Datasets:
Update README.md
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README.md
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@@ -5,7 +5,7 @@ This directory includes all the downstream task datasets of the LucaOne paper (h
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---
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configs:
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- config_name: CentralDogma
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data_files:
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- split: train
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path: dataset/CentralDogma/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/CentralDogma/gene_protein/binary_class/label.txt
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- config_name: CentralDogmaCDSProtein
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data_files:
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- split: train
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path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/CentralDogmaCDSProtein/gene_protein/binary_class/label.txt
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- config_name: CentralDogmaV2
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data_files:
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- split: train
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path: dataset/CentralDogmaV2/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/CentralDogmaV2/gene_protein/binary_class/label.txt
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- config_name: CrossSpeciesHomologousGenePairsV1
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data_files:
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- split: train
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path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/label.txt
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- config_name: CrossSpeciesHomologousGenePairsV2
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data_files:
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- split: train
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path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/label.txt
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- config_name: GenusTax
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data_files:
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- split: train
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path: dataset/GenusTax/gene/multi_class/train/train.csv
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- split: label_info
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dataset/GenusTax/gene/multi_class/label.txt
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- config_name: InfA
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data_files:
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- split: train
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path: dataset/InfA/gene_gene/binary_class/train/train.csv
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- split: label_info
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dataset/InfA/gene_gene/binary_class/label.txt
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- config_name: ncRNAFam
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data_files:
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- split: train
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path: dataset/ncRNAFam/gene/multi_class/train/train.csv
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- split: dev
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- split: label_info
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dataset/ncRNAFam/gene/multi_class/label.txt
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- config_name: ncRPI
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data_files:
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- split: train
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path: dataset/ncRPI/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/ncRPI/gene_protein/binary_class/label.txt
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- config_name: PPI
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data_files:
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- split: train
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path: dataset/PPI/protein/binary_class/train/train.csv
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- split: label_info
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dataset/ProtLoc/protein/multi_class/label.txt
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- config_name: ProtLocCDSGene
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data_files:
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- split: train
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path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv
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path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv
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- split: label_info
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dataset/ProtLocCDSGene/gene/multi_class/label.txt
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-
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- config_name: ProtLocCDSProt
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data_files:
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- split: train
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path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv
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- split: label_info
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dataset/ProtLocCDSProt/protein/multi_class/label.txt
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- config_name: ProtStab
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data_files:
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- split: train
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path: dataset/ProtStab/protein/regression/train/train.csv
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- split: label_info
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dataset/ProtStab/protein/regression/label.txt
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- config_name: SpeciesTax
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data_files:
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- split: train
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path: dataset/SpeciesTax/gene/multi_class/train/train.csv
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- split: label_info
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dataset/SpeciesTax/gene/multi_class/label.txt
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- config_name: SupKTax
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data_files:
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- split: train
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path: dataset/SupKTax/gene/multi_class/train/train.csv
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---
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configs:
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- config_name: CentralDogma
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data_files:
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- split: train
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path: dataset/CentralDogma/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/CentralDogma/gene_protein/binary_class/label.txt
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- config_name: CentralDogmaCDSProtein
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data_files:
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- split: train
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path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/CentralDogmaCDSProtein/gene_protein/binary_class/label.txt
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- config_name: CentralDogmaV2
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data_files:
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- split: train
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path: dataset/CentralDogmaV2/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/CentralDogmaV2/gene_protein/binary_class/label.txt
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- config_name: CrossSpeciesHomologousGenePairsV1
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data_files:
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- split: train
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path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/label.txt
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- config_name: CrossSpeciesHomologousGenePairsV2
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data_files:
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- split: train
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path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/label.txt
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- config_name: GenusTax
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data_files:
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- split: train
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path: dataset/GenusTax/gene/multi_class/train/train.csv
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- split: label_info
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dataset/GenusTax/gene/multi_class/label.txt
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- config_name: InfA
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data_files:
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- split: train
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path: dataset/InfA/gene_gene/binary_class/train/train.csv
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- split: label_info
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dataset/InfA/gene_gene/binary_class/label.txt
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- config_name: ncRNAFam
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data_files:
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- split: train
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path: dataset/ncRNAFam/gene/multi_class/train/train.csv
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- split: dev
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- split: label_info
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dataset/ncRNAFam/gene/multi_class/label.txt
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- config_name: ncRPI
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data_files:
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- split: train
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path: dataset/ncRPI/gene_protein/binary_class/train/train.csv
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- split: label_info
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dataset/ncRPI/gene_protein/binary_class/label.txt
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- config_name: PPI
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data_files:
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- split: train
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path: dataset/PPI/protein/binary_class/train/train.csv
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- split: label_info
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dataset/ProtLoc/protein/multi_class/label.txt
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- config_name: ProtLocCDSGene
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data_files:
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- split: train
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path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv
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path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv
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- split: label_info
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dataset/ProtLocCDSGene/gene/multi_class/label.txt
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- config_name: ProtLocCDSProt
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data_files:
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- split: train
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path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv
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- split: label_info
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dataset/ProtLocCDSProt/protein/multi_class/label.txt
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- config_name: ProtStab
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data_files:
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- split: train
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path: dataset/ProtStab/protein/regression/train/train.csv
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- split: label_info
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dataset/ProtStab/protein/regression/label.txt
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- config_name: SpeciesTax
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data_files:
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- split: train
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path: dataset/SpeciesTax/gene/multi_class/train/train.csv
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- split: label_info
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dataset/SpeciesTax/gene/multi_class/label.txt
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- config_name: SupKTax
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data_files:
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- split: train
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path: dataset/SupKTax/gene/multi_class/train/train.csv
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