_11.jpg", + "clusters_22_screenshot_12.jpg", + "clusters_22_screenshot_13.jpg", + "clusters_22_screenshot_14.jpg", + "clusters_22_screenshot_15.jpg", + "clusters_22_screenshot_16.jpg", + "clusters_22_screenshot_17.jpg", + "clusters_22_screenshot_18.jpg", + "clusters_22_screenshot_19.jpg", + "clusters_23_screenshot_00.jpg", + "clusters_23_screenshot_01.jpg", + "clusters_23_screenshot_02.jpg", + "clusters_23_screenshot_03.jpg", + "clusters_23_screenshot_04.jpg", + "clusters_23_screenshot_05.jpg", + "clusters_23_screenshot_06.jpg", + "clusters_23_screenshot_07.jpg", + "clusters_23_screenshot_08.jpg", + "clusters_23_screenshot_09.jpg", + "clusters_23_screenshot_10.jpg", + "clusters_23_screenshot_11.jpg", + "clusters_23_screenshot_12.jpg", + "clusters_23_screenshot_13.jpg", + "clusters_23_screenshot_14.jpg", + "clusters_23_screenshot_15.jpg", + "clusters_23_screenshot_16.jpg", + "clusters_23_screenshot_17.jpg", + "clusters_23_screenshot_18.jpg", + "clusters_23_screenshot_19.jpg", + "clusters_24_screenshot_00.jpg", + "clusters_24_screenshot_01.jpg", + "clusters_24_screenshot_02.jpg", + "clusters_24_screenshot_03.jpg", + "clusters_24_screenshot_04.jpg", + "clusters_24_screenshot_05.jpg", + "clusters_24_screenshot_06.jpg", + "clusters_24_screenshot_07.jpg", + "clusters_24_screenshot_08.jpg", + "clusters_24_screenshot_09.jpg", + "clusters_24_screenshot_10.jpg", + "clusters_24_screenshot_11.jpg", + "clusters_24_screenshot_12.jpg", + "clusters_24_screenshot_13.jpg", + "clusters_24_screenshot_14.jpg", + "clusters_24_screenshot_15.jpg", + "clusters_24_screenshot_16.jpg", + "clusters_24_screenshot_17.jpg", + "clusters_24_screenshot_18.jpg", + "clusters_24_screenshot_19.jpg", + "clusters_25_screenshot_00.jpg", + "clusters_25_screenshot_01.jpg", + "clusters_25_screenshot_02.jpg", + "clusters_25_screenshot_03.jpg", + "clusters_25_screenshot_04.jpg", + "clusters_25_screenshot_05.jpg", + "clusters_25_screenshot_06.jpg", + "clusters_25_screenshot_07.jpg", + "clusters_25_screenshot_08.jpg", + "clusters_25_screenshot_09.jpg", + "clusters_25_screenshot_10.jpg", + "clusters_25_screenshot_11.jpg", + "clusters_25_screenshot_12.jpg", + "clusters_25_screenshot_13.jpg", + "clusters_25_screenshot_14.jpg", + "clusters_25_screenshot_15.jpg", + "clusters_25_screenshot_16.jpg", + "clusters_25_screenshot_17.jpg", + "clusters_25_screenshot_18.jpg", + "clusters_25_screenshot_19.jpg", + "clusters_25_screenshot_20.jpg", + "clusters_26_screenshot_00.jpg", + "clusters_26_screenshot_01.jpg", + "clusters_26_screenshot_02.jpg", + "clusters_26_screenshot_03.jpg", + "clusters_26_screenshot_04.jpg", + "clusters_26_screenshot_05.jpg", + "clusters_26_screenshot_06.jpg", + "clusters_26_screenshot_07.jpg", + "clusters_26_screenshot_08.jpg", + "clusters_26_screenshot_09.jpg", + "clusters_26_screenshot_10.jpg", + "clusters_26_screenshot_11.jpg", + "clusters_26_screenshot_12.jpg", + "clusters_26_screenshot_13.jpg", + "clusters_26_screenshot_14.jpg", + "clusters_26_screenshot_15.jpg", + "clusters_27_screenshot_00.jpg", + "clusters_27_screenshot_01.jpg", + "clusters_27_screenshot_02.jpg", + "clusters_27_screenshot_03.jpg", + "clusters_27_screenshot_04.jpg", + "clusters_27_screenshot_05.jpg", + "clusters_27_screenshot_06.jpg", + "clusters_27_screenshot_07.jpg", + "clusters_27_screenshot_08.jpg", + "clusters_27_screenshot_09.jpg", + "clusters_27_screenshot_10.jpg", + "clusters_27_screenshot_11.jpg", + "clusters_27_screenshot_12.jpg", + "clusters_27_screenshot_13.jpg", + "clusters_27_screenshot_14.jpg", + "clusters_27_screenshot_15.jpg", + "clusters_27_screenshot_16.jpg", + "clusters_27_screenshot_17.jpg", + "clusters_27_screenshot_18.jpg", + "clusters_27_screenshot_19.jpg", + "clusters_27_screenshot_20.jpg", + "clusters_28_screenshot_00.jpg", + "clusters_28_screenshot_01.jpg", + "clusters_28_screenshot_02.jpg", + "clusters_28_screenshot_03.jpg", + "clusters_28_screenshot_04.jpg", + "clusters_28_screenshot_05.jpg", + "clusters_28_screenshot_06.jpg", + "clusters_28_screenshot_07.jpg", + "clusters_28_screenshot_08.jpg", + "clusters_28_screenshot_09.jpg", + "clusters_28_screenshot_10.jpg", + "clusters_28_screenshot_11.jpg", + "clusters_28_screenshot_12.jpg", + "clusters_28_screenshot_13.jpg", + "clusters_28_screenshot_14.jpg", + "clusters_28_screenshot_15.jpg", + "clusters_28_screenshot_16.jpg", + "clusters_28_screenshot_17.jpg", + "clusters_28_screenshot_18.jpg", + "clusters_28_screenshot_19.jpg", + "clusters_28_screenshot_20.jpg", + "clusters_28_screenshot_21.jpg", + "clusters_29_screenshot_00.jpg", + "clusters_29_screenshot_01.jpg", + "clusters_29_screenshot_02.jpg", + "clusters_29_screenshot_03.jpg", + "clusters_29_screenshot_04.jpg", + "clusters_29_screenshot_05.jpg", + "clusters_29_screenshot_06.jpg", + "clusters_29_screenshot_07.jpg", + "clusters_29_screenshot_08.jpg", + "clusters_29_screenshot_09.jpg", + "clusters_29_screenshot_10.jpg", + "clusters_29_screenshot_11.jpg", + "clusters_29_screenshot_12.jpg", + "clusters_29_screenshot_13.jpg", + "clusters_29_screenshot_14.jpg", + "clusters_29_screenshot_15.jpg", + "clusters_29_screenshot_16.jpg", + "clusters_29_screenshot_17.jpg", + "clusters_29_screenshot_18.jpg", + "clusters_29_screenshot_19.jpg", + "clusters_30_screenshot_00.jpg", + "clusters_30_screenshot_01.jpg", + "clusters_30_screenshot_02.jpg", + "clusters_30_screenshot_03.jpg", + "clusters_30_screenshot_04.jpg", + "clusters_30_screenshot_05.jpg", + "clusters_30_screenshot_06.jpg", + "clusters_30_screenshot_07.jpg", + "clusters_30_screenshot_08.jpg", + "clusters_30_screenshot_09.jpg", + "clusters_30_screenshot_10.jpg", + "clusters_30_screenshot_11.jpg", + "clusters_30_screenshot_12.jpg", + "clusters_30_screenshot_13.jpg", + "clusters_30_screenshot_14.jpg", + "clusters_30_screenshot_15.jpg", + "clusters_30_screenshot_16.jpg", + "clusters_30_screenshot_17.jpg", + "clusters_31_screenshot_00.jpg", + "clusters_31_screenshot_01.jpg", + "clusters_31_screenshot_02.jpg", + "clusters_31_screenshot_03.jpg", + "clusters_31_screenshot_04.jpg", + "clusters_31_screenshot_05.jpg", + "clusters_31_screenshot_06.jpg", + "clusters_31_screenshot_07.jpg", + "clusters_31_screenshot_08.jpg", + "clusters_31_screenshot_09.jpg", + "clusters_31_screenshot_10.jpg", + "clusters_31_screenshot_11.jpg", + "clusters_31_screenshot_12.jpg", + "clusters_31_screenshot_13.jpg", + "clusters_31_screenshot_14.jpg", + "clusters_31_screenshot_15.jpg", + "clusters_31_screenshot_16.jpg", + "clusters_31_screenshot_17.jpg", + "clusters_31_screenshot_18.jpg", + "clusters_32_screenshot_00.jpg", + "clusters_32_screenshot_01.jpg", + "clusters_32_screenshot_02.jpg", + "clusters_32_screenshot_03.jpg", + "clusters_32_screenshot_04.jpg", + "clusters_32_screenshot_05.jpg", + "clusters_32_screenshot_06.jpg", + "clusters_32_screenshot_07.jpg", + "clusters_32_screenshot_08.jpg", + "clusters_32_screenshot_09.jpg", + "clusters_32_screenshot_10.jpg", + "clusters_32_screenshot_11.jpg", + "clusters_32_screenshot_12.jpg", + "clusters_32_screenshot_13.jpg", + "clusters_32_screenshot_14.jpg", + "clusters_32_screenshot_15.jpg", + "clusters_32_screenshot_16.jpg", + "clusters_32_screenshot_17.jpg", + "clusters_32_screenshot_18.jpg", + "clusters_32_screenshot_19.jpg", + "clusters_32_screenshot_20.jpg", + "clusters_33_screenshot_00.jpg", + "clusters_33_screenshot_01.jpg", + "clusters_33_screenshot_02.jpg", + "clusters_33_screenshot_03.jpg", + "clusters_33_screenshot_04.jpg", + "clusters_33_screenshot_05.jpg", + "clusters_33_screenshot_06.jpg", + "clusters_33_screenshot_07.jpg", + "clusters_33_screenshot_08.jpg", + "clusters_33_screenshot_09.jpg", + "clusters_33_screenshot_10.jpg", + "clusters_33_screenshot_11.jpg", + "clusters_33_screenshot_12.jpg", + "clusters_33_screenshot_13.jpg", + "clusters_33_screenshot_14.jpg", + "clusters_33_screenshot_15.jpg", + "clusters_33_screenshot_16.jpg", + "clusters_33_screenshot_17.jpg", + "clusters_33_screenshot_18.jpg", + "clusters_33_screenshot_19.jpg", + "clusters_33_screenshot_20.jpg", + "clusters_34_screenshot_00.jpg", + "clusters_34_screenshot_01.jpg", + "clusters_34_screenshot_02.jpg", + "clusters_34_screenshot_03.jpg", + "clusters_34_screenshot_04.jpg", + "clusters_34_screenshot_05.jpg", + "clusters_34_screenshot_06.jpg", + "clusters_34_screenshot_07.jpg", + "clusters_34_screenshot_08.jpg", + "clusters_34_screenshot_09.jpg", + "clusters_34_screenshot_10.jpg", + "clusters_34_screenshot_11.jpg", + "clusters_34_screenshot_12.jpg", + "clusters_34_screenshot_13.jpg", + "clusters_34_screenshot_14.jpg", + "clusters_34_screenshot_15.jpg", + "clusters_34_screenshot_16.jpg", + "clusters_34_screenshot_17.jpg", + "clusters_34_screenshot_18.jpg", + "clusters_34_screenshot_19.jpg", + "clusters_35_screenshot_00.jpg", + "clusters_35_screenshot_01.jpg", + "clusters_35_screenshot_02.jpg", + "clusters_35_screenshot_03.jpg", + "clusters_35_screenshot_04.jpg", + "clusters_35_screenshot_05.jpg", + "clusters_35_screenshot_06.jpg", + "clusters_35_screenshot_07.jpg", + "clusters_35_screenshot_08.jpg", + "clusters_35_screenshot_09.jpg", + "clusters_35_screenshot_10.jpg", + "clusters_35_screenshot_11.jpg", + "clusters_35_screenshot_12.jpg", + "clusters_35_screenshot_13.jpg", + "clusters_35_screenshot_14.jpg", + "clusters_35_screenshot_15.jpg", + "clusters_35_screenshot_16.jpg", + "clusters_35_screenshot_17.jpg", + "clusters_35_screenshot_18.jpg", + "clusters_36_screenshot_00.jpg", + "clusters_36_screenshot_01.jpg", + "clusters_36_screenshot_02.jpg", + "clusters_36_screenshot_03.jpg", + "clusters_36_screenshot_04.jpg", + "clusters_36_screenshot_05.jpg", + "clusters_36_screenshot_06.jpg", + "clusters_36_screenshot_07.jpg", + "clusters_36_screenshot_08.jpg", + "clusters_36_screenshot_09.jpg", + "clusters_36_screenshot_10.jpg", + "clusters_36_screenshot_11.jpg", + "clusters_36_screenshot_12.jpg", + "clusters_36_screenshot_13.jpg", + "clusters_36_screenshot_14.jpg", + "clusters_36_screenshot_15.jpg", + "clusters_36_screenshot_16.jpg", + "clusters_36_screenshot_17.jpg", + "clusters_36_screenshot_18.jpg", + "clusters_37_screenshot_00.jpg", + "clusters_37_screenshot_01.jpg", + "clusters_37_screenshot_02.jpg", + "clusters_37_screenshot_03.jpg", + "clusters_37_screenshot_04.jpg", + "clusters_37_screenshot_05.jpg", + "clusters_37_screenshot_06.jpg", + "clusters_37_screenshot_07.jpg", + "clusters_37_screenshot_08.jpg", + "clusters_37_screenshot_09.jpg", + "clusters_37_screenshot_10.jpg", + "clusters_37_screenshot_11.jpg", + "clusters_37_screenshot_12.jpg", + "clusters_37_screenshot_13.jpg", + "clusters_37_screenshot_14.jpg", + "clusters_37_screenshot_15.jpg", + "clusters_37_screenshot_16.jpg", + "clusters_37_screenshot_17.jpg", + "clusters_37_screenshot_18.jpg", + "clusters_38_screenshot_00.jpg", + "clusters_38_screenshot_01.jpg", + "clusters_38_screenshot_02.jpg", + "clusters_38_screenshot_03.jpg", + "clusters_38_screenshot_04.jpg", + "clusters_38_screenshot_05.jpg", + "clusters_38_screenshot_06.jpg", + "clusters_38_screenshot_07.jpg", + "clusters_38_screenshot_08.jpg", + "clusters_38_screenshot_09.jpg", + "clusters_38_screenshot_10.jpg", + "clusters_38_screenshot_11.jpg", + "clusters_38_screenshot_12.jpg", + "clusters_38_screenshot_13.jpg", + "clusters_38_screenshot_14.jpg", + "clusters_38_screenshot_15.jpg", + "clusters_38_screenshot_16.jpg", + "clusters_38_screenshot_17.jpg", + "clusters_38_screenshot_18.jpg", + "clusters_38_screenshot_19.jpg", + "clusters_38_screenshot_20.jpg", + "clusters_39_screenshot_00.jpg", + "clusters_39_screenshot_01.jpg", + "clusters_39_screenshot_02.jpg", + "clusters_39_screenshot_03.jpg", + "clusters_39_screenshot_04.jpg", + "clusters_39_screenshot_05.jpg", + "clusters_39_screenshot_06.jpg", + "clusters_39_screenshot_07.jpg", + "clusters_39_screenshot_08.jpg", + "clusters_39_screenshot_09.jpg", + "clusters_39_screenshot_10.jpg", + "clusters_39_screenshot_11.jpg", + "clusters_39_screenshot_12.jpg", + "clusters_39_screenshot_13.jpg", + "clusters_39_screenshot_14.jpg", + "clusters_39_screenshot_15.jpg", + "clusters_39_screenshot_16.jpg", + "clusters_39_screenshot_17.jpg", + "clusters_39_screenshot_18.jpg", + "clusters_39_screenshot_19.jpg", + "clusters_40_screenshot_00.jpg", + "clusters_40_screenshot_01.jpg", + "clusters_40_screenshot_02.jpg", + "clusters_40_screenshot_03.jpg", + "clusters_40_screenshot_04.jpg", + "clusters_40_screenshot_05.jpg", + "clusters_40_screenshot_06.jpg", + "clusters_40_screenshot_07.jpg", + "clusters_40_screenshot_08.jpg", + "clusters_40_screenshot_09.jpg", + "clusters_40_screenshot_10.jpg", + "clusters_40_screenshot_11.jpg", + "clusters_40_screenshot_12.jpg", + "clusters_40_screenshot_13.jpg", + "clusters_40_screenshot_14.jpg", + "clusters_40_screenshot_15.jpg", + "clusters_40_screenshot_16.jpg", + "clusters_40_screenshot_17.jpg", + "clusters_40_screenshot_18.jpg", + "clusters_40_screenshot_19.jpg", + "clusters_41_screenshot_00.jpg", + "clusters_41_screenshot_01.jpg", + "clusters_41_screenshot_02.jpg", + "clusters_41_screenshot_03.jpg", + "clusters_41_screenshot_04.jpg", + "clusters_41_screenshot_05.jpg", + "clusters_41_screenshot_06.jpg", + "clusters_41_screenshot_07.jpg", + "clusters_41_screenshot_08.jpg", + "clusters_41_screenshot_09.jpg", + "clusters_41_screenshot_10.jpg", + "clusters_41_screenshot_11.jpg", + "clusters_41_screenshot_12.jpg", + "clusters_41_screenshot_13.jpg", + "clusters_41_screenshot_14.jpg", + "clusters_41_screenshot_15.jpg", + "clusters_41_screenshot_16.jpg", + "clusters_41_screenshot_17.jpg", + "clusters_41_screenshot_18.jpg", + "clusters_41_screenshot_19.jpg", + "clusters_41_screenshot_20.jpg", + "clusters_41_screenshot_21.jpg", + "clusters_42_screenshot_00.jpg", + "clusters_42_screenshot_01.jpg", + "clusters_42_screenshot_02.jpg", + "clusters_42_screenshot_03.jpg", + "clusters_42_screenshot_04.jpg", + "clusters_42_screenshot_05.jpg", + "clusters_42_screenshot_06.jpg", + "clusters_42_screenshot_07.jpg", + "clusters_42_screenshot_08.jpg", + "clusters_42_screenshot_09.jpg", + "clusters_42_screenshot_10.jpg", + "clusters_42_screenshot_11.jpg", + "clusters_42_screenshot_12.jpg", + "clusters_42_screenshot_13.jpg", + "clusters_42_screenshot_14.jpg", + "clusters_42_screenshot_15.jpg", + "clusters_42_screenshot_16.jpg", + "clusters_42_screenshot_17.jpg", + "clusters_42_screenshot_18.jpg", + "clusters_42_screenshot_19.jpg", + "clusters_42_screenshot_20.jpg", + "clusters_42_screenshot_21.jpg", + "clusters_42_screenshot_22.jpg", + "clusters_42_screenshot_23.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "clusters-04", + "clusters-05", + "clusters-06", + "clusters-07", + "clusters-08", + "clusters-09", + "clusters-10", + "clusters-11", + "clusters-12", + "clusters-13", + "clusters-14", + "clusters-15", + "clusters-16", + "clusters-17", + "clusters-18", + "clusters-19", + "clusters-20", + "clusters-21", + "clusters-22", + "clusters-23", + "clusters-24", + "clusters-25", + "clusters-26", + "clusters-27", + "clusters-28", + "clusters-29", + "clusters-30", + "clusters-31", + "clusters-32", + "clusters-33", + "clusters-34", + "clusters-35", + "clusters-36", + "clusters-37", + "clusters-38", + "clusters-39", + "clusters-40", + "clusters-41", + "clusters-42", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 1, + "internalId": "683f5aa8172b156804a52d9f", + "creationDate": "2025-06-03T20:27:20.000Z", + "identifier": "A001M" +} \ No newline at end of file diff --git a/data/files/A001M/records.jsonl b/data/files/A001M/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..cdb9cee27755808cfbe95f884a4676185691fbb8 --- /dev/null +++ b/data/files/A001M/records.jsonl @@ -0,0 +1 @@ +{"project_identifier": "A001M", "accession": "A001M", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "clusters-06", "clusters-07", "clusters-08", "clusters-09", "clusters-10", "clusters-11", "clusters-12", "clusters-13", "clusters-14", "clusters-15", "clusters-16", "clusters-17", "clusters-18", "clusters-19", "clusters-20", "clusters-21", "clusters-22", "clusters-23", "clusters-24", "clusters-25", "clusters-26", "clusters-27", "clusters-28", "clusters-29", "clusters-30", "clusters-31", "clusters-32", "clusters-33", "clusters-34", "clusters-35", "clusters-36", "clusters-37", "clusters-38", "clusters-39", "clusters-40", "clusters-41", "clusters-42", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr"], "chains": [], "metadata": {"NAME": "Dynarepo 1OQE", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1OQE"], "FORCED_REFERENCES": null, "REFERENCES": ["Q9Y275", "Q96RJ3"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["PTPCVPAECFDLLVRHCVACGLLR", "PTPCVPAECFDLLVRHCVACGLLRTPRPKPA", "VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL"], "NUCLSEQ": [], "DOMAINS": ["Tumor necrosis factor ligand superfamily member 13b, membrane form", "Tumor necrosis factor ligand superfamily member 13b, soluble form", "THD", "Tumor necrosis factor receptor superfamily member 13C", "Essential for TNFSF13B/TALL1/BAFF/BLyS binding", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 26590, "SYSTRES": 1681, "PROTATS": 26590, "PROTRES": 1681, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain G interaction", "agent_1": "chain A", "agent_2": "chain G", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain A-chain K interaction", "agent_1": "chain A", "agent_2": "chain K", "selection_1": "chain A", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain A-chain M interaction", "agent_1": "chain A", "agent_2": "chain M", "selection_1": "chain A", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain A-chain P interaction", "agent_1": "chain A", "agent_2": "chain P", "selection_1": "chain A", "selection_2": "chain G", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain H", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain I", "type": "protein-protein"}, {"name": "chain B-chain F interaction", "agent_1": "chain B", "agent_2": "chain F", "selection_1": "chain A", "selection_2": "chain J", "type": "protein-protein"}, {"name": "chain B-chain K interaction", "agent_1": "chain B", "agent_2": "chain K", "selection_1": "chain A", "selection_2": "chain K", "type": "protein-protein"}, {"name": "chain B-chain L interaction", "agent_1": "chain B", "agent_2": "chain L", "selection_1": "chain A", "selection_2": "chain L", "type": "protein-protein"}, {"name": "chain B-chain O interaction", "agent_1": "chain B", "agent_2": "chain O", "selection_1": "chain A", "selection_2": "chain M", "type": "protein-protein"}, {"name": "chain C-chain F interaction", "agent_1": "chain C", "agent_2": "chain F", "selection_1": "chain A", "selection_2": "chain N", "type": "protein-protein"}, {"name": "chain C-chain G interaction", "agent_1": "chain C", "agent_2": "chain G", "selection_1": "chain A", "selection_2": "chain O", "type": "protein-protein"}, {"name": "chain C-chain H interaction", "agent_1": "chain C", "agent_2": "chain H", "selection_1": "chain A", "selection_2": "chain P", "type": "protein-protein"}, {"name": "chain C-chain L interaction", "agent_1": "chain C", "agent_2": "chain L", "selection_1": "chain A", "selection_2": "chain Q", "type": "protein-protein"}, {"name": "chain C-chain M interaction", "agent_1": "chain C", "agent_2": "chain M", "selection_1": "chain A", "selection_2": "chain R", "type": "protein-protein"}, {"name": "chain C-chain P interaction", "agent_1": "chain C", "agent_2": "chain P", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain D-chain E interaction", "agent_1": "chain D", "agent_2": "chain E", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain D-chain F interaction", "agent_1": "chain D", "agent_2": "chain F", "selection_1": "chain B", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain D-chain O interaction", "agent_1": "chain D", "agent_2": "chain O", "selection_1": "chain B", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain E-chain F interaction", "agent_1": "chain E", "agent_2": "chain F", "selection_1": "chain B", "selection_2": "chain G", "type": "protein-protein"}, {"name": "chain E-chain J interaction", "agent_1": "chain E", "agent_2": "chain J", "selection_1": "chain B", "selection_2": "chain H", "type": "protein-protein"}, {"name": "chain E-chain N interaction", "agent_1": "chain E", "agent_2": "chain N", "selection_1": "chain B", "selection_2": "chain I", "type": "protein-protein"}, {"name": "chain E-chain R interaction", "agent_1": "chain E", "agent_2": "chain R", "selection_1": "chain B", "selection_2": "chain J", "type": "protein-protein"}, {"name": "chain F-chain J interaction", "agent_1": "chain F", "agent_2": "chain J", "selection_1": "chain B", "selection_2": "chain K", "type": "protein-protein"}, {"name": "chain F-chain L interaction", "agent_1": "chain F", "agent_2": "chain L", "selection_1": "chain B", "selection_2": "chain L", "type": "protein-protein"}, {"name": "chain F-chain N interaction", "agent_1": "chain F", "agent_2": "chain N", "selection_1": "chain B", "selection_2": "chain M", "type": "protein-protein"}, {"name": "chain F-chain O interaction", "agent_1": "chain F", "agent_2": "chain O", "selection_1": "chain B", "selection_2": "chain N", "type": "protein-protein"}, {"name": "chain G-chain H interaction", "agent_1": "chain G", "agent_2": "chain H", "selection_1": "chain B", "selection_2": "chain O", "type": "protein-protein"}, {"name": "chain G-chain I interaction", "agent_1": "chain G", "agent_2": "chain I", "selection_1": "chain B", "selection_2": "chain P", "type": "protein-protein"}, {"name": "chain G-chain M interaction", "agent_1": "chain G", "agent_2": "chain M", "selection_1": "chain B", "selection_2": "chain Q", "type": "protein-protein"}, {"name": "chain G-chain P interaction", "agent_1": "chain G", "agent_2": "chain P", "selection_1": "chain B", "selection_2": "chain R", "type": "protein-protein"}, {"name": "chain G-chain Q interaction", "agent_1": "chain G", "agent_2": "chain Q", "selection_1": "chain C", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain H-chain I interaction", "agent_1": "chain H", "agent_2": "chain I", "selection_1": "chain C", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain H-chain P interaction", "agent_1": "chain H", "agent_2": "chain P", "selection_1": "chain C", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain I-chain Q interaction", "agent_1": "chain I", "agent_2": "chain Q", "selection_1": "chain C", "selection_2": "chain G", "type": "protein-protein"}, {"name": "chain J-chain N interaction", "agent_1": "chain J", "agent_2": "chain N", "selection_1": "chain C", "selection_2": "chain H", "type": "protein-protein"}, {"name": "chain J-chain R interaction", "agent_1": "chain J", "agent_2": "chain R", "selection_1": "chain C", "selection_2": "chain I", "type": "protein-protein"}, {"name": "chain L-chain O interaction", "agent_1": "chain L", "agent_2": "chain O", "selection_1": "chain C", "selection_2": "chain J", "type": "protein-protein"}, {"name": "chain M-chain P interaction", "agent_1": "chain M", "agent_2": "chain P", "selection_1": "chain C", "selection_2": "chain K", "type": "protein-protein"}, {"name": "chain N-chain R interaction", "agent_1": "chain N", "agent_2": "chain R", "selection_1": "chain C", "selection_2": "chain L", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 17.0815, "BOXSIZEY": 17.0815, "BOXSIZEZ": 12.086, "mdName": "replica 1", "mdAtoms": 26590, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001M/files/topology.tpr", "length": 7909028, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001M/files/screenshot.jpg", "length": 23163, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001M/files/trajectory.bin", "length": 1595719080, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 5001, "atoms": 26590}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_01.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_02.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_03.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_04.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_05.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_06.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_07.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_08.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_09.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_10.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_11.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_12.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_13.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_14.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_15.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_16.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A001M/files/pca_trajectory_17.bin", "length": 1210320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0, "frames": 20, "atoms": 5043}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001M/files/structure.pdb", "length": 2153825, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001M/files/trajectory.xtc", "length": 506087092, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_00.jpg", "length": 22571, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_01.jpg", "length": 22509, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_02.jpg", "length": 22450, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_03.jpg", "length": 22777, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_04.jpg", "length": 22880, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_05.jpg", "length": 22566, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_06.jpg", "length": 22288, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_07.jpg", "length": 22493, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_08.jpg", "length": 22607, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_09.jpg", "length": 22838, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_10.jpg", "length": 23007, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_11.jpg", "length": 22256, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_12.jpg", "length": 22769, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_13.jpg", "length": 22531, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_14.jpg", "length": 22251, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_15.jpg", "length": 22614, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_16.jpg", "length": 22504, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_17.jpg", "length": 22698, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_18.jpg", "length": 22426, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_19.jpg", "length": 22700, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_00_screenshot_20.jpg", "length": 21902, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_00.jpg", "length": 22931, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_01.jpg", "length": 22576, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_02.jpg", "length": 23185, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_03.jpg", "length": 23566, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_04.jpg", "length": 22846, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_05.jpg", "length": 23123, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_06.jpg", "length": 22839, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_07.jpg", "length": 23194, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_08.jpg", "length": 22883, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_09.jpg", "length": 23305, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_10.jpg", "length": 22950, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_11.jpg", "length": 23225, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_12.jpg", "length": 23409, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_13.jpg", "length": 22880, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_14.jpg", "length": 23060, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_15.jpg", "length": 22733, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_16.jpg", "length": 23585, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_17.jpg", "length": 23002, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_01_screenshot_18.jpg", "length": 23320, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_00.jpg", "length": 23214, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_01.jpg", "length": 23778, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_02.jpg", "length": 23399, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_03.jpg", "length": 22983, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_04.jpg", "length": 23967, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_05.jpg", "length": 23425, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_06.jpg", "length": 23433, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_07.jpg", "length": 23523, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_08.jpg", "length": 23454, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_09.jpg", "length": 23241, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_10.jpg", "length": 23096, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_11.jpg", "length": 23198, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_12.jpg", "length": 23291, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_13.jpg", "length": 23504, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_14.jpg", "length": 23574, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_15.jpg", "length": 23681, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_16.jpg", "length": 23257, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_02_screenshot_17.jpg", "length": 23209, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_00.jpg", "length": 23007, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_01.jpg", "length": 22375, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_02.jpg", "length": 21994, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_03.jpg", "length": 22658, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_04.jpg", "length": 23217, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_05.jpg", "length": 22736, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_06.jpg", "length": 22974, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_07.jpg", "length": 22259, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_08.jpg", "length": 22906, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_09.jpg", "length": 22521, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_10.jpg", "length": 22672, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_11.jpg", "length": 22647, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_12.jpg", "length": 22662, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_13.jpg", "length": 22719, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_14.jpg", "length": 22762, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_15.jpg", "length": 22583, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_16.jpg", "length": 22563, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_17.jpg", "length": 22872, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_03_screenshot_18.jpg", "length": 22995, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_00.jpg", "length": 23897, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_01.jpg", "length": 23443, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_02.jpg", "length": 24109, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_03.jpg", "length": 24038, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_04.jpg", "length": 23853, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_05.jpg", "length": 23529, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_06.jpg", "length": 24122, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_07.jpg", "length": 23941, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_08.jpg", "length": 23670, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_09.jpg", "length": 23917, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_10.jpg", "length": 23822, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_11.jpg", "length": 23898, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_12.jpg", "length": 24107, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_13.jpg", "length": 23787, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_14.jpg", "length": 24045, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_15.jpg", "length": 23796, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_16.jpg", "length": 23960, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_17.jpg", "length": 23537, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_18.jpg", "length": 24091, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_19.jpg", "length": 23853, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_20.jpg", "length": 24023, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_04_screenshot_21.jpg", "downloadUrl": "/projects/A001M/files/clusters_04_screenshot_21.jpg", "length": 24007, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_00.jpg", "length": 19986, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_01.jpg", "length": 20224, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_02.jpg", "length": 20204, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_03.jpg", "length": 20559, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_04.jpg", "length": 19997, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_05.jpg", "length": 20236, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_06.jpg", "length": 19979, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_07.jpg", "length": 19914, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_08.jpg", "length": 20126, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_09.jpg", "length": 20298, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_10.jpg", "length": 20334, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_11.jpg", "length": 20193, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_12.jpg", "length": 20023, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_13.jpg", "length": 20253, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_14.jpg", "length": 20159, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_15.jpg", "length": 20239, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_16.jpg", "length": 20215, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_17.jpg", "length": 19699, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_05_screenshot_18.jpg", "length": 19911, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_00.jpg", "length": 23580, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_01.jpg", "length": 22984, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_02.jpg", "length": 23049, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_03.jpg", "length": 23712, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_04.jpg", "length": 23470, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_05.jpg", "length": 23842, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_06.jpg", "length": 23187, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_07.jpg", "length": 23370, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_08.jpg", "length": 23401, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_09.jpg", "length": 23730, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_10.jpg", "length": 23109, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_11.jpg", "length": 23550, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_12.jpg", "length": 23314, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_13.jpg", "length": 22897, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_14.jpg", "length": 23039, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_15.jpg", "length": 23385, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_16.jpg", "length": 22867, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_17.jpg", "length": 23794, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_18.jpg", "length": 23380, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_19.jpg", "length": 23178, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_06_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_06_screenshot_20.jpg", "length": 23449, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_00.jpg", "length": 23882, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_01.jpg", "length": 23405, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_02.jpg", "length": 24068, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_03.jpg", "length": 23478, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_04.jpg", "length": 23745, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_05.jpg", "length": 23673, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_06.jpg", "length": 23455, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_07.jpg", "length": 23425, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_08.jpg", "length": 23515, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_09.jpg", "length": 23250, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_10.jpg", "length": 23552, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_11.jpg", "length": 23580, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_12.jpg", "length": 24100, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_13.jpg", "length": 23387, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_14.jpg", "length": 23651, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_15.jpg", "length": 23590, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_16.jpg", "length": 23329, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_17.jpg", "length": 23918, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_07_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_07_screenshot_18.jpg", "length": 23799, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_00.jpg", "length": 23018, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_01.jpg", "length": 23153, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_02.jpg", "length": 23005, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_03.jpg", "length": 23044, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_04.jpg", "length": 23491, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_05.jpg", "length": 22936, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_06.jpg", "length": 23050, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_07.jpg", "length": 22922, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_08.jpg", "length": 23560, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_09.jpg", "length": 22824, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_10.jpg", "length": 22766, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_11.jpg", "length": 23175, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_12.jpg", "length": 23118, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_13.jpg", "length": 22937, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_14.jpg", "length": 22752, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_15.jpg", "length": 23265, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_16.jpg", "length": 23285, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_17.jpg", "length": 23451, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_08_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_08_screenshot_18.jpg", "length": 22900, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_00.jpg", "length": 24718, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_01.jpg", "length": 24637, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_02.jpg", "length": 24084, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_03.jpg", "length": 24271, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_04.jpg", "length": 24223, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_05.jpg", "length": 24109, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_06.jpg", "length": 24103, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_07.jpg", "length": 24770, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_08.jpg", "length": 24260, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_09.jpg", "length": 24746, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_10.jpg", "length": 23976, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_11.jpg", "length": 24184, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_12.jpg", "length": 24540, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_13.jpg", "length": 24430, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_14.jpg", "length": 24562, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_15.jpg", "length": 24236, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_16.jpg", "length": 25040, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_17.jpg", "length": 24374, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_18.jpg", "length": 24241, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_19.jpg", "length": 24473, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_20.jpg", "length": 24780, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_21.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_21.jpg", "length": 24476, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_22.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_22.jpg", "length": 24304, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_09_screenshot_23.jpg", "downloadUrl": "/projects/A001M/files/clusters_09_screenshot_23.jpg", "length": 24379, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_00.jpg", "length": 21543, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_01.jpg", "length": 21448, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_02.jpg", "length": 21333, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_03.jpg", "length": 21200, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_04.jpg", "length": 21373, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_05.jpg", "length": 21232, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_06.jpg", "length": 21381, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_07.jpg", "length": 21351, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_08.jpg", "length": 21286, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_09.jpg", "length": 21406, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_10.jpg", "length": 21567, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_11.jpg", "length": 21477, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_12.jpg", "length": 21282, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_13.jpg", "length": 21402, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_14.jpg", "length": 20714, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_15.jpg", "length": 21424, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_16.jpg", "length": 21847, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_17.jpg", "length": 21408, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_18.jpg", "length": 21609, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_19.jpg", "length": 21499, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_10_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_10_screenshot_20.jpg", "length": 21240, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_00.jpg", "length": 22947, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_01.jpg", "length": 22950, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_02.jpg", "length": 23162, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_03.jpg", "length": 22509, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_04.jpg", "length": 22834, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_05.jpg", "length": 22941, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_06.jpg", "length": 23027, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_07.jpg", "length": 23397, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_08.jpg", "length": 22986, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_09.jpg", "length": 23119, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_10.jpg", "length": 23012, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_11.jpg", "length": 22904, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_12.jpg", "length": 23021, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_13.jpg", "length": 22726, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_14.jpg", "length": 23028, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_15.jpg", "length": 23174, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_16.jpg", "length": 23057, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_17.jpg", "length": 22922, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_18.jpg", "length": 23149, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_19.jpg", "length": 23442, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_20.jpg", "length": 22864, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_21.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_21.jpg", "length": 23075, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_11_screenshot_22.jpg", "downloadUrl": "/projects/A001M/files/clusters_11_screenshot_22.jpg", "length": 22985, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_00.jpg", "length": 22678, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_01.jpg", "length": 22347, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_02.jpg", "length": 22441, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_03.jpg", "length": 22269, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_04.jpg", "length": 22519, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_05.jpg", "length": 22000, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_06.jpg", "length": 22202, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_07.jpg", "length": 21895, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_08.jpg", "length": 22562, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_09.jpg", "length": 22582, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_10.jpg", "length": 22526, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_11.jpg", "length": 22772, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_12.jpg", "length": 22499, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_13.jpg", "length": 22398, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_14.jpg", "length": 22137, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_15.jpg", "length": 22642, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_16.jpg", "length": 22403, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_17.jpg", "length": 22050, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_18.jpg", "length": 22360, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_12_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_12_screenshot_19.jpg", "length": 22283, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_00.jpg", "length": 22364, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_01.jpg", "length": 22357, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_02.jpg", "length": 22238, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_03.jpg", "length": 21886, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_04.jpg", "length": 22418, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_05.jpg", "length": 22088, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_06.jpg", "length": 22470, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_07.jpg", "length": 22125, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_08.jpg", "length": 22374, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_09.jpg", "length": 22196, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_10.jpg", "length": 22779, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_11.jpg", "length": 22265, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_12.jpg", "length": 21949, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_13.jpg", "length": 22031, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_14.jpg", "length": 22324, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_15.jpg", "length": 22156, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_16.jpg", "length": 22203, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_13_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_13_screenshot_17.jpg", "length": 22135, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_00.jpg", "length": 23359, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_01.jpg", "length": 22765, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_02.jpg", "length": 22965, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_03.jpg", "length": 23154, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_04.jpg", "length": 23582, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_05.jpg", "length": 23050, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_06.jpg", "length": 23368, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_07.jpg", "length": 23005, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_08.jpg", "length": 23266, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_09.jpg", "length": 23214, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_10.jpg", "length": 23141, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_11.jpg", "length": 23399, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_12.jpg", "length": 22459, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_13.jpg", "length": 23115, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_14.jpg", "length": 23077, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_15.jpg", "length": 23170, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_16.jpg", "length": 22751, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_17.jpg", "length": 23151, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_18.jpg", "length": 22946, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_14_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_14_screenshot_19.jpg", "length": 23265, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_00.jpg", "length": 23270, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_01.jpg", "length": 23379, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_02.jpg", "length": 23297, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_03.jpg", "length": 23352, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_04.jpg", "length": 23577, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_05.jpg", "length": 23825, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_06.jpg", "length": 23351, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_07.jpg", "length": 23634, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_08.jpg", "length": 23370, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_09.jpg", "length": 23706, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_10.jpg", "length": 23595, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_11.jpg", "length": 23376, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_12.jpg", "length": 23694, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_13.jpg", "length": 23295, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_14.jpg", "length": 23387, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_15.jpg", "length": 23486, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_15_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_15_screenshot_16.jpg", "length": 23498, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_00.jpg", "length": 23594, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_01.jpg", "length": 22906, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_02.jpg", "length": 23372, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_03.jpg", "length": 23526, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_04.jpg", "length": 23470, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_05.jpg", "length": 22990, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_06.jpg", "length": 23047, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_07.jpg", "length": 23183, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_08.jpg", "length": 23529, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_09.jpg", "length": 23088, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_10.jpg", "length": 23416, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_11.jpg", "length": 23796, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_12.jpg", "length": 23311, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_13.jpg", "length": 23476, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_14.jpg", "length": 23192, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_15.jpg", "length": 23600, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_16.jpg", "length": 23098, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_17.jpg", "length": 23339, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_18.jpg", "length": 23108, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_16_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_16_screenshot_19.jpg", "length": 23388, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_00.jpg", "length": 21646, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_01.jpg", "length": 21812, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_02.jpg", "length": 21992, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_03.jpg", "length": 22113, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_04.jpg", "length": 21862, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_05.jpg", "length": 21937, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_06.jpg", "length": 21717, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_07.jpg", "length": 21906, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_08.jpg", "length": 21810, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_09.jpg", "length": 22342, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_10.jpg", "length": 21715, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_11.jpg", "length": 22219, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_12.jpg", "length": 22146, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_13.jpg", "length": 21814, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_14.jpg", "length": 22029, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_15.jpg", "length": 21627, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_16.jpg", "length": 21592, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_17.jpg", "length": 21983, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_18.jpg", "length": 22428, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_17_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_17_screenshot_19.jpg", "length": 22132, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_00.jpg", "length": 24158, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_01.jpg", "length": 24392, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_02.jpg", "length": 24168, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_03.jpg", "length": 24656, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_04.jpg", "length": 24455, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_05.jpg", "length": 24804, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_06.jpg", "length": 23852, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_07.jpg", "length": 24572, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_08.jpg", "length": 24498, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_09.jpg", "length": 24334, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_10.jpg", "length": 23977, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_11.jpg", "length": 24195, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_12.jpg", "length": 24288, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_13.jpg", "length": 23980, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_14.jpg", "length": 24475, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_15.jpg", "length": 24465, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_16.jpg", "length": 24486, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_17.jpg", "length": 24669, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_18.jpg", "length": 24531, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_19.jpg", "length": 24418, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_18_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_18_screenshot_20.jpg", "length": 24325, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_00.jpg", "length": 22869, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_01.jpg", "length": 23217, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_02.jpg", "length": 23113, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_03.jpg", "length": 23071, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_04.jpg", "length": 23167, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_05.jpg", "length": 22895, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_06.jpg", "length": 23213, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_07.jpg", "length": 22841, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_08.jpg", "length": 23002, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_09.jpg", "length": 23040, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_10.jpg", "length": 23309, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_11.jpg", "length": 23120, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_12.jpg", "length": 22892, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_13.jpg", "length": 23110, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_14.jpg", "length": 22904, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_15.jpg", "length": 23195, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_16.jpg", "length": 23070, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_19_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_19_screenshot_17.jpg", "length": 23166, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_00.jpg", "length": 23892, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_01.jpg", "length": 23323, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_02.jpg", "length": 23273, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_03.jpg", "length": 23638, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_04.jpg", "length": 23894, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_05.jpg", "length": 23539, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_06.jpg", "length": 23666, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_07.jpg", "length": 23663, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_08.jpg", "length": 23180, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_09.jpg", "length": 23363, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_10.jpg", "length": 22863, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_11.jpg", "length": 23319, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_12.jpg", "length": 23547, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_13.jpg", "length": 23191, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_14.jpg", "length": 23342, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_15.jpg", "length": 23843, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_16.jpg", "length": 23508, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_17.jpg", "length": 23547, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_18.jpg", "length": 23493, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_20_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_20_screenshot_19.jpg", "length": 23418, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_00.jpg", "length": 21483, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_01.jpg", "length": 21072, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_02.jpg", "length": 21439, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_03.jpg", "length": 21236, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_04.jpg", "length": 21359, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_05.jpg", "length": 21795, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_06.jpg", "length": 21651, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_07.jpg", "length": 21224, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_08.jpg", "length": 20964, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_09.jpg", "length": 21173, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_10.jpg", "length": 21442, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_11.jpg", "length": 21336, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_12.jpg", "length": 21110, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_13.jpg", "length": 21338, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_14.jpg", "length": 21099, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_15.jpg", "length": 21327, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_16.jpg", "length": 21556, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_17.jpg", "length": 21594, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_18.jpg", "length": 21765, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_19.jpg", "length": 21304, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_21_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_21_screenshot_20.jpg", "length": 21520, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_00.jpg", "length": 24765, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_01.jpg", "length": 24463, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_02.jpg", "length": 25291, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_03.jpg", "length": 24608, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_04.jpg", "length": 24994, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_05.jpg", "length": 24852, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_06.jpg", "length": 24515, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_07.jpg", "length": 23984, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_08.jpg", "length": 24712, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_09.jpg", "length": 24986, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_10.jpg", "length": 24521, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_11.jpg", "length": 24681, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_12.jpg", "length": 24187, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_13.jpg", "length": 24561, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_14.jpg", "length": 24256, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_15.jpg", "length": 24600, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_16.jpg", "length": 24386, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_17.jpg", "length": 24633, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_18.jpg", "length": 24888, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_22_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_22_screenshot_19.jpg", "length": 24842, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_00.jpg", "length": 22049, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_01.jpg", "length": 22305, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_02.jpg", "length": 22336, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_03.jpg", "length": 22367, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_04.jpg", "length": 22108, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_05.jpg", "length": 22218, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_06.jpg", "length": 22814, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_07.jpg", "length": 22648, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_08.jpg", "length": 22131, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_09.jpg", "length": 22189, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_10.jpg", "length": 21848, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_11.jpg", "length": 22660, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_12.jpg", "length": 22073, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_13.jpg", "length": 22129, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_14.jpg", "length": 22087, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_15.jpg", "length": 22138, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_16.jpg", "length": 22693, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_17.jpg", "length": 22381, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_18.jpg", "length": 22188, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_23_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_23_screenshot_19.jpg", "length": 22228, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_00.jpg", "length": 24159, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_01.jpg", "length": 24036, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_02.jpg", "length": 24143, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_03.jpg", "length": 24313, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_04.jpg", "length": 23707, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_05.jpg", "length": 23918, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_06.jpg", "length": 24250, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_07.jpg", "length": 24133, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_08.jpg", "length": 23709, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_09.jpg", "length": 24167, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_10.jpg", "length": 24396, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_11.jpg", "length": 23821, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_12.jpg", "length": 23797, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_13.jpg", "length": 23715, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_14.jpg", "length": 24243, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_15.jpg", "length": 24792, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_16.jpg", "length": 23907, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_17.jpg", "length": 24152, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_18.jpg", "length": 24263, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_24_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_24_screenshot_19.jpg", "length": 23951, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_00.jpg", "length": 22865, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_01.jpg", "length": 22584, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_02.jpg", "length": 22557, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_03.jpg", "length": 22618, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_04.jpg", "length": 22923, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_05.jpg", "length": 22803, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_06.jpg", "length": 22455, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_07.jpg", "length": 22361, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_08.jpg", "length": 22509, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_09.jpg", "length": 22571, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_10.jpg", "length": 22483, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_11.jpg", "length": 22163, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_12.jpg", "length": 22670, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_13.jpg", "length": 22890, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_14.jpg", "length": 22896, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_15.jpg", "length": 22966, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_16.jpg", "length": 22828, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_17.jpg", "length": 22433, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_18.jpg", "length": 22510, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_19.jpg", "length": 22740, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_25_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_25_screenshot_20.jpg", "length": 22788, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_00.jpg", "length": 20378, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_01.jpg", "length": 20149, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_02.jpg", "length": 20069, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_03.jpg", "length": 20420, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_04.jpg", "length": 20390, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_05.jpg", "length": 20045, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_06.jpg", "length": 20172, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_07.jpg", "length": 20207, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_08.jpg", "length": 19763, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_09.jpg", "length": 20106, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_10.jpg", "length": 20499, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_11.jpg", "length": 19962, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_12.jpg", "length": 19863, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_13.jpg", "length": 19966, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_14.jpg", "length": 20417, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_26_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_26_screenshot_15.jpg", "length": 20107, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_00.jpg", "length": 24274, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_01.jpg", "length": 23550, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_02.jpg", "length": 23645, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_03.jpg", "length": 23346, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_04.jpg", "length": 23602, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_05.jpg", "length": 23725, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_06.jpg", "length": 23623, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_07.jpg", "length": 23851, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_08.jpg", "length": 23324, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_09.jpg", "length": 23542, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_10.jpg", "length": 23691, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_11.jpg", "length": 23662, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_12.jpg", "length": 23473, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_13.jpg", "length": 23871, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_14.jpg", "length": 22772, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_15.jpg", "length": 23421, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_16.jpg", "length": 23469, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_17.jpg", "length": 23604, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_18.jpg", "length": 23459, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_19.jpg", "length": 23596, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_27_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_27_screenshot_20.jpg", "length": 23362, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_00.jpg", "length": 21907, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_01.jpg", "length": 22396, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_02.jpg", "length": 21601, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_03.jpg", "length": 21650, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_04.jpg", "length": 21750, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_05.jpg", "length": 21656, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_06.jpg", "length": 21694, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_07.jpg", "length": 21497, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_08.jpg", "length": 21504, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_09.jpg", "length": 21633, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_10.jpg", "length": 21704, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_11.jpg", "length": 21882, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_12.jpg", "length": 21861, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_13.jpg", "length": 21534, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_14.jpg", "length": 21759, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_15.jpg", "length": 21811, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_16.jpg", "length": 21875, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_17.jpg", "length": 21595, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_18.jpg", "length": 22014, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_19.jpg", "length": 22145, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_20.jpg", "length": 21794, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_28_screenshot_21.jpg", "downloadUrl": "/projects/A001M/files/clusters_28_screenshot_21.jpg", "length": 22029, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_00.jpg", "length": 22078, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_01.jpg", "length": 22594, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_02.jpg", "length": 22732, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_03.jpg", "length": 22787, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_04.jpg", "length": 22417, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_05.jpg", "length": 22495, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_06.jpg", "length": 22402, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_07.jpg", "length": 22971, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_08.jpg", "length": 22724, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_09.jpg", "length": 22385, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_10.jpg", "length": 22822, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_11.jpg", "length": 22105, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_12.jpg", "length": 22195, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_13.jpg", "length": 22492, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_14.jpg", "length": 22790, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_15.jpg", "length": 22725, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_16.jpg", "length": 22636, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_17.jpg", "length": 22953, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_18.jpg", "length": 22708, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_29_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_29_screenshot_19.jpg", "length": 22749, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_00.jpg", "length": 23915, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_01.jpg", "length": 23770, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_02.jpg", "length": 23302, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_03.jpg", "length": 24214, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_04.jpg", "length": 23762, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_05.jpg", "length": 23524, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_06.jpg", "length": 23632, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_07.jpg", "length": 23995, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_08.jpg", "length": 23333, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_09.jpg", "length": 23806, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_10.jpg", "length": 23786, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_11.jpg", "length": 23491, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_12.jpg", "length": 23605, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_13.jpg", "length": 23621, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_14.jpg", "length": 23668, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_15.jpg", "length": 23496, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_16.jpg", "length": 23395, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_30_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_30_screenshot_17.jpg", "length": 23367, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_00.jpg", "length": 22919, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_01.jpg", "length": 23351, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_02.jpg", "length": 23450, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_03.jpg", "length": 23432, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_04.jpg", "length": 23482, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_05.jpg", "length": 23690, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_06.jpg", "length": 23767, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_07.jpg", "length": 23024, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_08.jpg", "length": 22943, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_09.jpg", "length": 23037, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_10.jpg", "length": 23198, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_11.jpg", "length": 22959, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_12.jpg", "length": 23031, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_13.jpg", "length": 23318, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_14.jpg", "length": 23234, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_15.jpg", "length": 23376, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_16.jpg", "length": 23183, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_17.jpg", "length": 22929, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_31_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_31_screenshot_18.jpg", "length": 23064, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_00.jpg", "length": 21676, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_01.jpg", "length": 21637, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_02.jpg", "length": 21029, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_03.jpg", "length": 21903, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_04.jpg", "length": 21344, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_05.jpg", "length": 21300, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_06.jpg", "length": 21303, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_07.jpg", "length": 21137, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_08.jpg", "length": 21828, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_09.jpg", "length": 21338, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_10.jpg", "length": 21520, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_11.jpg", "length": 21426, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_12.jpg", "length": 21421, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_13.jpg", "length": 21491, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_14.jpg", "length": 21566, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_15.jpg", "length": 21429, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_16.jpg", "length": 21535, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_17.jpg", "length": 21553, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_18.jpg", "length": 21544, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_19.jpg", "length": 21522, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_32_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_32_screenshot_20.jpg", "length": 21833, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_00.jpg", "length": 24764, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_01.jpg", "length": 24380, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_02.jpg", "length": 24806, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_03.jpg", "length": 24749, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_04.jpg", "length": 24479, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_05.jpg", "length": 24467, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_06.jpg", "length": 24840, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_07.jpg", "length": 24198, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_08.jpg", "length": 24657, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_09.jpg", "length": 24415, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_10.jpg", "length": 24615, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_11.jpg", "length": 24795, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_12.jpg", "length": 24555, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_13.jpg", "length": 24389, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_14.jpg", "length": 24204, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_15.jpg", "length": 24562, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_16.jpg", "length": 24668, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_17.jpg", "length": 24654, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_18.jpg", "length": 24679, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_19.jpg", "length": 24718, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_33_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_33_screenshot_20.jpg", "length": 24652, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_00.jpg", "length": 23529, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_01.jpg", "length": 23761, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_02.jpg", "length": 24275, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_03.jpg", "length": 23995, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_04.jpg", "length": 23589, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_05.jpg", "length": 23665, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_06.jpg", "length": 23658, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_07.jpg", "length": 23829, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_08.jpg", "length": 23345, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_09.jpg", "length": 23952, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_10.jpg", "length": 23473, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_11.jpg", "length": 24065, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_12.jpg", "length": 24286, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_13.jpg", "length": 23314, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_14.jpg", "length": 24011, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_15.jpg", "length": 23394, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_16.jpg", "length": 23866, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_17.jpg", "length": 24123, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_18.jpg", "length": 23630, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_34_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_34_screenshot_19.jpg", "length": 23696, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_00.jpg", "length": 21855, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_01.jpg", "length": 21238, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_02.jpg", "length": 21457, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_03.jpg", "length": 21521, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_04.jpg", "length": 21477, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_05.jpg", "length": 21467, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_06.jpg", "length": 21255, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_07.jpg", "length": 20977, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_08.jpg", "length": 21088, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_09.jpg", "length": 21278, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_10.jpg", "length": 21139, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_11.jpg", "length": 21314, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_12.jpg", "length": 21239, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_13.jpg", "length": 21594, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_14.jpg", "length": 21424, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_15.jpg", "length": 21581, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_16.jpg", "length": 21197, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_17.jpg", "length": 21004, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_35_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_35_screenshot_18.jpg", "length": 21296, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_00.jpg", "length": 25346, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_01.jpg", "length": 25250, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_02.jpg", "length": 25397, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_03.jpg", "length": 25195, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_04.jpg", "length": 25156, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_05.jpg", "length": 25172, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_06.jpg", "length": 25122, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_07.jpg", "length": 25073, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_08.jpg", "length": 25256, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_09.jpg", "length": 24704, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_10.jpg", "length": 24977, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_11.jpg", "length": 25174, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_12.jpg", "length": 25022, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_13.jpg", "length": 24891, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_14.jpg", "length": 25259, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_15.jpg", "length": 25433, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_16.jpg", "length": 25472, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_17.jpg", "length": 25523, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_36_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_36_screenshot_18.jpg", "length": 24923, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_00.jpg", "length": 22872, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_01.jpg", "length": 23277, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_02.jpg", "length": 23334, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_03.jpg", "length": 23127, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_04.jpg", "length": 22908, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_05.jpg", "length": 23453, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_06.jpg", "length": 22961, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_07.jpg", "length": 22857, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_08.jpg", "length": 23105, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_09.jpg", "length": 23115, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_10.jpg", "length": 22521, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_11.jpg", "length": 23274, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_12.jpg", "length": 23013, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_13.jpg", "length": 22778, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_14.jpg", "length": 23173, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_15.jpg", "length": 23469, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_16.jpg", "length": 23276, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_17.jpg", "length": 23124, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_37_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_37_screenshot_18.jpg", "length": 22971, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_00.jpg", "length": 22492, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_01.jpg", "length": 22643, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_02.jpg", "length": 22907, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_03.jpg", "length": 22936, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_04.jpg", "length": 22688, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_05.jpg", "length": 22140, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_06.jpg", "length": 22886, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_07.jpg", "length": 22798, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_08.jpg", "length": 22338, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_09.jpg", "length": 23019, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_10.jpg", "length": 22382, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_11.jpg", "length": 22446, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_12.jpg", "length": 22417, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_13.jpg", "length": 22259, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_14.jpg", "length": 23067, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_15.jpg", "length": 22578, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_16.jpg", "length": 22898, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_17.jpg", "length": 22134, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_18.jpg", "length": 22337, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_19.jpg", "length": 22381, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_38_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_38_screenshot_20.jpg", "length": 22412, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_00.jpg", "length": 22067, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_01.jpg", "length": 21938, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_02.jpg", "length": 22169, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_03.jpg", "length": 21695, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_04.jpg", "length": 21976, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_05.jpg", "length": 21724, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_06.jpg", "length": 21627, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_07.jpg", "length": 21693, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_08.jpg", "length": 21662, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_09.jpg", "length": 21355, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_10.jpg", "length": 21869, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_11.jpg", "length": 21822, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_12.jpg", "length": 21877, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_13.jpg", "length": 21635, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_14.jpg", "length": 21695, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_15.jpg", "length": 21901, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_16.jpg", "length": 21774, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_17.jpg", "length": 21938, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_18.jpg", "length": 21631, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_39_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_39_screenshot_19.jpg", "length": 21785, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_00.jpg", "length": 22251, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_01.jpg", "length": 21649, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_02.jpg", "length": 21933, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_03.jpg", "length": 21648, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_04.jpg", "length": 21678, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_05.jpg", "length": 21907, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_06.jpg", "length": 21974, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_07.jpg", "length": 21803, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_08.jpg", "length": 21745, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_09.jpg", "length": 22263, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_10.jpg", "length": 21958, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_11.jpg", "length": 21772, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_12.jpg", "length": 21761, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_13.jpg", "length": 21650, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_14.jpg", "length": 21941, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_15.jpg", "length": 21927, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_16.jpg", "length": 22142, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_17.jpg", "length": 21942, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_18.jpg", "length": 22268, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_40_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_40_screenshot_19.jpg", "length": 22013, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_00.jpg", "length": 23199, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_01.jpg", "length": 23324, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_02.jpg", "length": 23523, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_03.jpg", "length": 23540, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_04.jpg", "length": 23435, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_05.jpg", "length": 23387, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_06.jpg", "length": 23496, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_07.jpg", "length": 23036, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_08.jpg", "length": 23808, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_09.jpg", "length": 23261, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_10.jpg", "length": 23510, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_11.jpg", "length": 23191, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_12.jpg", "length": 22955, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_13.jpg", "length": 22970, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_14.jpg", "length": 22985, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_15.jpg", "length": 23326, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_16.jpg", "length": 23570, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_17.jpg", "length": 23297, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_18.jpg", "length": 23244, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_19.jpg", "length": 23287, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_20.jpg", "length": 23048, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_41_screenshot_21.jpg", "downloadUrl": "/projects/A001M/files/clusters_41_screenshot_21.jpg", "length": 23482, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_00.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_00.jpg", "length": 21911, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_01.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_01.jpg", "length": 21769, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_02.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_02.jpg", "length": 21674, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_03.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_03.jpg", "length": 22089, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_04.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_04.jpg", "length": 21787, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_05.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_05.jpg", "length": 22061, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_06.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_06.jpg", "length": 21573, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_07.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_07.jpg", "length": 21336, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_08.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_08.jpg", "length": 22275, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_09.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_09.jpg", "length": 22065, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_10.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_10.jpg", "length": 21888, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_11.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_11.jpg", "length": 21969, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_12.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_12.jpg", "length": 21981, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_13.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_13.jpg", "length": 22068, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_14.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_14.jpg", "length": 22212, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_15.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_15.jpg", "length": 21821, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_16.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_16.jpg", "length": 21453, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_17.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_17.jpg", "length": 21629, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_18.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_18.jpg", "length": 22106, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_19.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_19.jpg", "length": 22030, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_20.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_20.jpg", "length": 22025, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_21.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_21.jpg", "length": 21636, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_22.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_22.jpg", "length": 22178, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "clusters_42_screenshot_23.jpg", "downloadUrl": "/projects/A001M/files/clusters_42_screenshot_23.jpg", "length": 21757, "contentType": "application/octet-stream", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001M/files/pocket_01.pdb", "length": 33165, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001M/files/pocket_02.pdb", "length": 32830, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001M/files/pocket_03.pdb", "length": 12931, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001M/files/pocket_04.pdb", "length": 12730, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001M/files/pocket_05.pdb", "length": 12529, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001M/files/pocket_06.pdb", "length": 12462, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001M/files/pocket_07.pdb", "length": 11859, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001M/files/pocket_08.pdb", "length": 11524, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001M/files/pocket_09.pdb", "length": 11122, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001M/files/pocket_10.pdb", "length": 11055, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5aa8172b156804a52d9f", "md": 0}}]} diff --git a/data/files/A001N/project.json b/data/files/A001N/project.json new file mode 100644 index 0000000000000000000000000000000000000000..4222a7f7f582420c321370068d40387a938c1f17 --- /dev/null +++ b/data/files/A001N/project.json @@ -0,0 +1,321 @@ +{ + "accession": "A001N", + "published": true, + "metadata": { + "NAME": "Dynarepo 1P27", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1P27" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P61326", + "Q9Y5S9" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP", + "ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKP" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Protein mago nashi homolog", + "RNA-binding protein 8A", + "RRM", + "Disordered" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 7628, + "SYSTRES": 472, + "PROTATS": 7628, + "PROTRES": 472, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "chain A-chain C interaction", + "agent_1": "chain A", + "agent_2": "chain C", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain A-chain D interaction", + "agent_1": "chain A", + "agent_2": "chain D", + "selection_1": "chain A", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "chain B-chain C interaction", + "agent_1": "chain B", + "agent_2": "chain C", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain C-chain D interaction", + "agent_1": "chain C", + "agent_2": "chain D", + "selection_1": "chain B", + "selection_2": "chain D", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 11.1136, + "BOXSIZEY": 11.1136, + "BOXSIZEZ": 7.80571, + "mdName": "replica 1", + "mdAtoms": 7628, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_00_screenshot_21.jpg", + "clusters_00_screenshot_22.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "clusters_04_screenshot_00.jpg", + "clusters_04_screenshot_01.jpg", + "clusters_04_screenshot_02.jpg", + "clusters_04_screenshot_03.jpg", + "clusters_04_screenshot_04.jpg", + "clusters_04_screenshot_05.jpg", + "clusters_04_screenshot_06.jpg", + "clusters_04_screenshot_07.jpg", + "clusters_04_screenshot_08.jpg", + "clusters_04_screenshot_09.jpg", + "clusters_04_screenshot_10.jpg", + "clusters_04_screenshot_11.jpg", + "clusters_04_screenshot_12.jpg", + "clusters_04_screenshot_13.jpg", + "clusters_04_screenshot_14.jpg", + "clusters_04_screenshot_15.jpg", + "clusters_04_screenshot_16.jpg", + "clusters_04_screenshot_17.jpg", + "clusters_04_screenshot_18.jpg", + "clusters_04_screenshot_19.jpg", + "clusters_04_screenshot_20.jpg", + "clusters_04_screenshot_21.jpg", + "clusters_05_screenshot_00.jpg", + "clusters_05_screenshot_01.jpg", + "clusters_05_screenshot_02.jpg", + "clusters_05_screenshot_03.jpg", + "clusters_05_screenshot_04.jpg", + "clusters_05_screenshot_05.jpg", + "clusters_05_screenshot_06.jpg", + "clusters_05_screenshot_07.jpg", + "clusters_05_screenshot_08.jpg", + "clusters_05_screenshot_09.jpg", + "clusters_05_screenshot_10.jpg", + "clusters_05_screenshot_11.jpg", + "clusters_05_screenshot_12.jpg", + "clusters_05_screenshot_13.jpg", + "clusters_05_screenshot_14.jpg", + "clusters_05_screenshot_15.jpg", + "clusters_05_screenshot_16.jpg", + "clusters_05_screenshot_17.jpg", + "clusters_05_screenshot_18.jpg", + "clusters_05_screenshot_19.jpg", + "clusters_05_screenshot_20.jpg", + "clusters_05_screenshot_21.jpg", + "clusters_05_screenshot_22.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "clusters-04", + "clusters-05", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f5caf846726452676d0d5", + "creationDate": "2025-06-03T20:35:59.000Z", + "identifier": "A001N" +} \ No newline at end of file diff --git a/data/files/A001N/records.jsonl b/data/files/A001N/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..fd7f8aa46c95f668282061e8f146e1bf9525fc04 --- /dev/null +++ b/data/files/A001N/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001N", "accession": "A001N", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1P27", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1P27"], "FORCED_REFERENCES": null, "REFERENCES": ["P61326", "Q9Y5S9"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP", "ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKP"], "NUCLSEQ": [], "DOMAINS": ["Protein mago nashi homolog", "RNA-binding protein 8A", "RRM", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 7628, "SYSTRES": 472, "PROTATS": 7628, "PROTRES": 472, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain C-chain D interaction", "agent_1": "chain C", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.1136, "BOXSIZEY": 11.1136, "BOXSIZEZ": 7.80571, "mdName": "replica 1", "mdAtoms": 7628, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001N/files/topology.tpr", "length": 2418352, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001N/files/screenshot.jpg", "length": 23269, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001N/files/trajectory.bin", "length": 457771536, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 5001, "atoms": 7628}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_01.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_02.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_03.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_04.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_05.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_06.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_07.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_08.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_09.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_10.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_11.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_12.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_13.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_14.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_15.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_16.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001N/files/structure.pdb", "length": 617903, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001N/files/trajectory.xtc", "length": 145323708, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_00.jpg", "length": 24470, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_01.jpg", "length": 23989, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_02.jpg", "length": 23744, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_03.jpg", "length": 24059, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_04.jpg", "length": 24137, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_05.jpg", "length": 24204, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_06.jpg", "length": 24065, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_07.jpg", "length": 24232, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_08.jpg", "length": 23567, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_09.jpg", "length": 24091, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_10.jpg", "length": 24095, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_11.jpg", "length": 24151, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_12.jpg", "length": 24097, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_13.jpg", "length": 23854, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_14.jpg", "length": 24065, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_15.jpg", "length": 24106, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_16.jpg", "length": 23630, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_17.jpg", "length": 24339, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_18.jpg", "length": 24135, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_19.jpg", "length": 24481, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_20.jpg", "length": 24477, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_21.jpg", "length": 24782, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_22.jpg", "length": 24209, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_00.jpg", "length": 23324, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_01.jpg", "length": 23328, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_02.jpg", "length": 23463, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_03.jpg", "length": 23716, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_04.jpg", "length": 23340, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_05.jpg", "length": 23517, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_06.jpg", "length": 23507, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_07.jpg", "length": 23394, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_08.jpg", "length": 23564, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_09.jpg", "length": 23395, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_10.jpg", "length": 23669, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_11.jpg", "length": 23426, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_12.jpg", "length": 23434, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_13.jpg", "length": 23621, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_14.jpg", "length": 23679, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_15.jpg", "length": 23207, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_16.jpg", "length": 23183, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_17.jpg", "length": 23253, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_18.jpg", "length": 23695, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_00.jpg", "length": 22784, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_01.jpg", "length": 23503, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_02.jpg", "length": 23085, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_03.jpg", "length": 23468, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_04.jpg", "length": 23238, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_05.jpg", "length": 22890, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_06.jpg", "length": 22709, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_07.jpg", "length": 23969, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_08.jpg", "length": 23180, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_09.jpg", "length": 23668, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_10.jpg", "length": 22735, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_11.jpg", "length": 23432, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_12.jpg", "length": 23807, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_13.jpg", "length": 23136, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_14.jpg", "length": 23227, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_15.jpg", "length": 23432, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_16.jpg", "length": 23888, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_17.jpg", "length": 23702, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_00.jpg", "length": 23669, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_01.jpg", "length": 23844, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_02.jpg", "length": 24164, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_03.jpg", "length": 23418, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_04.jpg", "length": 24003, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_05.jpg", "length": 24270, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_06.jpg", "length": 24018, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_07.jpg", "length": 23488, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_08.jpg", "length": 23234, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_09.jpg", "length": 23416, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_10.jpg", "length": 23630, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_11.jpg", "length": 23741, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_12.jpg", "length": 23796, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_13.jpg", "length": 24211, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_14.jpg", "length": 24155, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_15.jpg", "length": 24431, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_16.jpg", "length": 24231, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_17.jpg", "length": 24386, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_18.jpg", "length": 23718, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_19.jpg", "length": 23805, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_00.jpg", "length": 22426, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_01.jpg", "length": 22246, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_02.jpg", "length": 22260, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_03.jpg", "length": 22933, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_04.jpg", "length": 22412, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_05.jpg", "length": 22737, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_06.jpg", "length": 22052, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_07.jpg", "length": 22112, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_08.jpg", "length": 22547, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_09.jpg", "length": 22775, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_10.jpg", "length": 22656, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_11.jpg", "length": 22575, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_12.jpg", "length": 22624, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_13.jpg", "length": 22003, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_14.jpg", "length": 22214, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_15.jpg", "length": 22190, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_16.jpg", "length": 22490, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_17.jpg", "length": 22331, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_18.jpg", "length": 22451, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_19.jpg", "length": 22520, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_20.jpg", "length": 22521, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_21.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_21.jpg", "length": 22526, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_00.jpg", "length": 21373, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_01.jpg", "length": 21508, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_02.jpg", "length": 21215, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_03.jpg", "length": 20797, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_04.jpg", "length": 21512, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_05.jpg", "length": 21615, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_06.jpg", "length": 21286, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_07.jpg", "length": 21524, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_08.jpg", "length": 21725, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_09.jpg", "length": 21435, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_10.jpg", "length": 21786, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_11.jpg", "length": 21100, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_12.jpg", "length": 21867, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_13.jpg", "length": 20923, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_14.jpg", "length": 20885, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_15.jpg", "length": 21278, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_16.jpg", "length": 20788, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_17.jpg", "length": 21084, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_18.jpg", "length": 21191, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_19.jpg", "length": 21313, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_20.jpg", "length": 21739, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_21.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_21.jpg", "length": 21613, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_22.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_22.jpg", "length": 21504, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001N/files/pocket_01.pdb", "length": 46096, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001N/files/pocket_02.pdb", "length": 13199, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001N/files/pocket_03.pdb", "length": 11390, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001N/files/pocket_04.pdb", "length": 11390, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001N/files/pocket_05.pdb", "length": 9112, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001N/files/pocket_06.pdb", "length": 8844, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001N/files/pocket_07.pdb", "length": 8777, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001N/files/pocket_08.pdb", "length": 8308, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001N/files/pocket_09.pdb", "length": 7571, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001N/files/pocket_10.pdb", "length": 7102, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}]} +{"project_identifier": "A001N", "accession": "A001N", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1P27", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1P27"], "FORCED_REFERENCES": null, "REFERENCES": ["P61326", "Q9Y5S9"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP", "ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKP"], "NUCLSEQ": [], "DOMAINS": ["Protein mago nashi homolog", "RNA-binding protein 8A", "RRM", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 7628, "SYSTRES": 472, "PROTATS": 7628, "PROTRES": 472, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain C-chain D interaction", "agent_1": "chain C", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.1136, "BOXSIZEY": 11.1136, "BOXSIZEZ": 7.80571, "mdName": "replica 1", "mdAtoms": 7628, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001N/files/topology.tpr", "length": 2418352, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001N/files/screenshot.jpg", "length": 23269, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001N/files/trajectory.bin", "length": 457771536, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 5001, "atoms": 7628}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_01.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_02.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_03.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_04.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_05.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_06.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_07.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_08.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_09.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_10.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_11.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_12.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_13.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_14.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_15.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_16.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001N/files/structure.pdb", "length": 617903, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001N/files/trajectory.xtc", "length": 145323708, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_00.jpg", "length": 24470, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_01.jpg", "length": 23989, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_02.jpg", "length": 23744, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_03.jpg", "length": 24059, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_04.jpg", "length": 24137, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_05.jpg", "length": 24204, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_06.jpg", "length": 24065, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_07.jpg", "length": 24232, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_08.jpg", "length": 23567, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_09.jpg", "length": 24091, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_10.jpg", "length": 24095, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_11.jpg", "length": 24151, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_12.jpg", "length": 24097, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_13.jpg", "length": 23854, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_14.jpg", "length": 24065, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_15.jpg", "length": 24106, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_16.jpg", "length": 23630, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_17.jpg", "length": 24339, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_18.jpg", "length": 24135, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_19.jpg", "length": 24481, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_20.jpg", "length": 24477, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_21.jpg", "length": 24782, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_22.jpg", "length": 24209, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_00.jpg", "length": 23324, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_01.jpg", "length": 23328, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_02.jpg", "length": 23463, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_03.jpg", "length": 23716, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_04.jpg", "length": 23340, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_05.jpg", "length": 23517, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_06.jpg", "length": 23507, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_07.jpg", "length": 23394, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_08.jpg", "length": 23564, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_09.jpg", "length": 23395, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_10.jpg", "length": 23669, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_11.jpg", "length": 23426, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_12.jpg", "length": 23434, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_13.jpg", "length": 23621, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_14.jpg", "length": 23679, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_15.jpg", "length": 23207, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_16.jpg", "length": 23183, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_17.jpg", "length": 23253, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_18.jpg", "length": 23695, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_00.jpg", "length": 22784, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_01.jpg", "length": 23503, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_02.jpg", "length": 23085, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_03.jpg", "length": 23468, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_04.jpg", "length": 23238, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_05.jpg", "length": 22890, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_06.jpg", "length": 22709, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_07.jpg", "length": 23969, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_08.jpg", "length": 23180, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_09.jpg", "length": 23668, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_10.jpg", "length": 22735, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_11.jpg", "length": 23432, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_12.jpg", "length": 23807, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_13.jpg", "length": 23136, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_14.jpg", "length": 23227, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_15.jpg", "length": 23432, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_16.jpg", "length": 23888, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_17.jpg", "length": 23702, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_00.jpg", "length": 23669, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_01.jpg", "length": 23844, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_02.jpg", "length": 24164, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_03.jpg", "length": 23418, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_04.jpg", "length": 24003, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_05.jpg", "length": 24270, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_06.jpg", "length": 24018, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_07.jpg", "length": 23488, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_08.jpg", "length": 23234, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_09.jpg", "length": 23416, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_10.jpg", "length": 23630, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_11.jpg", "length": 23741, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_12.jpg", "length": 23796, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_13.jpg", "length": 24211, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_14.jpg", "length": 24155, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_15.jpg", "length": 24431, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_16.jpg", "length": 24231, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_17.jpg", "length": 24386, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_18.jpg", "length": 23718, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_19.jpg", "length": 23805, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_00.jpg", "length": 22426, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_01.jpg", "length": 22246, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_02.jpg", "length": 22260, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_03.jpg", "length": 22933, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_04.jpg", "length": 22412, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_05.jpg", "length": 22737, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_06.jpg", "length": 22052, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_07.jpg", "length": 22112, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_08.jpg", "length": 22547, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_09.jpg", "length": 22775, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_10.jpg", "length": 22656, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_11.jpg", "length": 22575, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_12.jpg", "length": 22624, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_13.jpg", "length": 22003, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_14.jpg", "length": 22214, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_15.jpg", "length": 22190, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_16.jpg", "length": 22490, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_17.jpg", "length": 22331, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_18.jpg", "length": 22451, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_19.jpg", "length": 22520, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_20.jpg", "length": 22521, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_21.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_21.jpg", "length": 22526, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_00.jpg", "length": 21373, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_01.jpg", "length": 21508, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_02.jpg", "length": 21215, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_03.jpg", "length": 20797, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_04.jpg", "length": 21512, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_05.jpg", "length": 21615, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_06.jpg", "length": 21286, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_07.jpg", "length": 21524, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_08.jpg", "length": 21725, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_09.jpg", "length": 21435, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_10.jpg", "length": 21786, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_11.jpg", "length": 21100, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_12.jpg", "length": 21867, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_13.jpg", "length": 20923, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_14.jpg", "length": 20885, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_15.jpg", "length": 21278, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_16.jpg", "length": 20788, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_17.jpg", "length": 21084, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_18.jpg", "length": 21191, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_19.jpg", "length": 21313, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_20.jpg", "length": 21739, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_21.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_21.jpg", "length": 21613, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_22.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_22.jpg", "length": 21504, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001N/files/pocket_01.pdb", "length": 46096, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001N/files/pocket_02.pdb", "length": 13199, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001N/files/pocket_03.pdb", "length": 11390, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001N/files/pocket_04.pdb", "length": 11390, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001N/files/pocket_05.pdb", "length": 9112, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001N/files/pocket_06.pdb", "length": 8844, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001N/files/pocket_07.pdb", "length": 8777, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001N/files/pocket_08.pdb", "length": 8308, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001N/files/pocket_09.pdb", "length": 7571, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001N/files/pocket_10.pdb", "length": 7102, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}]} +{"project_identifier": "A001N", "accession": "A001N", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1P27", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1P27"], "FORCED_REFERENCES": null, "REFERENCES": ["P61326", "Q9Y5S9"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP", "ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKP"], "NUCLSEQ": [], "DOMAINS": ["Protein mago nashi homolog", "RNA-binding protein 8A", "RRM", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 7628, "SYSTRES": 472, "PROTATS": 7628, "PROTRES": 472, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain C-chain D interaction", "agent_1": "chain C", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.1136, "BOXSIZEY": 11.1136, "BOXSIZEZ": 7.80571, "mdName": "replica 1", "mdAtoms": 7628, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001N/files/topology.tpr", "length": 2418352, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001N/files/screenshot.jpg", "length": 23269, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001N/files/trajectory.bin", "length": 457771536, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 5001, "atoms": 7628}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_01.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_02.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_03.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_04.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_05.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_06.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_07.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_08.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_09.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_10.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_11.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_12.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_13.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_14.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_15.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001N/files/pca_trajectory_16.bin", "length": 339840, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0, "frames": 20, "atoms": 1416}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001N/files/structure.pdb", "length": 617903, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001N/files/trajectory.xtc", "length": 145323708, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_00.jpg", "length": 24470, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_01.jpg", "length": 23989, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_02.jpg", "length": 23744, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_03.jpg", "length": 24059, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_04.jpg", "length": 24137, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_05.jpg", "length": 24204, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_06.jpg", "length": 24065, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_07.jpg", "length": 24232, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_08.jpg", "length": 23567, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_09.jpg", "length": 24091, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_10.jpg", "length": 24095, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_11.jpg", "length": 24151, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_12.jpg", "length": 24097, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_13.jpg", "length": 23854, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_14.jpg", "length": 24065, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_15.jpg", "length": 24106, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_16.jpg", "length": 23630, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_17.jpg", "length": 24339, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_18.jpg", "length": 24135, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_19.jpg", "length": 24481, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_20.jpg", "length": 24477, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_21.jpg", "length": 24782, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_00_screenshot_22.jpg", "downloadUrl": "/projects/A001N/files/clusters_00_screenshot_22.jpg", "length": 24209, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_00.jpg", "length": 23324, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_01.jpg", "length": 23328, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_02.jpg", "length": 23463, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_03.jpg", "length": 23716, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_04.jpg", "length": 23340, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_05.jpg", "length": 23517, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_06.jpg", "length": 23507, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_07.jpg", "length": 23394, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_08.jpg", "length": 23564, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_09.jpg", "length": 23395, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_10.jpg", "length": 23669, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_11.jpg", "length": 23426, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_12.jpg", "length": 23434, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_13.jpg", "length": 23621, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_14.jpg", "length": 23679, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_15.jpg", "length": 23207, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_16.jpg", "length": 23183, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_17.jpg", "length": 23253, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_01_screenshot_18.jpg", "length": 23695, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_00.jpg", "length": 22784, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_01.jpg", "length": 23503, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_02.jpg", "length": 23085, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_03.jpg", "length": 23468, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_04.jpg", "length": 23238, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_05.jpg", "length": 22890, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_06.jpg", "length": 22709, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_07.jpg", "length": 23969, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_08.jpg", "length": 23180, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_09.jpg", "length": 23668, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_10.jpg", "length": 22735, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_11.jpg", "length": 23432, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_12.jpg", "length": 23807, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_13.jpg", "length": 23136, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_14.jpg", "length": 23227, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_15.jpg", "length": 23432, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_16.jpg", "length": 23888, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_02_screenshot_17.jpg", "length": 23702, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_00.jpg", "length": 23669, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_01.jpg", "length": 23844, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_02.jpg", "length": 24164, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_03.jpg", "length": 23418, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_04.jpg", "length": 24003, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_05.jpg", "length": 24270, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_06.jpg", "length": 24018, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_07.jpg", "length": 23488, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_08.jpg", "length": 23234, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_09.jpg", "length": 23416, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_10.jpg", "length": 23630, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_11.jpg", "length": 23741, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_12.jpg", "length": 23796, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_13.jpg", "length": 24211, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_14.jpg", "length": 24155, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_15.jpg", "length": 24431, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_16.jpg", "length": 24231, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_17.jpg", "length": 24386, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_18.jpg", "length": 23718, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_03_screenshot_19.jpg", "length": 23805, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_00.jpg", "length": 22426, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_01.jpg", "length": 22246, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_02.jpg", "length": 22260, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_03.jpg", "length": 22933, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_04.jpg", "length": 22412, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_05.jpg", "length": 22737, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_06.jpg", "length": 22052, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_07.jpg", "length": 22112, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_08.jpg", "length": 22547, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_09.jpg", "length": 22775, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_10.jpg", "length": 22656, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_11.jpg", "length": 22575, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_12.jpg", "length": 22624, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_13.jpg", "length": 22003, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_14.jpg", "length": 22214, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_15.jpg", "length": 22190, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_16.jpg", "length": 22490, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_17.jpg", "length": 22331, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_18.jpg", "length": 22451, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_19.jpg", "length": 22520, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_20.jpg", "length": 22521, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_04_screenshot_21.jpg", "downloadUrl": "/projects/A001N/files/clusters_04_screenshot_21.jpg", "length": 22526, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_00.jpg", "length": 21373, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_01.jpg", "length": 21508, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_02.jpg", "length": 21215, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_03.jpg", "length": 20797, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_04.jpg", "length": 21512, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_05.jpg", "length": 21615, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_06.jpg", "length": 21286, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_07.jpg", "length": 21524, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_08.jpg", "length": 21725, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_09.jpg", "length": 21435, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_10.jpg", "length": 21786, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_11.jpg", "length": 21100, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_12.jpg", "length": 21867, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_13.jpg", "length": 20923, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_14.jpg", "length": 20885, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_15.jpg", "length": 21278, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_16.jpg", "length": 20788, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_17.jpg", "length": 21084, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_18.jpg", "length": 21191, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_19.jpg", "length": 21313, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_20.jpg", "length": 21739, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_21.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_21.jpg", "length": 21613, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "clusters_05_screenshot_22.jpg", "downloadUrl": "/projects/A001N/files/clusters_05_screenshot_22.jpg", "length": 21504, "contentType": "application/octet-stream", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001N/files/pocket_01.pdb", "length": 46096, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001N/files/pocket_02.pdb", "length": 13199, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001N/files/pocket_03.pdb", "length": 11390, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001N/files/pocket_04.pdb", "length": 11390, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001N/files/pocket_05.pdb", "length": 9112, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001N/files/pocket_06.pdb", "length": 8844, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001N/files/pocket_07.pdb", "length": 8777, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001N/files/pocket_08.pdb", "length": 8308, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001N/files/pocket_09.pdb", "length": 7571, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001N/files/pocket_10.pdb", "length": 7102, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5caf846726452676d0d5", "md": 0}}]} diff --git a/data/files/A001O/project.json b/data/files/A001O/project.json new file mode 100644 index 0000000000000000000000000000000000000000..e076c2024fad221f928964207c2346aa59258db7 --- /dev/null +++ b/data/files/A001O/project.json @@ -0,0 +1,193 @@ +{ + "accession": "A001O", + "published": true, + "metadata": { + "NAME": "Dynarepo 1PK1", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1PK1" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P39769", + "Q9VHA0" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "RSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNKVN", + "PPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLLLKEKHLVNAMGMKLGPARKIVAKVESIK" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Polyhomeotic-proximal chromatin protein", + "SAM", + "Polycomb protein Scm", + "SAM" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 2227, + "SYSTRES": 138, + "PROTATS": 2227, + "PROTRES": 138, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 8.25064, + "BOXSIZEY": 8.25064, + "BOXSIZEZ": 5.80971, + "mdName": "replica 1", + "mdAtoms": 2227, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f5e0ee3f97e7302018bec", + "creationDate": "2025-06-03T20:41:50.000Z", + "identifier": "A001O" +} \ No newline at end of file diff --git a/data/files/A001O/records.jsonl b/data/files/A001O/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..06a13bed4c52a45fc93cfde4a888ad7689604b6d --- /dev/null +++ b/data/files/A001O/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001O", "accession": "A001O", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1PK1", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1PK1"], "FORCED_REFERENCES": null, "REFERENCES": ["P39769", "Q9VHA0"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["RSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNKVN", "PPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLLLKEKHLVNAMGMKLGPARKIVAKVESIK"], "NUCLSEQ": [], "DOMAINS": ["Polyhomeotic-proximal chromatin protein", "SAM", "Polycomb protein Scm", "SAM"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 2227, "SYSTRES": 138, "PROTATS": 2227, "PROTRES": 138, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.25064, "BOXSIZEY": 8.25064, "BOXSIZEZ": 5.80971, "mdName": "replica 1", "mdAtoms": 2227, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001O/files/topology.tpr", "length": 908852, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001O/files/screenshot.jpg", "length": 18389, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001O/files/trajectory.bin", "length": 133646724, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 5001, "atoms": 2227}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_01.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_02.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_03.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_04.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_05.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_06.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_07.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_08.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_09.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_10.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_11.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_12.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_13.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_14.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_15.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_16.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001O/files/structure.pdb", "length": 180422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001O/files/trajectory.xtc", "length": 42618592, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_00.jpg", "length": 18116, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_01.jpg", "length": 18159, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_02.jpg", "length": 18530, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_03.jpg", "length": 18248, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_04.jpg", "length": 18364, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_05.jpg", "length": 17424, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_06.jpg", "length": 18279, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_07.jpg", "length": 18548, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_08.jpg", "length": 18253, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_09.jpg", "length": 18465, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_10.jpg", "length": 18323, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_11.jpg", "length": 18425, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_12.jpg", "length": 18565, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_13.jpg", "length": 19022, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_14.jpg", "length": 18515, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_15.jpg", "length": 18201, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_16.jpg", "length": 18420, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_17.jpg", "length": 18064, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_18.jpg", "length": 18137, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_19.jpg", "length": 18108, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_00.jpg", "length": 18279, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_01.jpg", "length": 18232, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_02.jpg", "length": 17920, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_03.jpg", "length": 18354, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_04.jpg", "length": 18348, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_05.jpg", "length": 18210, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_06.jpg", "length": 18467, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_07.jpg", "length": 18900, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_08.jpg", "length": 18326, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_09.jpg", "length": 19000, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_10.jpg", "length": 18589, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_11.jpg", "length": 18710, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_12.jpg", "length": 18220, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_13.jpg", "length": 18477, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_14.jpg", "length": 18714, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_15.jpg", "length": 19204, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_16.jpg", "length": 18789, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_17.jpg", "length": 18186, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_18.jpg", "length": 18502, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001O/files/pocket_01.pdb", "length": 8174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001O/files/pocket_02.pdb", "length": 5896, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001O/files/pocket_03.pdb", "length": 3685, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001O/files/pocket_04.pdb", "length": 3417, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}]} +{"project_identifier": "A001O", "accession": "A001O", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1PK1", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1PK1"], "FORCED_REFERENCES": null, "REFERENCES": ["P39769", "Q9VHA0"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["RSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNKVN", "PPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLLLKEKHLVNAMGMKLGPARKIVAKVESIK"], "NUCLSEQ": [], "DOMAINS": ["Polyhomeotic-proximal chromatin protein", "SAM", "Polycomb protein Scm", "SAM"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 2227, "SYSTRES": 138, "PROTATS": 2227, "PROTRES": 138, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.25064, "BOXSIZEY": 8.25064, "BOXSIZEZ": 5.80971, "mdName": "replica 1", "mdAtoms": 2227, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001O/files/topology.tpr", "length": 908852, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001O/files/screenshot.jpg", "length": 18389, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001O/files/trajectory.bin", "length": 133646724, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 5001, "atoms": 2227}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_01.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_02.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_03.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_04.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_05.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_06.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_07.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_08.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_09.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_10.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_11.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_12.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_13.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_14.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_15.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_16.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001O/files/structure.pdb", "length": 180422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001O/files/trajectory.xtc", "length": 42618592, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_00.jpg", "length": 18116, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_01.jpg", "length": 18159, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_02.jpg", "length": 18530, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_03.jpg", "length": 18248, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_04.jpg", "length": 18364, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_05.jpg", "length": 17424, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_06.jpg", "length": 18279, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_07.jpg", "length": 18548, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_08.jpg", "length": 18253, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_09.jpg", "length": 18465, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_10.jpg", "length": 18323, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_11.jpg", "length": 18425, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_12.jpg", "length": 18565, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_13.jpg", "length": 19022, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_14.jpg", "length": 18515, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_15.jpg", "length": 18201, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_16.jpg", "length": 18420, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_17.jpg", "length": 18064, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_18.jpg", "length": 18137, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_19.jpg", "length": 18108, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_00.jpg", "length": 18279, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_01.jpg", "length": 18232, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_02.jpg", "length": 17920, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_03.jpg", "length": 18354, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_04.jpg", "length": 18348, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_05.jpg", "length": 18210, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_06.jpg", "length": 18467, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_07.jpg", "length": 18900, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_08.jpg", "length": 18326, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_09.jpg", "length": 19000, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_10.jpg", "length": 18589, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_11.jpg", "length": 18710, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_12.jpg", "length": 18220, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_13.jpg", "length": 18477, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_14.jpg", "length": 18714, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_15.jpg", "length": 19204, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_16.jpg", "length": 18789, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_17.jpg", "length": 18186, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_18.jpg", "length": 18502, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001O/files/pocket_01.pdb", "length": 8174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001O/files/pocket_02.pdb", "length": 5896, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001O/files/pocket_03.pdb", "length": 3685, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001O/files/pocket_04.pdb", "length": 3417, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}]} +{"project_identifier": "A001O", "accession": "A001O", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1PK1", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1PK1"], "FORCED_REFERENCES": null, "REFERENCES": ["P39769", "Q9VHA0"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["RSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNKVN", "PPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLLLKEKHLVNAMGMKLGPARKIVAKVESIK"], "NUCLSEQ": [], "DOMAINS": ["Polyhomeotic-proximal chromatin protein", "SAM", "Polycomb protein Scm", "SAM"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 2227, "SYSTRES": 138, "PROTATS": 2227, "PROTRES": 138, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.25064, "BOXSIZEY": 8.25064, "BOXSIZEZ": 5.80971, "mdName": "replica 1", "mdAtoms": 2227, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001O/files/topology.tpr", "length": 908852, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001O/files/screenshot.jpg", "length": 18389, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001O/files/trajectory.bin", "length": 133646724, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 5001, "atoms": 2227}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_01.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_02.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_03.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_04.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_05.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_06.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_07.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_08.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_09.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_10.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_11.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_12.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_13.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_14.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_15.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001O/files/pca_trajectory_16.bin", "length": 99360, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0, "frames": 20, "atoms": 414}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001O/files/structure.pdb", "length": 180422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001O/files/trajectory.xtc", "length": 42618592, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_00.jpg", "length": 18116, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_01.jpg", "length": 18159, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_02.jpg", "length": 18530, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_03.jpg", "length": 18248, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_04.jpg", "length": 18364, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_05.jpg", "length": 17424, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_06.jpg", "length": 18279, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_07.jpg", "length": 18548, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_08.jpg", "length": 18253, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_09.jpg", "length": 18465, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_10.jpg", "length": 18323, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_11.jpg", "length": 18425, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_12.jpg", "length": 18565, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_13.jpg", "length": 19022, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_14.jpg", "length": 18515, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_15.jpg", "length": 18201, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_16.jpg", "length": 18420, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_17.jpg", "length": 18064, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_18.jpg", "length": 18137, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001O/files/clusters_00_screenshot_19.jpg", "length": 18108, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_00.jpg", "length": 18279, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_01.jpg", "length": 18232, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_02.jpg", "length": 17920, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_03.jpg", "length": 18354, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_04.jpg", "length": 18348, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_05.jpg", "length": 18210, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_06.jpg", "length": 18467, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_07.jpg", "length": 18900, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_08.jpg", "length": 18326, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_09.jpg", "length": 19000, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_10.jpg", "length": 18589, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_11.jpg", "length": 18710, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_12.jpg", "length": 18220, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_13.jpg", "length": 18477, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_14.jpg", "length": 18714, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_15.jpg", "length": 19204, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_16.jpg", "length": 18789, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_17.jpg", "length": 18186, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001O/files/clusters_01_screenshot_18.jpg", "length": 18502, "contentType": "application/octet-stream", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001O/files/pocket_01.pdb", "length": 8174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001O/files/pocket_02.pdb", "length": 5896, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001O/files/pocket_03.pdb", "length": 3685, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001O/files/pocket_04.pdb", "length": 3417, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5e0ee3f97e7302018bec", "md": 0}}]} diff --git a/data/files/A001P/project.json b/data/files/A001P/project.json new file mode 100644 index 0000000000000000000000000000000000000000..161a2cacbd8abf6118c0303fd96789e338be3bea --- /dev/null +++ b/data/files/A001P/project.json @@ -0,0 +1,186 @@ +{ + "accession": "A001P", + "published": true, + "metadata": { + "NAME": "Dynarepo 1PVH", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1PVH" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P40189", + "P15018" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "GLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE", + "CAIRHPCHNNLMNQIRSQLAQLNGSANALFILYYTAQGEPFPNNLDKLCGPNVTDFPPFHANGTEKAKLVELYRIVVYLGTSLGNITRDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGHVDVTYGPDTSGKDVFQKKKLGCQLLGKYKQIIAVLAQAF" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Interleukin-6 receptor subunit beta", + "Fibronectin type-III 1", + "Fibronectin type-III 2", + "WSXWS motif", + "Leukemia inhibitory factor" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 5843, + "SYSTRES": 370, + "PROTATS": 5843, + "PROTRES": 370, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 10.4882, + "BOXSIZEY": 10.4882, + "BOXSIZEZ": 7.39659, + "mdName": "replica 1", + "mdAtoms": 5843, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f5f2c1333c6d964d8bcdc", + "creationDate": "2025-06-03T20:46:36.000Z", + "identifier": "A001P" +} \ No newline at end of file diff --git a/data/files/A001P/records.jsonl b/data/files/A001P/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..1c9fd0780ae10d08e15634308b28268e6fd76dd1 --- /dev/null +++ b/data/files/A001P/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001P", "accession": "A001P", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1PVH", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1PVH"], "FORCED_REFERENCES": null, "REFERENCES": ["P40189", "P15018"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE", "CAIRHPCHNNLMNQIRSQLAQLNGSANALFILYYTAQGEPFPNNLDKLCGPNVTDFPPFHANGTEKAKLVELYRIVVYLGTSLGNITRDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGHVDVTYGPDTSGKDVFQKKKLGCQLLGKYKQIIAVLAQAF"], "NUCLSEQ": [], "DOMAINS": ["Interleukin-6 receptor subunit beta", "Fibronectin type-III 1", "Fibronectin type-III 2", "WSXWS motif", "Leukemia inhibitory factor"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 5843, "SYSTRES": 370, "PROTATS": 5843, "PROTRES": 370, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.4882, "BOXSIZEY": 10.4882, "BOXSIZEZ": 7.39659, "mdName": "replica 1", "mdAtoms": 5843, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001P/files/topology.tpr", "length": 1919068, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001P/files/screenshot.jpg", "length": 25119, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001P/files/trajectory.bin", "length": 350650116, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 5001, "atoms": 5843}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_01.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_02.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_03.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_04.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_05.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_06.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_07.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_08.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001P/files/structure.pdb", "length": 473318, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001P/files/trajectory.xtc", "length": 111597768, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_00.jpg", "length": 23624, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_01.jpg", "length": 22296, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_02.jpg", "length": 24164, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_03.jpg", "length": 25066, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_04.jpg", "length": 23484, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_05.jpg", "length": 22861, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_06.jpg", "length": 22601, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_07.jpg", "length": 22932, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_08.jpg", "length": 23448, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_09.jpg", "length": 23119, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_10.jpg", "length": 23910, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_11.jpg", "length": 23818, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_12.jpg", "length": 24189, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_13.jpg", "length": 23310, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_14.jpg", "length": 23775, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_15.jpg", "length": 22398, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_16.jpg", "length": 24059, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_17.jpg", "length": 22892, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_18.jpg", "length": 23659, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_19.jpg", "length": 23958, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_20.jpg", "length": 24253, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_00.jpg", "length": 22290, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_01.jpg", "length": 23449, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_02.jpg", "length": 23182, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_03.jpg", "length": 23354, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_04.jpg", "length": 22112, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_05.jpg", "length": 22727, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_06.jpg", "length": 22256, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_07.jpg", "length": 22417, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_08.jpg", "length": 22331, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_09.jpg", "length": 22775, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_10.jpg", "length": 23716, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_11.jpg", "length": 23423, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_12.jpg", "length": 23375, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_13.jpg", "length": 23642, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_14.jpg", "length": 23757, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_15.jpg", "length": 23656, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_16.jpg", "length": 23001, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_17.jpg", "length": 22807, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_18.jpg", "length": 22870, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_19.jpg", "length": 23136, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001P/files/pocket_01.pdb", "length": 13802, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001P/files/pocket_02.pdb", "length": 9380, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}]} +{"project_identifier": "A001P", "accession": "A001P", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1PVH", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1PVH"], "FORCED_REFERENCES": null, "REFERENCES": ["P40189", "P15018"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE", "CAIRHPCHNNLMNQIRSQLAQLNGSANALFILYYTAQGEPFPNNLDKLCGPNVTDFPPFHANGTEKAKLVELYRIVVYLGTSLGNITRDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGHVDVTYGPDTSGKDVFQKKKLGCQLLGKYKQIIAVLAQAF"], "NUCLSEQ": [], "DOMAINS": ["Interleukin-6 receptor subunit beta", "Fibronectin type-III 1", "Fibronectin type-III 2", "WSXWS motif", "Leukemia inhibitory factor"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 5843, "SYSTRES": 370, "PROTATS": 5843, "PROTRES": 370, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.4882, "BOXSIZEY": 10.4882, "BOXSIZEZ": 7.39659, "mdName": "replica 1", "mdAtoms": 5843, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001P/files/topology.tpr", "length": 1919068, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001P/files/screenshot.jpg", "length": 25119, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001P/files/trajectory.bin", "length": 350650116, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 5001, "atoms": 5843}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_01.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_02.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_03.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_04.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_05.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_06.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_07.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_08.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001P/files/structure.pdb", "length": 473318, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001P/files/trajectory.xtc", "length": 111597768, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_00.jpg", "length": 23624, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_01.jpg", "length": 22296, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_02.jpg", "length": 24164, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_03.jpg", "length": 25066, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_04.jpg", "length": 23484, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_05.jpg", "length": 22861, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_06.jpg", "length": 22601, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_07.jpg", "length": 22932, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_08.jpg", "length": 23448, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_09.jpg", "length": 23119, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_10.jpg", "length": 23910, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_11.jpg", "length": 23818, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_12.jpg", "length": 24189, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_13.jpg", "length": 23310, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_14.jpg", "length": 23775, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_15.jpg", "length": 22398, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_16.jpg", "length": 24059, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_17.jpg", "length": 22892, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_18.jpg", "length": 23659, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_19.jpg", "length": 23958, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_20.jpg", "length": 24253, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_00.jpg", "length": 22290, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_01.jpg", "length": 23449, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_02.jpg", "length": 23182, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_03.jpg", "length": 23354, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_04.jpg", "length": 22112, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_05.jpg", "length": 22727, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_06.jpg", "length": 22256, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_07.jpg", "length": 22417, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_08.jpg", "length": 22331, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_09.jpg", "length": 22775, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_10.jpg", "length": 23716, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_11.jpg", "length": 23423, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_12.jpg", "length": 23375, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_13.jpg", "length": 23642, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_14.jpg", "length": 23757, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_15.jpg", "length": 23656, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_16.jpg", "length": 23001, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_17.jpg", "length": 22807, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_18.jpg", "length": 22870, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_19.jpg", "length": 23136, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001P/files/pocket_01.pdb", "length": 13802, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001P/files/pocket_02.pdb", "length": 9380, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}]} +{"project_identifier": "A001P", "accession": "A001P", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1PVH", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1PVH"], "FORCED_REFERENCES": null, "REFERENCES": ["P40189", "P15018"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE", "CAIRHPCHNNLMNQIRSQLAQLNGSANALFILYYTAQGEPFPNNLDKLCGPNVTDFPPFHANGTEKAKLVELYRIVVYLGTSLGNITRDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGHVDVTYGPDTSGKDVFQKKKLGCQLLGKYKQIIAVLAQAF"], "NUCLSEQ": [], "DOMAINS": ["Interleukin-6 receptor subunit beta", "Fibronectin type-III 1", "Fibronectin type-III 2", "WSXWS motif", "Leukemia inhibitory factor"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 5843, "SYSTRES": 370, "PROTATS": 5843, "PROTRES": 370, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 10.4882, "BOXSIZEY": 10.4882, "BOXSIZEZ": 7.39659, "mdName": "replica 1", "mdAtoms": 5843, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001P/files/topology.tpr", "length": 1919068, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001P/files/screenshot.jpg", "length": 25119, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001P/files/trajectory.bin", "length": 350650116, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 5001, "atoms": 5843}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_01.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_02.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_03.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_04.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_05.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_06.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_07.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001P/files/pca_trajectory_08.bin", "length": 266400, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0, "frames": 20, "atoms": 1110}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001P/files/structure.pdb", "length": 473318, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001P/files/trajectory.xtc", "length": 111597768, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_00.jpg", "length": 23624, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_01.jpg", "length": 22296, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_02.jpg", "length": 24164, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_03.jpg", "length": 25066, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_04.jpg", "length": 23484, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_05.jpg", "length": 22861, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_06.jpg", "length": 22601, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_07.jpg", "length": 22932, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_08.jpg", "length": 23448, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_09.jpg", "length": 23119, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_10.jpg", "length": 23910, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_11.jpg", "length": 23818, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_12.jpg", "length": 24189, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_13.jpg", "length": 23310, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_14.jpg", "length": 23775, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_15.jpg", "length": 22398, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_16.jpg", "length": 24059, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_17.jpg", "length": 22892, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_18.jpg", "length": 23659, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_19.jpg", "length": 23958, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001P/files/clusters_00_screenshot_20.jpg", "length": 24253, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_00.jpg", "length": 22290, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_01.jpg", "length": 23449, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_02.jpg", "length": 23182, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_03.jpg", "length": 23354, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_04.jpg", "length": 22112, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_05.jpg", "length": 22727, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_06.jpg", "length": 22256, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_07.jpg", "length": 22417, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_08.jpg", "length": 22331, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_09.jpg", "length": 22775, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_10.jpg", "length": 23716, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_11.jpg", "length": 23423, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_12.jpg", "length": 23375, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_13.jpg", "length": 23642, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_14.jpg", "length": 23757, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_15.jpg", "length": 23656, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_16.jpg", "length": 23001, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_17.jpg", "length": 22807, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_18.jpg", "length": 22870, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001P/files/clusters_01_screenshot_19.jpg", "length": 23136, "contentType": "application/octet-stream", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001P/files/pocket_01.pdb", "length": 13802, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001P/files/pocket_02.pdb", "length": 9380, "contentType": "chemical/x-pdb", "metadata": {"project": "683f5f2c1333c6d964d8bcdc", "md": 0}}]} diff --git a/data/files/A001Q/project.json b/data/files/A001Q/project.json new file mode 100644 index 0000000000000000000000000000000000000000..603739b78c31b579ec4a85b15a2a4fea36ce6a0c --- /dev/null +++ b/data/files/A001Q/project.json @@ -0,0 +1,191 @@ +{ + "accession": "A001Q", + "published": true, + "metadata": { + "NAME": "Dynarepo 1PXV", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1PXV" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P0C1S6", + "Q9EYW6" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "GSMYQLQFINLVYDTTKLTHLEQTNINLFIGNWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQRIKFSSFDNEEIIYILDYDDTQHILMQTSSKQGIGTSRPIVYERLV", + "GHHHHHHEFDQVQYENTLKNFKIREQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Staphopain B", + "Cleavage; by SspA", + "Staphostatin B", + "Binds to staphopain B" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 4670, + "SYSTRES": 294, + "PROTATS": 4670, + "PROTRES": 294, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 9.07669, + "BOXSIZEY": 9.07669, + "BOXSIZEZ": 6.43223, + "mdName": "replica 1", + "mdAtoms": 4670, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f6091ccf553fe0b0d92b4", + "creationDate": "2025-06-03T20:52:33.000Z", + "identifier": "A001Q" +} \ No newline at end of file diff --git a/data/files/A001Q/records.jsonl b/data/files/A001Q/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..b9b7e16b29164a7396c55d2270f4c372cb6ea907 --- /dev/null +++ b/data/files/A001Q/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001Q", "accession": "A001Q", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1PXV", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1PXV"], "FORCED_REFERENCES": null, "REFERENCES": ["P0C1S6", "Q9EYW6"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GSMYQLQFINLVYDTTKLTHLEQTNINLFIGNWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQRIKFSSFDNEEIIYILDYDDTQHILMQTSSKQGIGTSRPIVYERLV", "GHHHHHHEFDQVQYENTLKNFKIREQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY"], "NUCLSEQ": [], "DOMAINS": ["Staphopain B", "Cleavage; by SspA", "Staphostatin B", "Binds to staphopain B"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4670, "SYSTRES": 294, "PROTATS": 4670, "PROTRES": 294, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.07669, "BOXSIZEY": 9.07669, "BOXSIZEZ": 6.43223, "mdName": "replica 1", "mdAtoms": 4670, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001Q/files/topology.tpr", "length": 1554536, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001Q/files/screenshot.jpg", "length": 23225, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001Q/files/trajectory.bin", "length": 280256040, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 5001, "atoms": 4670}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_01.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_02.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_03.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_04.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_05.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_06.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_07.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_08.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_09.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_10.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_11.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_12.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001Q/files/structure.pdb", "length": 378305, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001Q/files/trajectory.xtc", "length": 89046380, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_00.jpg", "length": 24017, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_01.jpg", "length": 23824, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_02.jpg", "length": 23962, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_03.jpg", "length": 24755, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_04.jpg", "length": 23850, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_05.jpg", "length": 23615, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_06.jpg", "length": 24245, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_07.jpg", "length": 23957, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_08.jpg", "length": 23737, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_09.jpg", "length": 23754, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_10.jpg", "length": 24217, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_11.jpg", "length": 23827, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_12.jpg", "length": 23467, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_13.jpg", "length": 23858, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_14.jpg", "length": 23830, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_15.jpg", "length": 23620, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_16.jpg", "length": 23772, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_17.jpg", "length": 24141, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_18.jpg", "length": 24882, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_00.jpg", "length": 23161, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_01.jpg", "length": 23342, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_02.jpg", "length": 23039, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_03.jpg", "length": 23556, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_04.jpg", "length": 23381, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_05.jpg", "length": 23437, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_06.jpg", "length": 23494, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_07.jpg", "length": 23168, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_08.jpg", "length": 23052, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_09.jpg", "length": 23424, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_10.jpg", "length": 23327, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_11.jpg", "length": 22732, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_12.jpg", "length": 23410, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_13.jpg", "length": 22478, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_14.jpg", "length": 23185, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_15.jpg", "length": 23426, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_16.jpg", "length": 23830, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_17.jpg", "length": 23708, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001Q/files/pocket_01.pdb", "length": 15477, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001Q/files/pocket_02.pdb", "length": 14941, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001Q/files/pocket_03.pdb", "length": 13534, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001Q/files/pocket_04.pdb", "length": 8978, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001Q/files/pocket_05.pdb", "length": 7236, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001Q/files/pocket_06.pdb", "length": 5159, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001Q/files/pocket_07.pdb", "length": 3953, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001Q/files/pocket_08.pdb", "length": 2144, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}]} +{"project_identifier": "A001Q", "accession": "A001Q", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1PXV", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1PXV"], "FORCED_REFERENCES": null, "REFERENCES": ["P0C1S6", "Q9EYW6"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GSMYQLQFINLVYDTTKLTHLEQTNINLFIGNWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQRIKFSSFDNEEIIYILDYDDTQHILMQTSSKQGIGTSRPIVYERLV", "GHHHHHHEFDQVQYENTLKNFKIREQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY"], "NUCLSEQ": [], "DOMAINS": ["Staphopain B", "Cleavage; by SspA", "Staphostatin B", "Binds to staphopain B"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4670, "SYSTRES": 294, "PROTATS": 4670, "PROTRES": 294, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.07669, "BOXSIZEY": 9.07669, "BOXSIZEZ": 6.43223, "mdName": "replica 1", "mdAtoms": 4670, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001Q/files/topology.tpr", "length": 1554536, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001Q/files/screenshot.jpg", "length": 23225, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001Q/files/trajectory.bin", "length": 280256040, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 5001, "atoms": 4670}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_01.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_02.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_03.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_04.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_05.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_06.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_07.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_08.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_09.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_10.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_11.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_12.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001Q/files/structure.pdb", "length": 378305, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001Q/files/trajectory.xtc", "length": 89046380, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_00.jpg", "length": 24017, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_01.jpg", "length": 23824, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_02.jpg", "length": 23962, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_03.jpg", "length": 24755, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_04.jpg", "length": 23850, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_05.jpg", "length": 23615, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_06.jpg", "length": 24245, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_07.jpg", "length": 23957, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_08.jpg", "length": 23737, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_09.jpg", "length": 23754, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_10.jpg", "length": 24217, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_11.jpg", "length": 23827, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_12.jpg", "length": 23467, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_13.jpg", "length": 23858, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_14.jpg", "length": 23830, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_15.jpg", "length": 23620, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_16.jpg", "length": 23772, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_17.jpg", "length": 24141, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_18.jpg", "length": 24882, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_00.jpg", "length": 23161, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_01.jpg", "length": 23342, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_02.jpg", "length": 23039, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_03.jpg", "length": 23556, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_04.jpg", "length": 23381, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_05.jpg", "length": 23437, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_06.jpg", "length": 23494, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_07.jpg", "length": 23168, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_08.jpg", "length": 23052, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_09.jpg", "length": 23424, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_10.jpg", "length": 23327, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_11.jpg", "length": 22732, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_12.jpg", "length": 23410, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_13.jpg", "length": 22478, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_14.jpg", "length": 23185, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_15.jpg", "length": 23426, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_16.jpg", "length": 23830, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_17.jpg", "length": 23708, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001Q/files/pocket_01.pdb", "length": 15477, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001Q/files/pocket_02.pdb", "length": 14941, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001Q/files/pocket_03.pdb", "length": 13534, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001Q/files/pocket_04.pdb", "length": 8978, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001Q/files/pocket_05.pdb", "length": 7236, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001Q/files/pocket_06.pdb", "length": 5159, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001Q/files/pocket_07.pdb", "length": 3953, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001Q/files/pocket_08.pdb", "length": 2144, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}]} +{"project_identifier": "A001Q", "accession": "A001Q", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1PXV", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1PXV"], "FORCED_REFERENCES": null, "REFERENCES": ["P0C1S6", "Q9EYW6"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["GSMYQLQFINLVYDTTKLTHLEQTNINLFIGNWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQRIKFSSFDNEEIIYILDYDDTQHILMQTSSKQGIGTSRPIVYERLV", "GHHHHHHEFDQVQYENTLKNFKIREQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY"], "NUCLSEQ": [], "DOMAINS": ["Staphopain B", "Cleavage; by SspA", "Staphostatin B", "Binds to staphopain B"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4670, "SYSTRES": 294, "PROTATS": 4670, "PROTRES": 294, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.07669, "BOXSIZEY": 9.07669, "BOXSIZEZ": 6.43223, "mdName": "replica 1", "mdAtoms": 4670, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001Q/files/topology.tpr", "length": 1554536, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001Q/files/screenshot.jpg", "length": 23225, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001Q/files/trajectory.bin", "length": 280256040, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 5001, "atoms": 4670}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_01.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_02.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_03.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_04.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_05.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_06.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_07.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_08.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_09.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_10.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_11.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001Q/files/pca_trajectory_12.bin", "length": 211680, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0, "frames": 20, "atoms": 882}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001Q/files/structure.pdb", "length": 378305, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001Q/files/trajectory.xtc", "length": 89046380, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_00.jpg", "length": 24017, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_01.jpg", "length": 23824, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_02.jpg", "length": 23962, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_03.jpg", "length": 24755, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_04.jpg", "length": 23850, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_05.jpg", "length": 23615, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_06.jpg", "length": 24245, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_07.jpg", "length": 23957, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_08.jpg", "length": 23737, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_09.jpg", "length": 23754, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_10.jpg", "length": 24217, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_11.jpg", "length": 23827, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_12.jpg", "length": 23467, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_13.jpg", "length": 23858, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_14.jpg", "length": 23830, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_15.jpg", "length": 23620, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_16.jpg", "length": 23772, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_17.jpg", "length": 24141, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001Q/files/clusters_00_screenshot_18.jpg", "length": 24882, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_00.jpg", "length": 23161, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_01.jpg", "length": 23342, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_02.jpg", "length": 23039, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_03.jpg", "length": 23556, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_04.jpg", "length": 23381, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_05.jpg", "length": 23437, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_06.jpg", "length": 23494, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_07.jpg", "length": 23168, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_08.jpg", "length": 23052, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_09.jpg", "length": 23424, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_10.jpg", "length": 23327, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_11.jpg", "length": 22732, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_12.jpg", "length": 23410, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_13.jpg", "length": 22478, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_14.jpg", "length": 23185, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_15.jpg", "length": 23426, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_16.jpg", "length": 23830, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001Q/files/clusters_01_screenshot_17.jpg", "length": 23708, "contentType": "application/octet-stream", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001Q/files/pocket_01.pdb", "length": 15477, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001Q/files/pocket_02.pdb", "length": 14941, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001Q/files/pocket_03.pdb", "length": 13534, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001Q/files/pocket_04.pdb", "length": 8978, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001Q/files/pocket_05.pdb", "length": 7236, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001Q/files/pocket_06.pdb", "length": 5159, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001Q/files/pocket_07.pdb", "length": 3953, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001Q/files/pocket_08.pdb", "length": 2144, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6091ccf553fe0b0d92b4", "md": 0}}]} diff --git a/data/files/A001R/project.json b/data/files/A001R/project.json new file mode 100644 index 0000000000000000000000000000000000000000..5c158118147921d40f7c81a62effe1cdc3c26a6a --- /dev/null +++ b/data/files/A001R/project.json @@ -0,0 +1,197 @@ +{ + "accession": "A001R", + "published": true, + "metadata": { + "NAME": "Dynarepo 1QA9", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1QA9" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P06729", + "P19256" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "SSQQIYGVKYGNVTFHVPSNQPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTKSGSLTIYNLTSSDEDEYEMESPNITDSMKFFLYVGES", + "TNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYELLKNGALKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "T-cell surface antigen CD2", + "Ig-like V-type", + "Ig-like C2-type", + "CD58 binding region 1", + "CD58 binding region 2", + "Lymphocyte function-associated antigen 3", + "Ig-like" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 3228, + "SYSTRES": 197, + "PROTATS": 3228, + "PROTRES": 197, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 9.34015, + "BOXSIZEY": 9.34015, + "BOXSIZEZ": 6.59082, + "mdName": "replica 1", + "mdAtoms": 3228, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "pca_trajectory_17.bin", + "pca_trajectory_18.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f61b84b48491617a435e7", + "creationDate": "2025-06-03T20:57:28.000Z", + "identifier": "A001R" +} \ No newline at end of file diff --git a/data/files/A001R/records.jsonl b/data/files/A001R/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..ef2f978c0377529394694af05189f50dc0f3f343 --- /dev/null +++ b/data/files/A001R/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001R", "accession": "A001R", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1QA9", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1QA9"], "FORCED_REFERENCES": null, "REFERENCES": ["P06729", "P19256"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["SSQQIYGVKYGNVTFHVPSNQPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTKSGSLTIYNLTSSDEDEYEMESPNITDSMKFFLYVGES", "TNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYELLKNGALKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER"], "NUCLSEQ": [], "DOMAINS": ["T-cell surface antigen CD2", "Ig-like V-type", "Ig-like C2-type", "CD58 binding region 1", "CD58 binding region 2", "Lymphocyte function-associated antigen 3", "Ig-like"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3228, "SYSTRES": 197, "PROTATS": 3228, "PROTRES": 197, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.34015, "BOXSIZEY": 9.34015, "BOXSIZEZ": 6.59082, "mdName": "replica 1", "mdAtoms": 3228, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001R/files/topology.tpr", "length": 1199112, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001R/files/screenshot.jpg", "length": 19370, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001R/files/trajectory.bin", "length": 193718736, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 5001, "atoms": 3228}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_01.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_02.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_03.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_04.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_05.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_06.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_07.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_08.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_09.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_10.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_11.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_12.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_13.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_14.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_15.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_16.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_17.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_18.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_18.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001R/files/structure.pdb", "length": 261503, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001R/files/trajectory.xtc", "length": 61372920, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_00.jpg", "length": 20048, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_01.jpg", "length": 20110, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_02.jpg", "length": 20447, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_03.jpg", "length": 19802, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_04.jpg", "length": 20708, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_05.jpg", "length": 20554, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_06.jpg", "length": 19652, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_07.jpg", "length": 20515, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_08.jpg", "length": 19993, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_09.jpg", "length": 19732, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_10.jpg", "length": 20244, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_11.jpg", "length": 19667, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_12.jpg", "length": 20852, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_13.jpg", "length": 20341, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_14.jpg", "length": 20521, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_15.jpg", "length": 20230, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_16.jpg", "length": 20483, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_17.jpg", "length": 20717, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_18.jpg", "length": 20073, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_19.jpg", "length": 20276, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_00.jpg", "length": 19996, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_01.jpg", "length": 20096, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_02.jpg", "length": 20310, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_03.jpg", "length": 20631, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_04.jpg", "length": 20436, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_05.jpg", "length": 20186, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_06.jpg", "length": 19890, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_07.jpg", "length": 20438, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_08.jpg", "length": 20478, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_09.jpg", "length": 20458, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_10.jpg", "length": 19911, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_11.jpg", "length": 20399, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_12.jpg", "length": 20500, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_13.jpg", "length": 20093, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_14.jpg", "length": 20987, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_15.jpg", "length": 20319, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_16.jpg", "length": 20935, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_17.jpg", "length": 19941, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_18.jpg", "length": 20157, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001R/files/pocket_01.pdb", "length": 15812, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001R/files/pocket_02.pdb", "length": 4422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001R/files/pocket_03.pdb", "length": 4288, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}]} +{"project_identifier": "A001R", "accession": "A001R", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1QA9", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1QA9"], "FORCED_REFERENCES": null, "REFERENCES": ["P06729", "P19256"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["SSQQIYGVKYGNVTFHVPSNQPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTKSGSLTIYNLTSSDEDEYEMESPNITDSMKFFLYVGES", "TNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYELLKNGALKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER"], "NUCLSEQ": [], "DOMAINS": ["T-cell surface antigen CD2", "Ig-like V-type", "Ig-like C2-type", "CD58 binding region 1", "CD58 binding region 2", "Lymphocyte function-associated antigen 3", "Ig-like"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3228, "SYSTRES": 197, "PROTATS": 3228, "PROTRES": 197, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.34015, "BOXSIZEY": 9.34015, "BOXSIZEZ": 6.59082, "mdName": "replica 1", "mdAtoms": 3228, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001R/files/topology.tpr", "length": 1199112, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001R/files/screenshot.jpg", "length": 19370, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001R/files/trajectory.bin", "length": 193718736, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 5001, "atoms": 3228}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_01.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_02.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_03.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_04.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_05.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_06.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_07.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_08.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_09.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_10.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_11.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_12.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_13.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_14.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_15.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_16.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_17.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_18.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_18.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001R/files/structure.pdb", "length": 261503, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001R/files/trajectory.xtc", "length": 61372920, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_00.jpg", "length": 20048, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_01.jpg", "length": 20110, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_02.jpg", "length": 20447, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_03.jpg", "length": 19802, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_04.jpg", "length": 20708, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_05.jpg", "length": 20554, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_06.jpg", "length": 19652, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_07.jpg", "length": 20515, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_08.jpg", "length": 19993, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_09.jpg", "length": 19732, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_10.jpg", "length": 20244, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_11.jpg", "length": 19667, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_12.jpg", "length": 20852, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_13.jpg", "length": 20341, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_14.jpg", "length": 20521, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_15.jpg", "length": 20230, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_16.jpg", "length": 20483, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_17.jpg", "length": 20717, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_18.jpg", "length": 20073, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_19.jpg", "length": 20276, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_00.jpg", "length": 19996, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_01.jpg", "length": 20096, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_02.jpg", "length": 20310, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_03.jpg", "length": 20631, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_04.jpg", "length": 20436, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_05.jpg", "length": 20186, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_06.jpg", "length": 19890, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_07.jpg", "length": 20438, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_08.jpg", "length": 20478, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_09.jpg", "length": 20458, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_10.jpg", "length": 19911, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_11.jpg", "length": 20399, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_12.jpg", "length": 20500, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_13.jpg", "length": 20093, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_14.jpg", "length": 20987, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_15.jpg", "length": 20319, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_16.jpg", "length": 20935, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_17.jpg", "length": 19941, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_18.jpg", "length": 20157, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001R/files/pocket_01.pdb", "length": 15812, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001R/files/pocket_02.pdb", "length": 4422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001R/files/pocket_03.pdb", "length": 4288, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}]} +{"project_identifier": "A001R", "accession": "A001R", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1QA9", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1QA9"], "FORCED_REFERENCES": null, "REFERENCES": ["P06729", "P19256"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["SSQQIYGVKYGNVTFHVPSNQPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTKSGSLTIYNLTSSDEDEYEMESPNITDSMKFFLYVGES", "TNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYELLKNGALKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER"], "NUCLSEQ": [], "DOMAINS": ["T-cell surface antigen CD2", "Ig-like V-type", "Ig-like C2-type", "CD58 binding region 1", "CD58 binding region 2", "Lymphocyte function-associated antigen 3", "Ig-like"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3228, "SYSTRES": 197, "PROTATS": 3228, "PROTRES": 197, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.34015, "BOXSIZEY": 9.34015, "BOXSIZEZ": 6.59082, "mdName": "replica 1", "mdAtoms": 3228, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001R/files/topology.tpr", "length": 1199112, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001R/files/screenshot.jpg", "length": 19370, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001R/files/trajectory.bin", "length": 193718736, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 5001, "atoms": 3228}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_01.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_02.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_03.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_04.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_05.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_06.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_07.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_08.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_09.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_10.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_11.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_12.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_13.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_14.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_15.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_16.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_17.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "pca_trajectory_18.bin", "downloadUrl": "/projects/A001R/files/pca_trajectory_18.bin", "length": 141840, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0, "frames": 20, "atoms": 591}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001R/files/structure.pdb", "length": 261503, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001R/files/trajectory.xtc", "length": 61372920, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_00.jpg", "length": 20048, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_01.jpg", "length": 20110, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_02.jpg", "length": 20447, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_03.jpg", "length": 19802, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_04.jpg", "length": 20708, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_05.jpg", "length": 20554, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_06.jpg", "length": 19652, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_07.jpg", "length": 20515, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_08.jpg", "length": 19993, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_09.jpg", "length": 19732, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_10.jpg", "length": 20244, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_11.jpg", "length": 19667, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_12.jpg", "length": 20852, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_13.jpg", "length": 20341, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_14.jpg", "length": 20521, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_15.jpg", "length": 20230, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_16.jpg", "length": 20483, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_17.jpg", "length": 20717, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_18.jpg", "length": 20073, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001R/files/clusters_00_screenshot_19.jpg", "length": 20276, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_00.jpg", "length": 19996, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_01.jpg", "length": 20096, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_02.jpg", "length": 20310, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_03.jpg", "length": 20631, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_04.jpg", "length": 20436, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_05.jpg", "length": 20186, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_06.jpg", "length": 19890, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_07.jpg", "length": 20438, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_08.jpg", "length": 20478, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_09.jpg", "length": 20458, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_10.jpg", "length": 19911, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_11.jpg", "length": 20399, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_12.jpg", "length": 20500, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_13.jpg", "length": 20093, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_14.jpg", "length": 20987, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_15.jpg", "length": 20319, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_16.jpg", "length": 20935, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_17.jpg", "length": 19941, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001R/files/clusters_01_screenshot_18.jpg", "length": 20157, "contentType": "application/octet-stream", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001R/files/pocket_01.pdb", "length": 15812, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001R/files/pocket_02.pdb", "length": 4422, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001R/files/pocket_03.pdb", "length": 4288, "contentType": "chemical/x-pdb", "metadata": {"project": "683f61b84b48491617a435e7", "md": 0}}]} diff --git a/data/files/A001S/project.json b/data/files/A001S/project.json new file mode 100644 index 0000000000000000000000000000000000000000..d2c2597c6e764cce0e8410b74356f39268060263 --- /dev/null +++ b/data/files/A001S/project.json @@ -0,0 +1,555 @@ +{ + "accession": "A001S", + "published": true, + "metadata": { + "NAME": "Dynarepo 1RLB", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1RLB" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P02766", + "P02753" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "TGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE", + "ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSCRLLNLDGTCADSYSFVFARDPSGFSPQVQKIVRQRQEELCLARQYRLIPHNGYC", + "SKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Transthyretin", + "Retinol-binding protein 4", + "Plasma retinol-binding protein(1-182)", + "Plasma retinol-binding protein(1-181)", + "Plasma retinol-binding protein(1-179)", + "Plasma retinol-binding protein(1-176)" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 12928, + "SYSTRES": 834, + "PROTATS": 12928, + "PROTRES": 834, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "chain A-chain C interaction", + "agent_1": "chain A", + "agent_2": "chain C", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain A-chain D interaction", + "agent_1": "chain A", + "agent_2": "chain D", + "selection_1": "chain A", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "chain A-chain E interaction", + "agent_1": "chain A", + "agent_2": "chain E", + "selection_1": "chain A", + "selection_2": "chain E", + "type": "protein-protein" + }, + { + "name": "chain A-chain F interaction", + "agent_1": "chain A", + "agent_2": "chain F", + "selection_1": "chain A", + "selection_2": "chain F", + "type": "protein-protein" + }, + { + "name": "chain B-chain C interaction", + "agent_1": "chain B", + "agent_2": "chain C", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain B-chain D interaction", + "agent_1": "chain B", + "agent_2": "chain D", + "selection_1": "chain B", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "chain B-chain E interaction", + "agent_1": "chain B", + "agent_2": "chain E", + "selection_1": "chain B", + "selection_2": "chain E", + "type": "protein-protein" + }, + { + "name": "chain B-chain F interaction", + "agent_1": "chain B", + "agent_2": "chain F", + "selection_1": "chain B", + "selection_2": "chain F", + "type": "protein-protein" + }, + { + "name": "chain C-chain D interaction", + "agent_1": "chain C", + "agent_2": "chain D", + "selection_1": "chain C", + "selection_2": "chain D", + "type": "protein-protein" + }, + { + "name": "chain C-chain E interaction", + "agent_1": "chain C", + "agent_2": "chain E", + "selection_1": "chain C", + "selection_2": "chain E", + "type": "protein-protein" + }, + { + "name": "chain C-chain F interaction", + "agent_1": "chain C", + "agent_2": "chain F", + "selection_1": "chain C", + "selection_2": "chain F", + "type": "protein-protein" + }, + { + "name": "chain D-chain F interaction", + "agent_1": "chain D", + "agent_2": "chain F", + "selection_1": "chain D", + "selection_2": "chain E", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 14.5995, + "BOXSIZEY": 14.5995, + "BOXSIZEZ": 10.3657, + "mdName": "replica 1", + "mdAtoms": 12928, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_00_screenshot_21.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_02_screenshot_18.jpg", + "clusters_02_screenshot_19.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "clusters_04_screenshot_00.jpg", + "clusters_04_screenshot_01.jpg", + "clusters_04_screenshot_02.jpg", + "clusters_04_screenshot_03.jpg", + "clusters_04_screenshot_04.jpg", + "clusters_04_screenshot_05.jpg", + "clusters_04_screenshot_06.jpg", + "clusters_04_screenshot_07.jpg", + "clusters_04_screenshot_08.jpg", + "clusters_04_screenshot_09.jpg", + "clusters_04_screenshot_10.jpg", + "clusters_04_screenshot_11.jpg", + "clusters_04_screenshot_12.jpg", + "clusters_04_screenshot_13.jpg", + "clusters_04_screenshot_14.jpg", + "clusters_04_screenshot_15.jpg", + "clusters_04_screenshot_16.jpg", + "clusters_04_screenshot_17.jpg", + "clusters_04_screenshot_18.jpg", + "clusters_04_screenshot_19.jpg", + "clusters_04_screenshot_20.jpg", + "clusters_05_screenshot_00.jpg", + "clusters_05_screenshot_01.jpg", + "clusters_05_screenshot_02.jpg", + "clusters_05_screenshot_03.jpg", + "clusters_05_screenshot_04.jpg", + "clusters_05_screenshot_05.jpg", + "clusters_05_screenshot_06.jpg", + "clusters_05_screenshot_07.jpg", + "clusters_05_screenshot_08.jpg", + "clusters_05_screenshot_09.jpg", + "clusters_05_screenshot_10.jpg", + "clusters_05_screenshot_11.jpg", + "clusters_05_screenshot_12.jpg", + "clusters_05_screenshot_13.jpg", + "clusters_05_screenshot_14.jpg", + "clusters_05_screenshot_15.jpg", + "clusters_05_screenshot_16.jpg", + "clusters_05_screenshot_17.jpg", + "clusters_05_screenshot_18.jpg", + "clusters_05_screenshot_19.jpg", + "clusters_05_screenshot_20.jpg", + "clusters_05_screenshot_21.jpg", + "clusters_06_screenshot_00.jpg", + "clusters_06_screenshot_01.jpg", + "clusters_06_screenshot_02.jpg", + "clusters_06_screenshot_03.jpg", + "clusters_06_screenshot_04.jpg", + "clusters_06_screenshot_05.jpg", + "clusters_06_screenshot_06.jpg", + "clusters_06_screenshot_07.jpg", + "clusters_06_screenshot_08.jpg", + "clusters_06_screenshot_09.jpg", + "clusters_06_screenshot_10.jpg", + "clusters_06_screenshot_11.jpg", + "clusters_06_screenshot_12.jpg", + "clusters_06_screenshot_13.jpg", + "clusters_06_screenshot_14.jpg", + "clusters_06_screenshot_15.jpg", + "clusters_06_screenshot_16.jpg", + "clusters_06_screenshot_17.jpg", + "clusters_06_screenshot_18.jpg", + "clusters_07_screenshot_00.jpg", + "clusters_07_screenshot_01.jpg", + "clusters_07_screenshot_02.jpg", + "clusters_07_screenshot_03.jpg", + "clusters_07_screenshot_04.jpg", + "clusters_07_screenshot_05.jpg", + "clusters_07_screenshot_06.jpg", + "clusters_07_screenshot_07.jpg", + "clusters_07_screenshot_08.jpg", + "clusters_07_screenshot_09.jpg", + "clusters_07_screenshot_10.jpg", + "clusters_07_screenshot_11.jpg", + "clusters_07_screenshot_12.jpg", + "clusters_07_screenshot_13.jpg", + "clusters_07_screenshot_14.jpg", + "clusters_07_screenshot_15.jpg", + "clusters_07_screenshot_16.jpg", + "clusters_07_screenshot_17.jpg", + "clusters_07_screenshot_18.jpg", + "clusters_08_screenshot_00.jpg", + "clusters_08_screenshot_01.jpg", + "clusters_08_screenshot_02.jpg", + "clusters_08_screenshot_03.jpg", + "clusters_08_screenshot_04.jpg", + "clusters_08_screenshot_05.jpg", + "clusters_08_screenshot_06.jpg", + "clusters_08_screenshot_07.jpg", + "clusters_08_screenshot_08.jpg", + "clusters_08_screenshot_09.jpg", + "clusters_08_screenshot_10.jpg", + "clusters_08_screenshot_11.jpg", + "clusters_08_screenshot_12.jpg", + "clusters_08_screenshot_13.jpg", + "clusters_08_screenshot_14.jpg", + "clusters_08_screenshot_15.jpg", + "clusters_08_screenshot_16.jpg", + "clusters_08_screenshot_17.jpg", + "clusters_08_screenshot_18.jpg", + "clusters_08_screenshot_19.jpg", + "clusters_08_screenshot_20.jpg", + "clusters_08_screenshot_21.jpg", + "clusters_09_screenshot_00.jpg", + "clusters_09_screenshot_01.jpg", + "clusters_09_screenshot_02.jpg", + "clusters_09_screenshot_03.jpg", + "clusters_09_screenshot_04.jpg", + "clusters_09_screenshot_05.jpg", + "clusters_09_screenshot_06.jpg", + "clusters_09_screenshot_07.jpg", + "clusters_09_screenshot_08.jpg", + "clusters_09_screenshot_09.jpg", + "clusters_09_screenshot_10.jpg", + "clusters_09_screenshot_11.jpg", + "clusters_09_screenshot_12.jpg", + "clusters_09_screenshot_13.jpg", + "clusters_09_screenshot_14.jpg", + "clusters_09_screenshot_15.jpg", + "clusters_09_screenshot_16.jpg", + "clusters_09_screenshot_17.jpg", + "clusters_09_screenshot_18.jpg", + "clusters_09_screenshot_19.jpg", + "clusters_10_screenshot_00.jpg", + "clusters_10_screenshot_01.jpg", + "clusters_10_screenshot_02.jpg", + "clusters_10_screenshot_03.jpg", + "clusters_10_screenshot_04.jpg", + "clusters_10_screenshot_05.jpg", + "clusters_10_screenshot_06.jpg", + "clusters_10_screenshot_07.jpg", + "clusters_10_screenshot_08.jpg", + "clusters_10_screenshot_09.jpg", + "clusters_10_screenshot_10.jpg", + "clusters_10_screenshot_11.jpg", + "clusters_10_screenshot_12.jpg", + "clusters_10_screenshot_13.jpg", + "clusters_10_screenshot_14.jpg", + "clusters_10_screenshot_15.jpg", + "clusters_10_screenshot_16.jpg", + "clusters_10_screenshot_17.jpg", + "clusters_10_screenshot_18.jpg", + "clusters_10_screenshot_19.jpg", + "clusters_10_screenshot_20.jpg", + "clusters_11_screenshot_00.jpg", + "clusters_11_screenshot_01.jpg", + "clusters_11_screenshot_02.jpg", + "clusters_11_screenshot_03.jpg", + "clusters_11_screenshot_04.jpg", + "clusters_11_screenshot_05.jpg", + "clusters_11_screenshot_06.jpg", + "clusters_11_screenshot_07.jpg", + "clusters_11_screenshot_08.jpg", + "clusters_11_screenshot_09.jpg", + "clusters_11_screenshot_10.jpg", + "clusters_11_screenshot_11.jpg", + "clusters_11_screenshot_12.jpg", + "clusters_11_screenshot_13.jpg", + "clusters_11_screenshot_14.jpg", + "clusters_11_screenshot_15.jpg", + "clusters_11_screenshot_16.jpg", + "clusters_11_screenshot_17.jpg", + "clusters_11_screenshot_18.jpg", + "clusters_11_screenshot_19.jpg", + "clusters_12_screenshot_00.jpg", + "clusters_12_screenshot_01.jpg", + "clusters_12_screenshot_02.jpg", + "clusters_12_screenshot_03.jpg", + "clusters_12_screenshot_04.jpg", + "clusters_12_screenshot_05.jpg", + "clusters_12_screenshot_06.jpg", + "clusters_12_screenshot_07.jpg", + "clusters_12_screenshot_08.jpg", + "clusters_12_screenshot_09.jpg", + "clusters_12_screenshot_10.jpg", + "clusters_12_screenshot_11.jpg", + "clusters_12_screenshot_12.jpg", + "clusters_12_screenshot_13.jpg", + "clusters_12_screenshot_14.jpg", + "clusters_12_screenshot_15.jpg", + "clusters_12_screenshot_16.jpg", + "clusters_12_screenshot_17.jpg", + "clusters_12_screenshot_18.jpg", + "clusters_12_screenshot_19.jpg", + "clusters_13_screenshot_00.jpg", + "clusters_13_screenshot_01.jpg", + "clusters_13_screenshot_02.jpg", + "clusters_13_screenshot_03.jpg", + "clusters_13_screenshot_04.jpg", + "clusters_13_screenshot_05.jpg", + "clusters_13_screenshot_06.jpg", + "clusters_13_screenshot_07.jpg", + "clusters_13_screenshot_08.jpg", + "clusters_13_screenshot_09.jpg", + "clusters_13_screenshot_10.jpg", + "clusters_13_screenshot_11.jpg", + "clusters_13_screenshot_12.jpg", + "clusters_13_screenshot_13.jpg", + "clusters_13_screenshot_14.jpg", + "clusters_13_screenshot_15.jpg", + "clusters_13_screenshot_16.jpg", + "clusters_13_screenshot_17.jpg", + "clusters_13_screenshot_18.jpg", + "clusters_13_screenshot_19.jpg", + "clusters_13_screenshot_20.jpg", + "clusters_13_screenshot_21.jpg", + "clusters_13_screenshot_22.jpg", + "clusters_13_screenshot_23.jpg", + "clusters_13_screenshot_24.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "clusters-04", + "clusters-05", + "clusters-06", + "clusters-07", + "clusters-08", + "clusters-09", + "clusters-10", + "clusters-11", + "clusters-12", + "clusters-13", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f6396821889b377defe7a", + "creationDate": "2025-06-03T21:05:26.000Z", + "identifier": "A001S" +} \ No newline at end of file diff --git a/data/files/A001S/records.jsonl b/data/files/A001S/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..d534b548375024938ee826e053d9c747983a8a83 --- /dev/null +++ b/data/files/A001S/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001S", "accession": "A001S", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "clusters-06", "clusters-07", "clusters-08", "clusters-09", "clusters-10", "clusters-11", "clusters-12", "clusters-13", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1RLB", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1RLB"], "FORCED_REFERENCES": null, "REFERENCES": ["P02766", "P02753"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["TGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE", "ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSCRLLNLDGTCADSYSFVFARDPSGFSPQVQKIVRQRQEELCLARQYRLIPHNGYC", "SKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE"], "NUCLSEQ": [], "DOMAINS": ["Transthyretin", "Retinol-binding protein 4", "Plasma retinol-binding protein(1-182)", "Plasma retinol-binding protein(1-181)", "Plasma retinol-binding protein(1-179)", "Plasma retinol-binding protein(1-176)"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 12928, "SYSTRES": 834, "PROTATS": 12928, "PROTRES": 834, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain A-chain E interaction", "agent_1": "chain A", "agent_2": "chain E", "selection_1": "chain A", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain A-chain F interaction", "agent_1": "chain A", "agent_2": "chain F", "selection_1": "chain A", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain E interaction", "agent_1": "chain B", "agent_2": "chain E", "selection_1": "chain B", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain B-chain F interaction", "agent_1": "chain B", "agent_2": "chain F", "selection_1": "chain B", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain C-chain D interaction", "agent_1": "chain C", "agent_2": "chain D", "selection_1": "chain C", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain C-chain E interaction", "agent_1": "chain C", "agent_2": "chain E", "selection_1": "chain C", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain C-chain F interaction", "agent_1": "chain C", "agent_2": "chain F", "selection_1": "chain C", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain D-chain F interaction", "agent_1": "chain D", "agent_2": "chain F", "selection_1": "chain D", "selection_2": "chain E", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 14.5995, "BOXSIZEY": 14.5995, "BOXSIZEZ": 10.3657, "mdName": "replica 1", "mdAtoms": 12928, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001S/files/topology.tpr", "length": 4033636, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001S/files/screenshot.jpg", "length": 25438, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001S/files/trajectory.bin", "length": 775835136, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 5001, "atoms": 12928}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_01.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_02.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_03.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_04.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_05.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_06.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_07.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_08.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_09.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_10.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001S/files/structure.pdb", "length": 1047203, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001S/files/trajectory.xtc", "length": 245866088, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_00.jpg", "length": 24873, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_01.jpg", "length": 25249, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_02.jpg", "length": 25305, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_03.jpg", "length": 25250, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_04.jpg", "length": 25886, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_05.jpg", "length": 25552, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_06.jpg", "length": 25675, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_07.jpg", "length": 25628, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_08.jpg", "length": 25645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_09.jpg", "length": 25490, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_10.jpg", "length": 25948, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_11.jpg", "length": 25716, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_12.jpg", "length": 25512, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_13.jpg", "length": 25236, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_14.jpg", "length": 25661, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_15.jpg", "length": 26130, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_16.jpg", "length": 25500, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_17.jpg", "length": 25496, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_18.jpg", "length": 25489, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_19.jpg", "length": 25402, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_20.jpg", "length": 25750, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_21.jpg", "length": 25754, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_00.jpg", "length": 23711, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_01.jpg", "length": 23802, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_02.jpg", "length": 24165, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_03.jpg", "length": 24111, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_04.jpg", "length": 24321, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_05.jpg", "length": 23916, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_06.jpg", "length": 24051, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_07.jpg", "length": 23888, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_08.jpg", "length": 23715, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_09.jpg", "length": 23731, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_10.jpg", "length": 23848, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_11.jpg", "length": 23909, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_12.jpg", "length": 24132, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_13.jpg", "length": 23969, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_14.jpg", "length": 24069, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_15.jpg", "length": 24041, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_16.jpg", "length": 23863, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_17.jpg", "length": 24095, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_18.jpg", "length": 24165, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_00.jpg", "length": 25206, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_01.jpg", "length": 24821, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_02.jpg", "length": 25082, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_03.jpg", "length": 25114, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_04.jpg", "length": 24751, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_05.jpg", "length": 25199, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_06.jpg", "length": 25356, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_07.jpg", "length": 25426, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_08.jpg", "length": 25200, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_09.jpg", "length": 25645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_10.jpg", "length": 25113, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_11.jpg", "length": 25189, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_12.jpg", "length": 25289, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_13.jpg", "length": 24803, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_14.jpg", "length": 25023, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_15.jpg", "length": 25195, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_16.jpg", "length": 24979, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_17.jpg", "length": 25258, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_18.jpg", "length": 25457, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_19.jpg", "length": 25407, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_00.jpg", "length": 25383, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_01.jpg", "length": 25243, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_02.jpg", "length": 25042, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_03.jpg", "length": 25274, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_04.jpg", "length": 25631, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_05.jpg", "length": 25299, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_06.jpg", "length": 24962, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_07.jpg", "length": 25432, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_08.jpg", "length": 25628, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_09.jpg", "length": 25906, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_10.jpg", "length": 25568, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_11.jpg", "length": 26181, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_12.jpg", "length": 25680, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_13.jpg", "length": 25704, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_14.jpg", "length": 25867, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_15.jpg", "length": 25507, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_16.jpg", "length": 25645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_17.jpg", "length": 25595, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_18.jpg", "length": 25631, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_19.jpg", "length": 25567, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_00.jpg", "length": 24733, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_01.jpg", "length": 24084, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_02.jpg", "length": 24288, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_03.jpg", "length": 24872, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_04.jpg", "length": 25105, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_05.jpg", "length": 24803, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_06.jpg", "length": 24729, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_07.jpg", "length": 24808, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_08.jpg", "length": 24758, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_09.jpg", "length": 24738, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_10.jpg", "length": 24749, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_11.jpg", "length": 24540, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_12.jpg", "length": 25008, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_13.jpg", "length": 24629, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_14.jpg", "length": 24998, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_15.jpg", "length": 25079, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_16.jpg", "length": 24523, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_17.jpg", "length": 24311, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_18.jpg", "length": 25285, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_19.jpg", "length": 24828, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_20.jpg", "length": 24649, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_00.jpg", "length": 24650, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_01.jpg", "length": 24485, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_02.jpg", "length": 24572, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_03.jpg", "length": 24645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_04.jpg", "length": 24498, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_05.jpg", "length": 24572, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_06.jpg", "length": 24359, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_07.jpg", "length": 24580, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_08.jpg", "length": 24437, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_09.jpg", "length": 24016, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_10.jpg", "length": 24851, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_11.jpg", "length": 24820, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_12.jpg", "length": 25012, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_13.jpg", "length": 24534, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_14.jpg", "length": 24740, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_15.jpg", "length": 24858, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_16.jpg", "length": 24824, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_17.jpg", "length": 24979, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_18.jpg", "length": 25043, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_19.jpg", "length": 25000, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_20.jpg", "length": 24626, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_21.jpg", "length": 24715, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_00.jpg", "length": 23983, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_01.jpg", "length": 23695, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_02.jpg", "length": 23997, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_03.jpg", "length": 24202, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_04.jpg", "length": 24346, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_05.jpg", "length": 24238, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_06.jpg", "length": 24107, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_07.jpg", "length": 24317, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_08.jpg", "length": 24238, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_09.jpg", "length": 24360, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_10.jpg", "length": 24071, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_11.jpg", "length": 24524, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_12.jpg", "length": 24129, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_13.jpg", "length": 24146, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_14.jpg", "length": 23948, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_15.jpg", "length": 24144, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_16.jpg", "length": 24446, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_17.jpg", "length": 24454, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_18.jpg", "length": 24476, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_00.jpg", "length": 23683, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_01.jpg", "length": 23922, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_02.jpg", "length": 24041, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_03.jpg", "length": 23885, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_04.jpg", "length": 24155, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_05.jpg", "length": 24089, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_06.jpg", "length": 24051, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_07.jpg", "length": 23919, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_08.jpg", "length": 24210, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_09.jpg", "length": 24130, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_10.jpg", "length": 24178, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_11.jpg", "length": 24180, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_12.jpg", "length": 23706, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_13.jpg", "length": 24216, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_14.jpg", "length": 24092, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_15.jpg", "length": 23829, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_16.jpg", "length": 24181, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_17.jpg", "length": 24504, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_18.jpg", "length": 23993, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_00.jpg", "length": 23660, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_01.jpg", "length": 23728, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_02.jpg", "length": 23827, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_03.jpg", "length": 24175, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_04.jpg", "length": 24304, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_05.jpg", "length": 24249, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_06.jpg", "length": 23978, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_07.jpg", "length": 23926, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_08.jpg", "length": 23505, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_09.jpg", "length": 23726, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_10.jpg", "length": 24065, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_11.jpg", "length": 23928, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_12.jpg", "length": 23987, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_13.jpg", "length": 24178, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_14.jpg", "length": 24307, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_15.jpg", "length": 24115, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_16.jpg", "length": 23971, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_17.jpg", "length": 24223, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_18.jpg", "length": 23848, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_19.jpg", "length": 24105, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_20.jpg", "length": 24075, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_21.jpg", "length": 23888, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_00.jpg", "length": 24459, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_01.jpg", "length": 24951, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_02.jpg", "length": 24633, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_03.jpg", "length": 24427, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_04.jpg", "length": 24836, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_05.jpg", "length": 24630, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_06.jpg", "length": 24930, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_07.jpg", "length": 24663, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_08.jpg", "length": 24236, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_09.jpg", "length": 24685, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_10.jpg", "length": 24890, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_11.jpg", "length": 24920, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_12.jpg", "length": 24916, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_13.jpg", "length": 25517, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_14.jpg", "length": 25184, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_15.jpg", "length": 24352, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_16.jpg", "length": 25109, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_17.jpg", "length": 24632, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_18.jpg", "length": 25077, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_19.jpg", "length": 25185, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_00.jpg", "length": 24025, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_01.jpg", "length": 24361, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_02.jpg", "length": 24251, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_03.jpg", "length": 24018, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_04.jpg", "length": 24046, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_05.jpg", "length": 24697, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_06.jpg", "length": 24636, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_07.jpg", "length": 24573, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_08.jpg", "length": 24002, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_09.jpg", "length": 24308, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_10.jpg", "length": 24336, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_11.jpg", "length": 24118, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_12.jpg", "length": 24674, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_13.jpg", "length": 24208, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_14.jpg", "length": 24465, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_15.jpg", "length": 24260, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_16.jpg", "length": 24651, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_17.jpg", "length": 24519, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_18.jpg", "length": 24322, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_19.jpg", "length": 24243, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_20.jpg", "length": 24331, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_00.jpg", "length": 24181, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_01.jpg", "length": 24287, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_02.jpg", "length": 24254, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_03.jpg", "length": 24804, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_04.jpg", "length": 24658, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_05.jpg", "length": 24321, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_06.jpg", "length": 24305, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_07.jpg", "length": 24213, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_08.jpg", "length": 24446, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_09.jpg", "length": 24359, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_10.jpg", "length": 24677, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_11.jpg", "length": 24556, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_12.jpg", "length": 24808, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_13.jpg", "length": 24699, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_14.jpg", "length": 24426, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_15.jpg", "length": 24524, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_16.jpg", "length": 24637, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_17.jpg", "length": 24551, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_18.jpg", "length": 24481, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_19.jpg", "length": 24310, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_00.jpg", "length": 22643, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_01.jpg", "length": 22445, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_02.jpg", "length": 22209, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_03.jpg", "length": 22318, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_04.jpg", "length": 22609, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_05.jpg", "length": 22334, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_06.jpg", "length": 22431, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_07.jpg", "length": 22255, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_08.jpg", "length": 22324, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_09.jpg", "length": 22611, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_10.jpg", "length": 22472, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_11.jpg", "length": 22175, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_12.jpg", "length": 22369, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_13.jpg", "length": 22231, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_14.jpg", "length": 22178, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_15.jpg", "length": 22645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_16.jpg", "length": 22545, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_17.jpg", "length": 22234, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_18.jpg", "length": 22404, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_19.jpg", "length": 22379, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_00.jpg", "length": 25424, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_01.jpg", "length": 25133, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_02.jpg", "length": 25497, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_03.jpg", "length": 24940, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_04.jpg", "length": 25162, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_05.jpg", "length": 25418, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_06.jpg", "length": 25566, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_07.jpg", "length": 25576, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_08.jpg", "length": 25570, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_09.jpg", "length": 25471, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_10.jpg", "length": 25483, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_11.jpg", "length": 25307, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_12.jpg", "length": 25670, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_13.jpg", "length": 25410, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_14.jpg", "length": 25655, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_15.jpg", "length": 25475, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_16.jpg", "length": 25560, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_17.jpg", "length": 25757, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_18.jpg", "length": 25734, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_19.jpg", "length": 25210, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_20.jpg", "length": 25563, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_21.jpg", "length": 25649, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_22.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_22.jpg", "length": 25766, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_23.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_23.jpg", "length": 25608, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_24.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_24.jpg", "length": 25881, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001S/files/pocket_01.pdb", "length": 13869, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001S/files/pocket_02.pdb", "length": 13199, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001S/files/pocket_03.pdb", "length": 12529, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001S/files/pocket_04.pdb", "length": 11725, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001S/files/pocket_05.pdb", "length": 10854, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001S/files/pocket_06.pdb", "length": 10452, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001S/files/pocket_07.pdb", "length": 9782, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001S/files/pocket_08.pdb", "length": 8643, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001S/files/pocket_09.pdb", "length": 8509, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001S/files/pocket_10.pdb", "length": 8241, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}]} +{"project_identifier": "A001S", "accession": "A001S", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "clusters-06", "clusters-07", "clusters-08", "clusters-09", "clusters-10", "clusters-11", "clusters-12", "clusters-13", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1RLB", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1RLB"], "FORCED_REFERENCES": null, "REFERENCES": ["P02766", "P02753"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["TGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE", "ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSCRLLNLDGTCADSYSFVFARDPSGFSPQVQKIVRQRQEELCLARQYRLIPHNGYC", "SKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE"], "NUCLSEQ": [], "DOMAINS": ["Transthyretin", "Retinol-binding protein 4", "Plasma retinol-binding protein(1-182)", "Plasma retinol-binding protein(1-181)", "Plasma retinol-binding protein(1-179)", "Plasma retinol-binding protein(1-176)"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 12928, "SYSTRES": 834, "PROTATS": 12928, "PROTRES": 834, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain A-chain E interaction", "agent_1": "chain A", "agent_2": "chain E", "selection_1": "chain A", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain A-chain F interaction", "agent_1": "chain A", "agent_2": "chain F", "selection_1": "chain A", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain E interaction", "agent_1": "chain B", "agent_2": "chain E", "selection_1": "chain B", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain B-chain F interaction", "agent_1": "chain B", "agent_2": "chain F", "selection_1": "chain B", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain C-chain D interaction", "agent_1": "chain C", "agent_2": "chain D", "selection_1": "chain C", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain C-chain E interaction", "agent_1": "chain C", "agent_2": "chain E", "selection_1": "chain C", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain C-chain F interaction", "agent_1": "chain C", "agent_2": "chain F", "selection_1": "chain C", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain D-chain F interaction", "agent_1": "chain D", "agent_2": "chain F", "selection_1": "chain D", "selection_2": "chain E", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 14.5995, "BOXSIZEY": 14.5995, "BOXSIZEZ": 10.3657, "mdName": "replica 1", "mdAtoms": 12928, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001S/files/topology.tpr", "length": 4033636, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001S/files/screenshot.jpg", "length": 25438, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001S/files/trajectory.bin", "length": 775835136, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 5001, "atoms": 12928}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_01.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_02.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_03.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_04.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_05.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_06.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_07.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_08.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_09.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_10.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001S/files/structure.pdb", "length": 1047203, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001S/files/trajectory.xtc", "length": 245866088, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_00.jpg", "length": 24873, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_01.jpg", "length": 25249, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_02.jpg", "length": 25305, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_03.jpg", "length": 25250, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_04.jpg", "length": 25886, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_05.jpg", "length": 25552, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_06.jpg", "length": 25675, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_07.jpg", "length": 25628, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_08.jpg", "length": 25645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_09.jpg", "length": 25490, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_10.jpg", "length": 25948, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_11.jpg", "length": 25716, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_12.jpg", "length": 25512, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_13.jpg", "length": 25236, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_14.jpg", "length": 25661, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_15.jpg", "length": 26130, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_16.jpg", "length": 25500, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_17.jpg", "length": 25496, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_18.jpg", "length": 25489, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_19.jpg", "length": 25402, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_20.jpg", "length": 25750, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_21.jpg", "length": 25754, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_00.jpg", "length": 23711, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_01.jpg", "length": 23802, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_02.jpg", "length": 24165, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_03.jpg", "length": 24111, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_04.jpg", "length": 24321, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_05.jpg", "length": 23916, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_06.jpg", "length": 24051, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_07.jpg", "length": 23888, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_08.jpg", "length": 23715, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_09.jpg", "length": 23731, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_10.jpg", "length": 23848, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_11.jpg", "length": 23909, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_12.jpg", "length": 24132, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_13.jpg", "length": 23969, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_14.jpg", "length": 24069, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_15.jpg", "length": 24041, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_16.jpg", "length": 23863, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_17.jpg", "length": 24095, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_18.jpg", "length": 24165, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_00.jpg", "length": 25206, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_01.jpg", "length": 24821, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_02.jpg", "length": 25082, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_03.jpg", "length": 25114, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_04.jpg", "length": 24751, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_05.jpg", "length": 25199, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_06.jpg", "length": 25356, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_07.jpg", "length": 25426, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_08.jpg", "length": 25200, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_09.jpg", "length": 25645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_10.jpg", "length": 25113, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_11.jpg", "length": 25189, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_12.jpg", "length": 25289, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_13.jpg", "length": 24803, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_14.jpg", "length": 25023, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_15.jpg", "length": 25195, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_16.jpg", "length": 24979, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_17.jpg", "length": 25258, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_18.jpg", "length": 25457, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_19.jpg", "length": 25407, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_00.jpg", "length": 25383, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_01.jpg", "length": 25243, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_02.jpg", "length": 25042, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_03.jpg", "length": 25274, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_04.jpg", "length": 25631, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_05.jpg", "length": 25299, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_06.jpg", "length": 24962, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_07.jpg", "length": 25432, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_08.jpg", "length": 25628, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_09.jpg", "length": 25906, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_10.jpg", "length": 25568, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_11.jpg", "length": 26181, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_12.jpg", "length": 25680, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_13.jpg", "length": 25704, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_14.jpg", "length": 25867, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_15.jpg", "length": 25507, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_16.jpg", "length": 25645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_17.jpg", "length": 25595, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_18.jpg", "length": 25631, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_19.jpg", "length": 25567, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_00.jpg", "length": 24733, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_01.jpg", "length": 24084, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_02.jpg", "length": 24288, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_03.jpg", "length": 24872, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_04.jpg", "length": 25105, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_05.jpg", "length": 24803, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_06.jpg", "length": 24729, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_07.jpg", "length": 24808, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_08.jpg", "length": 24758, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_09.jpg", "length": 24738, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_10.jpg", "length": 24749, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_11.jpg", "length": 24540, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_12.jpg", "length": 25008, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_13.jpg", "length": 24629, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_14.jpg", "length": 24998, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_15.jpg", "length": 25079, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_16.jpg", "length": 24523, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_17.jpg", "length": 24311, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_18.jpg", "length": 25285, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_19.jpg", "length": 24828, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_20.jpg", "length": 24649, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_00.jpg", "length": 24650, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_01.jpg", "length": 24485, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_02.jpg", "length": 24572, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_03.jpg", "length": 24645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_04.jpg", "length": 24498, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_05.jpg", "length": 24572, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_06.jpg", "length": 24359, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_07.jpg", "length": 24580, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_08.jpg", "length": 24437, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_09.jpg", "length": 24016, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_10.jpg", "length": 24851, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_11.jpg", "length": 24820, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_12.jpg", "length": 25012, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_13.jpg", "length": 24534, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_14.jpg", "length": 24740, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_15.jpg", "length": 24858, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_16.jpg", "length": 24824, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_17.jpg", "length": 24979, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_18.jpg", "length": 25043, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_19.jpg", "length": 25000, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_20.jpg", "length": 24626, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_21.jpg", "length": 24715, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_00.jpg", "length": 23983, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_01.jpg", "length": 23695, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_02.jpg", "length": 23997, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_03.jpg", "length": 24202, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_04.jpg", "length": 24346, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_05.jpg", "length": 24238, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_06.jpg", "length": 24107, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_07.jpg", "length": 24317, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_08.jpg", "length": 24238, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_09.jpg", "length": 24360, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_10.jpg", "length": 24071, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_11.jpg", "length": 24524, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_12.jpg", "length": 24129, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_13.jpg", "length": 24146, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_14.jpg", "length": 23948, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_15.jpg", "length": 24144, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_16.jpg", "length": 24446, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_17.jpg", "length": 24454, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_18.jpg", "length": 24476, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_00.jpg", "length": 23683, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_01.jpg", "length": 23922, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_02.jpg", "length": 24041, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_03.jpg", "length": 23885, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_04.jpg", "length": 24155, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_05.jpg", "length": 24089, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_06.jpg", "length": 24051, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_07.jpg", "length": 23919, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_08.jpg", "length": 24210, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_09.jpg", "length": 24130, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_10.jpg", "length": 24178, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_11.jpg", "length": 24180, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_12.jpg", "length": 23706, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_13.jpg", "length": 24216, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_14.jpg", "length": 24092, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_15.jpg", "length": 23829, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_16.jpg", "length": 24181, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_17.jpg", "length": 24504, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_18.jpg", "length": 23993, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_00.jpg", "length": 23660, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_01.jpg", "length": 23728, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_02.jpg", "length": 23827, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_03.jpg", "length": 24175, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_04.jpg", "length": 24304, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_05.jpg", "length": 24249, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_06.jpg", "length": 23978, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_07.jpg", "length": 23926, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_08.jpg", "length": 23505, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_09.jpg", "length": 23726, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_10.jpg", "length": 24065, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_11.jpg", "length": 23928, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_12.jpg", "length": 23987, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_13.jpg", "length": 24178, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_14.jpg", "length": 24307, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_15.jpg", "length": 24115, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_16.jpg", "length": 23971, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_17.jpg", "length": 24223, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_18.jpg", "length": 23848, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_19.jpg", "length": 24105, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_20.jpg", "length": 24075, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_21.jpg", "length": 23888, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_00.jpg", "length": 24459, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_01.jpg", "length": 24951, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_02.jpg", "length": 24633, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_03.jpg", "length": 24427, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_04.jpg", "length": 24836, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_05.jpg", "length": 24630, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_06.jpg", "length": 24930, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_07.jpg", "length": 24663, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_08.jpg", "length": 24236, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_09.jpg", "length": 24685, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_10.jpg", "length": 24890, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_11.jpg", "length": 24920, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_12.jpg", "length": 24916, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_13.jpg", "length": 25517, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_14.jpg", "length": 25184, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_15.jpg", "length": 24352, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_16.jpg", "length": 25109, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_17.jpg", "length": 24632, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_18.jpg", "length": 25077, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_19.jpg", "length": 25185, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_00.jpg", "length": 24025, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_01.jpg", "length": 24361, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_02.jpg", "length": 24251, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_03.jpg", "length": 24018, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_04.jpg", "length": 24046, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_05.jpg", "length": 24697, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_06.jpg", "length": 24636, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_07.jpg", "length": 24573, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_08.jpg", "length": 24002, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_09.jpg", "length": 24308, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_10.jpg", "length": 24336, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_11.jpg", "length": 24118, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_12.jpg", "length": 24674, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_13.jpg", "length": 24208, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_14.jpg", "length": 24465, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_15.jpg", "length": 24260, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_16.jpg", "length": 24651, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_17.jpg", "length": 24519, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_18.jpg", "length": 24322, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_19.jpg", "length": 24243, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_20.jpg", "length": 24331, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_00.jpg", "length": 24181, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_01.jpg", "length": 24287, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_02.jpg", "length": 24254, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_03.jpg", "length": 24804, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_04.jpg", "length": 24658, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_05.jpg", "length": 24321, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_06.jpg", "length": 24305, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_07.jpg", "length": 24213, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_08.jpg", "length": 24446, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_09.jpg", "length": 24359, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_10.jpg", "length": 24677, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_11.jpg", "length": 24556, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_12.jpg", "length": 24808, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_13.jpg", "length": 24699, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_14.jpg", "length": 24426, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_15.jpg", "length": 24524, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_16.jpg", "length": 24637, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_17.jpg", "length": 24551, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_18.jpg", "length": 24481, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_19.jpg", "length": 24310, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_00.jpg", "length": 22643, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_01.jpg", "length": 22445, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_02.jpg", "length": 22209, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_03.jpg", "length": 22318, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_04.jpg", "length": 22609, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_05.jpg", "length": 22334, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_06.jpg", "length": 22431, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_07.jpg", "length": 22255, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_08.jpg", "length": 22324, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_09.jpg", "length": 22611, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_10.jpg", "length": 22472, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_11.jpg", "length": 22175, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_12.jpg", "length": 22369, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_13.jpg", "length": 22231, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_14.jpg", "length": 22178, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_15.jpg", "length": 22645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_16.jpg", "length": 22545, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_17.jpg", "length": 22234, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_18.jpg", "length": 22404, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_19.jpg", "length": 22379, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_00.jpg", "length": 25424, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_01.jpg", "length": 25133, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_02.jpg", "length": 25497, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_03.jpg", "length": 24940, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_04.jpg", "length": 25162, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_05.jpg", "length": 25418, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_06.jpg", "length": 25566, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_07.jpg", "length": 25576, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_08.jpg", "length": 25570, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_09.jpg", "length": 25471, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_10.jpg", "length": 25483, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_11.jpg", "length": 25307, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_12.jpg", "length": 25670, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_13.jpg", "length": 25410, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_14.jpg", "length": 25655, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_15.jpg", "length": 25475, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_16.jpg", "length": 25560, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_17.jpg", "length": 25757, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_18.jpg", "length": 25734, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_19.jpg", "length": 25210, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_20.jpg", "length": 25563, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_21.jpg", "length": 25649, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_22.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_22.jpg", "length": 25766, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_23.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_23.jpg", "length": 25608, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_24.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_24.jpg", "length": 25881, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001S/files/pocket_01.pdb", "length": 13869, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001S/files/pocket_02.pdb", "length": 13199, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001S/files/pocket_03.pdb", "length": 12529, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001S/files/pocket_04.pdb", "length": 11725, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001S/files/pocket_05.pdb", "length": 10854, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001S/files/pocket_06.pdb", "length": 10452, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001S/files/pocket_07.pdb", "length": 9782, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001S/files/pocket_08.pdb", "length": 8643, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001S/files/pocket_09.pdb", "length": 8509, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001S/files/pocket_10.pdb", "length": 8241, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}]} +{"project_identifier": "A001S", "accession": "A001S", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "clusters-04", "clusters-05", "clusters-06", "clusters-07", "clusters-08", "clusters-09", "clusters-10", "clusters-11", "clusters-12", "clusters-13", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1RLB", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1RLB"], "FORCED_REFERENCES": null, "REFERENCES": ["P02766", "P02753"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["TGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE", "ERDCRVSSFRVKENFDKARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDENGHMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSCRLLNLDGTCADSYSFVFARDPSGFSPQVQKIVRQRQEELCLARQYRLIPHNGYC", "SKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE"], "NUCLSEQ": [], "DOMAINS": ["Transthyretin", "Retinol-binding protein 4", "Plasma retinol-binding protein(1-182)", "Plasma retinol-binding protein(1-181)", "Plasma retinol-binding protein(1-179)", "Plasma retinol-binding protein(1-176)"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 12928, "SYSTRES": 834, "PROTATS": 12928, "PROTRES": 834, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain A-chain D interaction", "agent_1": "chain A", "agent_2": "chain D", "selection_1": "chain A", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain A-chain E interaction", "agent_1": "chain A", "agent_2": "chain E", "selection_1": "chain A", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain A-chain F interaction", "agent_1": "chain A", "agent_2": "chain F", "selection_1": "chain A", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain D interaction", "agent_1": "chain B", "agent_2": "chain D", "selection_1": "chain B", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain B-chain E interaction", "agent_1": "chain B", "agent_2": "chain E", "selection_1": "chain B", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain B-chain F interaction", "agent_1": "chain B", "agent_2": "chain F", "selection_1": "chain B", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain C-chain D interaction", "agent_1": "chain C", "agent_2": "chain D", "selection_1": "chain C", "selection_2": "chain D", "type": "protein-protein"}, {"name": "chain C-chain E interaction", "agent_1": "chain C", "agent_2": "chain E", "selection_1": "chain C", "selection_2": "chain E", "type": "protein-protein"}, {"name": "chain C-chain F interaction", "agent_1": "chain C", "agent_2": "chain F", "selection_1": "chain C", "selection_2": "chain F", "type": "protein-protein"}, {"name": "chain D-chain F interaction", "agent_1": "chain D", "agent_2": "chain F", "selection_1": "chain D", "selection_2": "chain E", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 14.5995, "BOXSIZEY": 14.5995, "BOXSIZEZ": 10.3657, "mdName": "replica 1", "mdAtoms": 12928, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001S/files/topology.tpr", "length": 4033636, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001S/files/screenshot.jpg", "length": 25438, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001S/files/trajectory.bin", "length": 775835136, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 5001, "atoms": 12928}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_01.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_02.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_03.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_04.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_05.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_06.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_07.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_08.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_09.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001S/files/pca_trajectory_10.bin", "length": 600480, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0, "frames": 20, "atoms": 2502}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001S/files/structure.pdb", "length": 1047203, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001S/files/trajectory.xtc", "length": 245866088, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_00.jpg", "length": 24873, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_01.jpg", "length": 25249, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_02.jpg", "length": 25305, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_03.jpg", "length": 25250, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_04.jpg", "length": 25886, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_05.jpg", "length": 25552, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_06.jpg", "length": 25675, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_07.jpg", "length": 25628, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_08.jpg", "length": 25645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_09.jpg", "length": 25490, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_10.jpg", "length": 25948, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_11.jpg", "length": 25716, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_12.jpg", "length": 25512, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_13.jpg", "length": 25236, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_14.jpg", "length": 25661, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_15.jpg", "length": 26130, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_16.jpg", "length": 25500, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_17.jpg", "length": 25496, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_18.jpg", "length": 25489, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_19.jpg", "length": 25402, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_20.jpg", "length": 25750, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_00_screenshot_21.jpg", "length": 25754, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_00.jpg", "length": 23711, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_01.jpg", "length": 23802, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_02.jpg", "length": 24165, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_03.jpg", "length": 24111, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_04.jpg", "length": 24321, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_05.jpg", "length": 23916, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_06.jpg", "length": 24051, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_07.jpg", "length": 23888, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_08.jpg", "length": 23715, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_09.jpg", "length": 23731, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_10.jpg", "length": 23848, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_11.jpg", "length": 23909, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_12.jpg", "length": 24132, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_13.jpg", "length": 23969, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_14.jpg", "length": 24069, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_15.jpg", "length": 24041, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_16.jpg", "length": 23863, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_17.jpg", "length": 24095, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_01_screenshot_18.jpg", "length": 24165, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_00.jpg", "length": 25206, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_01.jpg", "length": 24821, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_02.jpg", "length": 25082, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_03.jpg", "length": 25114, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_04.jpg", "length": 24751, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_05.jpg", "length": 25199, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_06.jpg", "length": 25356, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_07.jpg", "length": 25426, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_08.jpg", "length": 25200, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_09.jpg", "length": 25645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_10.jpg", "length": 25113, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_11.jpg", "length": 25189, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_12.jpg", "length": 25289, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_13.jpg", "length": 24803, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_14.jpg", "length": 25023, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_15.jpg", "length": 25195, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_16.jpg", "length": 24979, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_17.jpg", "length": 25258, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_18.jpg", "length": 25457, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_02_screenshot_19.jpg", "length": 25407, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_00.jpg", "length": 25383, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_01.jpg", "length": 25243, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_02.jpg", "length": 25042, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_03.jpg", "length": 25274, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_04.jpg", "length": 25631, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_05.jpg", "length": 25299, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_06.jpg", "length": 24962, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_07.jpg", "length": 25432, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_08.jpg", "length": 25628, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_09.jpg", "length": 25906, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_10.jpg", "length": 25568, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_11.jpg", "length": 26181, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_12.jpg", "length": 25680, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_13.jpg", "length": 25704, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_14.jpg", "length": 25867, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_15.jpg", "length": 25507, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_16.jpg", "length": 25645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_17.jpg", "length": 25595, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_18.jpg", "length": 25631, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_03_screenshot_19.jpg", "length": 25567, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_00.jpg", "length": 24733, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_01.jpg", "length": 24084, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_02.jpg", "length": 24288, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_03.jpg", "length": 24872, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_04.jpg", "length": 25105, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_05.jpg", "length": 24803, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_06.jpg", "length": 24729, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_07.jpg", "length": 24808, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_08.jpg", "length": 24758, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_09.jpg", "length": 24738, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_10.jpg", "length": 24749, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_11.jpg", "length": 24540, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_12.jpg", "length": 25008, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_13.jpg", "length": 24629, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_14.jpg", "length": 24998, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_15.jpg", "length": 25079, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_16.jpg", "length": 24523, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_17.jpg", "length": 24311, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_18.jpg", "length": 25285, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_19.jpg", "length": 24828, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_04_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_04_screenshot_20.jpg", "length": 24649, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_00.jpg", "length": 24650, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_01.jpg", "length": 24485, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_02.jpg", "length": 24572, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_03.jpg", "length": 24645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_04.jpg", "length": 24498, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_05.jpg", "length": 24572, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_06.jpg", "length": 24359, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_07.jpg", "length": 24580, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_08.jpg", "length": 24437, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_09.jpg", "length": 24016, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_10.jpg", "length": 24851, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_11.jpg", "length": 24820, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_12.jpg", "length": 25012, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_13.jpg", "length": 24534, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_14.jpg", "length": 24740, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_15.jpg", "length": 24858, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_16.jpg", "length": 24824, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_17.jpg", "length": 24979, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_18.jpg", "length": 25043, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_19.jpg", "length": 25000, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_20.jpg", "length": 24626, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_05_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_05_screenshot_21.jpg", "length": 24715, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_00.jpg", "length": 23983, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_01.jpg", "length": 23695, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_02.jpg", "length": 23997, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_03.jpg", "length": 24202, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_04.jpg", "length": 24346, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_05.jpg", "length": 24238, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_06.jpg", "length": 24107, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_07.jpg", "length": 24317, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_08.jpg", "length": 24238, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_09.jpg", "length": 24360, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_10.jpg", "length": 24071, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_11.jpg", "length": 24524, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_12.jpg", "length": 24129, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_13.jpg", "length": 24146, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_14.jpg", "length": 23948, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_15.jpg", "length": 24144, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_16.jpg", "length": 24446, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_17.jpg", "length": 24454, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_06_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_06_screenshot_18.jpg", "length": 24476, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_00.jpg", "length": 23683, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_01.jpg", "length": 23922, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_02.jpg", "length": 24041, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_03.jpg", "length": 23885, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_04.jpg", "length": 24155, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_05.jpg", "length": 24089, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_06.jpg", "length": 24051, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_07.jpg", "length": 23919, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_08.jpg", "length": 24210, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_09.jpg", "length": 24130, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_10.jpg", "length": 24178, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_11.jpg", "length": 24180, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_12.jpg", "length": 23706, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_13.jpg", "length": 24216, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_14.jpg", "length": 24092, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_15.jpg", "length": 23829, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_16.jpg", "length": 24181, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_17.jpg", "length": 24504, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_07_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_07_screenshot_18.jpg", "length": 23993, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_00.jpg", "length": 23660, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_01.jpg", "length": 23728, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_02.jpg", "length": 23827, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_03.jpg", "length": 24175, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_04.jpg", "length": 24304, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_05.jpg", "length": 24249, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_06.jpg", "length": 23978, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_07.jpg", "length": 23926, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_08.jpg", "length": 23505, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_09.jpg", "length": 23726, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_10.jpg", "length": 24065, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_11.jpg", "length": 23928, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_12.jpg", "length": 23987, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_13.jpg", "length": 24178, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_14.jpg", "length": 24307, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_15.jpg", "length": 24115, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_16.jpg", "length": 23971, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_17.jpg", "length": 24223, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_18.jpg", "length": 23848, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_19.jpg", "length": 24105, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_20.jpg", "length": 24075, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_08_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_08_screenshot_21.jpg", "length": 23888, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_00.jpg", "length": 24459, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_01.jpg", "length": 24951, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_02.jpg", "length": 24633, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_03.jpg", "length": 24427, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_04.jpg", "length": 24836, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_05.jpg", "length": 24630, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_06.jpg", "length": 24930, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_07.jpg", "length": 24663, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_08.jpg", "length": 24236, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_09.jpg", "length": 24685, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_10.jpg", "length": 24890, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_11.jpg", "length": 24920, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_12.jpg", "length": 24916, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_13.jpg", "length": 25517, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_14.jpg", "length": 25184, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_15.jpg", "length": 24352, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_16.jpg", "length": 25109, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_17.jpg", "length": 24632, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_18.jpg", "length": 25077, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_09_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_09_screenshot_19.jpg", "length": 25185, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_00.jpg", "length": 24025, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_01.jpg", "length": 24361, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_02.jpg", "length": 24251, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_03.jpg", "length": 24018, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_04.jpg", "length": 24046, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_05.jpg", "length": 24697, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_06.jpg", "length": 24636, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_07.jpg", "length": 24573, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_08.jpg", "length": 24002, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_09.jpg", "length": 24308, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_10.jpg", "length": 24336, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_11.jpg", "length": 24118, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_12.jpg", "length": 24674, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_13.jpg", "length": 24208, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_14.jpg", "length": 24465, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_15.jpg", "length": 24260, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_16.jpg", "length": 24651, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_17.jpg", "length": 24519, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_18.jpg", "length": 24322, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_19.jpg", "length": 24243, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_10_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_10_screenshot_20.jpg", "length": 24331, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_00.jpg", "length": 24181, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_01.jpg", "length": 24287, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_02.jpg", "length": 24254, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_03.jpg", "length": 24804, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_04.jpg", "length": 24658, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_05.jpg", "length": 24321, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_06.jpg", "length": 24305, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_07.jpg", "length": 24213, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_08.jpg", "length": 24446, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_09.jpg", "length": 24359, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_10.jpg", "length": 24677, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_11.jpg", "length": 24556, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_12.jpg", "length": 24808, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_13.jpg", "length": 24699, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_14.jpg", "length": 24426, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_15.jpg", "length": 24524, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_16.jpg", "length": 24637, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_17.jpg", "length": 24551, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_18.jpg", "length": 24481, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_11_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_11_screenshot_19.jpg", "length": 24310, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_00.jpg", "length": 22643, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_01.jpg", "length": 22445, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_02.jpg", "length": 22209, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_03.jpg", "length": 22318, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_04.jpg", "length": 22609, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_05.jpg", "length": 22334, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_06.jpg", "length": 22431, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_07.jpg", "length": 22255, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_08.jpg", "length": 22324, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_09.jpg", "length": 22611, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_10.jpg", "length": 22472, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_11.jpg", "length": 22175, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_12.jpg", "length": 22369, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_13.jpg", "length": 22231, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_14.jpg", "length": 22178, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_15.jpg", "length": 22645, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_16.jpg", "length": 22545, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_17.jpg", "length": 22234, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_18.jpg", "length": 22404, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_12_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_12_screenshot_19.jpg", "length": 22379, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_00.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_00.jpg", "length": 25424, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_01.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_01.jpg", "length": 25133, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_02.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_02.jpg", "length": 25497, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_03.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_03.jpg", "length": 24940, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_04.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_04.jpg", "length": 25162, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_05.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_05.jpg", "length": 25418, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_06.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_06.jpg", "length": 25566, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_07.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_07.jpg", "length": 25576, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_08.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_08.jpg", "length": 25570, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_09.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_09.jpg", "length": 25471, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_10.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_10.jpg", "length": 25483, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_11.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_11.jpg", "length": 25307, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_12.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_12.jpg", "length": 25670, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_13.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_13.jpg", "length": 25410, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_14.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_14.jpg", "length": 25655, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_15.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_15.jpg", "length": 25475, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_16.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_16.jpg", "length": 25560, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_17.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_17.jpg", "length": 25757, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_18.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_18.jpg", "length": 25734, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_19.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_19.jpg", "length": 25210, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_20.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_20.jpg", "length": 25563, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_21.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_21.jpg", "length": 25649, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_22.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_22.jpg", "length": 25766, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_23.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_23.jpg", "length": 25608, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "clusters_13_screenshot_24.jpg", "downloadUrl": "/projects/A001S/files/clusters_13_screenshot_24.jpg", "length": 25881, "contentType": "application/octet-stream", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001S/files/pocket_01.pdb", "length": 13869, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001S/files/pocket_02.pdb", "length": 13199, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001S/files/pocket_03.pdb", "length": 12529, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001S/files/pocket_04.pdb", "length": 11725, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001S/files/pocket_05.pdb", "length": 10854, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001S/files/pocket_06.pdb", "length": 10452, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001S/files/pocket_07.pdb", "length": 9782, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001S/files/pocket_08.pdb", "length": 8643, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001S/files/pocket_09.pdb", "length": 8509, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001S/files/pocket_10.pdb", "length": 8241, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6396821889b377defe7a", "md": 0}}]} diff --git a/data/files/A001T/project.json b/data/files/A001T/project.json new file mode 100644 index 0000000000000000000000000000000000000000..9b466194f7e9ae502b6a923c77e0c72e5c26c366 --- /dev/null +++ b/data/files/A001T/project.json @@ -0,0 +1,258 @@ +{ + "accession": "A001T", + "published": true, + "metadata": { + "NAME": "Dynarepo 1RVJ", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1RVJ" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P0C0Y8", + "P0C0Y9", + "P0C0Y7" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMAHFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKR", + "AEYQNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGGERELEQIADRGTAAERAALFWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQNH", + "ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHENTFFRDLVGYSIGTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGING" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Reaction center protein L chain", + "Reaction center protein M chain", + "Reaction center protein H chain" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 12773, + "SYSTRES": 820, + "PROTATS": 12773, + "PROTRES": 820, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + }, + { + "name": "chain A-chain C interaction", + "agent_1": "chain A", + "agent_2": "chain C", + "selection_1": "chain A", + "selection_2": "chain C", + "type": "protein-protein" + }, + { + "name": "chain B-chain C interaction", + "agent_1": "chain B", + "agent_2": "chain C", + "selection_1": "chain B", + "selection_2": "chain C", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 11.5142, + "BOXSIZEY": 11.5142, + "BOXSIZEZ": 8.15311, + "mdName": "replica 1", + "mdAtoms": 12773, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_00_screenshot_21.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_02_screenshot_00.jpg", + "clusters_02_screenshot_01.jpg", + "clusters_02_screenshot_02.jpg", + "clusters_02_screenshot_03.jpg", + "clusters_02_screenshot_04.jpg", + "clusters_02_screenshot_05.jpg", + "clusters_02_screenshot_06.jpg", + "clusters_02_screenshot_07.jpg", + "clusters_02_screenshot_08.jpg", + "clusters_02_screenshot_09.jpg", + "clusters_02_screenshot_10.jpg", + "clusters_02_screenshot_11.jpg", + "clusters_02_screenshot_12.jpg", + "clusters_02_screenshot_13.jpg", + "clusters_02_screenshot_14.jpg", + "clusters_02_screenshot_15.jpg", + "clusters_02_screenshot_16.jpg", + "clusters_02_screenshot_17.jpg", + "clusters_02_screenshot_18.jpg", + "clusters_02_screenshot_19.jpg", + "clusters_03_screenshot_00.jpg", + "clusters_03_screenshot_01.jpg", + "clusters_03_screenshot_02.jpg", + "clusters_03_screenshot_03.jpg", + "clusters_03_screenshot_04.jpg", + "clusters_03_screenshot_05.jpg", + "clusters_03_screenshot_06.jpg", + "clusters_03_screenshot_07.jpg", + "clusters_03_screenshot_08.jpg", + "clusters_03_screenshot_09.jpg", + "clusters_03_screenshot_10.jpg", + "clusters_03_screenshot_11.jpg", + "clusters_03_screenshot_12.jpg", + "clusters_03_screenshot_13.jpg", + "clusters_03_screenshot_14.jpg", + "clusters_03_screenshot_15.jpg", + "clusters_03_screenshot_16.jpg", + "clusters_03_screenshot_17.jpg", + "clusters_03_screenshot_18.jpg", + "clusters_03_screenshot_19.jpg", + "clusters_03_screenshot_20.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "clusters-02", + "clusters-03", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f667c3ce8d08dfc82310c", + "creationDate": "2025-06-03T21:17:48.000Z", + "identifier": "A001T" +} \ No newline at end of file diff --git a/data/files/A001T/records.jsonl b/data/files/A001T/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..ca285ad26d6dffad53871e82969b617250b0ae93 --- /dev/null +++ b/data/files/A001T/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001T", "accession": "A001T", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1RVJ", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1RVJ"], "FORCED_REFERENCES": null, "REFERENCES": ["P0C0Y8", "P0C0Y9", "P0C0Y7"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMAHFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKR", "AEYQNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGGERELEQIADRGTAAERAALFWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQNH", "ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHENTFFRDLVGYSIGTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGING"], "NUCLSEQ": [], "DOMAINS": ["Reaction center protein L chain", "Reaction center protein M chain", "Reaction center protein H chain"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 12773, "SYSTRES": 820, "PROTATS": 12773, "PROTRES": 820, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.5142, "BOXSIZEY": 11.5142, "BOXSIZEZ": 8.15311, "mdName": "replica 1", "mdAtoms": 12773, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001T/files/topology.tpr", "length": 3738464, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001T/files/screenshot.jpg", "length": 31411, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001T/files/trajectory.bin", "length": 766533276, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 5001, "atoms": 12773}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_01.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_02.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_03.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_04.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_05.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_06.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_07.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_08.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_09.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_10.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_11.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_12.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001T/files/structure.pdb", "length": 1034648, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001T/files/trajectory.xtc", "length": 241746160, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_00.jpg", "length": 32587, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_01.jpg", "length": 32729, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_02.jpg", "length": 32101, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_03.jpg", "length": 32601, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_04.jpg", "length": 33058, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_05.jpg", "length": 32804, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_06.jpg", "length": 32252, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_07.jpg", "length": 31862, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_08.jpg", "length": 32244, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_09.jpg", "length": 31794, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_10.jpg", "length": 31982, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_11.jpg", "length": 32140, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_12.jpg", "length": 31622, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_13.jpg", "length": 33478, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_14.jpg", "length": 32323, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_15.jpg", "length": 32570, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_16.jpg", "length": 32803, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_17.jpg", "length": 32976, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_18.jpg", "length": 32620, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_19.jpg", "length": 32793, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_20.jpg", "length": 33174, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_21.jpg", "length": 32731, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_00.jpg", "length": 32214, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_01.jpg", "length": 32255, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_02.jpg", "length": 32522, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_03.jpg", "length": 32977, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_04.jpg", "length": 32461, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_05.jpg", "length": 32496, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_06.jpg", "length": 32266, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_07.jpg", "length": 32267, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_08.jpg", "length": 33138, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_09.jpg", "length": 32187, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_10.jpg", "length": 32108, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_11.jpg", "length": 32593, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_12.jpg", "length": 32921, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_13.jpg", "length": 32877, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_14.jpg", "length": 33374, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_15.jpg", "length": 32701, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_16.jpg", "length": 32725, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_17.jpg", "length": 32361, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_18.jpg", "length": 33292, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_19.jpg", "length": 32616, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_00.jpg", "length": 33043, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_01.jpg", "length": 32724, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_02.jpg", "length": 32842, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_03.jpg", "length": 32474, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_04.jpg", "length": 32383, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_05.jpg", "length": 32892, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_06.jpg", "length": 32596, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_07.jpg", "length": 32501, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_08.jpg", "length": 32981, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_09.jpg", "length": 32694, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_10.jpg", "length": 32205, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_11.jpg", "length": 32213, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_12.jpg", "length": 31768, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_13.jpg", "length": 32154, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_14.jpg", "length": 32302, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_15.jpg", "length": 33260, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_16.jpg", "length": 33141, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_17.jpg", "length": 33014, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_18.jpg", "length": 32699, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_19.jpg", "length": 33131, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_00.jpg", "length": 32262, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_01.jpg", "length": 31593, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_02.jpg", "length": 32113, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_03.jpg", "length": 32462, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_04.jpg", "length": 31913, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_05.jpg", "length": 32169, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_06.jpg", "length": 31507, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_07.jpg", "length": 31734, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_08.jpg", "length": 31988, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_09.jpg", "length": 31280, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_10.jpg", "length": 31702, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_11.jpg", "length": 31513, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_12.jpg", "length": 31128, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_13.jpg", "length": 31489, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_14.jpg", "length": 31321, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_15.jpg", "length": 31208, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_16.jpg", "length": 31510, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_17.jpg", "length": 31628, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_18.jpg", "length": 31335, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_19.jpg", "length": 31414, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_20.jpg", "length": 31693, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001T/files/pocket_01.pdb", "length": 87569, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001T/files/pocket_02.pdb", "length": 32160, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001T/files/pocket_03.pdb", "length": 23450, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001T/files/pocket_04.pdb", "length": 21239, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001T/files/pocket_05.pdb", "length": 20636, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001T/files/pocket_06.pdb", "length": 14003, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001T/files/pocket_07.pdb", "length": 13936, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001T/files/pocket_08.pdb", "length": 10720, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001T/files/pocket_09.pdb", "length": 10385, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001T/files/pocket_10.pdb", "length": 10318, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}]} +{"project_identifier": "A001T", "accession": "A001T", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1RVJ", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1RVJ"], "FORCED_REFERENCES": null, "REFERENCES": ["P0C0Y8", "P0C0Y9", "P0C0Y7"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMAHFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKR", "AEYQNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGGERELEQIADRGTAAERAALFWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQNH", "ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHENTFFRDLVGYSIGTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGING"], "NUCLSEQ": [], "DOMAINS": ["Reaction center protein L chain", "Reaction center protein M chain", "Reaction center protein H chain"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 12773, "SYSTRES": 820, "PROTATS": 12773, "PROTRES": 820, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.5142, "BOXSIZEY": 11.5142, "BOXSIZEZ": 8.15311, "mdName": "replica 1", "mdAtoms": 12773, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001T/files/topology.tpr", "length": 3738464, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001T/files/screenshot.jpg", "length": 31411, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001T/files/trajectory.bin", "length": 766533276, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 5001, "atoms": 12773}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_01.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_02.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_03.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_04.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_05.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_06.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_07.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_08.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_09.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_10.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_11.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_12.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001T/files/structure.pdb", "length": 1034648, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001T/files/trajectory.xtc", "length": 241746160, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_00.jpg", "length": 32587, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_01.jpg", "length": 32729, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_02.jpg", "length": 32101, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_03.jpg", "length": 32601, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_04.jpg", "length": 33058, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_05.jpg", "length": 32804, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_06.jpg", "length": 32252, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_07.jpg", "length": 31862, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_08.jpg", "length": 32244, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_09.jpg", "length": 31794, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_10.jpg", "length": 31982, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_11.jpg", "length": 32140, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_12.jpg", "length": 31622, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_13.jpg", "length": 33478, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_14.jpg", "length": 32323, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_15.jpg", "length": 32570, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_16.jpg", "length": 32803, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_17.jpg", "length": 32976, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_18.jpg", "length": 32620, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_19.jpg", "length": 32793, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_20.jpg", "length": 33174, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_21.jpg", "length": 32731, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_00.jpg", "length": 32214, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_01.jpg", "length": 32255, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_02.jpg", "length": 32522, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_03.jpg", "length": 32977, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_04.jpg", "length": 32461, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_05.jpg", "length": 32496, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_06.jpg", "length": 32266, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_07.jpg", "length": 32267, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_08.jpg", "length": 33138, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_09.jpg", "length": 32187, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_10.jpg", "length": 32108, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_11.jpg", "length": 32593, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_12.jpg", "length": 32921, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_13.jpg", "length": 32877, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_14.jpg", "length": 33374, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_15.jpg", "length": 32701, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_16.jpg", "length": 32725, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_17.jpg", "length": 32361, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_18.jpg", "length": 33292, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_19.jpg", "length": 32616, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_00.jpg", "length": 33043, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_01.jpg", "length": 32724, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_02.jpg", "length": 32842, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_03.jpg", "length": 32474, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_04.jpg", "length": 32383, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_05.jpg", "length": 32892, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_06.jpg", "length": 32596, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_07.jpg", "length": 32501, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_08.jpg", "length": 32981, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_09.jpg", "length": 32694, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_10.jpg", "length": 32205, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_11.jpg", "length": 32213, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_12.jpg", "length": 31768, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_13.jpg", "length": 32154, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_14.jpg", "length": 32302, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_15.jpg", "length": 33260, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_16.jpg", "length": 33141, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_17.jpg", "length": 33014, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_18.jpg", "length": 32699, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_19.jpg", "length": 33131, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_00.jpg", "length": 32262, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_01.jpg", "length": 31593, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_02.jpg", "length": 32113, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_03.jpg", "length": 32462, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_04.jpg", "length": 31913, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_05.jpg", "length": 32169, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_06.jpg", "length": 31507, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_07.jpg", "length": 31734, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_08.jpg", "length": 31988, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_09.jpg", "length": 31280, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_10.jpg", "length": 31702, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_11.jpg", "length": 31513, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_12.jpg", "length": 31128, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_13.jpg", "length": 31489, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_14.jpg", "length": 31321, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_15.jpg", "length": 31208, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_16.jpg", "length": 31510, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_17.jpg", "length": 31628, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_18.jpg", "length": 31335, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_19.jpg", "length": 31414, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_20.jpg", "length": 31693, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001T/files/pocket_01.pdb", "length": 87569, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001T/files/pocket_02.pdb", "length": 32160, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001T/files/pocket_03.pdb", "length": 23450, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001T/files/pocket_04.pdb", "length": 21239, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001T/files/pocket_05.pdb", "length": 20636, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001T/files/pocket_06.pdb", "length": 14003, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001T/files/pocket_07.pdb", "length": 13936, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001T/files/pocket_08.pdb", "length": 10720, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001T/files/pocket_09.pdb", "length": 10385, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001T/files/pocket_10.pdb", "length": 10318, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}]} +{"project_identifier": "A001T", "accession": "A001T", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "clusters-02", "clusters-03", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1RVJ", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1RVJ"], "FORCED_REFERENCES": null, "REFERENCES": ["P0C0Y8", "P0C0Y9", "P0C0Y7"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMAHFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKR", "AEYQNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGGERELEQIADRGTAAERAALFWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQNH", "ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHENTFFRDLVGYSIGTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGING"], "NUCLSEQ": [], "DOMAINS": ["Reaction center protein L chain", "Reaction center protein M chain", "Reaction center protein H chain"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 12773, "SYSTRES": 820, "PROTATS": 12773, "PROTRES": 820, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}, {"name": "chain A-chain C interaction", "agent_1": "chain A", "agent_2": "chain C", "selection_1": "chain A", "selection_2": "chain C", "type": "protein-protein"}, {"name": "chain B-chain C interaction", "agent_1": "chain B", "agent_2": "chain C", "selection_1": "chain B", "selection_2": "chain C", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 11.5142, "BOXSIZEY": 11.5142, "BOXSIZEZ": 8.15311, "mdName": "replica 1", "mdAtoms": 12773, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001T/files/topology.tpr", "length": 3738464, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001T/files/screenshot.jpg", "length": 31411, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001T/files/trajectory.bin", "length": 766533276, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 5001, "atoms": 12773}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_01.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_02.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_03.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_04.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_05.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_06.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_07.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_08.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_09.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_10.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_11.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001T/files/pca_trajectory_12.bin", "length": 590400, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0, "frames": 20, "atoms": 2460}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001T/files/structure.pdb", "length": 1034648, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001T/files/trajectory.xtc", "length": 241746160, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_00.jpg", "length": 32587, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_01.jpg", "length": 32729, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_02.jpg", "length": 32101, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_03.jpg", "length": 32601, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_04.jpg", "length": 33058, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_05.jpg", "length": 32804, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_06.jpg", "length": 32252, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_07.jpg", "length": 31862, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_08.jpg", "length": 32244, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_09.jpg", "length": 31794, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_10.jpg", "length": 31982, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_11.jpg", "length": 32140, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_12.jpg", "length": 31622, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_13.jpg", "length": 33478, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_14.jpg", "length": 32323, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_15.jpg", "length": 32570, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_16.jpg", "length": 32803, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_17.jpg", "length": 32976, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_18.jpg", "length": 32620, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_19.jpg", "length": 32793, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_20.jpg", "length": 33174, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001T/files/clusters_00_screenshot_21.jpg", "length": 32731, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_00.jpg", "length": 32214, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_01.jpg", "length": 32255, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_02.jpg", "length": 32522, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_03.jpg", "length": 32977, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_04.jpg", "length": 32461, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_05.jpg", "length": 32496, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_06.jpg", "length": 32266, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_07.jpg", "length": 32267, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_08.jpg", "length": 33138, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_09.jpg", "length": 32187, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_10.jpg", "length": 32108, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_11.jpg", "length": 32593, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_12.jpg", "length": 32921, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_13.jpg", "length": 32877, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_14.jpg", "length": 33374, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_15.jpg", "length": 32701, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_16.jpg", "length": 32725, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_17.jpg", "length": 32361, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_18.jpg", "length": 33292, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_01_screenshot_19.jpg", "length": 32616, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_00.jpg", "length": 33043, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_01.jpg", "length": 32724, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_02.jpg", "length": 32842, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_03.jpg", "length": 32474, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_04.jpg", "length": 32383, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_05.jpg", "length": 32892, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_06.jpg", "length": 32596, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_07.jpg", "length": 32501, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_08.jpg", "length": 32981, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_09.jpg", "length": 32694, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_10.jpg", "length": 32205, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_11.jpg", "length": 32213, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_12.jpg", "length": 31768, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_13.jpg", "length": 32154, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_14.jpg", "length": 32302, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_15.jpg", "length": 33260, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_16.jpg", "length": 33141, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_17.jpg", "length": 33014, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_18.jpg", "length": 32699, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_02_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_02_screenshot_19.jpg", "length": 33131, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_00.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_00.jpg", "length": 32262, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_01.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_01.jpg", "length": 31593, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_02.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_02.jpg", "length": 32113, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_03.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_03.jpg", "length": 32462, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_04.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_04.jpg", "length": 31913, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_05.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_05.jpg", "length": 32169, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_06.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_06.jpg", "length": 31507, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_07.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_07.jpg", "length": 31734, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_08.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_08.jpg", "length": 31988, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_09.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_09.jpg", "length": 31280, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_10.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_10.jpg", "length": 31702, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_11.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_11.jpg", "length": 31513, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_12.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_12.jpg", "length": 31128, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_13.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_13.jpg", "length": 31489, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_14.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_14.jpg", "length": 31321, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_15.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_15.jpg", "length": 31208, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_16.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_16.jpg", "length": 31510, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_17.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_17.jpg", "length": 31628, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_18.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_18.jpg", "length": 31335, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_19.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_19.jpg", "length": 31414, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "clusters_03_screenshot_20.jpg", "downloadUrl": "/projects/A001T/files/clusters_03_screenshot_20.jpg", "length": 31693, "contentType": "application/octet-stream", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001T/files/pocket_01.pdb", "length": 87569, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001T/files/pocket_02.pdb", "length": 32160, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001T/files/pocket_03.pdb", "length": 23450, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001T/files/pocket_04.pdb", "length": 21239, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001T/files/pocket_05.pdb", "length": 20636, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001T/files/pocket_06.pdb", "length": 14003, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001T/files/pocket_07.pdb", "length": 13936, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001T/files/pocket_08.pdb", "length": 10720, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_09.pdb", "downloadUrl": "/projects/A001T/files/pocket_09.pdb", "length": 10385, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}, {"name": "pocket_10.pdb", "downloadUrl": "/projects/A001T/files/pocket_10.pdb", "length": 10318, "contentType": "chemical/x-pdb", "metadata": {"project": "683f667c3ce8d08dfc82310c", "md": 0}}]} diff --git a/data/files/A001U/project.json b/data/files/A001U/project.json new file mode 100644 index 0000000000000000000000000000000000000000..72d2e9d3712bd1a0c1959377e70422eae399a79b --- /dev/null +++ b/data/files/A001U/project.json @@ -0,0 +1,195 @@ +{ + "accession": "A001U", + "published": true, + "metadata": { + "NAME": "Dynarepo 1RY7", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1RY7" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P05230", + "P22607" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "EITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQTPNEECLFLERLEENHYNTYISKKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFLPLPVSSD", + "APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Fibroblast growth factor 1", + "Heparin-binding", + "Nuclear localization signal", + "Fibroblast growth factor receptor 3", + "Ig-like C2-type 2", + "Ig-like C2-type 3", + "Disordered" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 5689, + "SYSTRES": 364, + "PROTATS": 5689, + "PROTRES": 364, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 12.4758, + "BOXSIZEY": 12.4758, + "BOXSIZEZ": 8.76405, + "mdName": "replica 1", + "mdAtoms": 5689, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_00_screenshot_21.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_01_screenshot_20.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f68a0fc41b010274857a3", + "creationDate": "2025-06-03T21:26:56.000Z", + "identifier": "A001U" +} \ No newline at end of file diff --git a/data/files/A001U/records.jsonl b/data/files/A001U/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..65eebee0cb487e16ebe648a3fae7f77e757d4bd1 --- /dev/null +++ b/data/files/A001U/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001U", "accession": "A001U", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1RY7", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1RY7"], "FORCED_REFERENCES": null, "REFERENCES": ["P05230", "P22607"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["EITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQTPNEECLFLERLEENHYNTYISKKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFLPLPVSSD", "APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE"], "NUCLSEQ": [], "DOMAINS": ["Fibroblast growth factor 1", "Heparin-binding", "Nuclear localization signal", "Fibroblast growth factor receptor 3", "Ig-like C2-type 2", "Ig-like C2-type 3", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 5689, "SYSTRES": 364, "PROTATS": 5689, "PROTRES": 364, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.4758, "BOXSIZEY": 12.4758, "BOXSIZEZ": 8.76405, "mdName": "replica 1", "mdAtoms": 5689, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001U/files/topology.tpr", "length": 1986244, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001U/files/screenshot.jpg", "length": 18889, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001U/files/trajectory.bin", "length": 341408268, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 5001, "atoms": 5689}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_01.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_02.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_03.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_04.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_05.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_06.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_07.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_08.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_09.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_10.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_11.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_12.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001U/files/structure.pdb", "length": 460844, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001U/files/trajectory.xtc", "length": 108504300, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_00.jpg", "length": 20513, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_01.jpg", "length": 19871, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_02.jpg", "length": 20094, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_03.jpg", "length": 19950, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_04.jpg", "length": 19744, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_05.jpg", "length": 20350, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_06.jpg", "length": 20178, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_07.jpg", "length": 20272, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_08.jpg", "length": 20352, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_09.jpg", "length": 20070, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_10.jpg", "length": 19741, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_11.jpg", "length": 20068, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_12.jpg", "length": 19913, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_13.jpg", "length": 20143, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_14.jpg", "length": 20473, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_15.jpg", "length": 20118, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_16.jpg", "length": 20234, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_17.jpg", "length": 20385, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_18.jpg", "length": 19939, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_19.jpg", "length": 20282, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_20.jpg", "length": 19832, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_21.jpg", "length": 20272, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_00.jpg", "length": 18777, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_01.jpg", "length": 19109, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_02.jpg", "length": 19153, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_03.jpg", "length": 19064, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_04.jpg", "length": 18776, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_05.jpg", "length": 18901, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_06.jpg", "length": 18905, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_07.jpg", "length": 18867, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_08.jpg", "length": 18941, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_09.jpg", "length": 18976, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_10.jpg", "length": 18491, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_11.jpg", "length": 19072, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_12.jpg", "length": 19213, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_13.jpg", "length": 18790, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_14.jpg", "length": 19119, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_15.jpg", "length": 19300, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_16.jpg", "length": 19430, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_17.jpg", "length": 19045, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_18.jpg", "length": 19031, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_19.jpg", "length": 18792, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_20.jpg", "length": 19120, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001U/files/pocket_01.pdb", "length": 25929, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001U/files/pocket_02.pdb", "length": 15276, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001U/files/pocket_03.pdb", "length": 8777, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}]} +{"project_identifier": "A001U", "accession": "A001U", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1RY7", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1RY7"], "FORCED_REFERENCES": null, "REFERENCES": ["P05230", "P22607"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["EITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQTPNEECLFLERLEENHYNTYISKKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFLPLPVSSD", "APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE"], "NUCLSEQ": [], "DOMAINS": ["Fibroblast growth factor 1", "Heparin-binding", "Nuclear localization signal", "Fibroblast growth factor receptor 3", "Ig-like C2-type 2", "Ig-like C2-type 3", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 5689, "SYSTRES": 364, "PROTATS": 5689, "PROTRES": 364, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.4758, "BOXSIZEY": 12.4758, "BOXSIZEZ": 8.76405, "mdName": "replica 1", "mdAtoms": 5689, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001U/files/topology.tpr", "length": 1986244, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001U/files/screenshot.jpg", "length": 18889, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001U/files/trajectory.bin", "length": 341408268, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 5001, "atoms": 5689}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_01.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_02.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_03.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_04.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_05.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_06.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_07.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_08.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_09.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_10.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_11.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_12.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001U/files/structure.pdb", "length": 460844, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001U/files/trajectory.xtc", "length": 108504300, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_00.jpg", "length": 20513, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_01.jpg", "length": 19871, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_02.jpg", "length": 20094, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_03.jpg", "length": 19950, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_04.jpg", "length": 19744, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_05.jpg", "length": 20350, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_06.jpg", "length": 20178, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_07.jpg", "length": 20272, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_08.jpg", "length": 20352, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_09.jpg", "length": 20070, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_10.jpg", "length": 19741, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_11.jpg", "length": 20068, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_12.jpg", "length": 19913, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_13.jpg", "length": 20143, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_14.jpg", "length": 20473, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_15.jpg", "length": 20118, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_16.jpg", "length": 20234, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_17.jpg", "length": 20385, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_18.jpg", "length": 19939, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_19.jpg", "length": 20282, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_20.jpg", "length": 19832, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_21.jpg", "length": 20272, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_00.jpg", "length": 18777, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_01.jpg", "length": 19109, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_02.jpg", "length": 19153, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_03.jpg", "length": 19064, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_04.jpg", "length": 18776, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_05.jpg", "length": 18901, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_06.jpg", "length": 18905, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_07.jpg", "length": 18867, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_08.jpg", "length": 18941, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_09.jpg", "length": 18976, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_10.jpg", "length": 18491, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_11.jpg", "length": 19072, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_12.jpg", "length": 19213, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_13.jpg", "length": 18790, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_14.jpg", "length": 19119, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_15.jpg", "length": 19300, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_16.jpg", "length": 19430, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_17.jpg", "length": 19045, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_18.jpg", "length": 19031, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_19.jpg", "length": 18792, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_20.jpg", "length": 19120, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001U/files/pocket_01.pdb", "length": 25929, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001U/files/pocket_02.pdb", "length": 15276, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001U/files/pocket_03.pdb", "length": 8777, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}]} +{"project_identifier": "A001U", "accession": "A001U", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1RY7", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1RY7"], "FORCED_REFERENCES": null, "REFERENCES": ["P05230", "P22607"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["EITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQTPNEECLFLERLEENHYNTYISKKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFLPLPVSSD", "APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE"], "NUCLSEQ": [], "DOMAINS": ["Fibroblast growth factor 1", "Heparin-binding", "Nuclear localization signal", "Fibroblast growth factor receptor 3", "Ig-like C2-type 2", "Ig-like C2-type 3", "Disordered"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 5689, "SYSTRES": 364, "PROTATS": 5689, "PROTRES": 364, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.4758, "BOXSIZEY": 12.4758, "BOXSIZEZ": 8.76405, "mdName": "replica 1", "mdAtoms": 5689, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001U/files/topology.tpr", "length": 1986244, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001U/files/screenshot.jpg", "length": 18889, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001U/files/trajectory.bin", "length": 341408268, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 5001, "atoms": 5689}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_01.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_02.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_03.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_04.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_05.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_06.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_07.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_08.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_09.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_10.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_11.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001U/files/pca_trajectory_12.bin", "length": 262080, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0, "frames": 20, "atoms": 1092}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001U/files/structure.pdb", "length": 460844, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001U/files/trajectory.xtc", "length": 108504300, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_00.jpg", "length": 20513, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_01.jpg", "length": 19871, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_02.jpg", "length": 20094, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_03.jpg", "length": 19950, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_04.jpg", "length": 19744, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_05.jpg", "length": 20350, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_06.jpg", "length": 20178, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_07.jpg", "length": 20272, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_08.jpg", "length": 20352, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_09.jpg", "length": 20070, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_10.jpg", "length": 19741, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_11.jpg", "length": 20068, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_12.jpg", "length": 19913, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_13.jpg", "length": 20143, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_14.jpg", "length": 20473, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_15.jpg", "length": 20118, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_16.jpg", "length": 20234, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_17.jpg", "length": 20385, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_18.jpg", "length": 19939, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_19.jpg", "length": 20282, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_20.jpg", "length": 19832, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_00_screenshot_21.jpg", "downloadUrl": "/projects/A001U/files/clusters_00_screenshot_21.jpg", "length": 20272, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_00.jpg", "length": 18777, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_01.jpg", "length": 19109, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_02.jpg", "length": 19153, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_03.jpg", "length": 19064, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_04.jpg", "length": 18776, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_05.jpg", "length": 18901, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_06.jpg", "length": 18905, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_07.jpg", "length": 18867, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_08.jpg", "length": 18941, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_09.jpg", "length": 18976, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_10.jpg", "length": 18491, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_11.jpg", "length": 19072, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_12.jpg", "length": 19213, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_13.jpg", "length": 18790, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_14.jpg", "length": 19119, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_15.jpg", "length": 19300, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_16.jpg", "length": 19430, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_17.jpg", "length": 19045, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_18.jpg", "length": 19031, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_19.jpg", "length": 18792, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A001U/files/clusters_01_screenshot_20.jpg", "length": 19120, "contentType": "application/octet-stream", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001U/files/pocket_01.pdb", "length": 25929, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001U/files/pocket_02.pdb", "length": 15276, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001U/files/pocket_03.pdb", "length": 8777, "contentType": "chemical/x-pdb", "metadata": {"project": "683f68a0fc41b010274857a3", "md": 0}}]} diff --git a/data/files/A001V/project.json b/data/files/A001V/project.json new file mode 100644 index 0000000000000000000000000000000000000000..3ab1965bfdfcf2f98a7412251e70c8ef07b7d6e8 --- /dev/null +++ b/data/files/A001V/project.json @@ -0,0 +1,193 @@ +{ + "accession": "A001V", + "published": true, + "metadata": { + "NAME": "Dynarepo 1S1Q", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1S1Q" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "Q99816", + "P0CG48" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "VSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS", + "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Tumor susceptibility gene 101 protein", + "UEV", + "Ubiquitin", + "Ubiquitin-like 1", + "Interacts with activating enzyme", + "Essential for function" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 3471, + "SYSTRES": 213, + "PROTATS": 3471, + "PROTRES": 213, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 8.11817, + "BOXSIZEY": 8.11817, + "BOXSIZEZ": 5.75796, + "mdName": "replica 1", + "mdAtoms": 3471, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f69e5c42215fa3dde639e", + "creationDate": "2025-06-03T21:32:21.000Z", + "identifier": "A001V" +} \ No newline at end of file diff --git a/data/files/A001V/records.jsonl b/data/files/A001V/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..20fc66b1ca85adf118df7f97ec0e7ee078bbb445 --- /dev/null +++ b/data/files/A001V/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001V", "accession": "A001V", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1S1Q", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1S1Q"], "FORCED_REFERENCES": null, "REFERENCES": ["Q99816", "P0CG48"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["VSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS", "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR"], "NUCLSEQ": [], "DOMAINS": ["Tumor susceptibility gene 101 protein", "UEV", "Ubiquitin", "Ubiquitin-like 1", "Interacts with activating enzyme", "Essential for function"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3471, "SYSTRES": 213, "PROTATS": 3471, "PROTRES": 213, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.11817, "BOXSIZEY": 8.11817, "BOXSIZEZ": 5.75796, "mdName": "replica 1", "mdAtoms": 3471, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001V/files/topology.tpr", "length": 1228936, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001V/files/screenshot.jpg", "length": 22403, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001V/files/trajectory.bin", "length": 208301652, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 5001, "atoms": 3471}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_01.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_02.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_03.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_04.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_05.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_06.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_07.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_08.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_09.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_10.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_11.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_12.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001V/files/structure.pdb", "length": 281186, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001V/files/trajectory.xtc", "length": 66084124, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_00.jpg", "length": 21024, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_01.jpg", "length": 20907, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_02.jpg", "length": 20294, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_03.jpg", "length": 20457, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_04.jpg", "length": 20490, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_05.jpg", "length": 20880, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_06.jpg", "length": 21098, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_07.jpg", "length": 20912, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_08.jpg", "length": 21043, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_09.jpg", "length": 20702, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_10.jpg", "length": 21108, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_11.jpg", "length": 21055, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_12.jpg", "length": 20639, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_13.jpg", "length": 21539, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_14.jpg", "length": 21044, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_15.jpg", "length": 21209, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_16.jpg", "length": 21015, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_17.jpg", "length": 20832, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_18.jpg", "length": 20416, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_19.jpg", "length": 20396, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_20.jpg", "length": 21497, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_00.jpg", "length": 22280, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_01.jpg", "length": 21250, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_02.jpg", "length": 20970, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_03.jpg", "length": 22198, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_04.jpg", "length": 21829, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_05.jpg", "length": 22140, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_06.jpg", "length": 22114, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_07.jpg", "length": 22410, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_08.jpg", "length": 22375, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_09.jpg", "length": 21494, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_10.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_11.jpg", "length": 21473, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_12.jpg", "length": 21386, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_13.jpg", "length": 20990, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_14.jpg", "length": 21540, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_15.jpg", "length": 20901, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_16.jpg", "length": 22037, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_17.jpg", "length": 21710, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_18.jpg", "length": 20863, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_19.jpg", "length": 21176, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001V/files/pocket_01.pdb", "length": 10653, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001V/files/pocket_02.pdb", "length": 8174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001V/files/pocket_03.pdb", "length": 7370, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001V/files/pocket_04.pdb", "length": 4020, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}]} +{"project_identifier": "A001V", "accession": "A001V", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1S1Q", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1S1Q"], "FORCED_REFERENCES": null, "REFERENCES": ["Q99816", "P0CG48"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["VSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS", "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR"], "NUCLSEQ": [], "DOMAINS": ["Tumor susceptibility gene 101 protein", "UEV", "Ubiquitin", "Ubiquitin-like 1", "Interacts with activating enzyme", "Essential for function"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3471, "SYSTRES": 213, "PROTATS": 3471, "PROTRES": 213, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.11817, "BOXSIZEY": 8.11817, "BOXSIZEZ": 5.75796, "mdName": "replica 1", "mdAtoms": 3471, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001V/files/topology.tpr", "length": 1228936, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001V/files/screenshot.jpg", "length": 22403, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001V/files/trajectory.bin", "length": 208301652, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 5001, "atoms": 3471}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_01.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_02.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_03.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_04.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_05.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_06.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_07.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_08.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_09.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_10.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_11.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_12.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001V/files/structure.pdb", "length": 281186, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001V/files/trajectory.xtc", "length": 66084124, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_00.jpg", "length": 21024, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_01.jpg", "length": 20907, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_02.jpg", "length": 20294, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_03.jpg", "length": 20457, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_04.jpg", "length": 20490, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_05.jpg", "length": 20880, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_06.jpg", "length": 21098, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_07.jpg", "length": 20912, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_08.jpg", "length": 21043, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_09.jpg", "length": 20702, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_10.jpg", "length": 21108, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_11.jpg", "length": 21055, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_12.jpg", "length": 20639, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_13.jpg", "length": 21539, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_14.jpg", "length": 21044, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_15.jpg", "length": 21209, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_16.jpg", "length": 21015, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_17.jpg", "length": 20832, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_18.jpg", "length": 20416, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_19.jpg", "length": 20396, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_20.jpg", "length": 21497, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_00.jpg", "length": 22280, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_01.jpg", "length": 21250, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_02.jpg", "length": 20970, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_03.jpg", "length": 22198, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_04.jpg", "length": 21829, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_05.jpg", "length": 22140, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_06.jpg", "length": 22114, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_07.jpg", "length": 22410, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_08.jpg", "length": 22375, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_09.jpg", "length": 21494, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_10.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_11.jpg", "length": 21473, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_12.jpg", "length": 21386, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_13.jpg", "length": 20990, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_14.jpg", "length": 21540, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_15.jpg", "length": 20901, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_16.jpg", "length": 22037, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_17.jpg", "length": 21710, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_18.jpg", "length": 20863, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_19.jpg", "length": 21176, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001V/files/pocket_01.pdb", "length": 10653, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001V/files/pocket_02.pdb", "length": 8174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001V/files/pocket_03.pdb", "length": 7370, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001V/files/pocket_04.pdb", "length": 4020, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}]} +{"project_identifier": "A001V", "accession": "A001V", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1S1Q", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1S1Q"], "FORCED_REFERENCES": null, "REFERENCES": ["Q99816", "P0CG48"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["VSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS", "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR"], "NUCLSEQ": [], "DOMAINS": ["Tumor susceptibility gene 101 protein", "UEV", "Ubiquitin", "Ubiquitin-like 1", "Interacts with activating enzyme", "Essential for function"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 3471, "SYSTRES": 213, "PROTATS": 3471, "PROTRES": 213, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 8.11817, "BOXSIZEY": 8.11817, "BOXSIZEZ": 5.75796, "mdName": "replica 1", "mdAtoms": 3471, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001V/files/topology.tpr", "length": 1228936, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001V/files/screenshot.jpg", "length": 22403, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001V/files/trajectory.bin", "length": 208301652, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 5001, "atoms": 3471}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_01.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_02.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_03.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_04.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_05.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_06.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_07.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_08.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_09.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_10.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_11.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001V/files/pca_trajectory_12.bin", "length": 153360, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0, "frames": 20, "atoms": 639}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001V/files/structure.pdb", "length": 281186, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001V/files/trajectory.xtc", "length": 66084124, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_00.jpg", "length": 21024, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_01.jpg", "length": 20907, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_02.jpg", "length": 20294, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_03.jpg", "length": 20457, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_04.jpg", "length": 20490, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_05.jpg", "length": 20880, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_06.jpg", "length": 21098, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_07.jpg", "length": 20912, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_08.jpg", "length": 21043, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_09.jpg", "length": 20702, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_10.jpg", "length": 21108, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_11.jpg", "length": 21055, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_12.jpg", "length": 20639, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_13.jpg", "length": 21539, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_14.jpg", "length": 21044, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_15.jpg", "length": 21209, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_16.jpg", "length": 21015, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_17.jpg", "length": 20832, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_18.jpg", "length": 20416, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_19.jpg", "length": 20396, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001V/files/clusters_00_screenshot_20.jpg", "length": 21497, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_00.jpg", "length": 22280, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_01.jpg", "length": 21250, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_02.jpg", "length": 20970, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_03.jpg", "length": 22198, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_04.jpg", "length": 21829, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_05.jpg", "length": 22140, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_06.jpg", "length": 22114, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_07.jpg", "length": 22410, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_08.jpg", "length": 22375, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_09.jpg", "length": 21494, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_10.jpg", "length": 21311, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_11.jpg", "length": 21473, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_12.jpg", "length": 21386, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_13.jpg", "length": 20990, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_14.jpg", "length": 21540, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_15.jpg", "length": 20901, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_16.jpg", "length": 22037, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_17.jpg", "length": 21710, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_18.jpg", "length": 20863, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001V/files/clusters_01_screenshot_19.jpg", "length": 21176, "contentType": "application/octet-stream", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001V/files/pocket_01.pdb", "length": 10653, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001V/files/pocket_02.pdb", "length": 8174, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001V/files/pocket_03.pdb", "length": 7370, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001V/files/pocket_04.pdb", "length": 4020, "contentType": "chemical/x-pdb", "metadata": {"project": "683f69e5c42215fa3dde639e", "md": 0}}]} diff --git a/data/files/A001W/project.json b/data/files/A001W/project.json new file mode 100644 index 0000000000000000000000000000000000000000..7d47af35e005e78d40fde46ef4bc591b528f133d --- /dev/null +++ b/data/files/A001W/project.json @@ -0,0 +1,184 @@ +{ + "accession": "A001W", + "published": true, + "metadata": { + "NAME": "Dynarepo 1SV0", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1SV0" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "Q01842", + "Q7K119" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "LPPSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPGAGDVLHNVLQMLIIESHS", + "PLGSDGLPLDPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRVPVGGKMLYRDFRVRLARAMSR" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Ets DNA-binding protein pokkuri", + "PNT", + "PNT" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 2577, + "SYSTRES": 159, + "PROTATS": 2577, + "PROTRES": 159, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 7.95099, + "BOXSIZEY": 7.95099, + "BOXSIZEZ": 5.62597, + "mdName": "replica 1", + "mdAtoms": 2577, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f6ae1872f04e48b381ba8", + "creationDate": "2025-06-03T21:36:33.000Z", + "identifier": "A001W" +} \ No newline at end of file diff --git a/data/files/A001W/records.jsonl b/data/files/A001W/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..6a1cadd84be7cc942b47fe5d2464453f0689a6cd --- /dev/null +++ b/data/files/A001W/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001W", "accession": "A001W", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1SV0", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1SV0"], "FORCED_REFERENCES": null, "REFERENCES": ["Q01842", "Q7K119"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["LPPSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPGAGDVLHNVLQMLIIESHS", "PLGSDGLPLDPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRVPVGGKMLYRDFRVRLARAMSR"], "NUCLSEQ": [], "DOMAINS": ["Ets DNA-binding protein pokkuri", "PNT", "PNT"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 2577, "SYSTRES": 159, "PROTATS": 2577, "PROTRES": 159, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 7.95099, "BOXSIZEY": 7.95099, "BOXSIZEZ": 5.62597, "mdName": "replica 1", "mdAtoms": 2577, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001W/files/topology.tpr", "length": 988072, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001W/files/screenshot.jpg", "length": 21008, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001W/files/trajectory.bin", "length": 154650924, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 5001, "atoms": 2577}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_01.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_02.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_03.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_04.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_05.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_06.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_07.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_08.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_09.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_10.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_11.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_12.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_13.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001W/files/structure.pdb", "length": 208772, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001W/files/trajectory.xtc", "length": 49264028, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_00.jpg", "length": 19210, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_01.jpg", "length": 19150, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_02.jpg", "length": 19005, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_03.jpg", "length": 19106, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_04.jpg", "length": 18864, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_05.jpg", "length": 19367, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_06.jpg", "length": 18833, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_07.jpg", "length": 19807, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_08.jpg", "length": 19386, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_09.jpg", "length": 19672, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_10.jpg", "length": 19658, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_11.jpg", "length": 19013, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_12.jpg", "length": 19240, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_13.jpg", "length": 18730, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_14.jpg", "length": 18938, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_15.jpg", "length": 19173, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_16.jpg", "length": 19236, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_17.jpg", "length": 19515, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_00.jpg", "length": 18368, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_01.jpg", "length": 18762, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_02.jpg", "length": 18253, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_03.jpg", "length": 17971, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_04.jpg", "length": 17850, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_05.jpg", "length": 18094, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_06.jpg", "length": 17763, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_07.jpg", "length": 18611, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_08.jpg", "length": 17884, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_09.jpg", "length": 18514, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_10.jpg", "length": 17864, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_11.jpg", "length": 18418, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_12.jpg", "length": 17935, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_13.jpg", "length": 18432, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_14.jpg", "length": 18647, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_15.jpg", "length": 18616, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_16.jpg", "length": 17990, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001W/files/pocket_01.pdb", "length": 9916, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001W/files/pocket_02.pdb", "length": 6298, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001W/files/pocket_03.pdb", "length": 5963, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}]} +{"project_identifier": "A001W", "accession": "A001W", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1SV0", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1SV0"], "FORCED_REFERENCES": null, "REFERENCES": ["Q01842", "Q7K119"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["LPPSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPGAGDVLHNVLQMLIIESHS", "PLGSDGLPLDPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRVPVGGKMLYRDFRVRLARAMSR"], "NUCLSEQ": [], "DOMAINS": ["Ets DNA-binding protein pokkuri", "PNT", "PNT"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 2577, "SYSTRES": 159, "PROTATS": 2577, "PROTRES": 159, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 7.95099, "BOXSIZEY": 7.95099, "BOXSIZEZ": 5.62597, "mdName": "replica 1", "mdAtoms": 2577, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001W/files/topology.tpr", "length": 988072, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001W/files/screenshot.jpg", "length": 21008, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001W/files/trajectory.bin", "length": 154650924, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 5001, "atoms": 2577}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_01.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_02.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_03.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_04.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_05.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_06.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_07.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_08.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_09.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_10.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_11.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_12.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_13.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001W/files/structure.pdb", "length": 208772, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001W/files/trajectory.xtc", "length": 49264028, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_00.jpg", "length": 19210, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_01.jpg", "length": 19150, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_02.jpg", "length": 19005, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_03.jpg", "length": 19106, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_04.jpg", "length": 18864, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_05.jpg", "length": 19367, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_06.jpg", "length": 18833, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_07.jpg", "length": 19807, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_08.jpg", "length": 19386, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_09.jpg", "length": 19672, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_10.jpg", "length": 19658, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_11.jpg", "length": 19013, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_12.jpg", "length": 19240, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_13.jpg", "length": 18730, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_14.jpg", "length": 18938, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_15.jpg", "length": 19173, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_16.jpg", "length": 19236, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_17.jpg", "length": 19515, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_00.jpg", "length": 18368, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_01.jpg", "length": 18762, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_02.jpg", "length": 18253, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_03.jpg", "length": 17971, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_04.jpg", "length": 17850, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_05.jpg", "length": 18094, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_06.jpg", "length": 17763, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_07.jpg", "length": 18611, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_08.jpg", "length": 17884, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_09.jpg", "length": 18514, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_10.jpg", "length": 17864, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_11.jpg", "length": 18418, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_12.jpg", "length": 17935, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_13.jpg", "length": 18432, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_14.jpg", "length": 18647, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_15.jpg", "length": 18616, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_16.jpg", "length": 17990, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001W/files/pocket_01.pdb", "length": 9916, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001W/files/pocket_02.pdb", "length": 6298, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001W/files/pocket_03.pdb", "length": 5963, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}]} +{"project_identifier": "A001W", "accession": "A001W", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1SV0", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1SV0"], "FORCED_REFERENCES": null, "REFERENCES": ["Q01842", "Q7K119"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["LPPSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPGAGDVLHNVLQMLIIESHS", "PLGSDGLPLDPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRVPVGGKMLYRDFRVRLARAMSR"], "NUCLSEQ": [], "DOMAINS": ["Ets DNA-binding protein pokkuri", "PNT", "PNT"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 2577, "SYSTRES": 159, "PROTATS": 2577, "PROTRES": 159, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 7.95099, "BOXSIZEY": 7.95099, "BOXSIZEZ": 5.62597, "mdName": "replica 1", "mdAtoms": 2577, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001W/files/topology.tpr", "length": 988072, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001W/files/screenshot.jpg", "length": 21008, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001W/files/trajectory.bin", "length": 154650924, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 5001, "atoms": 2577}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_01.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_02.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_03.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_04.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_05.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_06.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_07.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_08.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_09.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_10.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_11.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_12.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001W/files/pca_trajectory_13.bin", "length": 114480, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0, "frames": 20, "atoms": 477}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001W/files/structure.pdb", "length": 208772, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001W/files/trajectory.xtc", "length": 49264028, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_00.jpg", "length": 19210, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_01.jpg", "length": 19150, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_02.jpg", "length": 19005, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_03.jpg", "length": 19106, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_04.jpg", "length": 18864, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_05.jpg", "length": 19367, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_06.jpg", "length": 18833, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_07.jpg", "length": 19807, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_08.jpg", "length": 19386, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_09.jpg", "length": 19672, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_10.jpg", "length": 19658, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_11.jpg", "length": 19013, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_12.jpg", "length": 19240, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_13.jpg", "length": 18730, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_14.jpg", "length": 18938, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_15.jpg", "length": 19173, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_16.jpg", "length": 19236, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001W/files/clusters_00_screenshot_17.jpg", "length": 19515, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_00.jpg", "length": 18368, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_01.jpg", "length": 18762, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_02.jpg", "length": 18253, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_03.jpg", "length": 17971, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_04.jpg", "length": 17850, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_05.jpg", "length": 18094, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_06.jpg", "length": 17763, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_07.jpg", "length": 18611, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_08.jpg", "length": 17884, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_09.jpg", "length": 18514, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_10.jpg", "length": 17864, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_11.jpg", "length": 18418, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_12.jpg", "length": 17935, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_13.jpg", "length": 18432, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_14.jpg", "length": 18647, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_15.jpg", "length": 18616, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001W/files/clusters_01_screenshot_16.jpg", "length": 17990, "contentType": "application/octet-stream", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001W/files/pocket_01.pdb", "length": 9916, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001W/files/pocket_02.pdb", "length": 6298, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001W/files/pocket_03.pdb", "length": 5963, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6ae1872f04e48b381ba8", "md": 0}}]} diff --git a/data/files/A001X/project.json b/data/files/A001X/project.json new file mode 100644 index 0000000000000000000000000000000000000000..9846ee853104e0ef3bed35440f244a0e644b12d8 --- /dev/null +++ b/data/files/A001X/project.json @@ -0,0 +1,195 @@ +{ + "accession": "A001X", + "published": true, + "metadata": { + "NAME": "Dynarepo 1SYQ", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1SYQ" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P18206", + "Q9Y490" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "PLLQAAKGLAGAVSELLRSAQPASA", + "HMPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAW" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Vinculin", + "N-terminal globular head", + "Talin-interaction", + "3 X 112 AA tandem repeats", + "Talin-1", + "Helical bundle R1" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 4466, + "SYSTRES": 284, + "PROTATS": 4466, + "PROTRES": 284, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 12.5935, + "BOXSIZEY": 12.5935, + "BOXSIZEZ": 8.89058, + "mdName": "replica 1", + "mdAtoms": 4466, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f6be396ae352bdf893b46", + "creationDate": "2025-06-03T21:40:51.000Z", + "identifier": "A001X" +} \ No newline at end of file diff --git a/data/files/A001X/records.jsonl b/data/files/A001X/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..e5f9a0dd190db68854007f74600a87306215adda --- /dev/null +++ b/data/files/A001X/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001X", "accession": "A001X", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1SYQ", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1SYQ"], "FORCED_REFERENCES": null, "REFERENCES": ["P18206", "Q9Y490"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["PLLQAAKGLAGAVSELLRSAQPASA", "HMPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAW"], "NUCLSEQ": [], "DOMAINS": ["Vinculin", "N-terminal globular head", "Talin-interaction", "3 X 112 AA tandem repeats", "Talin-1", "Helical bundle R1"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4466, "SYSTRES": 284, "PROTATS": 4466, "PROTRES": 284, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.5935, "BOXSIZEY": 12.5935, "BOXSIZEZ": 8.89058, "mdName": "replica 1", "mdAtoms": 4466, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001X/files/topology.tpr", "length": 1676740, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001X/files/screenshot.jpg", "length": 16708, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001X/files/trajectory.bin", "length": 268013592, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 5001, "atoms": 4466}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_01.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_02.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_03.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_04.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_05.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_06.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_07.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_08.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_09.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_10.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_11.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_12.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_13.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001X/files/structure.pdb", "length": 361781, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001X/files/trajectory.xtc", "length": 85664860, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_00.jpg", "length": 17011, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_01.jpg", "length": 16742, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_02.jpg", "length": 16647, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_03.jpg", "length": 16756, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_04.jpg", "length": 16332, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_05.jpg", "length": 16457, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_06.jpg", "length": 15969, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_07.jpg", "length": 16296, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_08.jpg", "length": 16668, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_09.jpg", "length": 16546, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_10.jpg", "length": 16424, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_11.jpg", "length": 16779, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_12.jpg", "length": 16513, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_13.jpg", "length": 16439, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_14.jpg", "length": 16927, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_15.jpg", "length": 16533, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_16.jpg", "length": 16752, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_17.jpg", "length": 16836, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_18.jpg", "length": 16227, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_19.jpg", "length": 17091, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_20.jpg", "length": 16474, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_00.jpg", "length": 16727, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_01.jpg", "length": 16884, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_02.jpg", "length": 16746, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_03.jpg", "length": 16337, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_04.jpg", "length": 16733, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_05.jpg", "length": 15996, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_06.jpg", "length": 16265, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_07.jpg", "length": 15895, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_08.jpg", "length": 16241, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_09.jpg", "length": 16312, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_10.jpg", "length": 15889, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_11.jpg", "length": 15969, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_12.jpg", "length": 16113, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_13.jpg", "length": 16044, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_14.jpg", "length": 15756, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_15.jpg", "length": 16179, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_16.jpg", "length": 16667, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_17.jpg", "length": 16495, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_18.jpg", "length": 16053, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_19.jpg", "length": 16630, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001X/files/pocket_01.pdb", "length": 7571, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001X/files/pocket_02.pdb", "length": 6499, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001X/files/pocket_03.pdb", "length": 5963, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001X/files/pocket_04.pdb", "length": 4489, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001X/files/pocket_05.pdb", "length": 3819, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}]} +{"project_identifier": "A001X", "accession": "A001X", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1SYQ", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1SYQ"], "FORCED_REFERENCES": null, "REFERENCES": ["P18206", "Q9Y490"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["PLLQAAKGLAGAVSELLRSAQPASA", "HMPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAW"], "NUCLSEQ": [], "DOMAINS": ["Vinculin", "N-terminal globular head", "Talin-interaction", "3 X 112 AA tandem repeats", "Talin-1", "Helical bundle R1"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4466, "SYSTRES": 284, "PROTATS": 4466, "PROTRES": 284, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.5935, "BOXSIZEY": 12.5935, "BOXSIZEZ": 8.89058, "mdName": "replica 1", "mdAtoms": 4466, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001X/files/topology.tpr", "length": 1676740, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001X/files/screenshot.jpg", "length": 16708, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001X/files/trajectory.bin", "length": 268013592, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 5001, "atoms": 4466}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_01.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_02.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_03.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_04.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_05.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_06.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_07.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_08.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_09.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_10.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_11.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_12.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_13.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001X/files/structure.pdb", "length": 361781, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001X/files/trajectory.xtc", "length": 85664860, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_00.jpg", "length": 17011, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_01.jpg", "length": 16742, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_02.jpg", "length": 16647, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_03.jpg", "length": 16756, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_04.jpg", "length": 16332, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_05.jpg", "length": 16457, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_06.jpg", "length": 15969, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_07.jpg", "length": 16296, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_08.jpg", "length": 16668, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_09.jpg", "length": 16546, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_10.jpg", "length": 16424, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_11.jpg", "length": 16779, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_12.jpg", "length": 16513, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_13.jpg", "length": 16439, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_14.jpg", "length": 16927, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_15.jpg", "length": 16533, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_16.jpg", "length": 16752, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_17.jpg", "length": 16836, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_18.jpg", "length": 16227, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_19.jpg", "length": 17091, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_20.jpg", "length": 16474, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_00.jpg", "length": 16727, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_01.jpg", "length": 16884, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_02.jpg", "length": 16746, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_03.jpg", "length": 16337, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_04.jpg", "length": 16733, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_05.jpg", "length": 15996, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_06.jpg", "length": 16265, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_07.jpg", "length": 15895, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_08.jpg", "length": 16241, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_09.jpg", "length": 16312, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_10.jpg", "length": 15889, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_11.jpg", "length": 15969, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_12.jpg", "length": 16113, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_13.jpg", "length": 16044, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_14.jpg", "length": 15756, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_15.jpg", "length": 16179, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_16.jpg", "length": 16667, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_17.jpg", "length": 16495, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_18.jpg", "length": 16053, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_19.jpg", "length": 16630, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001X/files/pocket_01.pdb", "length": 7571, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001X/files/pocket_02.pdb", "length": 6499, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001X/files/pocket_03.pdb", "length": 5963, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001X/files/pocket_04.pdb", "length": 4489, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001X/files/pocket_05.pdb", "length": 3819, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}]} +{"project_identifier": "A001X", "accession": "A001X", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1SYQ", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1SYQ"], "FORCED_REFERENCES": null, "REFERENCES": ["P18206", "Q9Y490"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["PLLQAAKGLAGAVSELLRSAQPASA", "HMPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAW"], "NUCLSEQ": [], "DOMAINS": ["Vinculin", "N-terminal globular head", "Talin-interaction", "3 X 112 AA tandem repeats", "Talin-1", "Helical bundle R1"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4466, "SYSTRES": 284, "PROTATS": 4466, "PROTRES": 284, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 12.5935, "BOXSIZEY": 12.5935, "BOXSIZEZ": 8.89058, "mdName": "replica 1", "mdAtoms": 4466, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001X/files/topology.tpr", "length": 1676740, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001X/files/screenshot.jpg", "length": 16708, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001X/files/trajectory.bin", "length": 268013592, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 5001, "atoms": 4466}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_01.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_02.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_03.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_04.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_05.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_06.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_07.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_08.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_09.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_10.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_11.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_12.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001X/files/pca_trajectory_13.bin", "length": 204480, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0, "frames": 20, "atoms": 852}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001X/files/structure.pdb", "length": 361781, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001X/files/trajectory.xtc", "length": 85664860, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_00.jpg", "length": 17011, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_01.jpg", "length": 16742, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_02.jpg", "length": 16647, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_03.jpg", "length": 16756, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_04.jpg", "length": 16332, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_05.jpg", "length": 16457, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_06.jpg", "length": 15969, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_07.jpg", "length": 16296, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_08.jpg", "length": 16668, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_09.jpg", "length": 16546, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_10.jpg", "length": 16424, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_11.jpg", "length": 16779, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_12.jpg", "length": 16513, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_13.jpg", "length": 16439, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_14.jpg", "length": 16927, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_15.jpg", "length": 16533, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_16.jpg", "length": 16752, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_17.jpg", "length": 16836, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_18.jpg", "length": 16227, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_19.jpg", "length": 17091, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_00_screenshot_20.jpg", "downloadUrl": "/projects/A001X/files/clusters_00_screenshot_20.jpg", "length": 16474, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_00.jpg", "length": 16727, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_01.jpg", "length": 16884, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_02.jpg", "length": 16746, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_03.jpg", "length": 16337, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_04.jpg", "length": 16733, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_05.jpg", "length": 15996, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_06.jpg", "length": 16265, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_07.jpg", "length": 15895, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_08.jpg", "length": 16241, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_09.jpg", "length": 16312, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_10.jpg", "length": 15889, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_11.jpg", "length": 15969, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_12.jpg", "length": 16113, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_13.jpg", "length": 16044, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_14.jpg", "length": 15756, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_15.jpg", "length": 16179, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_16.jpg", "length": 16667, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_17.jpg", "length": 16495, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_18.jpg", "length": 16053, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A001X/files/clusters_01_screenshot_19.jpg", "length": 16630, "contentType": "application/octet-stream", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001X/files/pocket_01.pdb", "length": 7571, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001X/files/pocket_02.pdb", "length": 6499, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001X/files/pocket_03.pdb", "length": 5963, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001X/files/pocket_04.pdb", "length": 4489, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001X/files/pocket_05.pdb", "length": 3819, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6be396ae352bdf893b46", "md": 0}}]} diff --git a/data/files/A001Y/project.json b/data/files/A001Y/project.json new file mode 100644 index 0000000000000000000000000000000000000000..2620fcb9c6d34784c6113f0c7084aeb5f236c608 --- /dev/null +++ b/data/files/A001Y/project.json @@ -0,0 +1,205 @@ +{ + "accession": "A001Y", + "published": true, + "metadata": { + "NAME": "Dynarepo 1T63", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1T63" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "P10275", + "Q15596" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "CQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHT", + "KENALLRYLLDKDD" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Androgen receptor", + "NR LBD", + "Interaction with LPXN", + "Interaction with CCAR1", + "Interaction with KAT7", + "Interaction with coactivator LXXL and FXXFY motifs", + "Interaction with coactivator FXXLF and FXXFY motifs", + "Nuclear receptor coactivator 2", + "CASP8AP2-binding", + "Interaction with BMAL1", + "LXXLL motif 3" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 4353, + "SYSTRES": 264, + "PROTATS": 4353, + "PROTRES": 264, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 9.2576, + "BOXSIZEY": 9.2576, + "BOXSIZEZ": 6.55557, + "mdName": "replica 1", + "mdAtoms": 4353, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "pca_trajectory_13.bin", + "pca_trajectory_14.bin", + "pca_trajectory_15.bin", + "pca_trajectory_16.bin", + "pca_trajectory_17.bin", + "pca_trajectory_18.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f6d15b204f2a7930d4272", + "creationDate": "2025-06-03T21:45:57.000Z", + "identifier": "A001Y" +} \ No newline at end of file diff --git a/data/files/A001Y/records.jsonl b/data/files/A001Y/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..a2b293d42094b01b893f817939c54309601d9659 --- /dev/null +++ b/data/files/A001Y/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A001Y", "accession": "A001Y", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1T63", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1T63"], "FORCED_REFERENCES": null, "REFERENCES": ["P10275", "Q15596"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["CQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHT", "KENALLRYLLDKDD"], "NUCLSEQ": [], "DOMAINS": ["Androgen receptor", "NR LBD", "Interaction with LPXN", "Interaction with CCAR1", "Interaction with KAT7", "Interaction with coactivator LXXL and FXXFY motifs", "Interaction with coactivator FXXLF and FXXFY motifs", "Nuclear receptor coactivator 2", "CASP8AP2-binding", "Interaction with BMAL1", "LXXLL motif 3"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4353, "SYSTRES": 264, "PROTATS": 4353, "PROTRES": 264, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.2576, "BOXSIZEY": 9.2576, "BOXSIZEZ": 6.55557, "mdName": "replica 1", "mdAtoms": 4353, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001Y/files/topology.tpr", "length": 1475784, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001Y/files/screenshot.jpg", "length": 21255, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001Y/files/trajectory.bin", "length": 261232236, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 5001, "atoms": 4353}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_01.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_02.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_03.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_04.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_05.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_06.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_07.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_08.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_09.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_10.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_11.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_12.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_13.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_14.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_15.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_16.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_17.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_18.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_18.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001Y/files/structure.pdb", "length": 352628, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001Y/files/trajectory.xtc", "length": 83158992, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_00.jpg", "length": 20832, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_01.jpg", "length": 21088, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_02.jpg", "length": 20719, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_03.jpg", "length": 20768, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_04.jpg", "length": 21113, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_05.jpg", "length": 21329, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_06.jpg", "length": 20904, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_07.jpg", "length": 21163, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_08.jpg", "length": 20976, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_09.jpg", "length": 20638, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_10.jpg", "length": 20997, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_11.jpg", "length": 21069, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_12.jpg", "length": 21521, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_13.jpg", "length": 21299, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_14.jpg", "length": 21345, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_15.jpg", "length": 20450, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_16.jpg", "length": 20976, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_17.jpg", "length": 20812, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_18.jpg", "length": 21784, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_19.jpg", "length": 20512, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_00.jpg", "length": 20651, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_01.jpg", "length": 20359, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_02.jpg", "length": 20573, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_03.jpg", "length": 20367, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_04.jpg", "length": 20267, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_05.jpg", "length": 20657, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_06.jpg", "length": 20816, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_07.jpg", "length": 20209, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_08.jpg", "length": 20527, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_09.jpg", "length": 20296, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_10.jpg", "length": 20566, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_11.jpg", "length": 20544, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_12.jpg", "length": 20286, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_13.jpg", "length": 20832, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_14.jpg", "length": 20250, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_15.jpg", "length": 20323, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_16.jpg", "length": 20538, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_17.jpg", "length": 20695, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001Y/files/pocket_01.pdb", "length": 14941, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001Y/files/pocket_02.pdb", "length": 8241, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001Y/files/pocket_03.pdb", "length": 7504, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001Y/files/pocket_04.pdb", "length": 7437, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001Y/files/pocket_05.pdb", "length": 7169, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001Y/files/pocket_06.pdb", "length": 6432, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001Y/files/pocket_07.pdb", "length": 4891, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001Y/files/pocket_08.pdb", "length": 4556, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}]} +{"project_identifier": "A001Y", "accession": "A001Y", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1T63", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1T63"], "FORCED_REFERENCES": null, "REFERENCES": ["P10275", "Q15596"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["CQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHT", "KENALLRYLLDKDD"], "NUCLSEQ": [], "DOMAINS": ["Androgen receptor", "NR LBD", "Interaction with LPXN", "Interaction with CCAR1", "Interaction with KAT7", "Interaction with coactivator LXXL and FXXFY motifs", "Interaction with coactivator FXXLF and FXXFY motifs", "Nuclear receptor coactivator 2", "CASP8AP2-binding", "Interaction with BMAL1", "LXXLL motif 3"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4353, "SYSTRES": 264, "PROTATS": 4353, "PROTRES": 264, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.2576, "BOXSIZEY": 9.2576, "BOXSIZEZ": 6.55557, "mdName": "replica 1", "mdAtoms": 4353, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001Y/files/topology.tpr", "length": 1475784, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001Y/files/screenshot.jpg", "length": 21255, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001Y/files/trajectory.bin", "length": 261232236, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 5001, "atoms": 4353}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_01.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_02.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_03.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_04.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_05.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_06.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_07.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_08.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_09.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_10.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_11.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_12.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_13.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_14.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_15.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_16.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_17.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_18.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_18.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001Y/files/structure.pdb", "length": 352628, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001Y/files/trajectory.xtc", "length": 83158992, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_00.jpg", "length": 20832, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_01.jpg", "length": 21088, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_02.jpg", "length": 20719, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_03.jpg", "length": 20768, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_04.jpg", "length": 21113, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_05.jpg", "length": 21329, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_06.jpg", "length": 20904, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_07.jpg", "length": 21163, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_08.jpg", "length": 20976, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_09.jpg", "length": 20638, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_10.jpg", "length": 20997, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_11.jpg", "length": 21069, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_12.jpg", "length": 21521, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_13.jpg", "length": 21299, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_14.jpg", "length": 21345, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_15.jpg", "length": 20450, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_16.jpg", "length": 20976, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_17.jpg", "length": 20812, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_18.jpg", "length": 21784, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_19.jpg", "length": 20512, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_00.jpg", "length": 20651, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_01.jpg", "length": 20359, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_02.jpg", "length": 20573, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_03.jpg", "length": 20367, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_04.jpg", "length": 20267, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_05.jpg", "length": 20657, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_06.jpg", "length": 20816, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_07.jpg", "length": 20209, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_08.jpg", "length": 20527, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_09.jpg", "length": 20296, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_10.jpg", "length": 20566, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_11.jpg", "length": 20544, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_12.jpg", "length": 20286, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_13.jpg", "length": 20832, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_14.jpg", "length": 20250, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_15.jpg", "length": 20323, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_16.jpg", "length": 20538, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_17.jpg", "length": 20695, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001Y/files/pocket_01.pdb", "length": 14941, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001Y/files/pocket_02.pdb", "length": 8241, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001Y/files/pocket_03.pdb", "length": 7504, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001Y/files/pocket_04.pdb", "length": 7437, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001Y/files/pocket_05.pdb", "length": 7169, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001Y/files/pocket_06.pdb", "length": 6432, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001Y/files/pocket_07.pdb", "length": 4891, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001Y/files/pocket_08.pdb", "length": 4556, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}]} +{"project_identifier": "A001Y", "accession": "A001Y", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1T63", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1T63"], "FORCED_REFERENCES": null, "REFERENCES": ["P10275", "Q15596"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["CQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHT", "KENALLRYLLDKDD"], "NUCLSEQ": [], "DOMAINS": ["Androgen receptor", "NR LBD", "Interaction with LPXN", "Interaction with CCAR1", "Interaction with KAT7", "Interaction with coactivator LXXL and FXXFY motifs", "Interaction with coactivator FXXLF and FXXFY motifs", "Nuclear receptor coactivator 2", "CASP8AP2-binding", "Interaction with BMAL1", "LXXLL motif 3"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 4353, "SYSTRES": 264, "PROTATS": 4353, "PROTRES": 264, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 9.2576, "BOXSIZEY": 9.2576, "BOXSIZEZ": 6.55557, "mdName": "replica 1", "mdAtoms": 4353, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A001Y/files/topology.tpr", "length": 1475784, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A001Y/files/screenshot.jpg", "length": 21255, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A001Y/files/trajectory.bin", "length": 261232236, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 5001, "atoms": 4353}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_01.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_02.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_03.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_04.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_05.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_06.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_07.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_08.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_09.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_09.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_10.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_10.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_11.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_11.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_12.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_12.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_13.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_13.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_14.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_14.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_15.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_15.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_16.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_16.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_17.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_17.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "pca_trajectory_18.bin", "downloadUrl": "/projects/A001Y/files/pca_trajectory_18.bin", "length": 190080, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0, "frames": 20, "atoms": 792}}, {"name": "structure.pdb", "downloadUrl": "/projects/A001Y/files/structure.pdb", "length": 352628, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A001Y/files/trajectory.xtc", "length": 83158992, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_00.jpg", "length": 20832, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_01.jpg", "length": 21088, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_02.jpg", "length": 20719, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_03.jpg", "length": 20768, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_04.jpg", "length": 21113, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_05.jpg", "length": 21329, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_06.jpg", "length": 20904, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_07.jpg", "length": 21163, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_08.jpg", "length": 20976, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_09.jpg", "length": 20638, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_10.jpg", "length": 20997, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_11.jpg", "length": 21069, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_12.jpg", "length": 21521, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_13.jpg", "length": 21299, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_14.jpg", "length": 21345, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_15.jpg", "length": 20450, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_16.jpg", "length": 20976, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_17.jpg", "length": 20812, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_18.jpg", "length": 21784, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A001Y/files/clusters_00_screenshot_19.jpg", "length": 20512, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_00.jpg", "length": 20651, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_01.jpg", "length": 20359, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_02.jpg", "length": 20573, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_03.jpg", "length": 20367, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_04.jpg", "length": 20267, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_05.jpg", "length": 20657, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_06.jpg", "length": 20816, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_07.jpg", "length": 20209, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_08.jpg", "length": 20527, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_09.jpg", "length": 20296, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_10.jpg", "length": 20566, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_11.jpg", "length": 20544, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_12.jpg", "length": 20286, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_13.jpg", "length": 20832, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_14.jpg", "length": 20250, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_15.jpg", "length": 20323, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_16.jpg", "length": 20538, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A001Y/files/clusters_01_screenshot_17.jpg", "length": 20695, "contentType": "application/octet-stream", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A001Y/files/pocket_01.pdb", "length": 14941, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A001Y/files/pocket_02.pdb", "length": 8241, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A001Y/files/pocket_03.pdb", "length": 7504, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_04.pdb", "downloadUrl": "/projects/A001Y/files/pocket_04.pdb", "length": 7437, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_05.pdb", "downloadUrl": "/projects/A001Y/files/pocket_05.pdb", "length": 7169, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_06.pdb", "downloadUrl": "/projects/A001Y/files/pocket_06.pdb", "length": 6432, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_07.pdb", "downloadUrl": "/projects/A001Y/files/pocket_07.pdb", "length": 4891, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}, {"name": "pocket_08.pdb", "downloadUrl": "/projects/A001Y/files/pocket_08.pdb", "length": 4556, "contentType": "chemical/x-pdb", "metadata": {"project": "683f6d15b204f2a7930d4272", "md": 0}}]} diff --git a/data/files/A001Z/project.json b/data/files/A001Z/project.json new file mode 100644 index 0000000000000000000000000000000000000000..0bcaa284ac6439c23f59dc1e6da1a3bda99a77f2 --- /dev/null +++ b/data/files/A001Z/project.json @@ -0,0 +1,199 @@ +{ + "accession": "A001Z", + "published": true, + "metadata": { + "NAME": "Dynarepo 1TA3", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1TA3" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "Q8L5C6", + "Q00177" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "AGGKTGQVTVFWGRNKAEGSLREACDSGMYTMVTMSFLDVFGANGKYHLDLSGHDLSSVGADIKHCQSKGVPVSLSIGGYGTGYSLPSNRSALDLFDHLWNSYFGGSKPSVPRPFGDAWLDGVDLFLEHGTPADRYDVLALELAKHNIRGGPGKPLHLTATVRCGYPPAAHVGRALATGIFERVHVRTYESDKWCNQNLGWEGSWDKWTAAYPATRFYVGLTADDKSHQWVHPKNVYYGVAPVAQKKDNYGGIMLWDRYFDKQTNYSSLIKYYA", + "ASLNDLFVAAGKSYFGTCSDQALLQNSQNEAIVASQFGVITPENSMKWDALEPSQGNFGWSGADYLVDYATQHNKKVRGHTLVWHSQLPSWVSSIGDANTLRSVMTNHINEVVGRYKGKIMHWDVVNEIFNEDGTFRNSVFYNLLGEDFVRIAFETARAADPDAKLYINDYNLDSASYAKTQAMASYVKKWLAEGVPIDGIGSQAHYSSSHWSSTEAAGALSSLANTGVSEVAITELDIAGAASSDYLNLLNACLNEQKCVGITVWGVSDKDSWRASDSPLLFDGNYQPKDAYNAIVNALS" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Xylanase inhibitor protein 1", + "GH18", + "Interaction with fungal GH11 xylanase", + "Interaction with fungal GH10 xylanase", + "Endo-1,4-beta-xylanase C", + "GH10" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 8695, + "SYSTRES": 575, + "PROTATS": 8695, + "PROTRES": 575, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 10.976, + "BOXSIZEY": 10.976, + "BOXSIZEZ": 7.7895, + "mdName": "replica 1", + "mdAtoms": 8695, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "pca_trajectory_09.bin", + "pca_trajectory_10.bin", + "pca_trajectory_11.bin", + "pca_trajectory_12.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_00_screenshot_20.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "pocket_01.pdb", + "pocket_02.pdb", + "pocket_03.pdb", + "pocket_04.pdb", + "pocket_05.pdb", + "pocket_06.pdb", + "pocket_07.pdb", + "pocket_08.pdb", + "pocket_09.pdb", + "pocket_10.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 1, + "internalId": "683f6eb54cb64c83f073c54d", + "creationDate": "2025-06-03T21:52:53.000Z", + "identifier": "A001Z" +} \ No newline at end of file diff --git a/data/files/A0020/records.jsonl b/data/files/A0020/records.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..6e7ca49d0936d01f3d8b338a311e294f04daec03 --- /dev/null +++ b/data/files/A0020/records.jsonl @@ -0,0 +1,3 @@ +{"project_identifier": "A0020", "accession": "A0020", "published": true, "md_index": 0, "md_name": "replica 1", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1TDQ", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1TDQ"], "FORCED_REFERENCES": null, "REFERENCES": ["Q05546", "P07897"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["IPVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWTKASGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAF", "EQCEEGWTKFQGHCYRHFPDRETWVDAERRCREQQSHLSSIVTPEEQEFVNKNAQDYQWIGLNDRTIEGDFRWSDGHSLQFEKWRPNQPDNFFATGEDCVVMIWHERGEWNDVPCNYQLPFTCKKG"], "NUCLSEQ": [], "DOMAINS": ["Tenascin-R", "Fibronectin type-III 2", "Fibronectin type-III 3", "Fibronectin type-III 4", "Fibronectin type-III 5", "Aggrecan core protein", "C-type lectin", "Disordered", "G3"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 6150, "SYSTRES": 397, "PROTATS": 6150, "PROTRES": 397, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 14.1353, "BOXSIZEY": 14.1353, "BOXSIZEZ": 9.97361, "mdName": "replica 1", "mdAtoms": 6150, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0020/files/topology.tpr", "length": 2229768, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0020/files/screenshot.jpg", "length": 16808, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0020/files/trajectory.bin", "length": 369073800, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 5001, "atoms": 6150}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_01.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_02.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_03.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_04.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_05.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_06.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_07.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_08.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0020/files/structure.pdb", "length": 498185, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0020/files/trajectory.xtc", "length": 117081348, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_00.jpg", "length": 17788, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_01.jpg", "length": 17631, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_02.jpg", "length": 17456, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_03.jpg", "length": 17302, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_04.jpg", "length": 17791, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_05.jpg", "length": 17927, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_06.jpg", "length": 17530, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_07.jpg", "length": 17924, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_08.jpg", "length": 17275, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_09.jpg", "length": 17791, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_10.jpg", "length": 17114, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_11.jpg", "length": 17634, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_12.jpg", "length": 17925, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_13.jpg", "length": 16858, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_14.jpg", "length": 17579, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_15.jpg", "length": 17396, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_16.jpg", "length": 16966, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_17.jpg", "length": 17690, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_18.jpg", "length": 17745, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_19.jpg", "length": 18141, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_00.jpg", "length": 17766, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_01.jpg", "length": 18144, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_02.jpg", "length": 17549, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_03.jpg", "length": 17009, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_04.jpg", "length": 17088, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_05.jpg", "length": 17113, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_06.jpg", "length": 17257, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_07.jpg", "length": 17349, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_08.jpg", "length": 17118, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_09.jpg", "length": 17217, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_10.jpg", "length": 17220, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_11.jpg", "length": 17182, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_12.jpg", "length": 17403, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_13.jpg", "length": 17721, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_14.jpg", "length": 17450, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_15.jpg", "length": 17522, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_16.jpg", "length": 17705, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_17.jpg", "length": 17385, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_18.jpg", "length": 17477, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_19.jpg", "length": 17471, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_20.jpg", "length": 17899, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0020/files/pocket_01.pdb", "length": 5427, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0020/files/pocket_02.pdb", "length": 3618, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0020/files/pocket_03.pdb", "length": 2412, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}]} +{"project_identifier": "A0020", "accession": "A0020", "published": true, "md_index": 1, "md_name": "replica 2", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1TDQ", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1TDQ"], "FORCED_REFERENCES": null, "REFERENCES": ["Q05546", "P07897"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["IPVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWTKASGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAF", "EQCEEGWTKFQGHCYRHFPDRETWVDAERRCREQQSHLSSIVTPEEQEFVNKNAQDYQWIGLNDRTIEGDFRWSDGHSLQFEKWRPNQPDNFFATGEDCVVMIWHERGEWNDVPCNYQLPFTCKKG"], "NUCLSEQ": [], "DOMAINS": ["Tenascin-R", "Fibronectin type-III 2", "Fibronectin type-III 3", "Fibronectin type-III 4", "Fibronectin type-III 5", "Aggrecan core protein", "C-type lectin", "Disordered", "G3"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 6150, "SYSTRES": 397, "PROTATS": 6150, "PROTRES": 397, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 14.1353, "BOXSIZEY": 14.1353, "BOXSIZEZ": 9.97361, "mdName": "replica 1", "mdAtoms": 6150, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0020/files/topology.tpr", "length": 2229768, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0020/files/screenshot.jpg", "length": 16808, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0020/files/trajectory.bin", "length": 369073800, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 5001, "atoms": 6150}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_01.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_02.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_03.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_04.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_05.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_06.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_07.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_08.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0020/files/structure.pdb", "length": 498185, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0020/files/trajectory.xtc", "length": 117081348, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_00.jpg", "length": 17788, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_01.jpg", "length": 17631, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_02.jpg", "length": 17456, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_03.jpg", "length": 17302, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_04.jpg", "length": 17791, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_05.jpg", "length": 17927, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_06.jpg", "length": 17530, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_07.jpg", "length": 17924, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_08.jpg", "length": 17275, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_09.jpg", "length": 17791, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_10.jpg", "length": 17114, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_11.jpg", "length": 17634, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_12.jpg", "length": 17925, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_13.jpg", "length": 16858, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_14.jpg", "length": 17579, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_15.jpg", "length": 17396, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_16.jpg", "length": 16966, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_17.jpg", "length": 17690, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_18.jpg", "length": 17745, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_19.jpg", "length": 18141, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_00.jpg", "length": 17766, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_01.jpg", "length": 18144, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_02.jpg", "length": 17549, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_03.jpg", "length": 17009, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_04.jpg", "length": 17088, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_05.jpg", "length": 17113, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_06.jpg", "length": 17257, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_07.jpg", "length": 17349, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_08.jpg", "length": 17118, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_09.jpg", "length": 17217, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_10.jpg", "length": 17220, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_11.jpg", "length": 17182, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_12.jpg", "length": 17403, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_13.jpg", "length": 17721, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_14.jpg", "length": 17450, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_15.jpg", "length": 17522, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_16.jpg", "length": 17705, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_17.jpg", "length": 17385, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_18.jpg", "length": 17477, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_19.jpg", "length": 17471, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_20.jpg", "length": 17899, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0020/files/pocket_01.pdb", "length": 5427, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0020/files/pocket_02.pdb", "length": 3618, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0020/files/pocket_03.pdb", "length": 2412, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}]} +{"project_identifier": "A0020", "accession": "A0020", "published": true, "md_index": 2, "md_name": "replica 3", "analyses": ["clusters", "clusters-00", "clusters-01", "dist-perres", "energies", "fluctuation", "hbonds", "interactions", "pca", "pockets", "rgyr", "rmsd-pairwise", "rmsd-perres", "rmsds", "sasa", "tmscores"], "chains": [], "metadata": {"NAME": "Dynarepo 1TDQ", "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", "AUTHORS": ["Omid Mokhtari", "Hamed Khakzad", "Yasaman Karami"], "GROUPS": ["Delta team, Inria center at the University of Lorraine"], "CONTACT": "yasaman.karami@inria.fr", "PROGRAM": "GROMACS", "VERSION": "2024.2", "TYPE": "trajectory", "METHOD": "Classical MD", "LICENSE": "Apache License 2.0", "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", "CITATION": "DynaRepo citation", "THANKS": "DynaRepo Acknowledgements", "LINKS": null, "PDBIDS": ["1TDQ"], "FORCED_REFERENCES": null, "REFERENCES": ["Q05546", "P07897"], "INPUT_LIGANDS": null, "LIGANDS": [], "LIGANDNAMES": null, "PROTSEQ": ["IPVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWTKASGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAF", "EQCEEGWTKFQGHCYRHFPDRETWVDAERRCREQQSHLSSIVTPEEQEFVNKNAQDYQWIGLNDRTIEGDFRWSDGHSLQFEKWRPNQPDNFFATGEDCVVMIWHERGEWNDVPCNYQLPFTCKKG"], "NUCLSEQ": [], "DOMAINS": ["Tenascin-R", "Fibronectin type-III 2", "Fibronectin type-III 3", "Fibronectin type-III 4", "Fibronectin type-III 5", "Aggrecan core protein", "C-type lectin", "Disordered", "G3"], "FRAMESTEP": 0.1, "TIMESTEP": 2, "TEMP": 310, "ENSEMBLE": "NPT", "FF": ["CHARMM36m"], "WAT": "TIP3P", "BOXTYPE": "Dodecahedron", "SYSTATS": 6150, "SYSTRES": 397, "PROTATS": 6150, "PROTRES": 397, "NUCLATS": 0, "NUCLRES": 0, "LIPIATS": 0, "LIPIRES": 0, "CARBATS": 0, "CARBRES": 0, "SOLVATS": 0, "SOLVRES": 0, "COUNCAT": 0, "COUNANI": 0, "COUNION": 0, "INTERACTIONS": [{"name": "chain A-chain B interaction", "agent_1": "chain A", "agent_2": "chain B", "selection_1": "chain A", "selection_2": "chain B", "type": "protein-protein"}], "PBC_SELECTION": null, "CHAINNAMES": null, "MEMBRANES": null, "CUSTOMS": null, "ORIENTATION": null, "PTM": [], "MULTIMERIC": null, "COLLECTIONS": "dynarepo", "WARNINGS": [], "BOXSIZEX": 14.1353, "BOXSIZEY": 14.1353, "BOXSIZEZ": 9.97361, "mdName": "replica 1", "mdAtoms": 6150, "mdFrames": 5001}, "files": [{"name": "topology.tpr", "downloadUrl": "/projects/A0020/files/topology.tpr", "length": 2229768, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": null}}, {"name": "screenshot.jpg", "downloadUrl": "/projects/A0020/files/screenshot.jpg", "length": 16808, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": null}}, {"name": "trajectory.bin", "downloadUrl": "/projects/A0020/files/trajectory.bin", "length": 369073800, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 5001, "atoms": 6150}}, {"name": "pca_trajectory_01.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_01.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_02.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_02.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_03.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_03.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_04.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_04.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_05.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_05.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_06.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_06.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_07.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_07.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "pca_trajectory_08.bin", "downloadUrl": "/projects/A0020/files/pca_trajectory_08.bin", "length": 285840, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0, "frames": 20, "atoms": 1191}}, {"name": "structure.pdb", "downloadUrl": "/projects/A0020/files/structure.pdb", "length": 498185, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "trajectory.xtc", "downloadUrl": "/projects/A0020/files/trajectory.xtc", "length": 117081348, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_00.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_00.jpg", "length": 17788, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_01.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_01.jpg", "length": 17631, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_02.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_02.jpg", "length": 17456, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_03.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_03.jpg", "length": 17302, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_04.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_04.jpg", "length": 17791, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_05.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_05.jpg", "length": 17927, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_06.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_06.jpg", "length": 17530, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_07.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_07.jpg", "length": 17924, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_08.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_08.jpg", "length": 17275, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_09.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_09.jpg", "length": 17791, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_10.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_10.jpg", "length": 17114, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_11.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_11.jpg", "length": 17634, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_12.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_12.jpg", "length": 17925, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_13.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_13.jpg", "length": 16858, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_14.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_14.jpg", "length": 17579, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_15.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_15.jpg", "length": 17396, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_16.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_16.jpg", "length": 16966, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_17.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_17.jpg", "length": 17690, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_18.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_18.jpg", "length": 17745, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_00_screenshot_19.jpg", "downloadUrl": "/projects/A0020/files/clusters_00_screenshot_19.jpg", "length": 18141, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_00.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_00.jpg", "length": 17766, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_01.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_01.jpg", "length": 18144, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_02.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_02.jpg", "length": 17549, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_03.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_03.jpg", "length": 17009, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_04.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_04.jpg", "length": 17088, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_05.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_05.jpg", "length": 17113, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_06.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_06.jpg", "length": 17257, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_07.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_07.jpg", "length": 17349, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_08.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_08.jpg", "length": 17118, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_09.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_09.jpg", "length": 17217, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_10.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_10.jpg", "length": 17220, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_11.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_11.jpg", "length": 17182, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_12.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_12.jpg", "length": 17403, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_13.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_13.jpg", "length": 17721, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_14.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_14.jpg", "length": 17450, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_15.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_15.jpg", "length": 17522, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_16.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_16.jpg", "length": 17705, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_17.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_17.jpg", "length": 17385, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_18.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_18.jpg", "length": 17477, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_19.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_19.jpg", "length": 17471, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "clusters_01_screenshot_20.jpg", "downloadUrl": "/projects/A0020/files/clusters_01_screenshot_20.jpg", "length": 17899, "contentType": "application/octet-stream", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "pocket_01.pdb", "downloadUrl": "/projects/A0020/files/pocket_01.pdb", "length": 5427, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "pocket_02.pdb", "downloadUrl": "/projects/A0020/files/pocket_02.pdb", "length": 3618, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}, {"name": "pocket_03.pdb", "downloadUrl": "/projects/A0020/files/pocket_03.pdb", "length": 2412, "contentType": "chemical/x-pdb", "metadata": {"project": "683f70861c4421a26ebfbf8d", "md": 0}}]} diff --git a/data/files/A0021/project.json b/data/files/A0021/project.json new file mode 100644 index 0000000000000000000000000000000000000000..506bf732108a934bd75f81ccd922427ea36a1646 --- /dev/null +++ b/data/files/A0021/project.json @@ -0,0 +1,187 @@ +{ + "accession": "A0021", + "published": true, + "metadata": { + "NAME": "Dynarepo 1TE1", + "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns", + "AUTHORS": [ + "Omid Mokhtari", + "Hamed Khakzad", + "Yasaman Karami" + ], + "GROUPS": [ + "Delta team, Inria center at the University of Lorraine" + ], + "CONTACT": "yasaman.karami@inria.fr", + "PROGRAM": "GROMACS", + "VERSION": "2024.2", + "TYPE": "trajectory", + "METHOD": "Classical MD", + "LICENSE": "Apache License 2.0", + "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0", + "CITATION": "DynaRepo citation", + "THANKS": "DynaRepo Acknowledgements", + "LINKS": null, + "PDBIDS": [ + "1TE1" + ], + "FORCED_REFERENCES": null, + "REFERENCES": [ + "Q8L5C6", + "Q9HFH0" + ], + "INPUT_LIGANDS": null, + "LIGANDS": [], + "LIGANDNAMES": null, + "PROTSEQ": [ + "AGGKTGQVTVFWGRNKAEGSLREACDSGMYTMVTMSFLDVFGANGKYHLDLSGHDLSSVGADIKHCQSKGVPVSLSIGGYGTGYSLPSNRSALDLFDHLWNSYFGGSKPSVPRPFGDAWLDGVDLFLEHGTPADRYDVLALELAKHNIRGGPGKPLHLTATVRCGYPPAAHVGRALATGIFERVHVRTYESDKWCNQNLGWEGSWDKWTAAYPATRFYVGLTADDKSHQWVHPKNVYYGVAPVAQKKDNYGGIMLWDRYFDKQTNYSSLIKYYA", + "QSITTSQTGTNNGYYYSFWTNGGGEVTYTNGDNGEYSVTWVDCGDFTSGKGWNPANAQTVTYSGEFNPSGNAYLAVYGWTTDPLVEYYILESYGTYNPSSGLTSLGQVTSDGGTYDIYSTQRVNQPSIEGTSTFNQYWSVRTEKRVGGTVTTANHFAAWKALGLEMGTYNYMIVSTEGYESSGSSTITVS" + ], + "NUCLSEQ": [], + "DOMAINS": [ + "Xylanase inhibitor protein 1", + "GH18", + "Interaction with fungal GH11 xylanase", + "Interaction with fungal GH10 xylanase", + "Endo-1,4-beta-xylanase C", + "GH11", + "Interaction with protein inhibitor XIP-I" + ], + "FRAMESTEP": 0.1, + "TIMESTEP": 2, + "TEMP": 310, + "ENSEMBLE": "NPT", + "FF": [ + "CHARMM36m" + ], + "WAT": "TIP3P", + "BOXTYPE": "Dodecahedron", + "SYSTATS": 6959, + "SYSTRES": 464, + "PROTATS": 6959, + "PROTRES": 464, + "NUCLATS": 0, + "NUCLRES": 0, + "LIPIATS": 0, + "LIPIRES": 0, + "CARBATS": 0, + "CARBRES": 0, + "SOLVATS": 0, + "SOLVRES": 0, + "COUNCAT": 0, + "COUNANI": 0, + "COUNION": 0, + "INTERACTIONS": [ + { + "name": "chain A-chain B interaction", + "agent_1": "chain A", + "agent_2": "chain B", + "selection_1": "chain A", + "selection_2": "chain B", + "type": "protein-protein" + } + ], + "PBC_SELECTION": null, + "CHAINNAMES": null, + "MEMBRANES": null, + "CUSTOMS": null, + "ORIENTATION": null, + "PTM": [], + "MULTIMERIC": null, + "COLLECTIONS": "dynarepo", + "WARNINGS": [], + "BOXSIZEX": 10.0241, + "BOXSIZEY": 10.0241, + "BOXSIZEZ": 7.09512, + "mdName": "replica 1", + "mdAtoms": 6959, + "mdFrames": 5001 + }, + "mds": [ + "replica 1", + "replica 2", + "replica 3" + ], + "mdref": 0, + "files": [ + "topology.tpr", + "screenshot.jpg", + "trajectory.bin", + "pca_trajectory_01.bin", + "pca_trajectory_02.bin", + "pca_trajectory_03.bin", + "pca_trajectory_04.bin", + "pca_trajectory_05.bin", + "pca_trajectory_06.bin", + "pca_trajectory_07.bin", + "pca_trajectory_08.bin", + "structure.pdb", + "trajectory.xtc", + "clusters_00_screenshot_00.jpg", + "clusters_00_screenshot_01.jpg", + "clusters_00_screenshot_02.jpg", + "clusters_00_screenshot_03.jpg", + "clusters_00_screenshot_04.jpg", + "clusters_00_screenshot_05.jpg", + "clusters_00_screenshot_06.jpg", + "clusters_00_screenshot_07.jpg", + "clusters_00_screenshot_08.jpg", + "clusters_00_screenshot_09.jpg", + "clusters_00_screenshot_10.jpg", + "clusters_00_screenshot_11.jpg", + "clusters_00_screenshot_12.jpg", + "clusters_00_screenshot_13.jpg", + "clusters_00_screenshot_14.jpg", + "clusters_00_screenshot_15.jpg", + "clusters_00_screenshot_16.jpg", + "clusters_00_screenshot_17.jpg", + "clusters_00_screenshot_18.jpg", + "clusters_00_screenshot_19.jpg", + "clusters_01_screenshot_00.jpg", + "clusters_01_screenshot_01.jpg", + "clusters_01_screenshot_02.jpg", + "clusters_01_screenshot_03.jpg", + "clusters_01_screenshot_04.jpg", + "clusters_01_screenshot_05.jpg", + "clusters_01_screenshot_06.jpg", + "clusters_01_screenshot_07.jpg", + "clusters_01_screenshot_08.jpg", + "clusters_01_screenshot_09.jpg", + "clusters_01_screenshot_10.jpg", + "clusters_01_screenshot_11.jpg", + "clusters_01_screenshot_12.jpg", + "clusters_01_screenshot_13.jpg", + "clusters_01_screenshot_14.jpg", + "clusters_01_screenshot_15.jpg", + "clusters_01_screenshot_16.jpg", + "clusters_01_screenshot_17.jpg", + "clusters_01_screenshot_18.jpg", + "clusters_01_screenshot_19.jpg", + "clusters_01_screenshot_20.jpg", + "pocket_01.pdb" + ], + "analyses": [ + "clusters", + "clusters-00", + "clusters-01", + "dist-perres", + "energies", + "fluctuation", + "hbonds", + "interactions", + "pca", + "pockets", + "rgyr", + "rmsd-pairwise", + "rmsd-perres", + "rmsds", + "sasa", + "tmscores" + ], + "mdIndex": 0, + "mdNumber": 1, + "refframe": 0, + "internalId": "683f723409fd1861bf285540", + "creationDate": "2025-06-03T22:07:48.000Z", + "identifier": "A0021" +} \ No newline at end of file