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README.md
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Genetic variants are identified with their chromosome, position (hg38 build), reference allele based on UKB coding, alternate allele based on UKB coding, and their respective LLM embeddings.
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### Dataset Schema (OpenAI text-embedding-3-large)
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| Field | Type | Description |
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| `ref_UKB` | string | Reference allele (A, C, G, T) |
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| `alt_UKB` | string | Alternate allele (A, C, G, T) |
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| `embedding` | list[float]| Embedding vector (dimension 3072, float32) |
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Genetic variants are identified with their chromosome, position (hg38 build), reference allele based on UKB coding, alternate allele based on UKB coding, and their respective LLM embeddings.
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Currently we release datasets at two scale:
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1. HapMap3 & MEGA (~1.5 million variants, OpenAI GPT-3.5)
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2. All FAVOR Variants (~9 billion variants, Qwen3-0.6B)
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With more to come shortly.
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### Dataset Schema (OpenAI text-embedding-3-large)
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| Field | Type | Description |
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| `ref_UKB` | string | Reference allele (A, C, G, T) |
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| `alt_UKB` | string | Alternate allele (A, C, G, T) |
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| `embedding` | list[float]| Embedding vector (dimension 3072, float32) |
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### Dataset Schema (Qwen qwen3-embedding-0.6B)
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| Field | Type | Description |
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|-------------|------------|-------------|
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| `chrom` | string | Chromosome (e.g., `"1"`, `"X"`) |
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| `pos` |string | Base-pair position (hg38 coordinate system) |
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| `ref_UKB` | string | Reference allele (A, C, G, T) |
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| `alt_UKB` | string | Alternate allele (A, C, G, T) |
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| `embedding` | list[float]| Embedding vector (dimension 3072, float32) |
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