Update README.md

README.md

@@ -1,7 +1,4 @@
 
-# Datasets  
-This directory includes all the downstream task datasets of the LucaOne paper (https://www.nature.com/articles/s42256-025-01044-4).
-
 ---
 configs:
 
@@ -13,8 +10,6 @@ configs:
     path: dataset/CentralDogma/gene_protein/binary_class/dev/dev.csv           
   - split: test                   
     path: dataset/CentralDogma/gene_protein/binary_class/test/test.csv           
-  - split: label                            
-    path: dataset/CentralDogma/gene_protein/binary_class/label.txt           
 
 - config_name: CentralDogmaCDSProtein                 
   data_files:                      
@@ -23,9 +18,7 @@ configs:
   - split: dev                     
     path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/dev/dev.csv           
   - split: test                     
-    path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/test/test.csv           
-  - split: label                     
-    path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/label.txt                      
+    path: dataset/CentralDogmaCDSProtein/gene_protein/binary_class/test/test.csv                        
 
 - config_name: CentralDogmaV2                 
   data_files:                     
@@ -34,9 +27,7 @@ configs:
   - split: dev                     
     path: dataset/CentralDogmaV2/gene_protein/binary_class/dev/dev.csv           
   - split: test                     
-    path: dataset/CentralDogmaV2/gene_protein/binary_class/test/test.csv
-  - split: label                     
-    path: dataset/CentralDogmaV2/gene_protein/binary_class/label.txt           
+    path: dataset/CentralDogmaV2/gene_protein/binary_class/test/test.csv     
 
 - config_name: CrossSpeciesHomologousGenePairsV1                
   data_files:                     
@@ -45,10 +36,8 @@ configs:
   - split: dev                               
     path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/dev/dev.csv                     
   - split: test                     
-    path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/test/test.csv                     
-  - split: label                                
-    dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/label.txt           
-
+    path: dataset/CrossSpeciesHomologousGenePairsV1/gene_protein/binary_class/test/test.csv
+    
 - config_name: CrossSpeciesHomologousGenePairsV2                   
   data_files:           
   - split: train           
@@ -57,8 +46,6 @@ configs:
     path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/dev/dev.csv           
   - split: test           
     path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/test/test.csv           
-  - split: label                     
-    path: dataset/CrossSpeciesHomologousGenePairsV2/gene_protein/binary_class/label.txt           
 
 - config_name: GenusTax                   
   data_files:           
@@ -67,9 +54,7 @@ configs:
   - split: dev           
     path: dataset/GenusTax/gene/multi_class/dev/dev.csv           
   - split: test           
-    path: dataset/GenusTax/gene/multi_class/test/test.csv           
-  - split: label           
-    path: dataset/GenusTax/gene/multi_class/label.txt           
+    path: dataset/GenusTax/gene/multi_class/test/test.csv                   
 
 - config_name: InfA                  
   data_files:           
@@ -78,9 +63,7 @@ configs:
   - split: dev           
     path: dataset/InfA/gene_gene/binary_class/dev/dev.csv
   - split: test           
-    path: dataset/InfA/gene_gene/binary_class/test/test.csv           
-  - split: label           
-    path: dataset/InfA/gene_gene/binary_class/label.txt           
+    path: dataset/InfA/gene_gene/binary_class/test/test.csv                  
 
 - config_name: ncRNAFam                     
   data_files:            
@@ -100,10 +83,8 @@ configs:
   - split: dev           
     path: dataset/ncRPI/gene_protein/binary_class/dev/dev.csv           
   - split: test           
-    path: dataset/ncRPI/gene_protein/binary_class/test/test.csv           
-  - split: label                     
-    path: dataset/ncRPI/gene_protein/binary_class/label.txt           
-
+    path: dataset/ncRPI/gene_protein/binary_class/test/test.csv
+    
 - config_name: PPI     
   data_files:           
   - split: train           
@@ -111,9 +92,7 @@ configs:
   - split: dev           
     path: dataset/PPI/protein/binary_class/dev/dev.csv           
   - split: test           
-    path: dataset/PPI/protein/binary_class/test/test.csv           
-  - split: label                
-    path: dataset/PPI/protein/binary_class/label.txt           
+    path: dataset/PPI/protein/binary_class/test/test.csv       
 
 - config_name: ProtLoc           
   data_files:           
@@ -122,9 +101,7 @@ configs:
   - split: dev           
     path: dataset/ProtLoc/protein/multi_class/dev/dev.csv           
   - split: test           
-    path: dataset/ProtLoc/protein/multi_class/test/test.csv           
-  - split: label_info           
-    dataset/ProtLoc/protein/multi_class/label.txt           
+    path: dataset/ProtLoc/protein/multi_class/test/test.csv  
 
 - config_name: ProtLocCDSGene                   
   data_files:           
@@ -133,9 +110,7 @@ configs:
   - split: dev           
     path: dataset/ProtLocCDSGene/gene/multi_class/dev/dev.csv           
   - split: test           
-    path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv           
-  - split: label                     
-    path: dataset/ProtLocCDSGene/gene/multi_class/label.txt           
+    path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv               
  
 - config_name: ProtLocCDSProt                      
   data_files:           
@@ -155,9 +130,7 @@ configs:
   - split: dev           
     path: dataset/ProtStab/protein/regression/dev/dev.csv           
   - split: test           
-    path: dataset/ProtStab/protein/regression/test/test.csv           
-  - split: label           
-    path: dataset/ProtStab/protein/regression/label.txt           
+    path: dataset/ProtStab/protein/regression/test/test.csv              
 
 - config_name: SpeciesTax       
   data_files:
@@ -166,9 +139,7 @@ configs:
   - split: dev           
     path: dataset/SpeciesTax/gene/multi_class/dev/dev.csv           
   - split: test           
-    path: dataset/SpeciesTax/gene/multi_class/test/test.csv           
-  - split: label           
-    path: dataset/SpeciesTax/gene/multi_class/label.txt           
+    path: dataset/SpeciesTax/gene/multi_class/test/test.csv                   
 
 - config_name: SupKTax                     
   data_files:           
@@ -177,12 +148,14 @@ configs:
   - split: dev           
     path: dataset/SupKTax/gene/multi_class/dev/dev.csv           
   - split: test           
-    path: dataset/SupKTax/gene/multi_class/test/test.csv           
-  - split: label           
-    path: dataset/SupKTax/gene/multi_class/label.txt                      
+    path: dataset/SupKTax/gene/multi_class/test/test.csv                             
 
 ---
 
+# Datasets  
+This directory includes all the downstream task datasets of the LucaOne paper (https://www.nature.com/articles/s42256-025-01044-4).
+
+
 # LucaOne-Downstream-Task-Datasets
 Usage: