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We also recommend that a + file or class name and description of purpose be included on the + same "printed page" as the copyright notice for easier + identification within third-party archives. + + Copyright [yyyy] [name of copyright owner] + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. diff --git a/README.md b/README.md index 7be5fc7f47d5db027d120b8024982df93db95b74..d81b164e2982a16c9d3836f5da1317f106c8eec7 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,147 @@ ---- -license: mit ---- +# PRISM + +[PRISM](https://arxiv.org/abs/2404.15028): A **P**romptable and **R**obust **I**nteractive **S**egmentation **M**odel with Visual Prompts + +Placenta application: + +[PRISM Lite](https://arxiv.org/abs/2408.05372): A lightweight model for interactive 3D placenta segmentation in ultrasound + +Interactive Segmentation Model for Placenta Segmentation from 3D Ultrasound Images ([arXiv version](https://arxiv.org/abs/2407.08020)) + + +## News +[07/07/24] Check out the decent performance/version of [PRISM on placenta segmentation in ultrasound images](https://github.com/MedICL-VU/PRISM-placenta). + +[05/13/24] Our work is early accepted by MICCAI 2024. + +[03/07/24] The [pretrained PRISM](https://drive.google.com/drive/u/1/folders/1B6Df44Gd9PEBGPkE1FwC8Ds4jefCekUB) models and [preprocessed datasets](https://drive.google.com/drive/folders/13uGNb2WQhSQcBQIUhnvYJere1LBYGDsW?usp=sharing) are uploaded. + +## TODO + + +demo (gradio) + + + +## Introduction of PRISM + + +PRISM is a robust model/method for interactive segmentation in medical imaging. We strive for human-level performance, as a human-in-loop interactive segmentation model with prompts should gradually refine its outcomes until they closely match inter-rater variability. + + + +## PRISM tumor segmentation examples +Briefly, PRISM produces tumor segmentation with mean Dice values of **93.79 (colon), 94.48 (pancreas), 94.18 (liver), and 96.58 (kidney)**. + + | | | +:-------------------------:|:-------------------------: +Iterative correction for colon tumor | ![iterative_colon](figs/iterative_results.png) +Iterative correction for multiple tumors | ![iterative_all](figs/iterative_results_supp.png) +Qualitative results with compared methods | ![qualitative_results](figs/qualitative_results.png) + +The quantitative results can be viewed in our [paper](https://arxiv.org/abs/2404.15028). + +## Datasets +The anatomical differences among individuals and ambiguous boundaries are present in the datasets. + +- Our preprocessed + + We used four public [datasets](https://drive.google.com/drive/folders/13uGNb2WQhSQcBQIUhnvYJere1LBYGDsW?usp=sharing) for 3D tumor segmentation in [colon](https://drive.google.com/drive/u/1/folders/1bt17794HCZfmJ2MLh5w0Y_IAJyUj6ti2), [pancreas](https://drive.google.com/drive/u/1/folders/1NncGDG5Cu795WJTmBse-Lm0GrJmtvTdc), [liver](https://drive.google.com/drive/u/1/folders/1vDM2VkNAT5dvFX5XTRhPe6b7zwYWqU_U) and [kidney](https://drive.google.com/drive/u/1/folders/12UDho-JEZHfK1c1laD5dBFNxvJumcoDF). + +- Original + + Here are the links for the datasets: [MSD-colon](http://medicaldecathlon.com/), [MSD-pancreas](http://medicaldecathlon.com/), [LiTS2017](https://competitions.codalab.org/competitions/17094) and [KiTS2021](https://kits-challenge.org/kits21/). + + + + + +## Models +| colon | pancreas | liver | kidney | +|------------------------------|------------------------------|------------------------------|------------------------------| +| [Download](https://drive.google.com/drive/u/1/folders/1nPUC0cCsyA_w-tKkhL_Bw7lesBorGzCl) |[Download](https://drive.google.com/drive/u/1/folders/1JPiF7wtSnbFdl0ZLmFQt1b4H-XH4FDrM)| [Download](https://drive.google.com/drive/u/1/folders/1JAFOca1FxWebzZjRa1lKo1OAv0HXqeh6) |[Download](https://drive.google.com/drive/u/1/folders/1sN0HQLM-LfWB5Kp119YwMsZIfv3VJj7S)| + + +## Get Started + +**Installation** +``` +conda create -n prism python=3.9 +conda activate prism +sudo install git +pip install torch==1.12.1+cu113 torchvision==0.13.1+cu113 --extra-index-url https://download.pytorch.org/whl/cu113 # install pytorch +pip install git+https://github.com/facebookresearch/segment-anything.git # install segment anything packages +pip install git+https://github.com/deepmind/surface-distance.git # for normalized surface dice (NSD) evaluation +pip install -r requirements.txt +``` + + +**Train** + +``` +python train.py --data colon --data_dir your_data_directory --save_name your_save_name --multiple_outputs --dynamic --use_box --refine +``` + +add "--use_scribble" and "--efficient_scribble" if you want to train with scribbles. + +**Train (Distributed Data Parallel)** + +the only difference between this and above (train) command is the use of "--ddp". +``` +python train.py --data colon --data_dir your_data_directory --save_name your_save_name -multiple_outputs --dynamic --use_box --refine --ddp +``` + + + +**Test** + +put downloaded pretrained model under the implementation directory +``` +python test.py --data colon --data_dir your_data_directory --split test --checkpoint best --save_name prism_pretrain --num_clicks 1 --iter_nums 11 --multiple_outputs --use_box --use_scribble --efficient_scribble --refine --refine_test +``` + + + + +**FAQ** + +if you got the error as AttributeError: module 'cv2' has no attribute 'ximgproc', please check [this](https://stackoverflow.com/questions/57427233/module-cv2-cv2-has-no-attribute-ximgproc) out + +DDP mode has lower Dice and more epoch numbers may solve it + +On my end, combining trainer and trainer_basic speeds up + +training the model without refine module (as we reported in the paper) has better accuracy than with refine but not using it + + +## License + +The model is licensed under the [Apache 2.0 license](LICENSE) + + +## Acknowledgements +Thanks for the code from: [SAM](https://github.com/facebookresearch/segment-anything), [SAM-Med3D](https://github.com/uni-medical/SAM-Med3D), [ProMISe](https://github.com/MedICL-VU/ProMISe), [ScribblePrompt](https://github.com/halleewong/ScribblePrompt), [nnU-Net](https://github.com/MIC-DKFZ/nnUNet) + +If you find this repository useful, please consider citing: +``` +@inproceedings{li2024prism, + title={Prism: A promptable and robust interactive segmentation model with visual prompts}, + author={Li, Hao and Liu, Han and Hu, Dewei and Wang, Jiacheng and Oguz, Ipek}, + booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention}, + pages={389--399}, + year={2024}, + organization={Springer} +} +``` +``` +@inproceedings{li2024interactive, + title={Interactive Segmentation Model for Placenta Segmentation from 3D Ultrasound Images}, + author={Li, Hao and Oguz, Baris and Arenas, Gabriel and Yao, Xing and Wang, Jiacheng and Pouch, Alison and Byram, Brett and Schwartz, Nadav and Oguz, Ipek}, + booktitle={International Workshop on Advances in Simplifying Medical Ultrasound}, + pages={132--142}, + year={2024}, + organization={Springer} +} +``` +Please send an email to hao.li.1@vanderbilt.edu for any questions and always happy to help! :) + diff --git a/figs/framework_v1.png b/figs/framework_v1.png new file mode 100644 index 0000000000000000000000000000000000000000..89de0a1dfcf4e268cac3f5437801f3640e83e141 --- /dev/null +++ b/figs/framework_v1.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:78cdb3985b10b3b5f000b2c3ef8ed495c89a863efb0be79eccd725bde092d812 +size 360334 diff --git 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sha256:5955d596bb5a0952f9b7d28f8210462fd08fbe50a351f39f9902d7460c4aab2e +size 310138845 diff --git a/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205022.log b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205022.log new file mode 100644 index 0000000000000000000000000000000000000000..8d778d92ea510cc1648f4a461d1767d110b59ac8 --- /dev/null +++ b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205022.log @@ -0,0 +1,44 @@ +[20:50:22.663] Namespace(data='lits', save_dir='./implementation/lits/segmamba_lits', data_dir='/teamspace/studios/this_studio/lits', num_workers=2, split='train', use_small_dataset=False, model_type='segmamba', lr=4e-05, lr_scheduler='linear', warm_up=False, device='cuda:0', max_epoch=20, image_size=128, batch_size=2, checkpoint='best', checkpoint_sam='./checkpoint_sam/sam_vit_b_01ec64.pth', num_classes=2, tolerance=5, boundary_kernel_size=5, use_pretrain=False, pretrain_path='', resume=False, resume_best=False, ddp=False, gpu_ids=[0, 1], accumulation_steps=20, iter_nums=11, num_clicks=50, num_clicks_validation=10, use_box=True, dynamic_box=False, use_scribble=False, num_multiple_outputs=3, multiple_outputs=True, refine=True, no_detach=False, refine_test=False, dynamic=True, efficient_scribble=False, use_sam3d_turbo=False, save_predictions=False, save_csv=False, save_test_dir='./', save_name='segmamba_lits') +[20:50:35.673] epoch: 0/20, iter: 0/42: loss:8.5574: rank:-1 +[20:50:38.575] epoch: 0/20, iter: 1/42: loss:8.3818: rank:-1 +[20:50:46.413] epoch: 0/20, iter: 2/42: loss:7.1325: rank:-1 +[20:50:48.770] epoch: 0/20, iter: 3/42: loss:6.2642: rank:-1 +[20:50:57.829] epoch: 0/20, iter: 4/42: loss:6.4799: rank:-1 +[20:51:00.228] epoch: 0/20, iter: 5/42: loss:6.9034: rank:-1 +[20:51:06.002] epoch: 0/20, iter: 6/42: loss:6.7887: rank:-1 +[20:51:08.538] epoch: 0/20, iter: 7/42: loss:6.4513: rank:-1 +[20:51:16.236] epoch: 0/20, iter: 8/42: loss:6.1899: rank:-1 +[20:51:18.960] epoch: 0/20, iter: 9/42: loss:6.0729: rank:-1 +[20:51:27.247] epoch: 0/20, iter: 10/42: loss:5.718: rank:-1 +[20:51:30.102] epoch: 0/20, iter: 11/42: loss:4.9813: rank:-1 +[20:51:39.417] epoch: 0/20, iter: 12/42: loss:5.4939: rank:-1 +[20:51:41.962] epoch: 0/20, iter: 13/42: loss:5.3117: rank:-1 +[20:51:44.396] epoch: 0/20, iter: 14/42: loss:5.449: rank:-1 +[20:51:46.650] epoch: 0/20, iter: 15/42: loss:5.6844: rank:-1 +[20:51:52.956] epoch: 0/20, iter: 16/42: loss:5.3918: rank:-1 +[20:51:55.556] epoch: 0/20, iter: 17/42: loss:4.9375: rank:-1 +[20:52:00.858] epoch: 0/20, iter: 18/42: loss:5.327: rank:-1 +[20:52:03.344] epoch: 0/20, iter: 19/42: loss:4.1737: rank:-1 +[20:52:11.251] epoch: 0/20, iter: 20/42: loss:4.7739: rank:-1 +[20:52:13.459] epoch: 0/20, iter: 21/42: loss:4.5736: rank:-1 +[20:52:22.639] epoch: 0/20, iter: 22/42: loss:4.376: rank:-1 +[20:52:24.957] epoch: 0/20, iter: 23/42: loss:4.7952: rank:-1 +[20:52:32.556] epoch: 0/20, iter: 24/42: loss:4.3449: rank:-1 +[20:52:35.071] epoch: 0/20, iter: 25/42: loss:3.9444: rank:-1 +[20:52:43.794] epoch: 0/20, iter: 26/42: loss:4.4685: rank:-1 +[20:52:46.204] epoch: 0/20, iter: 27/42: loss:4.8515: rank:-1 +[20:52:50.912] epoch: 0/20, iter: 28/42: loss:5.0115: rank:-1 +[20:52:53.284] epoch: 0/20, iter: 29/42: loss:3.5668: rank:-1 +[20:52:57.536] epoch: 0/20, iter: 30/42: loss:4.543: rank:-1 +[20:52:59.859] epoch: 0/20, iter: 31/42: loss:4.5505: rank:-1 +[20:53:06.325] epoch: 0/20, iter: 32/42: loss:4.569: rank:-1 +[20:53:08.813] epoch: 0/20, iter: 33/42: loss:2.9972: rank:-1 +[20:53:16.092] epoch: 0/20, iter: 34/42: loss:4.2197: rank:-1 +[20:53:18.636] epoch: 0/20, iter: 35/42: loss:3.2781: rank:-1 +[20:53:23.086] epoch: 0/20, iter: 36/42: loss:3.7641: rank:-1 +[20:53:25.604] epoch: 0/20, iter: 37/42: loss:3.8031: rank:-1 +[20:53:30.865] epoch: 0/20, iter: 38/42: loss:4.6695: rank:-1 +[20:53:33.241] epoch: 0/20, iter: 39/42: loss:4.6817: rank:-1 +[20:53:36.407] epoch: 0/20, iter: 40/42: loss:2.5221: rank:-1 +[20:53:38.141] epoch: 0/20, iter: 41/42: loss:4.6047: rank:-1 +[20:53:38.141] - Train metrics: 5.1095066 diff --git a/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205243.log b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205243.log new file mode 100644 index 0000000000000000000000000000000000000000..c8bbc38d5c8310fc430ffd2788ef6462f5eb2df1 --- /dev/null +++ b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205243.log @@ -0,0 +1 @@ +[20:52:43.960] Namespace(data='lits', save_dir='./implementation/lits/segmamba_lits', data_dir='/teamspace/studios/this_studio/lits', num_workers=2, split='train', use_small_dataset=False, model_type='segmamba', lr=4e-05, lr_scheduler='linear', warm_up=False, device='cuda:0', max_epoch=20, image_size=128, batch_size=2, checkpoint='best', checkpoint_sam='./checkpoint_sam/sam_vit_b_01ec64.pth', num_classes=2, tolerance=5, boundary_kernel_size=5, use_pretrain=False, pretrain_path='', resume=False, resume_best=False, ddp=False, gpu_ids=[0, 1], accumulation_steps=20, iter_nums=11, num_clicks=50, num_clicks_validation=10, use_box=True, dynamic_box=False, use_scribble=True, num_multiple_outputs=3, multiple_outputs=True, refine=True, no_detach=False, refine_test=False, dynamic=True, efficient_scribble=True, use_sam3d_turbo=False, save_predictions=False, save_csv=False, save_test_dir='./', save_name='segmamba_lits') diff --git a/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205455.log b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205455.log new file mode 100644 index 0000000000000000000000000000000000000000..0d0aa2cf4d6e62b6b286aad7a391cd34ec29a1f8 --- /dev/null +++ b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205455.log @@ -0,0 +1 @@ +[20:54:55.239] Namespace(data='lits', save_dir='./implementation/lits/segmamba_lits', data_dir='/teamspace/studios/this_studio/lits', num_workers=2, split='train', use_small_dataset=False, model_type='segmamba', lr=4e-05, lr_scheduler='linear', warm_up=False, device='cuda:0', max_epoch=20, image_size=128, batch_size=2, checkpoint='best', checkpoint_sam='./checkpoint_sam/sam_vit_b_01ec64.pth', num_classes=2, tolerance=5, boundary_kernel_size=5, use_pretrain=False, pretrain_path='', resume=False, resume_best=False, ddp=False, gpu_ids=[0, 1], accumulation_steps=20, iter_nums=11, num_clicks=50, num_clicks_validation=10, use_box=True, dynamic_box=False, use_scribble=True, num_multiple_outputs=3, multiple_outputs=True, refine=True, no_detach=False, refine_test=False, dynamic=True, efficient_scribble=True, use_sam3d_turbo=False, save_predictions=False, save_csv=False, save_test_dir='./', save_name='segmamba_lits') diff --git a/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205751.log b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205751.log new file mode 100644 index 0000000000000000000000000000000000000000..016b799e19831064288fd4a09b7867bc42dc921a --- /dev/null +++ b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-205751.log @@ -0,0 +1,44 @@ +[20:57:51.028] Namespace(data='lits', save_dir='./implementation/lits/segmamba_lits', data_dir='/teamspace/studios/this_studio/lits', num_workers=2, split='train', use_small_dataset=False, model_type='segmamba', lr=4e-05, lr_scheduler='linear', warm_up=False, device='cuda:0', max_epoch=20, image_size=128, batch_size=2, checkpoint='best', checkpoint_sam='./checkpoint_sam/sam_vit_b_01ec64.pth', num_classes=2, tolerance=5, boundary_kernel_size=5, use_pretrain=False, pretrain_path='', resume=False, resume_best=False, ddp=False, gpu_ids=[0, 1], accumulation_steps=20, iter_nums=11, num_clicks=50, num_clicks_validation=10, use_box=True, dynamic_box=False, use_scribble=True, num_multiple_outputs=3, multiple_outputs=True, refine=True, no_detach=False, refine_test=False, dynamic=True, efficient_scribble=True, use_sam3d_turbo=False, save_predictions=False, save_csv=False, save_test_dir='./', save_name='segmamba_lits') +[20:58:34.483] epoch: 0/20, iter: 0/42: loss:6.7362: rank:-1 +[20:59:03.016] epoch: 0/20, iter: 1/42: loss:6.2911: rank:-1 +[20:59:20.025] epoch: 0/20, iter: 2/42: loss:6.2703: rank:-1 +[20:59:31.861] epoch: 0/20, iter: 3/42: loss:6.9132: rank:-1 +[20:59:43.729] epoch: 0/20, iter: 4/42: loss:6.2347: rank:-1 +[20:59:54.965] epoch: 0/20, iter: 5/42: loss:6.3368: rank:-1 +[21:00:16.486] epoch: 0/20, iter: 6/42: loss:5.1229: rank:-1 +[21:00:36.620] epoch: 0/20, iter: 7/42: loss:4.5165: rank:-1 +[21:00:47.361] epoch: 0/20, iter: 8/42: loss:5.8889: rank:-1 +[21:00:56.361] epoch: 0/20, iter: 9/42: loss:6.1573: rank:-1 +[21:01:19.516] epoch: 0/20, iter: 10/42: loss:4.5671: rank:-1 +[21:01:32.206] epoch: 0/20, iter: 11/42: loss:5.5973: rank:-1 +[21:01:46.110] epoch: 0/20, iter: 12/42: loss:4.5529: rank:-1 +[21:01:57.634] epoch: 0/20, iter: 13/42: loss:4.7768: rank:-1 +[21:02:09.999] epoch: 0/20, iter: 14/42: loss:5.3851: rank:-1 +[21:02:24.057] epoch: 0/20, iter: 15/42: loss:4.5796: rank:-1 +[21:02:35.541] epoch: 0/20, iter: 16/42: loss:4.9914: rank:-1 +[21:02:44.974] epoch: 0/20, iter: 17/42: loss:5.3536: rank:-1 +[21:02:54.089] epoch: 0/20, iter: 18/42: loss:5.2157: rank:-1 +[21:03:11.600] epoch: 0/20, iter: 19/42: loss:4.4662: rank:-1 +[21:03:22.128] epoch: 0/20, iter: 20/42: loss:4.7908: rank:-1 +[21:03:33.573] epoch: 0/20, iter: 21/42: loss:4.1763: rank:-1 +[21:03:52.205] epoch: 0/20, iter: 22/42: loss:4.4056: rank:-1 +[21:04:10.739] epoch: 0/20, iter: 23/42: loss:3.8492: rank:-1 +[21:04:27.835] epoch: 0/20, iter: 24/42: loss:4.091: rank:-1 +[21:04:39.345] epoch: 0/20, iter: 25/42: loss:3.913: rank:-1 +[21:05:02.657] epoch: 0/20, iter: 26/42: loss:4.5026: rank:-1 +[21:05:12.816] epoch: 0/20, iter: 27/42: loss:4.1648: rank:-1 +[21:05:24.934] epoch: 0/20, iter: 28/42: loss:4.3919: rank:-1 +[21:05:33.928] epoch: 0/20, iter: 29/42: loss:4.4407: rank:-1 +[21:05:45.244] epoch: 0/20, iter: 30/42: loss:4.4362: rank:-1 +[21:05:58.859] epoch: 0/20, iter: 31/42: loss:3.9054: rank:-1 +[21:06:08.443] epoch: 0/20, iter: 32/42: loss:4.394: rank:-1 +[21:06:20.210] epoch: 0/20, iter: 33/42: loss:3.8882: rank:-1 +[21:06:30.116] epoch: 0/20, iter: 34/42: loss:4.3971: rank:-1 +[21:06:48.494] epoch: 0/20, iter: 35/42: loss:3.8213: rank:-1 +[21:07:06.562] epoch: 0/20, iter: 36/42: loss:3.538: rank:-1 +[21:07:27.438] epoch: 0/20, iter: 37/42: loss:3.673: rank:-1 +[21:07:42.053] epoch: 0/20, iter: 38/42: loss:3.4293: rank:-1 +[21:08:00.813] epoch: 0/20, iter: 39/42: loss:4.1726: rank:-1 +[21:08:11.390] epoch: 0/20, iter: 40/42: loss:4.2546: rank:-1 +[21:08:20.427] epoch: 0/20, iter: 41/42: loss:3.4214: rank:-1 +[21:08:20.428] - Train metrics: 4.7621613 diff --git a/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-210909.log b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-210909.log new file mode 100644 index 0000000000000000000000000000000000000000..9b955e102ec77cbe7fa1a2100abf4834acd6b846 --- /dev/null +++ b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-210909.log @@ -0,0 +1,44 @@ +[21:09:09.858] Namespace(data='lits', save_dir='./implementation/lits/segmamba_lits', data_dir='/teamspace/studios/this_studio/lits', num_workers=2, split='train', use_small_dataset=False, model_type='segmamba', lr=4e-05, lr_scheduler='linear', warm_up=False, device='cuda:0', max_epoch=20, image_size=128, batch_size=2, checkpoint='best', checkpoint_sam='./checkpoint_sam/sam_vit_b_01ec64.pth', num_classes=2, tolerance=5, boundary_kernel_size=5, use_pretrain=False, pretrain_path='', resume=False, resume_best=False, ddp=False, gpu_ids=[0, 1], accumulation_steps=20, iter_nums=11, num_clicks=50, num_clicks_validation=10, use_box=True, dynamic_box=False, use_scribble=True, num_multiple_outputs=3, multiple_outputs=True, refine=True, no_detach=False, refine_test=False, dynamic=True, efficient_scribble=True, use_sam3d_turbo=False, save_predictions=False, save_csv=False, save_test_dir='./', save_name='segmamba_lits') +[21:09:50.645] epoch: 0/20, iter: 0/42: loss:5.8351: rank:-1 +[21:10:10.653] epoch: 0/20, iter: 1/42: loss:6.1341: rank:-1 +[21:10:33.245] epoch: 0/20, iter: 2/42: loss:6.8898: rank:-1 +[21:10:57.577] epoch: 0/20, iter: 3/42: loss:6.1827: rank:-1 +[21:11:18.892] epoch: 0/20, iter: 4/42: loss:6.1998: rank:-1 +[21:11:44.095] epoch: 0/20, iter: 5/42: loss:4.9246: rank:-1 +[21:11:55.705] epoch: 0/20, iter: 6/42: loss:6.3802: rank:-1 +[21:12:07.959] epoch: 0/20, iter: 7/42: loss:6.0113: rank:-1 +[21:12:26.902] epoch: 0/20, iter: 8/42: loss:4.9691: rank:-1 +[21:12:44.210] epoch: 0/20, iter: 9/42: loss:5.3392: rank:-1 +[21:12:57.610] epoch: 0/20, iter: 10/42: loss:4.8586: rank:-1 +[21:13:09.536] epoch: 0/20, iter: 11/42: loss:5.3768: rank:-1 +[21:13:18.967] epoch: 0/20, iter: 12/42: loss:5.1704: rank:-1 +[21:13:29.575] epoch: 0/20, iter: 13/42: loss:4.6515: rank:-1 +[21:13:44.878] epoch: 0/20, iter: 14/42: loss:5.1376: rank:-1 +[21:13:55.030] epoch: 0/20, iter: 15/42: loss:4.928: rank:-1 +[21:14:04.131] epoch: 0/20, iter: 16/42: loss:4.966: rank:-1 +[21:14:21.901] epoch: 0/20, iter: 17/42: loss:4.8536: rank:-1 +[21:14:39.631] epoch: 0/20, iter: 18/42: loss:3.9355: rank:-1 +[21:14:52.881] epoch: 0/20, iter: 19/42: loss:4.1299: rank:-1 +[21:15:02.687] epoch: 0/20, iter: 20/42: loss:4.8235: rank:-1 +[21:15:15.051] epoch: 0/20, iter: 21/42: loss:4.5646: rank:-1 +[21:15:25.591] epoch: 0/20, iter: 22/42: loss:4.5925: rank:-1 +[21:15:44.577] epoch: 0/20, iter: 23/42: loss:3.6751: rank:-1 +[21:15:57.779] epoch: 0/20, iter: 24/42: loss:3.8956: rank:-1 +[21:16:19.007] epoch: 0/20, iter: 25/42: loss:3.6836: rank:-1 +[21:16:35.698] epoch: 0/20, iter: 26/42: loss:4.0975: rank:-1 +[21:16:50.358] epoch: 0/20, iter: 27/42: loss:4.3446: rank:-1 +[21:17:07.844] epoch: 0/20, iter: 28/42: loss:4.1784: rank:-1 +[21:17:18.526] epoch: 0/20, iter: 29/42: loss:4.3717: rank:-1 +[21:17:33.551] epoch: 0/20, iter: 30/42: loss:4.1323: rank:-1 +[21:17:50.768] epoch: 0/20, iter: 31/42: loss:3.241: rank:-1 +[21:18:03.168] epoch: 0/20, iter: 32/42: loss:4.0124: rank:-1 +[21:18:18.346] epoch: 0/20, iter: 33/42: loss:4.3774: rank:-1 +[21:18:36.772] epoch: 0/20, iter: 34/42: loss:4.8205: rank:-1 +[21:18:47.896] epoch: 0/20, iter: 35/42: loss:4.588: rank:-1 +[21:18:57.899] epoch: 0/20, iter: 36/42: loss:4.0828: rank:-1 +[21:19:17.407] epoch: 0/20, iter: 37/42: loss:2.9969: rank:-1 +[21:19:28.116] epoch: 0/20, iter: 38/42: loss:4.085: rank:-1 +[21:19:49.217] epoch: 0/20, iter: 39/42: loss:4.404: rank:-1 +[21:20:03.205] epoch: 0/20, iter: 40/42: loss:5.6263: rank:-1 +[21:20:12.085] epoch: 0/20, iter: 41/42: loss:3.4617: rank:-1 +[21:20:12.088] - Train metrics: 4.736407 diff --git a/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-212200.log b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-212200.log new file mode 100644 index 0000000000000000000000000000000000000000..891c291df0314d1a6a943ae5d748beb5f35cd69f --- /dev/null +++ b/implementation/lits/segmamba_lits/train_segmamba_lits_20251228-212200.log @@ -0,0 +1,1279 @@ +[21:22:00.610] Namespace(data='lits', save_dir='./implementation/lits/segmamba_lits', data_dir='/teamspace/studios/this_studio/lits', num_workers=2, split='train', use_small_dataset=False, model_type='segmamba', lr=4e-05, lr_scheduler='linear', warm_up=False, device='cuda:0', max_epoch=20, image_size=128, batch_size=2, checkpoint='best', checkpoint_sam='./checkpoint_sam/sam_vit_b_01ec64.pth', num_classes=2, tolerance=5, boundary_kernel_size=5, use_pretrain=False, pretrain_path='', resume=False, resume_best=False, ddp=False, gpu_ids=[0, 1], accumulation_steps=20, iter_nums=11, num_clicks=50, num_clicks_validation=10, use_box=True, dynamic_box=False, use_scribble=True, num_multiple_outputs=3, multiple_outputs=True, refine=True, no_detach=False, refine_test=False, dynamic=True, efficient_scribble=True, use_sam3d_turbo=False, save_predictions=False, save_csv=False, save_test_dir='./', save_name='segmamba_lits') +[21:22:50.638] epoch: 0/20, iter: 0/42: loss:7.7643: rank:-1 +[21:23:12.007] epoch: 0/20, iter: 1/42: loss:7.6816: rank:-1 +[21:23:28.390] epoch: 0/20, iter: 2/42: loss:7.8668: rank:-1 +[21:23:53.464] epoch: 0/20, iter: 3/42: loss:7.2042: rank:-1 +[21:24:10.595] epoch: 0/20, iter: 4/42: loss:7.3394: rank:-1 +[21:24:23.173] epoch: 0/20, iter: 5/42: loss:7.031: rank:-1 +[21:24:43.030] epoch: 0/20, iter: 6/42: loss:6.1888: rank:-1 +[21:25:00.700] epoch: 0/20, iter: 7/42: loss:6.3632: rank:-1 +[21:25:18.184] epoch: 0/20, iter: 8/42: loss:6.112: rank:-1 +[21:25:42.628] epoch: 0/20, iter: 9/42: loss:4.7389: rank:-1 +[21:25:52.590] epoch: 0/20, iter: 10/42: loss:6.2234: rank:-1 +[21:26:13.378] epoch: 0/20, iter: 11/42: loss:4.9788: rank:-1 +[21:26:34.633] epoch: 0/20, iter: 12/42: loss:4.7268: rank:-1 +[21:26:46.208] epoch: 0/20, iter: 13/42: loss:5.7346: rank:-1 +[21:26:58.717] epoch: 0/20, iter: 14/42: loss:5.0716: rank:-1 +[21:27:11.747] epoch: 0/20, iter: 15/42: loss:5.0755: rank:-1 +[21:27:20.210] epoch: 0/20, iter: 16/42: loss:5.651: rank:-1 +[21:27:34.132] epoch: 0/20, iter: 17/42: loss:4.9922: rank:-1 +[21:27:56.642] epoch: 0/20, iter: 18/42: loss:4.3757: rank:-1 +[21:28:06.599] epoch: 0/20, iter: 19/42: loss:4.6099: rank:-1 +[21:28:17.337] epoch: 0/20, iter: 20/42: loss:5.1981: rank:-1 +[21:28:27.542] epoch: 0/20, iter: 21/42: loss:4.4029: rank:-1 +[21:28:43.183] epoch: 0/20, iter: 22/42: loss:4.8197: rank:-1 +[21:28:55.749] epoch: 0/20, iter: 23/42: loss:4.6227: rank:-1 +[21:29:16.619] epoch: 0/20, iter: 24/42: loss:5.8971: rank:-1 +[21:29:30.665] epoch: 0/20, iter: 25/42: loss:4.6182: rank:-1 +[21:29:43.851] epoch: 0/20, iter: 26/42: loss:6.1467: rank:-1 +[21:29:55.073] epoch: 0/20, iter: 27/42: loss:5.0781: rank:-1 +[21:30:09.642] epoch: 0/20, iter: 28/42: loss:4.4742: rank:-1 +[21:30:25.838] epoch: 0/20, iter: 29/42: loss:3.9636: rank:-1 +[21:30:45.929] epoch: 0/20, iter: 30/42: loss:4.2852: rank:-1 +[21:30:55.183] epoch: 0/20, iter: 31/42: loss:4.735: rank:-1 +[21:31:04.985] epoch: 0/20, iter: 32/42: loss:4.3038: rank:-1 +[21:31:17.986] epoch: 0/20, iter: 33/42: loss:4.6351: rank:-1 +[21:31:39.623] epoch: 0/20, iter: 34/42: loss:3.0373: rank:-1 +[21:31:55.949] epoch: 0/20, iter: 35/42: loss:4.745: rank:-1 +[21:32:06.577] epoch: 0/20, iter: 36/42: loss:4.023: rank:-1 +[21:32:17.858] epoch: 0/20, iter: 37/42: loss:4.4147: rank:-1 +[21:32:39.968] epoch: 0/20, iter: 38/42: loss:2.9668: rank:-1 +[21:32:55.926] epoch: 0/20, iter: 39/42: loss:3.9367: rank:-1 +[21:33:17.948] epoch: 0/20, iter: 40/42: loss:4.0132: rank:-1 +[21:33:25.484] epoch: 0/20, iter: 41/42: loss:3.8788: rank:-1 +[21:33:25.485] - Train metrics: 5.188704 +[21:33:29.455] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(195, device='cuda:0') +[21:33:34.015] dice before refine 0.0 and after 0.0, label 0: tensor(9, device='cuda:0'), label 1: tensor(177, device='cuda:0') +[21:33:34.470] dice before refine 0.0 and after 0.00048426148714497685, label 0: tensor(0, device='cuda:0'), label 1: tensor(382, device='cuda:0') +[21:33:41.447] dice before refine 0.0 and after 0.011266163550317287, label 0: tensor(62, device='cuda:0'), label 1: tensor(439, device='cuda:0') +[21:33:41.814] dice before refine 0.006399999838322401 and after 0.003657938214018941, label 0: tensor(0, device='cuda:0'), label 1: tensor(39, device='cuda:0') +[21:33:45.176] dice before refine 0.007054673507809639 and after 0.009987261146306992, label 0: tensor(18, device='cuda:0'), label 1: tensor(60, device='cuda:0') +[21:33:45.588] dice before refine 0.0 and after 0.00017222078167833388, label 0: tensor(0, device='cuda:0'), label 1: tensor(182, device='cuda:0') +[21:33:54.471] dice before refine 0.0 and after 0.005602696910500526, label 0: tensor(510, device='cuda:0'), label 1: tensor(380, device='cuda:0') +[21:33:54.889] dice before refine 0.0 and after 0.001317749498412013, label 0: tensor(0, device='cuda:0'), label 1: tensor(260, device='cuda:0') +[21:34:01.527] dice before refine 0.0 and after 0.008733624592423439, label 0: tensor(53, device='cuda:0'), label 1: tensor(355, device='cuda:0') +[21:34:02.077] epoch: 0/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.0013567869464168325 stich left and right side (total size): 1 +[21:34:02.596] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(90, device='cuda:0') +[21:34:07.256] dice before refine 0.0 and after 0.0, label 0: tensor(77, device='cuda:0'), label 1: tensor(115, device='cuda:0') +[21:34:07.626] dice before refine 0.0033370412420481443 and after 0.015297775156795979, label 0: tensor(0, device='cuda:0'), label 1: tensor(87, device='cuda:0') +[21:34:15.022] dice before refine 0.002934272401034832 and after 0.05618207901716232, label 0: tensor(355, device='cuda:0'), label 1: tensor(291, device='cuda:0') +[21:34:15.412] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(85, device='cuda:0') +[21:34:19.957] dice before refine 0.0 and after 0.0006927606300450861, label 0: tensor(80, device='cuda:0'), label 1: tensor(95, device='cuda:0') +[21:34:20.331] dice before refine 0.004847832024097443 and after 0.01776573248207569, label 0: tensor(0, device='cuda:0'), label 1: tensor(97, device='cuda:0') +[21:34:28.233] dice before refine 0.004127358552068472 and after 0.07265148311853409, label 0: tensor(445, device='cuda:0'), label 1: tensor(275, device='cuda:0') +[21:34:29.441] epoch: 0/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.0363835563713854 stich left and right side (total size): 1 +[21:34:29.956] dice before refine 0.00042682146886363626 and after 0.0014713996788486838, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:34:36.814] dice before refine 0.0003415592072997242 and after 0.05418814346194267, label 0: tensor(3, device='cuda:0'), label 1: tensor(507, device='cuda:0') +[21:34:37.376] dice before refine 0.0038961186073720455 and after 0.3163600265979767, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:34:44.881] dice before refine 0.003805597312748432 and after 0.3643198013305664, label 0: tensor(7, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:34:45.555] dice before refine 0.0003809300542343408 and after 0.06998071074485779, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:34:56.130] dice before refine 0.00023444482940249145 and after 0.07545099407434464, label 0: tensor(157, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:34:56.965] dice before refine 0.0012250742875039577 and after 0.040976352989673615, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:35:07.108] dice before refine 0.0013515222817659378 and after 0.06268169730901718, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:35:07.559] dice before refine 0.0008709077374078333 and after 0.02366194874048233, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:35:14.900] dice before refine 0.0007929271087050438 and after 0.10599236190319061, label 0: tensor(51, device='cuda:0'), label 1: tensor(504, device='cuda:0') +[21:35:15.482] dice before refine 0.0020348343532532454 and after 0.1640280783176422, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:35:24.808] dice before refine 0.0022041103802621365 and after 0.24722982943058014, label 0: tensor(135, device='cuda:0'), label 1: tensor(509, device='cuda:0') +[21:35:25.602] dice before refine 0.00161983713041991 and after 0.1751549243927002, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:35:35.752] dice before refine 0.0016068993136286736 and after 0.19048093259334564, label 0: tensor(61, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:35:36.614] dice before refine 0.001275671529583633 and after 0.03225815296173096, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:35:46.975] dice before refine 0.0013093675952404737 and after 0.04452347382903099, label 0: tensor(19, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:35:47.653] epoch: 0/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.08414647118611769 stich left and right side (total size): 1 +[21:35:48.167] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[21:35:51.049] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +[21:35:51.429] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[21:35:54.274] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +[21:35:54.719] epoch: 0/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +[21:35:55.186] dice before refine 0.0 and after 0.026678141206502914, label 0: tensor(0, device='cuda:0'), label 1: tensor(168, device='cuda:0') +[21:35:59.697] dice before refine 0.0 and after 0.20212766528129578, label 0: tensor(3, device='cuda:0'), label 1: tensor(207, device='cuda:0') +[21:36:00.117] dice before refine 0.00045320644858293235 and after 0.19218826293945312, label 0: tensor(0, device='cuda:0'), label 1: tensor(497, device='cuda:0') +[21:36:06.726] dice before refine 0.0004534119216259569 and after 0.42451760172843933, label 0: tensor(35, device='cuda:0'), label 1: tensor(508, device='cuda:0') +[21:36:07.100] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(179, device='cuda:0') +[21:36:11.217] dice before refine 0.0 and after 0.24053724110126495, label 0: tensor(0, device='cuda:0'), label 1: tensor(180, device='cuda:0') +[21:36:11.633] dice before refine 0.0017929179593920708 and after 0.24622531235218048, label 0: tensor(0, device='cuda:0'), label 1: tensor(522, device='cuda:0') +[21:36:18.066] dice before refine 0.0013428827514871955 and after 0.4330326020717621, label 0: tensor(32, device='cuda:0'), label 1: tensor(376, device='cuda:0') +[21:36:18.446] dice before refine 0.0015461924485862255 and after 0.04390612989664078, label 0: tensor(0, device='cuda:0'), label 1: tensor(235, device='cuda:0') +[21:36:23.430] dice before refine 0.0015461924485862255 and after 0.3457106351852417, label 0: tensor(0, device='cuda:0'), label 1: tensor(264, device='cuda:0') +[21:36:23.857] dice before refine 0.003975213505327702 and after 0.3840511441230774, label 0: tensor(0, device='cuda:0'), label 1: tensor(526, device='cuda:0') +[21:36:30.475] dice before refine 0.003976142965257168 and after 0.5473897457122803, label 0: tensor(17, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:36:30.857] dice before refine 0.0007733951788395643 and after 0.05251313000917435, label 0: tensor(0, device='cuda:0'), label 1: tensor(202, device='cuda:0') +[21:36:36.035] dice before refine 0.0007733951788395643 and after 0.3332263231277466, label 0: tensor(0, device='cuda:0'), label 1: tensor(388, device='cuda:0') +[21:36:36.460] dice before refine 0.0030352557078003883 and after 0.3505442440509796, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:36:42.942] dice before refine 0.0030356100760400295 and after 0.5535772442817688, label 0: tensor(6, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:36:43.673] epoch: 0/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.42724333026192407 stich left and right side (total size): 1 +[21:36:44.172] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(158, device='cuda:0') +[21:36:48.139] dice before refine 0.0 and after 0.0, label 0: tensor(11, device='cuda:0'), label 1: tensor(107, device='cuda:0') +[21:36:48.564] dice before refine 0.0 and after 0.04056854173541069, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:36:58.916] dice before refine 0.0 and after 0.0423901341855526, label 0: tensor(506, device='cuda:0'), label 1: tensor(504, device='cuda:0') +[21:36:59.359] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(158, device='cuda:0') +[21:37:03.033] dice before refine 0.0 and after 0.0, label 0: tensor(5, device='cuda:0'), label 1: tensor(185, device='cuda:0') +[21:37:03.513] dice before refine 0.006486621219664812 and after 0.369735985994339, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:37:13.387] dice before refine 0.005431898403912783 and after 0.4143142104148865, label 0: tensor(327, device='cuda:0'), label 1: tensor(508, device='cuda:0') +[21:37:14.284] epoch: 0/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.3024583784016696 stich left and right side (total size): 1 +[21:37:14.713] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(44, device='cuda:0') +[21:37:18.480] dice before refine 0.0 and after 0.0, label 0: tensor(58, device='cuda:0'), label 1: tensor(36, device='cuda:0') +[21:37:18.845] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(43, device='cuda:0') +[21:37:22.584] dice before refine 0.0 and after 0.0, label 0: tensor(57, device='cuda:0'), label 1: tensor(34, device='cuda:0') +[21:37:22.956] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(126, device='cuda:0') +[21:37:28.349] dice before refine 0.0 and after 0.0, label 0: tensor(94, device='cuda:0'), label 1: tensor(153, device='cuda:0') +[21:37:28.721] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(113, device='cuda:0') +[21:37:34.971] dice before refine 0.0 and after 0.0, label 0: tensor(160, device='cuda:0'), label 1: tensor(132, device='cuda:0') +[21:37:35.344] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(168, device='cuda:0') +[21:37:39.444] dice before refine 0.0 and after 0.0, label 0: tensor(47, device='cuda:0'), label 1: tensor(100, device='cuda:0') +[21:37:39.821] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(155, device='cuda:0') +[21:37:44.129] dice before refine 0.0 and after 0.0, label 0: tensor(32, device='cuda:0'), label 1: tensor(160, device='cuda:0') +[21:37:44.504] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(94, device='cuda:0') +[21:37:51.038] dice before refine 0.0 and after 0.0, label 0: tensor(312, device='cuda:0'), label 1: tensor(104, device='cuda:0') +[21:37:51.420] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(152, device='cuda:0') +[21:37:58.007] dice before refine 0.0 and after 0.0, label 0: tensor(222, device='cuda:0'), label 1: tensor(102, device='cuda:0') +[21:37:58.686] epoch: 0/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +[21:37:59.176] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(482, device='cuda:0') +[21:38:07.459] dice before refine 0.0 and after 0.01078427117317915, label 0: tensor(157, device='cuda:0'), label 1: tensor(503, device='cuda:0') +[21:38:07.903] dice before refine 0.0 and after 0.020714227110147476, label 0: tensor(0, device='cuda:0'), label 1: tensor(458, device='cuda:0') +[21:38:16.913] dice before refine 0.0 and after 0.10523897409439087, label 0: tensor(278, device='cuda:0'), label 1: tensor(505, device='cuda:0') +[21:38:17.334] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(336, device='cuda:0') +[21:38:24.716] dice before refine 0.0 and after 0.07778224349021912, label 0: tensor(102, device='cuda:0'), label 1: tensor(506, device='cuda:0') +[21:38:25.140] dice before refine 0.0008363535162061453 and after 0.19942976534366608, label 0: tensor(0, device='cuda:0'), label 1: tensor(423, device='cuda:0') +[21:38:33.205] dice before refine 0.0005593623500317335 and after 0.3474556505680084, label 0: tensor(171, device='cuda:0'), label 1: tensor(506, device='cuda:0') +[21:38:33.749] dice before refine 0.0002693675342015922 and after 0.047121383249759674, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:38:44.638] dice before refine 5.3998595831217244e-05 and after 0.07831805944442749, label 0: tensor(335, device='cuda:0'), label 1: tensor(508, device='cuda:0') +[21:38:45.174] dice before refine 5.681818220182322e-05 and after 0.01607510820031166, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:38:56.046] dice before refine 5.6882821809267625e-05 and after 0.03483671694993973, label 0: tensor(333, device='cuda:0'), label 1: tensor(508, device='cuda:0') +[21:38:56.575] dice before refine 7.419223402393982e-05 and after 0.008586850017309189, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:39:07.976] dice before refine 0.0 and after 0.02824566885828972, label 0: tensor(447, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:39:08.504] dice before refine 0.0 and after 0.014310820959508419, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:39:20.206] dice before refine 0.0 and after 0.044880203902721405, label 0: tensor(550, device='cuda:0'), label 1: tensor(509, device='cuda:0') +[21:39:20.797] epoch: 0/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.028557270595973187 stich left and right side (total size): 1 +[21:39:21.315] dice before refine 0.0018885741010308266 and after 0.00035631569335237145, label 0: tensor(0, device='cuda:0'), label 1: tensor(113, device='cuda:0') +[21:39:26.217] dice before refine 0.0012618296314030886 and after 0.21877044439315796, label 0: tensor(6, device='cuda:0'), label 1: tensor(397, device='cuda:0') +[21:39:26.599] dice before refine 0.013174404390156269 and after 0.2222222238779068, label 0: tensor(0, device='cuda:0'), label 1: tensor(139, device='cuda:0') +[21:39:31.908] dice before refine 0.013182674534618855 and after 0.4482811689376831, label 0: tensor(8, device='cuda:0'), label 1: tensor(319, device='cuda:0') +[21:39:32.290] dice before refine 0.002541295951232314 and after 0.058986175805330276, label 0: tensor(0, device='cuda:0'), label 1: tensor(174, device='cuda:0') +[21:39:37.518] dice before refine 0.0031746032182127237 and after 0.4885386824607849, label 0: tensor(1, device='cuda:0'), label 1: tensor(281, device='cuda:0') +[21:39:37.900] dice before refine 0.008199306204915047 and after 0.22797131538391113, label 0: tensor(0, device='cuda:0'), label 1: tensor(127, device='cuda:0') +[21:39:43.484] dice before refine 0.008824456483125687 and after 0.5757325887680054, label 0: tensor(0, device='cuda:0'), label 1: tensor(307, device='cuda:0') +[21:39:43.937] epoch: 0/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.2919971617785367 stich left and right side (total size): 1 +[21:39:44.481] dice before refine 0.000302236556308344 and after 0.028667518869042397, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:39:53.350] dice before refine 0.00030295379110611975 and after 0.07540111988782883, label 0: tensor(228, device='cuda:0'), label 1: tensor(504, device='cuda:0') +[21:39:53.851] dice before refine 0.00032601962448097765 and after 0.04785635322332382, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:40:03.182] dice before refine 0.0002611733216326684 and after 0.08644517511129379, label 0: tensor(263, device='cuda:0'), label 1: tensor(509, device='cuda:0') +[21:40:03.643] dice before refine 0.015483114868402481 and after 0.48169299960136414, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:40:13.892] dice before refine 0.005254682619124651 and after 0.5739263296127319, label 0: tensor(505, device='cuda:0'), label 1: tensor(505, device='cuda:0') +[21:40:14.368] dice before refine 0.02493993751704693 and after 0.5771890878677368, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:40:24.847] dice before refine 0.012753534130752087 and after 0.671230673789978, label 0: tensor(474, device='cuda:0'), label 1: tensor(507, device='cuda:0') +[21:40:25.427] dice before refine 0.0010375387500971556 and after 0.06997781991958618, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:40:37.786] dice before refine 0.0006924608605913818 and after 0.11106137931346893, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +[21:40:38.396] dice before refine 0.0014959349064156413 and after 0.11465582251548767, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:40:49.982] dice before refine 0.0009327650186605752 and after 0.1443548947572708, label 0: tensor(342, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:40:50.431] dice before refine 0.0009462528396397829 and after 0.08038022369146347, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:41:00.726] dice before refine 0.00019056693417951465 and after 0.1852818727493286, label 0: tensor(419, device='cuda:0'), label 1: tensor(506, device='cuda:0') +[21:41:01.181] dice before refine 0.0033195021096616983 and after 0.14563831686973572, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:41:08.395] dice before refine 0.0029069767333567142 and after 0.21290284395217896, label 0: tensor(82, device='cuda:0'), label 1: tensor(504, device='cuda:0') +[21:41:08.950] epoch: 0/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.22139538011767648 stich left and right side (total size): 1 +[21:41:09.470] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(20, device='cuda:0') +[21:41:12.470] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(25, device='cuda:0') +[21:41:12.823] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(28, device='cuda:0') +[21:41:15.771] dice before refine 0.0 and after 0.0, label 0: tensor(9, device='cuda:0'), label 1: tensor(22, device='cuda:0') +[21:41:16.385] epoch: 0/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +[21:41:16.386] - Val metrics mean dice: 0.12668530324179092 +[21:41:17.015] - Val metrics best mean dice: 0.12668530324179092 at epoch 0 +[21:41:40.236] epoch: 1/20, iter: 0/42: loss:3.7377: rank:-1 +[21:41:50.081] epoch: 1/20, iter: 1/42: loss:4.1152: rank:-1 +[21:42:02.097] epoch: 1/20, iter: 2/42: loss:4.3866: rank:-1 +[21:42:21.174] epoch: 1/20, iter: 3/42: loss:3.2495: rank:-1 +[21:42:37.133] epoch: 1/20, iter: 4/42: loss:3.5876: rank:-1 +[21:42:56.360] epoch: 1/20, iter: 5/42: loss:4.1841: rank:-1 +[21:43:07.596] epoch: 1/20, iter: 6/42: loss:3.3689: rank:-1 +[21:43:18.101] epoch: 1/20, iter: 7/42: loss:3.5175: rank:-1 +[21:43:40.401] epoch: 1/20, iter: 8/42: loss:2.8581: rank:-1 +[21:44:04.699] epoch: 1/20, iter: 9/42: loss:2.4715: rank:-1 +[21:44:16.939] epoch: 1/20, iter: 10/42: loss:3.4599: rank:-1 +[21:44:25.642] epoch: 1/20, iter: 11/42: loss:4.4791: rank:-1 +[21:44:36.714] epoch: 1/20, iter: 12/42: loss:4.3862: rank:-1 +[21:44:55.985] epoch: 1/20, iter: 13/42: loss:4.0136: rank:-1 +[21:45:19.876] epoch: 1/20, iter: 14/42: loss:4.4249: rank:-1 +[21:45:37.501] epoch: 1/20, iter: 15/42: loss:3.9379: rank:-1 +[21:45:55.269] epoch: 1/20, iter: 16/42: loss:4.0784: rank:-1 +[21:46:16.145] epoch: 1/20, iter: 17/42: loss:3.5738: rank:-1 +[21:46:43.897] epoch: 1/20, iter: 18/42: loss:4.1122: rank:-1 +[21:46:53.840] epoch: 1/20, iter: 19/42: loss:3.7243: rank:-1 +[21:47:09.752] epoch: 1/20, iter: 20/42: loss:3.5075: rank:-1 +[21:47:24.907] epoch: 1/20, iter: 21/42: loss:2.7696: rank:-1 +[21:47:41.074] epoch: 1/20, iter: 22/42: loss:3.0569: rank:-1 +[21:47:58.127] epoch: 1/20, iter: 23/42: loss:4.734: rank:-1 +[21:48:13.789] epoch: 1/20, iter: 24/42: loss:3.8168: rank:-1 +[21:48:39.553] epoch: 1/20, iter: 25/42: loss:2.2866: rank:-1 +[21:48:50.613] epoch: 1/20, iter: 26/42: loss:4.2865: rank:-1 +[21:49:02.678] epoch: 1/20, iter: 27/42: loss:3.64: rank:-1 +[21:49:24.081] epoch: 1/20, iter: 28/42: loss:3.2795: rank:-1 +[21:49:36.549] epoch: 1/20, iter: 29/42: loss:3.3827: rank:-1 +[21:49:58.116] epoch: 1/20, iter: 30/42: loss:2.693: rank:-1 +[21:50:18.337] epoch: 1/20, iter: 31/42: loss:3.1584: rank:-1 +[21:50:28.146] epoch: 1/20, iter: 32/42: loss:4.1169: rank:-1 +[21:50:56.548] epoch: 1/20, iter: 33/42: loss:5.9586: rank:-1 +[21:51:15.396] epoch: 1/20, iter: 34/42: loss:3.4004: rank:-1 +[21:51:40.451] epoch: 1/20, iter: 35/42: loss:2.0897: rank:-1 +[21:51:59.536] epoch: 1/20, iter: 36/42: loss:2.3034: rank:-1 +[21:52:20.837] epoch: 1/20, iter: 37/42: loss:2.8798: rank:-1 +[21:52:36.082] epoch: 1/20, iter: 38/42: loss:4.0638: rank:-1 +[21:52:55.971] epoch: 1/20, iter: 39/42: loss:3.4877: rank:-1 +[21:53:10.333] epoch: 1/20, iter: 40/42: loss:2.874: rank:-1 +[21:53:20.556] epoch: 1/20, iter: 41/42: loss:2.6461: rank:-1 +[21:53:20.557] - Train metrics: 3.5737934 +[21:53:24.272] dice before refine 0.003340480849146843 and after 0.015238719061017036, label 0: tensor(0, device='cuda:0'), label 1: tensor(190, device='cuda:0') +[21:53:29.815] dice before refine 0.0018803725251927972 and after 0.0546722449362278, label 0: tensor(109, device='cuda:0'), label 1: tensor(164, device='cuda:0') +[21:53:30.268] dice before refine 0.000777076231315732 and after 0.05481570586562157, label 0: tensor(0, device='cuda:0'), label 1: tensor(384, device='cuda:0') +[21:53:38.774] dice before refine 0.0005091811763122678 and after 0.1332227885723114, label 0: tensor(312, device='cuda:0'), label 1: tensor(382, device='cuda:0') +[21:53:39.135] dice before refine 0.026561731472611427 and after 0.023694733157753944, label 0: tensor(0, device='cuda:0'), label 1: tensor(36, device='cuda:0') +[21:53:43.306] dice before refine 0.02675613760948181 and after 0.023605462163686752, label 0: tensor(158, device='cuda:0'), label 1: tensor(12, device='cuda:0') +[21:53:43.726] dice before refine 0.01709246262907982 and after 0.030085531994700432, label 0: tensor(0, device='cuda:0'), label 1: tensor(253, device='cuda:0') +[21:53:52.439] dice before refine 0.01608228124678135 and after 0.07126905769109726, label 0: tensor(509, device='cuda:0'), label 1: tensor(153, device='cuda:0') +[21:53:52.860] dice before refine 0.0 and after 0.06913086771965027, label 0: tensor(0, device='cuda:0'), label 1: tensor(287, device='cuda:0') +[21:53:59.419] dice before refine 0.0 and after 0.5300309658050537, label 0: tensor(73, device='cuda:0'), label 1: tensor(366, device='cuda:0') +[21:53:59.933] epoch: 1/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.04953528822145679 stich left and right side (total size): 1 +[21:54:00.468] dice before refine 0.0005402219831012189 and after 0.00018795226060319692, label 0: tensor(0, device='cuda:0'), label 1: tensor(108, device='cuda:0') +[21:54:07.602] dice before refine 0.00045618126750923693 and after 0.005249076522886753, label 0: tensor(510, device='cuda:0'), label 1: tensor(107, device='cuda:0') +[21:54:07.972] dice before refine 0.039232052862644196 and after 0.04670967161655426, label 0: tensor(0, device='cuda:0'), label 1: tensor(99, device='cuda:0') +[21:54:15.565] dice before refine 0.03959696739912033 and after 0.07602180540561676, label 0: tensor(510, device='cuda:0'), label 1: tensor(179, device='cuda:0') +[21:54:15.974] dice before refine 0.001134816207922995 and after 0.0007874015718698502, label 0: tensor(0, device='cuda:0'), label 1: tensor(155, device='cuda:0') +[21:54:22.079] dice before refine 0.0007910188869573176 and after 0.016381919384002686, label 0: tensor(294, device='cuda:0'), label 1: tensor(192, device='cuda:0') +[21:54:22.453] dice before refine 0.034989919513463974 and after 0.04875690117478371, label 0: tensor(0, device='cuda:0'), label 1: tensor(121, device='cuda:0') +[21:54:30.206] dice before refine 0.03728582710027695 and after 0.11566172540187836, label 0: tensor(509, device='cuda:0'), label 1: tensor(201, device='cuda:0') +[21:54:31.530] epoch: 1/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.06609219448132948 stich left and right side (total size): 1 +[21:54:32.052] dice before refine 0.1727641075849533 and after 0.22971299290657043, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:54:39.199] dice before refine 0.2290586233139038 and after 0.5419644117355347, label 0: tensor(55, device='cuda:0'), label 1: tensor(504, device='cuda:0') +[21:54:39.765] dice before refine 0.6828361749649048 and after 0.7100183963775635, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:54:49.607] dice before refine 0.7210025787353516 and after 0.812035083770752, label 0: tensor(346, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:54:50.287] dice before refine 0.43470498919487 and after 0.443069726228714, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:54:58.651] dice before refine 0.45325762033462524 and after 0.49985530972480774, label 0: tensor(31, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:54:59.489] dice before refine 0.3868134319782257 and after 0.43968045711517334, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:55:10.330] dice before refine 0.42541539669036865 and after 0.5145308375358582, label 0: tensor(97, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:55:10.785] dice before refine 0.13374046981334686 and after 0.12191975116729736, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:55:19.371] dice before refine 0.13193561136722565 and after 0.33539244532585144, label 0: tensor(161, device='cuda:0'), label 1: tensor(507, device='cuda:0') +[21:55:19.946] dice before refine 0.09640924632549286 and after 0.07208490371704102, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:55:28.424] dice before refine 0.10521295666694641 and after 0.18768863379955292, label 0: tensor(73, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:55:29.201] dice before refine 0.4189198613166809 and after 0.44261839985847473, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:55:38.695] dice before refine 0.44351834058761597 and after 0.485770583152771, label 0: tensor(47, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:55:39.525] dice before refine 0.22443927824497223 and after 0.23095321655273438, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:55:51.994] dice before refine 0.23984569311141968 and after 0.26615944504737854, label 0: tensor(233, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:55:52.671] epoch: 1/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.4145325070077723 stich left and right side (total size): 1 +[21:55:53.187] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[21:55:56.031] dice before refine 0.0 and after 0.0, label 0: tensor(3, device='cuda:0'), label 1: tensor(7, device='cuda:0') +[21:55:56.407] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[21:55:59.260] dice before refine 0.0 and after 0.0, label 0: tensor(2, device='cuda:0'), label 1: tensor(8, device='cuda:0') +[21:55:59.638] epoch: 1/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +[21:56:00.100] dice before refine 0.0 and after 0.010077178478240967, label 0: tensor(0, device='cuda:0'), label 1: tensor(155, device='cuda:0') +[21:56:04.527] dice before refine 0.0 and after 0.06718818098306656, label 0: tensor(39, device='cuda:0'), label 1: tensor(75, device='cuda:0') +[21:56:04.944] dice before refine 0.040945131331682205 and after 0.12534186244010925, label 0: tensor(0, device='cuda:0'), label 1: tensor(506, device='cuda:0') +[21:56:10.814] dice before refine 0.041124165058135986 and after 0.27250775694847107, label 0: tensor(63, device='cuda:0'), label 1: tensor(229, device='cuda:0') +[21:56:11.203] dice before refine 0.011595971882343292 and after 0.15169847011566162, label 0: tensor(0, device='cuda:0'), label 1: tensor(172, device='cuda:0') +[21:56:15.287] dice before refine 0.011560693383216858 and after 0.6383712887763977, label 0: tensor(32, device='cuda:0'), label 1: tensor(132, device='cuda:0') +[21:56:15.702] dice before refine 0.06213347613811493 and after 0.1426905393600464, label 0: tensor(0, device='cuda:0'), label 1: tensor(503, device='cuda:0') +[21:56:21.989] dice before refine 0.060316428542137146 and after 0.2924569249153137, label 0: tensor(88, device='cuda:0'), label 1: tensor(254, device='cuda:0') +[21:56:22.378] dice before refine 0.0025343953166157007 and after 0.02253587916493416, label 0: tensor(0, device='cuda:0'), label 1: tensor(367, device='cuda:0') +[21:56:27.922] dice before refine 0.0021678106859326363 and after 0.08523908257484436, label 0: tensor(63, device='cuda:0'), label 1: tensor(184, device='cuda:0') +[21:56:28.352] dice before refine 0.25951817631721497 and after 0.45987674593925476, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:56:35.179] dice before refine 0.2636151909828186 and after 0.7392035722732544, label 0: tensor(115, device='cuda:0'), label 1: tensor(339, device='cuda:0') +[21:56:35.561] dice before refine 0.035682689398527145 and after 0.0994846522808075, label 0: tensor(0, device='cuda:0'), label 1: tensor(241, device='cuda:0') +[21:56:40.080] dice before refine 0.03980099409818649 and after 0.6023444533348083, label 0: tensor(39, device='cuda:0'), label 1: tensor(155, device='cuda:0') +[21:56:40.504] dice before refine 0.2674132287502289 and after 0.28182780742645264, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:56:47.423] dice before refine 0.2776637077331543 and after 0.5020270943641663, label 0: tensor(105, device='cuda:0'), label 1: tensor(320, device='cuda:0') +[21:56:48.124] epoch: 1/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.2821330468763005 stich left and right side (total size): 1 +[21:56:48.633] dice before refine 0.0 and after 5.2893261454300955e-05, label 0: tensor(0, device='cuda:0'), label 1: tensor(103, device='cuda:0') +[21:56:52.973] dice before refine 0.0 and after 0.014423954300582409, label 0: tensor(59, device='cuda:0'), label 1: tensor(84, device='cuda:0') +[21:56:53.388] dice before refine 0.13637873530387878 and after 0.21381323039531708, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:57:01.163] dice before refine 0.14006111025810242 and after 0.5794454216957092, label 0: tensor(143, device='cuda:0'), label 1: tensor(430, device='cuda:0') +[21:57:01.610] dice before refine 0.0 and after 0.002095150528475642, label 0: tensor(0, device='cuda:0'), label 1: tensor(94, device='cuda:0') +[21:57:05.707] dice before refine 0.0 and after 0.02576112374663353, label 0: tensor(56, device='cuda:0'), label 1: tensor(98, device='cuda:0') +[21:57:06.204] dice before refine 0.5483456254005432 and after 0.5501400828361511, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:57:16.506] dice before refine 0.5774121880531311 and after 0.7540242671966553, label 0: tensor(514, device='cuda:0'), label 1: tensor(504, device='cuda:0') +[21:57:17.473] epoch: 1/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.2878344424746253 stich left and right side (total size): 1 +[21:57:17.895] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(44, device='cuda:0') +[21:57:21.673] dice before refine 0.0 and after 0.0, label 0: tensor(106, device='cuda:0'), label 1: tensor(32, device='cuda:0') +[21:57:22.033] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(45, device='cuda:0') +[21:57:25.300] dice before refine 0.0 and after 0.0, label 0: tensor(25, device='cuda:0'), label 1: tensor(33, device='cuda:0') +[21:57:25.672] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(135, device='cuda:0') +[21:57:32.994] dice before refine 0.0 and after 0.06005706265568733, label 0: tensor(509, device='cuda:0'), label 1: tensor(104, device='cuda:0') +[21:57:33.365] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(96, device='cuda:0') +[21:57:37.439] dice before refine 0.0 and after 0.00808135885745287, label 0: tensor(38, device='cuda:0'), label 1: tensor(132, device='cuda:0') +[21:57:37.811] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(122, device='cuda:0') +[21:57:41.685] dice before refine 0.0 and after 0.01133907400071621, label 0: tensor(25, device='cuda:0'), label 1: tensor(118, device='cuda:0') +[21:57:42.061] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(135, device='cuda:0') +[21:57:46.259] dice before refine 0.0 and after 0.017273690551519394, label 0: tensor(30, device='cuda:0'), label 1: tensor(123, device='cuda:0') +[21:57:46.633] dice before refine 0.0004007012175861746 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(129, device='cuda:0') +[21:57:54.069] dice before refine 0.0003573342983145267 and after 0.20065905153751373, label 0: tensor(510, device='cuda:0'), label 1: tensor(81, device='cuda:0') +[21:57:54.450] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(121, device='cuda:0') +[21:58:01.142] dice before refine 0.0 and after 0.1853710561990738, label 0: tensor(140, device='cuda:0'), label 1: tensor(207, device='cuda:0') +[21:58:01.895] epoch: 1/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.016184079206802628 stich left and right side (total size): 1 +[21:58:02.388] dice before refine 0.13980938494205475 and after 0.17563876509666443, label 0: tensor(0, device='cuda:0'), label 1: tensor(529, device='cuda:0') +[21:58:11.097] dice before refine 0.1509052962064743 and after 0.26588866114616394, label 0: tensor(557, device='cuda:0'), label 1: tensor(246, device='cuda:0') +[21:58:11.532] dice before refine 0.17059260606765747 and after 0.18398119509220123, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:58:20.431] dice before refine 0.18075956404209137 and after 0.275420218706131, label 0: tensor(510, device='cuda:0'), label 1: tensor(187, device='cuda:0') +[21:58:20.855] dice before refine 0.08281469345092773 and after 0.19250275194644928, label 0: tensor(0, device='cuda:0'), label 1: tensor(480, device='cuda:0') +[21:58:29.703] dice before refine 0.08583156019449234 and after 0.493971049785614, label 0: tensor(328, device='cuda:0'), label 1: tensor(317, device='cuda:0') +[21:58:30.124] dice before refine 0.05358508229255676 and after 0.10520032048225403, label 0: tensor(0, device='cuda:0'), label 1: tensor(385, device='cuda:0') +[21:58:40.146] dice before refine 0.05447370931506157 and after 0.33316150307655334, label 0: tensor(509, device='cuda:0'), label 1: tensor(425, device='cuda:0') +[21:58:40.685] dice before refine 0.4587603807449341 and after 0.46844449639320374, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:58:52.322] dice before refine 0.45758816599845886 and after 0.6479492783546448, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +[21:58:52.860] dice before refine 0.45574504137039185 and after 0.45912596583366394, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:59:04.026] dice before refine 0.45428794622421265 and after 0.6576166749000549, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +[21:59:04.553] dice before refine 0.32414883375167847 and after 0.3593980669975281, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:59:15.734] dice before refine 0.33066532015800476 and after 0.5967575311660767, label 0: tensor(504, device='cuda:0'), label 1: tensor(506, device='cuda:0') +[21:59:16.281] dice before refine 0.34057918190956116 and after 0.3618077337741852, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[21:59:27.362] dice before refine 0.341221421957016 and after 0.6098010540008545, label 0: tensor(543, device='cuda:0'), label 1: tensor(506, device='cuda:0') +[21:59:27.866] epoch: 1/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.3736454112963243 stich left and right side (total size): 1 +[21:59:28.368] dice before refine 0.2791828215122223 and after 0.2549408972263336, label 0: tensor(0, device='cuda:0'), label 1: tensor(102, device='cuda:0') +[21:59:33.393] dice before refine 0.3240678012371063 and after 0.3245672583580017, label 0: tensor(272, device='cuda:0'), label 1: tensor(70, device='cuda:0') +[21:59:33.769] dice before refine 0.5171263813972473 and after 0.5345258116722107, label 0: tensor(0, device='cuda:0'), label 1: tensor(149, device='cuda:0') +[21:59:38.301] dice before refine 0.4808308184146881 and after 0.6292572021484375, label 0: tensor(182, device='cuda:0'), label 1: tensor(79, device='cuda:0') +[21:59:38.680] dice before refine 0.5753604173660278 and after 0.5632568001747131, label 0: tensor(0, device='cuda:0'), label 1: tensor(188, device='cuda:0') +[21:59:43.481] dice before refine 0.593384325504303 and after 0.6970019936561584, label 0: tensor(142, device='cuda:0'), label 1: tensor(108, device='cuda:0') +[21:59:43.858] dice before refine 0.5646978616714478 and after 0.6109082102775574, label 0: tensor(0, device='cuda:0'), label 1: tensor(164, device='cuda:0') +[21:59:48.572] dice before refine 0.5773726105690002 and after 0.737730085849762, label 0: tensor(173, device='cuda:0'), label 1: tensor(76, device='cuda:0') +[21:59:49.004] epoch: 1/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.6285893808711659 stich left and right side (total size): 1 +[21:59:49.534] dice before refine 0.03501142933964729 and after 0.03513247147202492, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:00:00.296] dice before refine 0.037149377167224884 and after 0.06667641550302505, label 0: tensor(509, device='cuda:0'), label 1: tensor(501, device='cuda:0') +[22:00:00.796] dice before refine 0.03947385773062706 and after 0.03859706595540047, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:00:12.058] dice before refine 0.04207717999815941 and after 0.07039148360490799, label 0: tensor(507, device='cuda:0'), label 1: tensor(503, device='cuda:0') +[22:00:12.521] dice before refine 0.46548664569854736 and after 0.48316338658332825, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:00:22.890] dice before refine 0.4956962764263153 and after 0.6622840166091919, label 0: tensor(505, device='cuda:0'), label 1: tensor(505, device='cuda:0') +[22:00:23.362] dice before refine 0.4767422378063202 and after 0.48062893748283386, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:00:34.192] dice before refine 0.49934789538383484 and after 0.6445888876914978, label 0: tensor(504, device='cuda:0'), label 1: tensor(506, device='cuda:0') +[22:00:34.773] dice before refine 0.476798415184021 and after 0.46645140647888184, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:00:46.377] dice before refine 0.47586119174957275 and after 0.5562226176261902, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +[22:00:46.996] dice before refine 0.4385472536087036 and after 0.4328904151916504, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:00:58.836] dice before refine 0.4384496510028839 and after 0.510100245475769, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +[22:00:59.280] dice before refine 0.24861639738082886 and after 0.2808257043361664, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:01:08.470] dice before refine 0.26225438714027405 and after 0.6151355504989624, label 0: tensor(347, device='cuda:0'), label 1: tensor(505, device='cuda:0') +[22:01:08.897] dice before refine 0.254607617855072 and after 0.26440247893333435, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:01:16.109] dice before refine 0.26055312156677246 and after 0.6527829170227051, label 0: tensor(93, device='cuda:0'), label 1: tensor(507, device='cuda:0') +[22:01:16.656] epoch: 1/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.4188787476582961 stich left and right side (total size): 1 +[22:01:17.173] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(26, device='cuda:0') +[22:01:20.125] dice before refine 0.0 and after 0.0045074052177369595, label 0: tensor(15, device='cuda:0'), label 1: tensor(12, device='cuda:0') +[22:01:20.479] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(17, device='cuda:0') +[22:01:23.479] dice before refine 0.0 and after 0.02812499925494194, label 0: tensor(14, device='cuda:0'), label 1: tensor(33, device='cuda:0') +[22:01:24.060] epoch: 1/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.02419630311090838 stich left and right side (total size): 1 +[22:01:24.060] - Val metrics mean dice: 0.23287467283681648 +[22:01:24.915] - Val metrics best mean dice: 0.23287467283681648 at epoch 1 +[22:01:53.717] epoch: 2/20, iter: 0/42: loss:3.3353: rank:-1 +[22:02:04.324] epoch: 2/20, iter: 1/42: loss:4.0682: rank:-1 +[22:02:16.697] epoch: 2/20, iter: 2/42: loss:3.1733: rank:-1 +[22:02:37.342] epoch: 2/20, iter: 3/42: loss:2.1544: rank:-1 +[22:02:54.529] epoch: 2/20, iter: 4/42: loss:3.344: rank:-1 +[22:03:07.179] epoch: 2/20, iter: 5/42: loss:3.0277: rank:-1 +[22:03:25.607] epoch: 2/20, iter: 6/42: loss:1.9549: rank:-1 +[22:03:45.844] epoch: 2/20, iter: 7/42: loss:1.7372: rank:-1 +[22:04:02.445] epoch: 2/20, iter: 8/42: loss:2.9768: rank:-1 +[22:04:23.143] epoch: 2/20, iter: 9/42: loss:3.9566: rank:-1 +[22:04:35.113] epoch: 2/20, iter: 10/42: loss:4.0184: rank:-1 +[22:04:46.897] epoch: 2/20, iter: 11/42: loss:3.3748: rank:-1 +[22:05:06.786] epoch: 2/20, iter: 12/42: loss:1.911: rank:-1 +[22:05:19.871] epoch: 2/20, iter: 13/42: loss:4.0467: rank:-1 +[22:05:31.704] epoch: 2/20, iter: 14/42: loss:3.971: rank:-1 +[22:05:56.109] epoch: 2/20, iter: 15/42: loss:3.827: rank:-1 +[22:06:05.363] epoch: 2/20, iter: 16/42: loss:4.246: rank:-1 +[22:06:26.801] epoch: 2/20, iter: 17/42: loss:3.6012: rank:-1 +[22:06:46.807] epoch: 2/20, iter: 18/42: loss:2.7122: rank:-1 +[22:06:59.101] epoch: 2/20, iter: 19/42: loss:4.0997: rank:-1 +[22:07:19.004] epoch: 2/20, iter: 20/42: loss:2.898: rank:-1 +[22:07:37.172] epoch: 2/20, iter: 21/42: loss:2.7943: rank:-1 +[22:08:00.393] epoch: 2/20, iter: 22/42: loss:4.4599: rank:-1 +[22:08:14.678] epoch: 2/20, iter: 23/42: loss:2.5199: rank:-1 +[22:08:28.006] epoch: 2/20, iter: 24/42: loss:3.1098: rank:-1 +[22:08:42.067] epoch: 2/20, iter: 25/42: loss:3.2056: rank:-1 +[22:09:00.618] epoch: 2/20, iter: 26/42: loss:2.5794: rank:-1 +[22:09:21.467] epoch: 2/20, iter: 27/42: loss:3.3894: rank:-1 +[22:09:31.165] epoch: 2/20, iter: 28/42: loss:3.3814: rank:-1 +[22:09:40.620] epoch: 2/20, iter: 29/42: loss:3.792: rank:-1 +[22:09:59.028] epoch: 2/20, iter: 30/42: loss:2.4286: rank:-1 +[22:10:17.427] epoch: 2/20, iter: 31/42: loss:2.0008: rank:-1 +[22:10:35.262] epoch: 2/20, iter: 32/42: loss:4.6954: rank:-1 +[22:10:50.315] epoch: 2/20, iter: 33/42: loss:1.6506: rank:-1 +[22:11:03.858] epoch: 2/20, iter: 34/42: loss:2.199: rank:-1 +[22:11:21.148] epoch: 2/20, iter: 35/42: loss:6.9445: rank:-1 +[22:11:32.928] epoch: 2/20, iter: 36/42: loss:3.4903: rank:-1 +[22:11:57.220] epoch: 2/20, iter: 37/42: loss:2.9281: rank:-1 +[22:12:17.701] epoch: 2/20, iter: 38/42: loss:3.001: rank:-1 +[22:12:43.073] epoch: 2/20, iter: 39/42: loss:4.3429: rank:-1 +[22:12:56.317] epoch: 2/20, iter: 40/42: loss:3.5807: rank:-1 +[22:13:09.124] epoch: 2/20, iter: 41/42: loss:2.6444: rank:-1 +[22:13:09.126] - Train metrics: 3.2755368 +[22:13:12.890] dice before refine 3.1503008358413354e-05 and after 0.033841270953416824, label 0: tensor(0, device='cuda:0'), label 1: tensor(216, device='cuda:0') +[22:13:17.892] dice before refine 0.0 and after 0.0484347902238369, label 0: tensor(155, device='cuda:0'), label 1: tensor(91, device='cuda:0') +[22:13:18.359] dice before refine 0.0001923949021147564 and after 0.043740276247262955, label 0: tensor(0, device='cuda:0'), label 1: tensor(359, device='cuda:0') +[22:13:26.807] dice before refine 0.0 and after 0.07508502900600433, label 0: tensor(298, device='cuda:0'), label 1: tensor(220, device='cuda:0') +[22:13:27.173] dice before refine 0.009334280155599117 and after 0.009146423079073429, label 0: tensor(0, device='cuda:0'), label 1: tensor(35, device='cuda:0') +[22:13:32.115] dice before refine 0.0058022961020469666 and after 0.006972453556954861, label 0: tensor(190, device='cuda:0'), label 1: tensor(14, device='cuda:0') +[22:13:32.536] dice before refine 0.007414613850414753 and after 0.02040254883468151, label 0: tensor(0, device='cuda:0'), label 1: tensor(172, device='cuda:0') +[22:13:40.866] dice before refine 0.0037759034894406796 and after 0.03914916515350342, label 0: tensor(510, device='cuda:0'), label 1: tensor(75, device='cuda:0') +[22:13:41.297] dice before refine 0.0 and after 0.0630694255232811, label 0: tensor(0, device='cuda:0'), label 1: tensor(344, device='cuda:0') +[22:13:47.515] dice before refine 0.0 and after 0.0992925614118576, label 0: tensor(259, device='cuda:0'), label 1: tensor(135, device='cuda:0') +[22:13:48.043] epoch: 2/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.026679503816095265 stich left and right side (total size): 1 +[22:13:48.564] dice before refine 0.010390070267021656 and after 0.02236800454556942, label 0: tensor(0, device='cuda:0'), label 1: tensor(111, device='cuda:0') +[22:13:56.186] dice before refine 0.015523969195783138 and after 0.06659604609012604, label 0: tensor(510, device='cuda:0'), label 1: tensor(117, device='cuda:0') +[22:13:56.562] dice before refine 0.04248129948973656 and after 0.04528103396296501, label 0: tensor(0, device='cuda:0'), label 1: tensor(101, device='cuda:0') +[22:14:03.832] dice before refine 0.0374932587146759 and after 0.056546323001384735, label 0: tensor(510, device='cuda:0'), label 1: tensor(137, device='cuda:0') +[22:14:04.227] dice before refine 0.013032879680395126 and after 0.025484157726168633, label 0: tensor(0, device='cuda:0'), label 1: tensor(143, device='cuda:0') +[22:14:11.587] dice before refine 0.01541608665138483 and after 0.05123034119606018, label 0: tensor(510, device='cuda:0'), label 1: tensor(97, device='cuda:0') +[22:14:11.955] dice before refine 0.04868682101368904 and after 0.052019309252500534, label 0: tensor(0, device='cuda:0'), label 1: tensor(91, device='cuda:0') +[22:14:19.032] dice before refine 0.049322132021188736 and after 0.06306429207324982, label 0: tensor(510, device='cuda:0'), label 1: tensor(48, device='cuda:0') +[22:14:20.291] epoch: 2/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.037154667248780075 stich left and right side (total size): 1 +[22:14:20.816] dice before refine 0.010122091509401798 and after 0.06382181495428085, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:14:28.197] dice before refine 0.20453490316867828 and after 0.44698676466941833, label 0: tensor(268, device='cuda:0'), label 1: tensor(394, device='cuda:0') +[22:14:28.760] dice before refine 0.6321223974227905 and after 0.6787323355674744, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:14:39.745] dice before refine 0.8369540572166443 and after 0.9489872455596924, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +[22:14:40.419] dice before refine 0.46217644214630127 and after 0.4662023186683655, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:14:48.756] dice before refine 0.5720407366752625 and after 0.6551771759986877, label 0: tensor(73, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:14:49.594] dice before refine 0.5319765210151672 and after 0.5732249021530151, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:14:59.897] dice before refine 0.6202824115753174 and after 0.7049665451049805, label 0: tensor(105, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:15:00.352] dice before refine 0.11988867819309235 and after 0.1778898537158966, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:15:08.310] dice before refine 0.25622090697288513 and after 0.5411666631698608, label 0: tensor(235, device='cuda:0'), label 1: tensor(446, device='cuda:0') +[22:15:08.888] dice before refine 0.2321084439754486 and after 0.3102399706840515, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:15:19.890] dice before refine 0.7753812074661255 and after 0.9174346923828125, label 0: tensor(535, device='cuda:0'), label 1: tensor(509, device='cuda:0') +[22:15:20.664] dice before refine 0.5771431922912598 and after 0.5841461420059204, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:15:30.290] dice before refine 0.6050511598587036 and after 0.6811520457267761, label 0: tensor(132, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:15:31.138] dice before refine 0.4952365756034851 and after 0.5178167819976807, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:15:43.256] dice before refine 0.5588208436965942 and after 0.6268035173416138, label 0: tensor(312, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:15:43.928] epoch: 2/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.6380511576479132 stich left and right side (total size): 1 +[22:15:44.449] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[22:15:47.301] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +[22:15:47.676] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[22:15:50.485] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +[22:15:50.870] epoch: 2/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +[22:15:51.339] dice before refine 0.0 and after 0.024796759709715843, label 0: tensor(0, device='cuda:0'), label 1: tensor(220, device='cuda:0') +[22:15:55.262] dice before refine 0.0 and after 0.05369800701737404, label 0: tensor(60, device='cuda:0'), label 1: tensor(53, device='cuda:0') +[22:15:55.682] dice before refine 0.0005747952382080257 and after 0.11613383144140244, label 0: tensor(0, device='cuda:0'), label 1: tensor(455, device='cuda:0') +[22:16:01.000] dice before refine 0.018534192815423012 and after 0.1804484874010086, label 0: tensor(144, device='cuda:0'), label 1: tensor(94, device='cuda:0') +[22:16:01.393] dice before refine 0.0015665212413296103 and after 0.26394644379615784, label 0: tensor(0, device='cuda:0'), label 1: tensor(238, device='cuda:0') +[22:16:05.231] dice before refine 0.007303218822926283 and after 0.39993584156036377, label 0: tensor(81, device='cuda:0'), label 1: tensor(32, device='cuda:0') +[22:16:05.644] dice before refine 0.01080042403191328 and after 0.15765823423862457, label 0: tensor(0, device='cuda:0'), label 1: tensor(482, device='cuda:0') +[22:16:11.397] dice before refine 0.05738084390759468 and after 0.22590190172195435, label 0: tensor(232, device='cuda:0'), label 1: tensor(68, device='cuda:0') +[22:16:11.779] dice before refine 0.0 and after 0.09258478879928589, label 0: tensor(0, device='cuda:0'), label 1: tensor(302, device='cuda:0') +[22:16:16.295] dice before refine 0.0007716049440205097 and after 0.06527947634458542, label 0: tensor(119, device='cuda:0'), label 1: tensor(60, device='cuda:0') +[22:16:16.722] dice before refine 0.4560388922691345 and after 0.7167572975158691, label 0: tensor(0, device='cuda:0'), label 1: tensor(532, device='cuda:0') +[22:16:23.814] dice before refine 0.7811495065689087 and after 0.8837652802467346, label 0: tensor(298, device='cuda:0'), label 1: tensor(87, device='cuda:0') +[22:16:24.195] dice before refine 0.01868230104446411 and after 0.2284727841615677, label 0: tensor(0, device='cuda:0'), label 1: tensor(244, device='cuda:0') +[22:16:28.530] dice before refine 0.09650831669569016 and after 0.3231370449066162, label 0: tensor(33, device='cuda:0'), label 1: tensor(32, device='cuda:0') +[22:16:28.954] dice before refine 0.4252600371837616 and after 0.510728120803833, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:16:36.023] dice before refine 0.27908843755722046 and after 0.2996385395526886, label 0: tensor(291, device='cuda:0'), label 1: tensor(110, device='cuda:0') +[22:16:36.765] epoch: 2/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.205108950083906 stich left and right side (total size): 1 +[22:16:37.270] dice before refine 0.0 and after 0.00927018653601408, label 0: tensor(0, device='cuda:0'), label 1: tensor(219, device='cuda:0') +[22:16:41.348] dice before refine 0.0 and after 0.018768956884741783, label 0: tensor(120, device='cuda:0'), label 1: tensor(12, device='cuda:0') +[22:16:41.764] dice before refine 0.06095890328288078 and after 0.2043064534664154, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:16:49.492] dice before refine 0.18295033276081085 and after 0.2912733256816864, label 0: tensor(510, device='cuda:0'), label 1: tensor(35, device='cuda:0') +[22:16:49.933] dice before refine 0.0 and after 0.005453653633594513, label 0: tensor(0, device='cuda:0'), label 1: tensor(124, device='cuda:0') +[22:16:53.666] dice before refine 0.0 and after 0.03466379642486572, label 0: tensor(39, device='cuda:0'), label 1: tensor(51, device='cuda:0') +[22:16:54.141] dice before refine 0.4558165669441223 and after 0.4696090519428253, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:17:03.543] dice before refine 0.5175058841705322 and after 0.5961238145828247, label 0: tensor(510, device='cuda:0'), label 1: tensor(84, device='cuda:0') +[22:17:04.426] epoch: 2/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.23588638278571042 stich left and right side (total size): 1 +[22:17:04.851] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(52, device='cuda:0') +[22:17:08.247] dice before refine 0.0 and after 0.016617730259895325, label 0: tensor(39, device='cuda:0'), label 1: tensor(16, device='cuda:0') +[22:17:08.611] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(37, device='cuda:0') +[22:17:11.893] dice before refine 0.0 and after 0.012837143614888191, label 0: tensor(38, device='cuda:0'), label 1: tensor(20, device='cuda:0') +[22:17:12.261] dice before refine 6.225486868061125e-05 and after 0.0073328446596860886, label 0: tensor(0, device='cuda:0'), label 1: tensor(95, device='cuda:0') +[22:17:19.334] dice before refine 5.42578891327139e-05 and after 0.05436542630195618, label 0: tensor(510, device='cuda:0'), label 1: tensor(15, device='cuda:0') +[22:17:19.703] dice before refine 0.0 and after 0.0014380132779479027, label 0: tensor(0, device='cuda:0'), label 1: tensor(116, device='cuda:0') +[22:17:24.611] dice before refine 0.0 and after 0.03527260944247246, label 0: tensor(92, device='cuda:0'), label 1: tensor(34, device='cuda:0') +[22:17:24.978] dice before refine 0.0 and after 0.03368375822901726, label 0: tensor(0, device='cuda:0'), label 1: tensor(133, device='cuda:0') +[22:17:28.805] dice before refine 0.0 and after 0.026054704561829567, label 0: tensor(75, device='cuda:0'), label 1: tensor(30, device='cuda:0') +[22:17:29.182] dice before refine 0.0 and after 0.02026386372745037, label 0: tensor(0, device='cuda:0'), label 1: tensor(180, device='cuda:0') +[22:17:33.533] dice before refine 0.0 and after 0.03106505796313286, label 0: tensor(76, device='cuda:0'), label 1: tensor(43, device='cuda:0') +[22:17:33.907] dice before refine 0.0009629062260501087 and after 0.026749778538942337, label 0: tensor(0, device='cuda:0'), label 1: tensor(104, device='cuda:0') +[22:17:40.667] dice before refine 0.002359693869948387 and after 0.12393325567245483, label 0: tensor(510, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[22:17:41.067] dice before refine 0.0 and after 0.007800539489835501, label 0: tensor(0, device='cuda:0'), label 1: tensor(107, device='cuda:0') +[22:17:48.413] dice before refine 0.0 and after 0.14352178573608398, label 0: tensor(510, device='cuda:0'), label 1: tensor(25, device='cuda:0') +[22:17:49.065] epoch: 2/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.0370010509875349 stich left and right side (total size): 1 +[22:17:49.545] dice before refine 0.060813892632722855 and after 0.14110177755355835, label 0: tensor(0, device='cuda:0'), label 1: tensor(514, device='cuda:0') +[22:17:57.543] dice before refine 0.10431903600692749 and after 0.22657513618469238, label 0: tensor(509, device='cuda:0'), label 1: tensor(61, device='cuda:0') +[22:17:57.971] dice before refine 0.07748982310295105 and after 0.14767178893089294, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:18:06.011] dice before refine 0.0924883782863617 and after 0.1775587648153305, label 0: tensor(510, device='cuda:0'), label 1: tensor(55, device='cuda:0') +[22:18:06.436] dice before refine 0.014969874173402786 and after 0.1621638834476471, label 0: tensor(0, device='cuda:0'), label 1: tensor(403, device='cuda:0') +[22:18:14.549] dice before refine 0.1214369609951973 and after 0.38033515214920044, label 0: tensor(510, device='cuda:0'), label 1: tensor(90, device='cuda:0') +[22:18:14.968] dice before refine 0.013700034469366074 and after 0.03921642154455185, label 0: tensor(0, device='cuda:0'), label 1: tensor(342, device='cuda:0') +[22:18:23.693] dice before refine 0.062162257730960846 and after 0.2373483031988144, label 0: tensor(510, device='cuda:0'), label 1: tensor(91, device='cuda:0') +[22:18:24.229] dice before refine 0.5551888346672058 and after 0.5351864695549011, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:18:35.707] dice before refine 0.6054762601852417 and after 0.7407770156860352, label 0: tensor(509, device='cuda:0'), label 1: tensor(360, device='cuda:0') +[22:18:36.255] dice before refine 0.5081302523612976 and after 0.5360738039016724, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:18:47.355] dice before refine 0.5581827759742737 and after 0.7424253821372986, label 0: tensor(509, device='cuda:0'), label 1: tensor(318, device='cuda:0') +[22:18:47.877] dice before refine 0.27989888191223145 and after 0.30860063433647156, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:18:59.129] dice before refine 0.37595173716545105 and after 0.5316106081008911, label 0: tensor(509, device='cuda:0'), label 1: tensor(219, device='cuda:0') +[22:18:59.651] dice before refine 0.25804123282432556 and after 0.29298144578933716, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:19:11.027] dice before refine 0.3635171353816986 and after 0.5601929426193237, label 0: tensor(510, device='cuda:0'), label 1: tensor(296, device='cuda:0') +[22:19:11.599] epoch: 2/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.31358903781934216 stich left and right side (total size): 1 +[22:19:12.104] dice before refine 0.3741581439971924 and after 0.45207956433296204, label 0: tensor(0, device='cuda:0'), label 1: tensor(136, device='cuda:0') +[22:19:17.242] dice before refine 0.4802331030368805 and after 0.630713939666748, label 0: tensor(223, device='cuda:0'), label 1: tensor(28, device='cuda:0') +[22:19:17.621] dice before refine 0.47467106580734253 and after 0.48531100153923035, label 0: tensor(0, device='cuda:0'), label 1: tensor(118, device='cuda:0') +[22:19:22.674] dice before refine 0.170624241232872 and after 0.18253658711910248, label 0: tensor(158, device='cuda:0'), label 1: tensor(45, device='cuda:0') +[22:19:23.053] dice before refine 0.36868003010749817 and after 0.4274022877216339, label 0: tensor(0, device='cuda:0'), label 1: tensor(144, device='cuda:0') +[22:19:28.610] dice before refine 0.2939428687095642 and after 0.3569355905056, label 0: tensor(180, device='cuda:0'), label 1: tensor(27, device='cuda:0') +[22:19:28.993] dice before refine 0.4227124750614166 and after 0.4929131269454956, label 0: tensor(0, device='cuda:0'), label 1: tensor(153, device='cuda:0') +[22:19:34.098] dice before refine 0.4992290437221527 and after 0.7246479988098145, label 0: tensor(183, device='cuda:0'), label 1: tensor(36, device='cuda:0') +[22:19:34.529] epoch: 2/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.3178921775384383 stich left and right side (total size): 1 +[22:19:35.064] dice before refine 6.114711868576705e-05 and after 0.0036419543903321028, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:19:45.799] dice before refine 0.014792140573263168 and after 0.21832682192325592, label 0: tensor(509, device='cuda:0'), label 1: tensor(501, device='cuda:0') +[22:19:46.326] dice before refine 0.01810012385249138 and after 0.01916050724685192, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:19:57.234] dice before refine 0.07785524427890778 and after 0.300552099943161, label 0: tensor(518, device='cuda:0'), label 1: tensor(500, device='cuda:0') +[22:19:57.698] dice before refine 0.47483202815055847 and after 0.48237866163253784, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:20:06.647] dice before refine 0.5920822620391846 and after 0.6959254145622253, label 0: tensor(510, device='cuda:0'), label 1: tensor(97, device='cuda:0') +[22:20:07.125] dice before refine 0.5487136840820312 and after 0.5578064322471619, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:20:16.474] dice before refine 0.656020998954773 and after 0.7434359788894653, label 0: tensor(510, device='cuda:0'), label 1: tensor(103, device='cuda:0') +[22:20:17.057] dice before refine 0.571658730506897 and after 0.5567623972892761, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:20:28.749] dice before refine 0.6457977890968323 and after 0.7575938701629639, label 0: tensor(507, device='cuda:0'), label 1: tensor(503, device='cuda:0') +[22:20:29.363] dice before refine 0.6933335065841675 and after 0.6794242262840271, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:20:41.014] dice before refine 0.7493940591812134 and after 0.8276007771492004, label 0: tensor(506, device='cuda:0'), label 1: tensor(504, device='cuda:0') +[22:20:41.464] dice before refine 0.10201063752174377 and after 0.15295027196407318, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:20:50.655] dice before refine 0.1308002918958664 and after 0.25553661584854126, label 0: tensor(510, device='cuda:0'), label 1: tensor(111, device='cuda:0') +[22:20:51.109] dice before refine 0.09723774343729019 and after 0.24833081662654877, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:20:59.477] dice before refine 0.326241135597229 and after 0.569000780582428, label 0: tensor(510, device='cuda:0'), label 1: tensor(79, device='cuda:0') +[22:21:00.019] epoch: 2/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.5186592557213523 stich left and right side (total size): 1 +[22:21:00.558] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(19, device='cuda:0') +[22:21:03.611] dice before refine 0.0 and after 0.004777379799634218, label 0: tensor(18, device='cuda:0'), label 1: tensor(22, device='cuda:0') +[22:21:03.966] dice before refine 9.883864549919963e-05 and after 0.003683241317048669, label 0: tensor(0, device='cuda:0'), label 1: tensor(21, device='cuda:0') +[22:21:07.090] dice before refine 0.0 and after 0.005615519359707832, label 0: tensor(22, device='cuda:0'), label 1: tensor(4, device='cuda:0') +[22:21:07.587] epoch: 2/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.005455594636838545 stich left and right side (total size): 1 +[22:21:07.588] - Val metrics mean dice: 0.21231616166235553 +[22:21:08.206] - Val metrics best mean dice: 0.23287467283681648 at epoch 1 +[22:21:38.469] epoch: 3/20, iter: 0/42: loss:2.7549: rank:-1 +[22:21:50.601] epoch: 3/20, iter: 1/42: loss:3.4059: rank:-1 +[22:22:14.046] epoch: 3/20, iter: 2/42: loss:2.1957: rank:-1 +[22:22:29.704] epoch: 3/20, iter: 3/42: loss:4.1521: rank:-1 +[22:22:52.663] epoch: 3/20, iter: 4/42: loss:2.2941: rank:-1 +[22:23:10.912] epoch: 3/20, iter: 5/42: loss:2.0127: rank:-1 +[22:23:25.004] epoch: 3/20, iter: 6/42: loss:3.797: rank:-1 +[22:23:46.448] epoch: 3/20, iter: 7/42: loss:3.6349: rank:-1 +[22:23:55.793] epoch: 3/20, iter: 8/42: loss:4.2641: rank:-1 +[22:24:10.757] epoch: 3/20, iter: 9/42: loss:4.0026: rank:-1 +[22:24:25.000] epoch: 3/20, iter: 10/42: loss:2.3595: rank:-1 +[22:24:36.282] epoch: 3/20, iter: 11/42: loss:3.114: rank:-1 +[22:24:52.466] epoch: 3/20, iter: 12/42: loss:4.9899: rank:-1 +[22:25:07.549] epoch: 3/20, iter: 13/42: loss:2.7491: rank:-1 +[22:25:26.843] epoch: 3/20, iter: 14/42: loss:2.4329: rank:-1 +[22:25:37.868] epoch: 3/20, iter: 15/42: loss:3.7472: rank:-1 +[22:25:57.319] epoch: 3/20, iter: 16/42: loss:3.96: rank:-1 +[22:26:18.640] epoch: 3/20, iter: 17/42: loss:3.657: rank:-1 +[22:26:30.695] epoch: 3/20, iter: 18/42: loss:3.999: rank:-1 +[22:26:46.342] epoch: 3/20, iter: 19/42: loss:1.2334: rank:-1 +[22:26:57.844] epoch: 3/20, iter: 20/42: loss:2.5019: rank:-1 +[22:27:17.934] epoch: 3/20, iter: 21/42: loss:4.5845: rank:-1 +[22:27:35.537] epoch: 3/20, iter: 22/42: loss:2.4453: rank:-1 +[22:28:02.240] epoch: 3/20, iter: 23/42: loss:4.8464: rank:-1 +[22:28:19.756] epoch: 3/20, iter: 24/42: loss:3.8888: rank:-1 +[22:28:35.325] epoch: 3/20, iter: 25/42: loss:1.9328: rank:-1 +[22:28:45.019] epoch: 3/20, iter: 26/42: loss:3.1812: rank:-1 +[22:28:57.066] epoch: 3/20, iter: 27/42: loss:3.2415: rank:-1 +[22:29:18.581] epoch: 3/20, iter: 28/42: loss:2.4812: rank:-1 +[22:29:30.861] epoch: 3/20, iter: 29/42: loss:3.7755: rank:-1 +[22:29:46.163] epoch: 3/20, iter: 30/42: loss:2.0269: rank:-1 +[22:30:04.172] epoch: 3/20, iter: 31/42: loss:3.2159: rank:-1 +[22:30:24.451] epoch: 3/20, iter: 32/42: loss:1.554: rank:-1 +[22:30:42.013] epoch: 3/20, iter: 33/42: loss:1.8738: rank:-1 +[22:30:52.615] epoch: 3/20, iter: 34/42: loss:3.1986: rank:-1 +[22:31:13.568] epoch: 3/20, iter: 35/42: loss:2.5829: rank:-1 +[22:31:34.950] epoch: 3/20, iter: 36/42: loss:1.6166: rank:-1 +[22:31:50.063] epoch: 3/20, iter: 37/42: loss:3.0735: rank:-1 +[22:32:11.650] epoch: 3/20, iter: 38/42: loss:1.7064: rank:-1 +[22:32:28.552] epoch: 3/20, iter: 39/42: loss:3.5061: rank:-1 +[22:32:37.756] epoch: 3/20, iter: 40/42: loss:4.5375: rank:-1 +[22:32:46.666] epoch: 3/20, iter: 41/42: loss:0.9648: rank:-1 +[22:32:46.667] - Train metrics: 3.0355256 +[22:32:50.411] dice before refine 0.05067344754934311 and after 0.1578492373228073, label 0: tensor(0, device='cuda:0'), label 1: tensor(190, device='cuda:0') +[22:32:55.900] dice before refine 0.03471052274107933 and after 0.16276031732559204, label 0: tensor(195, device='cuda:0'), label 1: tensor(67, device='cuda:0') +[22:32:56.367] dice before refine 0.010606758296489716 and after 0.16615717113018036, label 0: tensor(0, device='cuda:0'), label 1: tensor(381, device='cuda:0') +[22:33:04.442] dice before refine 0.0012828964972868562 and after 0.1539975255727768, label 0: tensor(328, device='cuda:0'), label 1: tensor(177, device='cuda:0') +[22:33:04.806] dice before refine 0.012280667200684547 and after 0.01500516664236784, label 0: tensor(0, device='cuda:0'), label 1: tensor(29, device='cuda:0') +[22:33:08.206] dice before refine 0.008061837404966354 and after 0.015686459839344025, label 0: tensor(48, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[22:33:08.625] dice before refine 0.03355717286467552 and after 0.07158195972442627, label 0: tensor(0, device='cuda:0'), label 1: tensor(167, device='cuda:0') +[22:33:16.452] dice before refine 0.04201629385352135 and after 0.14619684219360352, label 0: tensor(510, device='cuda:0'), label 1: tensor(44, device='cuda:0') +[22:33:16.872] dice before refine 0.0006339412066154182 and after 0.14574766159057617, label 0: tensor(0, device='cuda:0'), label 1: tensor(297, device='cuda:0') +[22:33:23.804] dice before refine 0.004437049385160208 and after 0.1395905464887619, label 0: tensor(294, device='cuda:0'), label 1: tensor(122, device='cuda:0') +[22:33:24.360] epoch: 3/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.05311215499585325 stich left and right side (total size): 1 +[22:33:24.884] dice before refine 0.007550977170467377 and after 0.021138180047273636, label 0: tensor(0, device='cuda:0'), label 1: tensor(126, device='cuda:0') +[22:33:32.511] dice before refine 0.010173802264034748 and after 0.09325601160526276, label 0: tensor(510, device='cuda:0'), label 1: tensor(54, device='cuda:0') +[22:33:32.880] dice before refine 0.056770388036966324 and after 0.08104941993951797, label 0: tensor(0, device='cuda:0'), label 1: tensor(111, device='cuda:0') +[22:33:40.031] dice before refine 0.06306946277618408 and after 0.1191680058836937, label 0: tensor(510, device='cuda:0'), label 1: tensor(141, device='cuda:0') +[22:33:40.429] dice before refine 0.007791868876665831 and after 0.018578780815005302, label 0: tensor(0, device='cuda:0'), label 1: tensor(126, device='cuda:0') +[22:33:47.598] dice before refine 0.002867857925593853 and after 0.08650657534599304, label 0: tensor(381, device='cuda:0'), label 1: tensor(69, device='cuda:0') +[22:33:47.968] dice before refine 0.053174883127212524 and after 0.07968337833881378, label 0: tensor(0, device='cuda:0'), label 1: tensor(80, device='cuda:0') +[22:33:54.233] dice before refine 0.06565967202186584 and after 0.1750132143497467, label 0: tensor(456, device='cuda:0'), label 1: tensor(34, device='cuda:0') +[22:33:55.491] epoch: 3/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.07645987346768379 stich left and right side (total size): 1 +[22:33:56.033] dice before refine 0.06064842641353607 and after 0.28620871901512146, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:34:03.604] dice before refine 0.7546601295471191 and after 0.949373722076416, label 0: tensor(353, device='cuda:0'), label 1: tensor(149, device='cuda:0') +[22:34:04.166] dice before refine 0.5276724100112915 and after 0.5466203093528748, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:34:14.404] dice before refine 0.8562904596328735 and after 0.9476257562637329, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +[22:34:15.086] dice before refine 0.29165345430374146 and after 0.25839507579803467, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:34:24.136] dice before refine 0.5351606011390686 and after 0.645961344242096, label 0: tensor(118, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:34:24.979] dice before refine 0.30341649055480957 and after 0.2730471193790436, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:34:35.731] dice before refine 0.567703127861023 and after 0.6045031547546387, label 0: tensor(87, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:34:36.210] dice before refine 0.1818697303533554 and after 0.347842812538147, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:34:44.881] dice before refine 0.7808141112327576 and after 0.9307876825332642, label 0: tensor(499, device='cuda:0'), label 1: tensor(158, device='cuda:0') +[22:34:45.459] dice before refine 0.4796810448169708 and after 0.4833226799964905, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:34:55.910] dice before refine 0.8678694367408752 and after 0.9593498706817627, label 0: tensor(506, device='cuda:0'), label 1: tensor(421, device='cuda:0') +[22:34:56.696] dice before refine 0.5164575576782227 and after 0.4660623371601105, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:35:06.738] dice before refine 0.6203778982162476 and after 0.679337203502655, label 0: tensor(99, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:35:07.565] dice before refine 0.43143802881240845 and after 0.39428919553756714, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:35:19.014] dice before refine 0.5126146078109741 and after 0.5690013766288757, label 0: tensor(239, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:35:19.714] epoch: 3/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.5905080410567197 stich left and right side (total size): 1 +[22:35:20.228] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[22:35:23.083] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +[22:35:23.457] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[22:35:26.329] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +[22:35:26.698] epoch: 3/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +[22:35:27.151] dice before refine 0.0 and after 0.15507134795188904, label 0: tensor(0, device='cuda:0'), label 1: tensor(132, device='cuda:0') +[22:35:30.925] dice before refine 0.0 and after 0.09495414793491364, label 0: tensor(83, device='cuda:0'), label 1: tensor(43, device='cuda:0') +[22:35:31.345] dice before refine 0.012006120756268501 and after 0.3941138982772827, label 0: tensor(0, device='cuda:0'), label 1: tensor(505, device='cuda:0') +[22:35:37.313] dice before refine 0.11014401167631149 and after 0.3102310299873352, label 0: tensor(184, device='cuda:0'), label 1: tensor(85, device='cuda:0') +[22:35:37.686] dice before refine 0.0010143702384084463 and after 0.7421820759773254, label 0: tensor(0, device='cuda:0'), label 1: tensor(184, device='cuda:0') +[22:35:41.441] dice before refine 0.03514480963349342 and after 0.8435592651367188, label 0: tensor(37, device='cuda:0'), label 1: tensor(26, device='cuda:0') +[22:35:41.853] dice before refine 0.03402352333068848 and after 0.5477310419082642, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:35:47.600] dice before refine 0.5789695978164673 and after 0.874961256980896, label 0: tensor(214, device='cuda:0'), label 1: tensor(70, device='cuda:0') +[22:35:47.982] dice before refine 0.11451397836208344 and after 0.6995773911476135, label 0: tensor(0, device='cuda:0'), label 1: tensor(312, device='cuda:0') +[22:35:52.640] dice before refine 0.674291729927063 and after 0.8716672658920288, label 0: tensor(94, device='cuda:0'), label 1: tensor(58, device='cuda:0') +[22:35:53.062] dice before refine 0.7278613448143005 and after 0.7951739430427551, label 0: tensor(0, device='cuda:0'), label 1: tensor(532, device='cuda:0') +[22:36:00.191] dice before refine 0.6618964076042175 and after 0.792155385017395, label 0: tensor(521, device='cuda:0'), label 1: tensor(61, device='cuda:0') +[22:36:00.575] dice before refine 0.05287254601716995 and after 0.43263712525367737, label 0: tensor(0, device='cuda:0'), label 1: tensor(316, device='cuda:0') +[22:36:04.883] dice before refine 0.5507907867431641 and after 0.8413372039794922, label 0: tensor(68, device='cuda:0'), label 1: tensor(40, device='cuda:0') +[22:36:05.307] dice before refine 0.4052061140537262 and after 0.6327241659164429, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:36:12.433] dice before refine 0.6937722563743591 and after 0.8121968507766724, label 0: tensor(510, device='cuda:0'), label 1: tensor(63, device='cuda:0') +[22:36:13.160] epoch: 3/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.4319716448133642 stich left and right side (total size): 1 +[22:36:13.663] dice before refine 0.0 and after 0.017307378351688385, label 0: tensor(0, device='cuda:0'), label 1: tensor(118, device='cuda:0') +[22:36:17.705] dice before refine 0.0 and after 0.046133484691381454, label 0: tensor(55, device='cuda:0'), label 1: tensor(8, device='cuda:0') +[22:36:18.121] dice before refine 0.02652907557785511 and after 0.19433479011058807, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:36:25.868] dice before refine 0.14439664781093597 and after 0.2907826602458954, label 0: tensor(510, device='cuda:0'), label 1: tensor(23, device='cuda:0') +[22:36:26.330] dice before refine 0.0 and after 0.07886864244937897, label 0: tensor(0, device='cuda:0'), label 1: tensor(136, device='cuda:0') +[22:36:31.034] dice before refine 0.0 and after 0.08464384824037552, label 0: tensor(88, device='cuda:0'), label 1: tensor(28, device='cuda:0') +[22:36:31.513] dice before refine 0.469851553440094 and after 0.545438289642334, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:36:40.702] dice before refine 0.6842795014381409 and after 0.8032083511352539, label 0: tensor(510, device='cuda:0'), label 1: tensor(48, device='cuda:0') +[22:36:41.675] epoch: 3/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.3818644041364843 stich left and right side (total size): 1 +[22:36:42.101] dice before refine 0.0 and after 0.009668323211371899, label 0: tensor(0, device='cuda:0'), label 1: tensor(47, device='cuda:0') +[22:36:48.112] dice before refine 0.0 and after 0.04008389636874199, label 0: tensor(510, device='cuda:0'), label 1: tensor(6, device='cuda:0') +[22:36:48.475] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(39, device='cuda:0') +[22:36:52.226] dice before refine 0.0 and after 0.0729752779006958, label 0: tensor(118, device='cuda:0'), label 1: tensor(14, device='cuda:0') +[22:36:52.608] dice before refine 0.0 and after 0.045530952513217926, label 0: tensor(0, device='cuda:0'), label 1: tensor(149, device='cuda:0') +[22:36:59.562] dice before refine 4.1281375160906464e-05 and after 0.04712151363492012, label 0: tensor(510, device='cuda:0'), label 1: tensor(7, device='cuda:0') +[22:36:59.936] dice before refine 0.0012894906103610992 and after 0.1329449713230133, label 0: tensor(0, device='cuda:0'), label 1: tensor(139, device='cuda:0') +[22:37:04.382] dice before refine 0.0 and after 0.2162705957889557, label 0: tensor(167, device='cuda:0'), label 1: tensor(27, device='cuda:0') +[22:37:04.765] dice before refine 0.0 and after 0.36143916845321655, label 0: tensor(0, device='cuda:0'), label 1: tensor(167, device='cuda:0') +[22:37:10.956] dice before refine 0.007362274918705225 and after 0.27139317989349365, label 0: tensor(380, device='cuda:0'), label 1: tensor(25, device='cuda:0') +[22:37:11.342] dice before refine 0.0 and after 0.20826952159404755, label 0: tensor(0, device='cuda:0'), label 1: tensor(164, device='cuda:0') +[22:37:15.991] dice before refine 0.0 and after 0.7484720349311829, label 0: tensor(98, device='cuda:0'), label 1: tensor(39, device='cuda:0') +[22:37:16.377] dice before refine 0.0030933632515370846 and after 0.09329446405172348, label 0: tensor(0, device='cuda:0'), label 1: tensor(151, device='cuda:0') +[22:37:23.000] dice before refine 0.0021450319327414036 and after 0.15668052434921265, label 0: tensor(510, device='cuda:0'), label 1: tensor(13, device='cuda:0') +[22:37:23.382] dice before refine 0.0 and after 0.11327097564935684, label 0: tensor(0, device='cuda:0'), label 1: tensor(116, device='cuda:0') +[22:37:30.077] dice before refine 0.009234828874468803 and after 0.20686741173267365, label 0: tensor(510, device='cuda:0'), label 1: tensor(41, device='cuda:0') +[22:37:30.748] epoch: 3/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.12484844062816013 stich left and right side (total size): 1 +[22:37:31.234] dice before refine 0.00021965349151287228 and after 0.2957631051540375, label 0: tensor(0, device='cuda:0'), label 1: tensor(539, device='cuda:0') +[22:37:39.199] dice before refine 0.099249467253685 and after 0.3992084562778473, label 0: tensor(510, device='cuda:0'), label 1: tensor(87, device='cuda:0') +[22:37:39.631] dice before refine 0.0031411016825586557 and after 0.30521830916404724, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:37:47.630] dice before refine 0.12099141627550125 and after 0.404572457075119, label 0: tensor(510, device='cuda:0'), label 1: tensor(84, device='cuda:0') +[22:37:48.057] dice before refine 0.0006071310490369797 and after 0.33018946647644043, label 0: tensor(0, device='cuda:0'), label 1: tensor(505, device='cuda:0') +[22:37:56.186] dice before refine 0.034861642867326736 and after 0.4235052466392517, label 0: tensor(510, device='cuda:0'), label 1: tensor(112, device='cuda:0') +[22:37:56.610] dice before refine 0.0017184590687975287 and after 0.24407850205898285, label 0: tensor(0, device='cuda:0'), label 1: tensor(390, device='cuda:0') +[22:38:04.507] dice before refine 0.12240096926689148 and after 0.4508543312549591, label 0: tensor(352, device='cuda:0'), label 1: tensor(102, device='cuda:0') +[22:38:05.044] dice before refine 0.6085328459739685 and after 0.6174039840698242, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:38:16.077] dice before refine 0.6309638619422913 and after 0.7618075013160706, label 0: tensor(510, device='cuda:0'), label 1: tensor(240, device='cuda:0') +[22:38:16.617] dice before refine 0.5142660140991211 and after 0.5647352337837219, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:38:27.409] dice before refine 0.5863524079322815 and after 0.7465102672576904, label 0: tensor(510, device='cuda:0'), label 1: tensor(180, device='cuda:0') +[22:38:27.934] dice before refine 0.2742357552051544 and after 0.33648601174354553, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:38:38.850] dice before refine 0.49474629759788513 and after 0.6253957748413086, label 0: tensor(510, device='cuda:0'), label 1: tensor(221, device='cuda:0') +[22:38:39.388] dice before refine 0.19367653131484985 and after 0.32162392139434814, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:38:50.465] dice before refine 0.4881821572780609 and after 0.6586000323295593, label 0: tensor(510, device='cuda:0'), label 1: tensor(175, device='cuda:0') +[22:38:51.060] epoch: 3/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.4854405874555761 stich left and right side (total size): 1 +[22:38:51.571] dice before refine 0.29820552468299866 and after 0.4072113037109375, label 0: tensor(0, device='cuda:0'), label 1: tensor(157, device='cuda:0') +[22:38:57.294] dice before refine 0.2232292890548706 and after 0.3488451838493347, label 0: tensor(310, device='cuda:0'), label 1: tensor(32, device='cuda:0') +[22:38:57.679] dice before refine 0.44119641184806824 and after 0.5747800469398499, label 0: tensor(0, device='cuda:0'), label 1: tensor(153, device='cuda:0') +[22:39:03.109] dice before refine 0.30782267451286316 and after 0.4179980754852295, label 0: tensor(237, device='cuda:0'), label 1: tensor(37, device='cuda:0') +[22:39:03.491] dice before refine 0.23904633522033691 and after 0.29859352111816406, label 0: tensor(0, device='cuda:0'), label 1: tensor(109, device='cuda:0') +[22:39:08.629] dice before refine 0.1971784383058548 and after 0.25416338443756104, label 0: tensor(155, device='cuda:0'), label 1: tensor(33, device='cuda:0') +[22:39:09.012] dice before refine 0.35686251521110535 and after 0.46320033073425293, label 0: tensor(0, device='cuda:0'), label 1: tensor(136, device='cuda:0') +[22:39:14.263] dice before refine 0.22485756874084473 and after 0.27781063318252563, label 0: tensor(181, device='cuda:0'), label 1: tensor(54, device='cuda:0') +[22:39:14.783] epoch: 3/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.3022784373976968 stich left and right side (total size): 1 +[22:39:15.327] dice before refine 0.0 and after 0.051679693162441254, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:39:24.822] dice before refine 0.17740842700004578 and after 0.465680867433548, label 0: tensor(405, device='cuda:0'), label 1: tensor(345, device='cuda:0') +[22:39:25.326] dice before refine 0.00301856710575521 and after 0.01001514308154583, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:39:34.729] dice before refine 0.2976057827472687 and after 0.5744630098342896, label 0: tensor(544, device='cuda:0'), label 1: tensor(501, device='cuda:0') +[22:39:35.192] dice before refine 0.42739197611808777 and after 0.5047689080238342, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:39:43.639] dice before refine 0.7603546977043152 and after 0.888037383556366, label 0: tensor(509, device='cuda:0'), label 1: tensor(83, device='cuda:0') +[22:39:44.120] dice before refine 0.5498350262641907 and after 0.6204542517662048, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:39:52.589] dice before refine 0.7553741931915283 and after 0.8602385520935059, label 0: tensor(510, device='cuda:0'), label 1: tensor(76, device='cuda:0') +[22:39:53.167] dice before refine 0.6370977759361267 and after 0.6455574631690979, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:40:04.640] dice before refine 0.7788124680519104 and after 0.8585094213485718, label 0: tensor(507, device='cuda:0'), label 1: tensor(503, device='cuda:0') +[22:40:05.254] dice before refine 0.7221536040306091 and after 0.707622766494751, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:40:16.723] dice before refine 0.8178098201751709 and after 0.8921011090278625, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +[22:40:17.172] dice before refine 0.0660233199596405 and after 0.18686363101005554, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:40:25.972] dice before refine 0.17120730876922607 and after 0.32533812522888184, label 0: tensor(510, device='cuda:0'), label 1: tensor(80, device='cuda:0') +[22:40:26.405] dice before refine 0.04764118790626526 and after 0.23840652406215668, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:40:34.240] dice before refine 0.2615794539451599 and after 0.47250130772590637, label 0: tensor(510, device='cuda:0'), label 1: tensor(87, device='cuda:0') +[22:40:34.748] epoch: 3/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.6150377880443226 stich left and right side (total size): 1 +[22:40:35.277] dice before refine 0.0 and after 0.0049549550749361515, label 0: tensor(0, device='cuda:0'), label 1: tensor(33, device='cuda:0') +[22:40:38.317] dice before refine 0.0 and after 0.006134393159300089, label 0: tensor(57, device='cuda:0'), label 1: tensor(11, device='cuda:0') +[22:40:38.675] dice before refine 0.0 and after 0.00658209016546607, label 0: tensor(0, device='cuda:0'), label 1: tensor(26, device='cuda:0') +[22:40:41.803] dice before refine 0.0 and after 0.006317073944956064, label 0: tensor(27, device='cuda:0'), label 1: tensor(7, device='cuda:0') +[22:40:42.311] epoch: 3/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.005890298486602577 stich left and right side (total size): 1 +[22:40:42.312] - Val metrics mean dice: 0.2788556064074967 +[22:40:43.083] - Val metrics best mean dice: 0.2788556064074967 at epoch 3 +[22:41:04.292] epoch: 4/20, iter: 0/42: loss:3.1608: rank:-1 +[22:41:21.118] epoch: 4/20, iter: 1/42: loss:3.4804: rank:-1 +[22:41:33.908] epoch: 4/20, iter: 2/42: loss:3.3103: rank:-1 +[22:41:44.713] epoch: 4/20, iter: 3/42: loss:3.1117: rank:-1 +[22:42:05.697] epoch: 4/20, iter: 4/42: loss:2.2315: rank:-1 +[22:42:25.713] epoch: 4/20, iter: 5/42: loss:2.1745: rank:-1 +[22:42:35.074] epoch: 4/20, iter: 6/42: loss:4.3796: rank:-1 +[22:42:46.419] epoch: 4/20, iter: 7/42: loss:1.758: rank:-1 +[22:43:07.865] epoch: 4/20, iter: 8/42: loss:1.9747: rank:-1 +[22:43:30.451] epoch: 4/20, iter: 9/42: loss:4.1588: rank:-1 +[22:43:53.249] epoch: 4/20, iter: 10/42: loss:5.689: rank:-1 +[22:44:03.799] epoch: 4/20, iter: 11/42: loss:2.4941: rank:-1 +[22:44:23.797] epoch: 4/20, iter: 12/42: loss:4.0873: rank:-1 +[22:44:46.900] epoch: 4/20, iter: 13/42: loss:3.2689: rank:-1 +[22:45:07.842] epoch: 4/20, iter: 14/42: loss:1.5618: rank:-1 +[22:45:18.241] epoch: 4/20, iter: 15/42: loss:2.3385: rank:-1 +[22:45:30.068] epoch: 4/20, iter: 16/42: loss:2.4282: rank:-1 +[22:45:49.574] epoch: 4/20, iter: 17/42: loss:1.6863: rank:-1 +[22:46:03.494] epoch: 4/20, iter: 18/42: loss:3.0849: rank:-1 +[22:46:14.322] epoch: 4/20, iter: 19/42: loss:2.6994: rank:-1 +[22:46:33.860] epoch: 4/20, iter: 20/42: loss:1.787: rank:-1 +[22:46:55.725] epoch: 4/20, iter: 21/42: loss:1.8188: rank:-1 +[22:47:19.956] epoch: 4/20, iter: 22/42: loss:4.5704: rank:-1 +[22:47:33.396] epoch: 4/20, iter: 23/42: loss:3.5471: rank:-1 +[22:47:57.076] epoch: 4/20, iter: 24/42: loss:4.2757: rank:-1 +[22:48:09.715] epoch: 4/20, iter: 25/42: loss:2.2935: rank:-1 +[22:48:21.314] epoch: 4/20, iter: 26/42: loss:2.2628: rank:-1 +[22:48:44.244] epoch: 4/20, iter: 27/42: loss:2.1958: rank:-1 +[22:49:05.893] epoch: 4/20, iter: 28/42: loss:1.8897: rank:-1 +[22:49:22.971] epoch: 4/20, iter: 29/42: loss:1.5163: rank:-1 +[22:49:32.707] epoch: 4/20, iter: 30/42: loss:2.4607: rank:-1 +[22:49:44.625] epoch: 4/20, iter: 31/42: loss:2.5995: rank:-1 +[22:49:58.992] epoch: 4/20, iter: 32/42: loss:2.7958: rank:-1 +[22:50:09.748] epoch: 4/20, iter: 33/42: loss:1.7693: rank:-1 +[22:50:32.269] epoch: 4/20, iter: 34/42: loss:2.9598: rank:-1 +[22:50:41.823] epoch: 4/20, iter: 35/42: loss:2.4863: rank:-1 +[22:50:54.200] epoch: 4/20, iter: 36/42: loss:2.4962: rank:-1 +[22:51:14.068] epoch: 4/20, iter: 37/42: loss:1.5843: rank:-1 +[22:51:29.812] epoch: 4/20, iter: 38/42: loss:1.9649: rank:-1 +[22:51:43.918] epoch: 4/20, iter: 39/42: loss:1.2162: rank:-1 +[22:51:52.883] epoch: 4/20, iter: 40/42: loss:2.4444: rank:-1 +[22:52:01.445] epoch: 4/20, iter: 41/42: loss:0.887: rank:-1 +[22:52:01.446] - Train metrics: 2.6404898 +[22:52:05.163] dice before refine 0.02011275291442871 and after 0.6841498613357544, label 0: tensor(0, device='cuda:0'), label 1: tensor(183, device='cuda:0') +[22:52:10.083] dice before refine 0.3841243386268616 and after 0.8783695101737976, label 0: tensor(179, device='cuda:0'), label 1: tensor(50, device='cuda:0') +[22:52:10.543] dice before refine 0.0 and after 0.6138349771499634, label 0: tensor(0, device='cuda:0'), label 1: tensor(378, device='cuda:0') +[22:52:17.944] dice before refine 0.4942072629928589 and after 0.8513262271881104, label 0: tensor(271, device='cuda:0'), label 1: tensor(153, device='cuda:0') +[22:52:18.320] dice before refine 0.06178956478834152 and after 0.16038751602172852, label 0: tensor(0, device='cuda:0'), label 1: tensor(36, device='cuda:0') +[22:52:21.620] dice before refine 0.3257790505886078 and after 0.8537858724594116, label 0: tensor(33, device='cuda:0'), label 1: tensor(16, device='cuda:0') +[22:52:22.037] dice before refine 0.05861889198422432 and after 0.2967887222766876, label 0: tensor(0, device='cuda:0'), label 1: tensor(196, device='cuda:0') +[22:52:28.419] dice before refine 0.07521367818117142 and after 0.31856539845466614, label 0: tensor(315, device='cuda:0'), label 1: tensor(84, device='cuda:0') +[22:52:28.837] dice before refine 0.0 and after 0.3089236319065094, label 0: tensor(0, device='cuda:0'), label 1: tensor(311, device='cuda:0') +[22:52:34.937] dice before refine 0.03714587911963463 and after 0.3763965964317322, label 0: tensor(256, device='cuda:0'), label 1: tensor(104, device='cuda:0') +[22:52:35.565] epoch: 4/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.2867402664639733 stich left and right side (total size): 1 +[22:52:36.086] dice before refine 0.0 and after 0.07209694385528564, label 0: tensor(0, device='cuda:0'), label 1: tensor(129, device='cuda:0') +[22:52:40.777] dice before refine 0.0 and after 0.293170690536499, label 0: tensor(80, device='cuda:0'), label 1: tensor(60, device='cuda:0') +[22:52:41.147] dice before refine 0.0007887057145126164 and after 0.2629859447479248, label 0: tensor(0, device='cuda:0'), label 1: tensor(106, device='cuda:0') +[22:52:45.751] dice before refine 0.0 and after 0.9253455996513367, label 0: tensor(134, device='cuda:0'), label 1: tensor(54, device='cuda:0') +[22:52:46.140] dice before refine 0.0 and after 0.025723472237586975, label 0: tensor(0, device='cuda:0'), label 1: tensor(66, device='cuda:0') +[22:52:50.780] dice before refine 0.0 and after 0.8640961647033691, label 0: tensor(67, device='cuda:0'), label 1: tensor(49, device='cuda:0') +[22:52:51.151] dice before refine 0.0 and after 0.22909259796142578, label 0: tensor(0, device='cuda:0'), label 1: tensor(93, device='cuda:0') +[22:52:55.994] dice before refine 0.0 and after 0.8768942356109619, label 0: tensor(98, device='cuda:0'), label 1: tensor(66, device='cuda:0') +[22:52:57.264] epoch: 4/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.6609117497097362 stich left and right side (total size): 1 +[22:52:57.785] dice before refine 0.0 and after 0.21133707463741302, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:53:05.188] dice before refine 0.6951028108596802 and after 0.9424244165420532, label 0: tensor(175, device='cuda:0'), label 1: tensor(287, device='cuda:0') +[22:53:05.751] dice before refine 0.001680122222751379 and after 0.07193803787231445, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:53:14.185] dice before refine 0.7740659713745117 and after 0.8327724933624268, label 0: tensor(257, device='cuda:0'), label 1: tensor(509, device='cuda:0') +[22:53:14.866] dice before refine 0.1111111119389534 and after 0.025948498398065567, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:53:24.086] dice before refine 0.4016650319099426 and after 0.35107529163360596, label 0: tensor(103, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:53:24.934] dice before refine 0.08516115695238113 and after 0.01939445734024048, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:53:34.928] dice before refine 0.3619495928287506 and after 0.31639525294303894, label 0: tensor(10, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:53:35.387] dice before refine 0.07380441576242447 and after 0.2164468616247177, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:53:43.409] dice before refine 0.7370404601097107 and after 0.9338266849517822, label 0: tensor(534, device='cuda:0'), label 1: tensor(361, device='cuda:0') +[22:53:43.990] dice before refine 0.006092475261539221 and after 0.10479024797677994, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:53:52.995] dice before refine 0.7940438985824585 and after 0.8588095307350159, label 0: tensor(308, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:53:53.774] dice before refine 0.11996674537658691 and after 0.04748385027050972, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:54:03.295] dice before refine 0.36536267399787903 and after 0.35501617193222046, label 0: tensor(19, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:54:04.125] dice before refine 0.10527966916561127 and after 0.030985524877905846, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:54:14.250] dice before refine 0.3915891945362091 and after 0.3294200599193573, label 0: tensor(71, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:54:14.923] epoch: 4/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.2258683443069458 stich left and right side (total size): 1 +[22:54:15.475] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[22:54:18.310] dice before refine 0.0 and after 0.1111111119389534, label 0: tensor(1, device='cuda:0'), label 1: tensor(9, device='cuda:0') +[22:54:18.685] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[22:54:21.504] dice before refine 0.0 and after 0.0784313753247261, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[22:54:21.880] epoch: 4/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.007130125029520555 stich left and right side (total size): 1 +[22:54:22.335] dice before refine 0.0 and after 0.6277503371238708, label 0: tensor(0, device='cuda:0'), label 1: tensor(177, device='cuda:0') +[22:54:26.216] dice before refine 0.1705128252506256 and after 0.8693877458572388, label 0: tensor(67, device='cuda:0'), label 1: tensor(36, device='cuda:0') +[22:54:26.633] dice before refine 0.0 and after 0.7798290252685547, label 0: tensor(0, device='cuda:0'), label 1: tensor(502, device='cuda:0') +[22:54:32.240] dice before refine 0.4467446208000183 and after 0.8481451272964478, label 0: tensor(235, device='cuda:0'), label 1: tensor(92, device='cuda:0') +[22:54:32.614] dice before refine 0.0 and after 0.684909462928772, label 0: tensor(0, device='cuda:0'), label 1: tensor(178, device='cuda:0') +[22:54:36.258] dice before refine 0.26015302538871765 and after 0.8793399930000305, label 0: tensor(75, device='cuda:0'), label 1: tensor(47, device='cuda:0') +[22:54:36.668] dice before refine 0.0 and after 0.7540153861045837, label 0: tensor(0, device='cuda:0'), label 1: tensor(476, device='cuda:0') +[22:54:42.105] dice before refine 0.4836013913154602 and after 0.8998375535011292, label 0: tensor(211, device='cuda:0'), label 1: tensor(77, device='cuda:0') +[22:54:42.486] dice before refine 0.0 and after 0.6457809209823608, label 0: tensor(0, device='cuda:0'), label 1: tensor(266, device='cuda:0') +[22:54:46.692] dice before refine 0.6634894609451294 and after 0.8712453842163086, label 0: tensor(138, device='cuda:0'), label 1: tensor(109, device='cuda:0') +[22:54:47.109] dice before refine 0.3911530673503876 and after 0.6976935863494873, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:54:53.927] dice before refine 0.6806754469871521 and after 0.8918081521987915, label 0: tensor(300, device='cuda:0'), label 1: tensor(71, device='cuda:0') +[22:54:54.311] dice before refine 0.0 and after 0.7618853449821472, label 0: tensor(0, device='cuda:0'), label 1: tensor(327, device='cuda:0') +[22:54:58.443] dice before refine 0.5774737596511841 and after 0.8746867179870605, label 0: tensor(109, device='cuda:0'), label 1: tensor(55, device='cuda:0') +[22:54:58.867] dice before refine 0.607514500617981 and after 0.7058295607566833, label 0: tensor(0, device='cuda:0'), label 1: tensor(556, device='cuda:0') +[22:55:05.356] dice before refine 0.7349423766136169 and after 0.9074587821960449, label 0: tensor(237, device='cuda:0'), label 1: tensor(81, device='cuda:0') +[22:55:06.084] epoch: 4/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.8742133324796503 stich left and right side (total size): 1 +[22:55:06.580] dice before refine 0.0 and after 0.20410703122615814, label 0: tensor(0, device='cuda:0'), label 1: tensor(108, device='cuda:0') +[22:55:10.237] dice before refine 0.0 and after 0.8226442337036133, label 0: tensor(25, device='cuda:0'), label 1: tensor(51, device='cuda:0') +[22:55:10.654] dice before refine 0.0 and after 0.5216124057769775, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:55:17.415] dice before refine 0.499296098947525 and after 0.8674495220184326, label 0: tensor(263, device='cuda:0'), label 1: tensor(96, device='cuda:0') +[22:55:17.847] dice before refine 0.0 and after 0.5207509994506836, label 0: tensor(0, device='cuda:0'), label 1: tensor(149, device='cuda:0') +[22:55:21.524] dice before refine 0.0 and after 0.8306836485862732, label 0: tensor(83, device='cuda:0'), label 1: tensor(34, device='cuda:0') +[22:55:21.994] dice before refine 0.48421624302864075 and after 0.43971335887908936, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:55:30.720] dice before refine 0.7930055856704712 and after 0.9243650436401367, label 0: tensor(510, device='cuda:0'), label 1: tensor(151, device='cuda:0') +[22:55:31.642] epoch: 4/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.8217205865816637 stich left and right side (total size): 1 +[22:55:32.073] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(34, device='cuda:0') +[22:55:35.336] dice before refine 0.0 and after 0.8316429853439331, label 0: tensor(46, device='cuda:0'), label 1: tensor(25, device='cuda:0') +[22:55:35.692] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(42, device='cuda:0') +[22:55:38.916] dice before refine 0.0 and after 0.837067186832428, label 0: tensor(43, device='cuda:0'), label 1: tensor(19, device='cuda:0') +[22:55:39.282] dice before refine 0.0 and after 0.21684867143630981, label 0: tensor(0, device='cuda:0'), label 1: tensor(116, device='cuda:0') +[22:55:43.050] dice before refine 0.0 and after 0.8438605070114136, label 0: tensor(73, device='cuda:0'), label 1: tensor(35, device='cuda:0') +[22:55:43.420] dice before refine 0.0 and after 0.4719424545764923, label 0: tensor(0, device='cuda:0'), label 1: tensor(114, device='cuda:0') +[22:55:47.203] dice before refine 0.0 and after 0.8213755488395691, label 0: tensor(91, device='cuda:0'), label 1: tensor(25, device='cuda:0') +[22:55:47.573] dice before refine 0.0 and after 0.4815724790096283, label 0: tensor(0, device='cuda:0'), label 1: tensor(111, device='cuda:0') +[22:55:51.316] dice before refine 0.0 and after 0.8636884093284607, label 0: tensor(83, device='cuda:0'), label 1: tensor(22, device='cuda:0') +[22:55:51.691] dice before refine 0.0 and after 0.5496277809143066, label 0: tensor(0, device='cuda:0'), label 1: tensor(154, device='cuda:0') +[22:55:55.765] dice before refine 0.003331482410430908 and after 0.8161764740943909, label 0: tensor(123, device='cuda:0'), label 1: tensor(36, device='cuda:0') +[22:55:56.137] dice before refine 0.0 and after 0.3059028685092926, label 0: tensor(0, device='cuda:0'), label 1: tensor(129, device='cuda:0') +[22:56:00.751] dice before refine 0.03162699565291405 and after 0.803320586681366, label 0: tensor(167, device='cuda:0'), label 1: tensor(35, device='cuda:0') +[22:56:01.124] dice before refine 0.0 and after 0.06040892377495766, label 0: tensor(0, device='cuda:0'), label 1: tensor(116, device='cuda:0') +[22:56:05.606] dice before refine 0.024193547666072845 and after 0.8218657374382019, label 0: tensor(127, device='cuda:0'), label 1: tensor(45, device='cuda:0') +[22:56:06.331] epoch: 4/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.6476714282550595 stich left and right side (total size): 1 +[22:56:06.818] dice before refine 0.0 and after 0.5369511842727661, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:56:14.238] dice before refine 0.33596035838127136 and after 0.783513605594635, label 0: tensor(390, device='cuda:0'), label 1: tensor(104, device='cuda:0') +[22:56:14.663] dice before refine 0.0 and after 0.5939612984657288, label 0: tensor(0, device='cuda:0'), label 1: tensor(520, device='cuda:0') +[22:56:22.295] dice before refine 0.4250224232673645 and after 0.8333021402359009, label 0: tensor(382, device='cuda:0'), label 1: tensor(97, device='cuda:0') +[22:56:22.715] dice before refine 0.0 and after 0.5320120453834534, label 0: tensor(0, device='cuda:0'), label 1: tensor(454, device='cuda:0') +[22:56:29.299] dice before refine 0.4247649013996124 and after 0.8598540425300598, label 0: tensor(260, device='cuda:0'), label 1: tensor(135, device='cuda:0') +[22:56:29.723] dice before refine 0.0 and after 0.3861614465713501, label 0: tensor(0, device='cuda:0'), label 1: tensor(309, device='cuda:0') +[22:56:36.470] dice before refine 0.38904252648353577 and after 0.8672316670417786, label 0: tensor(295, device='cuda:0'), label 1: tensor(104, device='cuda:0') +[22:56:36.998] dice before refine 0.33800214529037476 and after 0.26974108815193176, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:56:47.767] dice before refine 0.6696392297744751 and after 0.8661708831787109, label 0: tensor(507, device='cuda:0'), label 1: tensor(503, device='cuda:0') +[22:56:48.295] dice before refine 0.32791271805763245 and after 0.2257792353630066, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:56:58.656] dice before refine 0.6369342803955078 and after 0.8630456924438477, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +[22:56:59.173] dice before refine 0.21478211879730225 and after 0.2852247953414917, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:57:09.570] dice before refine 0.6127193570137024 and after 0.8518475294113159, label 0: tensor(507, device='cuda:0'), label 1: tensor(306, device='cuda:0') +[22:57:10.082] dice before refine 0.18416762351989746 and after 0.3183121383190155, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:57:20.269] dice before refine 0.6241878867149353 and after 0.8599547147750854, label 0: tensor(509, device='cuda:0'), label 1: tensor(263, device='cuda:0') +[22:57:20.860] epoch: 4/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.6494757289236243 stich left and right side (total size): 1 +[22:57:21.372] dice before refine 0.5949477553367615 and after 0.7597402334213257, label 0: tensor(0, device='cuda:0'), label 1: tensor(141, device='cuda:0') +[22:57:25.747] dice before refine 0.7637022733688354 and after 0.9106982350349426, label 0: tensor(156, device='cuda:0'), label 1: tensor(59, device='cuda:0') +[22:57:26.133] dice before refine 0.5957018136978149 and after 0.8067050576210022, label 0: tensor(0, device='cuda:0'), label 1: tensor(224, device='cuda:0') +[22:57:30.639] dice before refine 0.7714200019836426 and after 0.9075907468795776, label 0: tensor(111, device='cuda:0'), label 1: tensor(39, device='cuda:0') +[22:57:31.016] dice before refine 0.6996756196022034 and after 0.7322344183921814, label 0: tensor(0, device='cuda:0'), label 1: tensor(133, device='cuda:0') +[22:57:35.630] dice before refine 0.7958613038063049 and after 0.9105302691459656, label 0: tensor(143, device='cuda:0'), label 1: tensor(38, device='cuda:0') +[22:57:36.013] dice before refine 0.5188981294631958 and after 0.810960590839386, label 0: tensor(0, device='cuda:0'), label 1: tensor(228, device='cuda:0') +[22:57:40.494] dice before refine 0.6098792552947998 and after 0.912972092628479, label 0: tensor(167, device='cuda:0'), label 1: tensor(70, device='cuda:0') +[22:57:40.933] epoch: 4/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.8874555067582564 stich left and right side (total size): 1 +[22:57:41.478] dice before refine 0.0 and after 0.17650863528251648, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:57:50.486] dice before refine 0.5667110085487366 and after 0.8720231652259827, label 0: tensor(506, device='cuda:0'), label 1: tensor(283, device='cuda:0') +[22:57:50.995] dice before refine 0.0 and after 0.028122998774051666, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:58:00.188] dice before refine 0.6330263018608093 and after 0.9021450281143188, label 0: tensor(506, device='cuda:0'), label 1: tensor(314, device='cuda:0') +[22:58:00.657] dice before refine 0.4095904231071472 and after 0.5125540494918823, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:58:09.317] dice before refine 0.768978476524353 and after 0.9109960198402405, label 0: tensor(510, device='cuda:0'), label 1: tensor(178, device='cuda:0') +[22:58:09.801] dice before refine 0.5086715817451477 and after 0.4915134608745575, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:58:18.878] dice before refine 0.7824868559837341 and after 0.9159559607505798, label 0: tensor(510, device='cuda:0'), label 1: tensor(160, device='cuda:0') +[22:58:19.466] dice before refine 0.4122371971607208 and after 0.2682875096797943, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:58:29.949] dice before refine 0.7609255909919739 and after 0.8354547023773193, label 0: tensor(501, device='cuda:0'), label 1: tensor(509, device='cuda:0') +[22:58:30.567] dice before refine 0.45796865224838257 and after 0.28754353523254395, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:58:40.532] dice before refine 0.7029172778129578 and after 0.804485023021698, label 0: tensor(506, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:58:40.982] dice before refine 0.21511627733707428 and after 0.3991531729698181, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:58:49.780] dice before refine 0.6223257780075073 and after 0.892562747001648, label 0: tensor(390, device='cuda:0'), label 1: tensor(132, device='cuda:0') +[22:58:50.212] dice before refine 0.0 and after 0.43666890263557434, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[22:58:57.860] dice before refine 0.6525707840919495 and after 0.8954315781593323, label 0: tensor(302, device='cuda:0'), label 1: tensor(99, device='cuda:0') +[22:58:58.392] epoch: 4/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.7215645773844286 stich left and right side (total size): 1 +[22:58:58.903] dice before refine 0.0 and after 0.060453400015830994, label 0: tensor(0, device='cuda:0'), label 1: tensor(37, device='cuda:0') +[22:59:01.986] dice before refine 0.0 and after 0.5905511975288391, label 0: tensor(51, device='cuda:0'), label 1: tensor(5, device='cuda:0') +[22:59:02.345] dice before refine 0.003484320593997836 and after 0.056338027119636536, label 0: tensor(0, device='cuda:0'), label 1: tensor(21, device='cuda:0') +[22:59:05.494] dice before refine 0.0 and after 0.450549453496933, label 0: tensor(30, device='cuda:0'), label 1: tensor(7, device='cuda:0') +[22:59:06.018] epoch: 4/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.4345551255074414 stich left and right side (total size): 1 +[22:59:06.018] - Val metrics mean dice: 0.5652097064909364 +[22:59:06.867] - Val metrics best mean dice: 0.5652097064909364 at epoch 4 +[22:59:26.809] epoch: 5/20, iter: 0/42: loss:2.393: rank:-1 +[22:59:37.915] epoch: 5/20, iter: 1/42: loss:2.2428: rank:-1 +[22:59:56.162] epoch: 5/20, iter: 2/42: loss:4.9151: rank:-1 +[23:00:16.253] epoch: 5/20, iter: 3/42: loss:1.925: rank:-1 +[23:00:26.641] epoch: 5/20, iter: 4/42: loss:3.1122: rank:-1 +[23:00:43.309] epoch: 5/20, iter: 5/42: loss:1.9817: rank:-1 +[23:01:04.066] epoch: 5/20, iter: 6/42: loss:3.1871: rank:-1 +[23:01:15.907] epoch: 5/20, iter: 7/42: loss:3.8375: rank:-1 +[23:01:35.490] epoch: 5/20, iter: 8/42: loss:1.7075: rank:-1 +[23:01:50.418] epoch: 5/20, iter: 9/42: loss:2.6663: rank:-1 +[23:02:05.985] epoch: 5/20, iter: 10/42: loss:1.8081: rank:-1 +[23:02:24.178] epoch: 5/20, iter: 11/42: loss:2.4053: rank:-1 +[23:02:39.338] epoch: 5/20, iter: 12/42: loss:2.601: rank:-1 +[23:02:58.677] epoch: 5/20, iter: 13/42: loss:1.6089: rank:-1 +[23:03:16.154] epoch: 5/20, iter: 14/42: loss:3.0675: rank:-1 +[23:03:32.309] epoch: 5/20, iter: 15/42: loss:2.0401: rank:-1 +[23:03:44.568] epoch: 5/20, iter: 16/42: loss:1.4565: rank:-1 +[23:03:55.818] epoch: 5/20, iter: 17/42: loss:3.9935: rank:-1 +[23:04:15.447] epoch: 5/20, iter: 18/42: loss:3.0909: rank:-1 +[23:04:25.420] epoch: 5/20, iter: 19/42: loss:3.5931: rank:-1 +[23:04:47.645] epoch: 5/20, iter: 20/42: loss:2.3811: rank:-1 +[23:05:08.174] epoch: 5/20, iter: 21/42: loss:1.4681: rank:-1 +[23:05:22.150] epoch: 5/20, iter: 22/42: loss:2.344: rank:-1 +[23:05:31.764] epoch: 5/20, iter: 23/42: loss:4.3031: rank:-1 +[23:05:48.139] epoch: 5/20, iter: 24/42: loss:1.8479: rank:-1 +[23:06:01.512] epoch: 5/20, iter: 25/42: loss:1.3053: rank:-1 +[23:06:17.692] epoch: 5/20, iter: 26/42: loss:3.5517: rank:-1 +[23:06:29.222] epoch: 5/20, iter: 27/42: loss:3.0525: rank:-1 +[23:06:49.816] epoch: 5/20, iter: 28/42: loss:2.6725: rank:-1 +[23:07:00.690] epoch: 5/20, iter: 29/42: loss:2.7767: rank:-1 +[23:07:10.616] epoch: 5/20, iter: 30/42: loss:2.527: rank:-1 +[23:07:19.662] epoch: 5/20, iter: 31/42: loss:2.2503: rank:-1 +[23:07:36.152] epoch: 5/20, iter: 32/42: loss:1.3422: rank:-1 +[23:07:58.437] epoch: 5/20, iter: 33/42: loss:3.2799: rank:-1 +[23:08:17.042] epoch: 5/20, iter: 34/42: loss:2.0241: rank:-1 +[23:08:37.452] epoch: 5/20, iter: 35/42: loss:4.1082: rank:-1 +[23:08:55.770] epoch: 5/20, iter: 36/42: loss:1.6889: rank:-1 +[23:09:07.893] epoch: 5/20, iter: 37/42: loss:1.8006: rank:-1 +[23:09:22.182] epoch: 5/20, iter: 38/42: loss:2.6796: rank:-1 +[23:09:38.409] epoch: 5/20, iter: 39/42: loss:3.7335: rank:-1 +[23:09:58.868] epoch: 5/20, iter: 40/42: loss:2.6827: rank:-1 +[23:10:10.912] epoch: 5/20, iter: 41/42: loss:1.4579: rank:-1 +[23:10:10.913] - Train metrics: 2.5931175 +[23:10:14.577] dice before refine 0.00019492227875161916 and after 0.5012001991271973, label 0: tensor(0, device='cuda:0'), label 1: tensor(162, device='cuda:0') +[23:10:19.644] dice before refine 0.3154827058315277 and after 0.8735632300376892, label 0: tensor(212, device='cuda:0'), label 1: tensor(81, device='cuda:0') +[23:10:20.105] dice before refine 0.006712254136800766 and after 0.36816471815109253, label 0: tensor(0, device='cuda:0'), label 1: tensor(413, device='cuda:0') +[23:10:28.043] dice before refine 0.2800639271736145 and after 0.6238974928855896, label 0: tensor(426, device='cuda:0'), label 1: tensor(162, device='cuda:0') +[23:10:28.421] dice before refine 0.014538357965648174 and after 0.03994328901171684, label 0: tensor(0, device='cuda:0'), label 1: tensor(46, device='cuda:0') +[23:10:31.787] dice before refine 0.11360239237546921 and after 0.335201233625412, label 0: tensor(41, device='cuda:0'), label 1: tensor(9, device='cuda:0') +[23:10:32.207] dice before refine 0.014351334422826767 and after 0.12210559099912643, label 0: tensor(0, device='cuda:0'), label 1: tensor(218, device='cuda:0') +[23:10:38.156] dice before refine 0.4607190489768982 and after 0.8460918664932251, label 0: tensor(159, device='cuda:0'), label 1: tensor(68, device='cuda:0') +[23:10:38.582] dice before refine 0.001035241293720901 and after 0.24728693068027496, label 0: tensor(0, device='cuda:0'), label 1: tensor(337, device='cuda:0') +[23:10:45.781] dice before refine 0.31890955567359924 and after 0.7894070148468018, label 0: tensor(282, device='cuda:0'), label 1: tensor(123, device='cuda:0') +[23:10:46.411] epoch: 5/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.5207929306409576 stich left and right side (total size): 1 +[23:10:46.948] dice before refine 0.012387851253151894 and after 0.10111485421657562, label 0: tensor(0, device='cuda:0'), label 1: tensor(148, device='cuda:0') +[23:10:54.070] dice before refine 0.12304190546274185 and after 0.3018389940261841, label 0: tensor(510, device='cuda:0'), label 1: tensor(36, device='cuda:0') +[23:10:54.447] dice before refine 0.07424689084291458 and after 0.18892981112003326, label 0: tensor(0, device='cuda:0'), label 1: tensor(99, device='cuda:0') +[23:11:01.024] dice before refine 0.32176321744918823 and after 0.7891549468040466, label 0: tensor(104, device='cuda:0'), label 1: tensor(37, device='cuda:0') +[23:11:01.422] dice before refine 0.010367555543780327 and after 0.07656821608543396, label 0: tensor(0, device='cuda:0'), label 1: tensor(91, device='cuda:0') +[23:11:08.141] dice before refine 0.22277195751667023 and after 0.5084859728813171, label 0: tensor(540, device='cuda:0'), label 1: tensor(45, device='cuda:0') +[23:11:08.520] dice before refine 0.07227316498756409 and after 0.2288685292005539, label 0: tensor(0, device='cuda:0'), label 1: tensor(175, device='cuda:0') +[23:11:14.251] dice before refine 0.5882184505462646 and after 0.8379629850387573, label 0: tensor(149, device='cuda:0'), label 1: tensor(20, device='cuda:0') +[23:11:15.492] epoch: 5/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.5580316199497743 stich left and right side (total size): 1 +[23:11:16.020] dice before refine 0.0003270244924351573 and after 0.2754277288913727, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:11:23.159] dice before refine 0.7301410436630249 and after 0.944639265537262, label 0: tensor(264, device='cuda:0'), label 1: tensor(137, device='cuda:0') +[23:11:23.731] dice before refine 0.5345797538757324 and after 0.3861123323440552, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:11:33.087] dice before refine 0.8082624673843384 and after 0.9138917326927185, label 0: tensor(500, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:11:33.784] dice before refine 0.33487507700920105 and after 0.08559856563806534, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:11:42.914] dice before refine 0.5181309580802917 and after 0.45562544465065, label 0: tensor(94, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:11:43.762] dice before refine 0.38770532608032227 and after 0.11950626224279404, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:11:53.474] dice before refine 0.6048130989074707 and after 0.48827627301216125, label 0: tensor(26, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:11:53.933] dice before refine 0.1586432158946991 and after 0.3301394283771515, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:12:01.988] dice before refine 0.7743406295776367 and after 0.9435120224952698, label 0: tensor(357, device='cuda:0'), label 1: tensor(261, device='cuda:0') +[23:12:02.585] dice before refine 0.24002790451049805 and after 0.2283528745174408, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:12:12.268] dice before refine 0.8325729370117188 and after 0.9422819018363953, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +[23:12:13.049] dice before refine 0.5113943219184875 and after 0.16282027959823608, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:12:22.358] dice before refine 0.6117667555809021 and after 0.5156648755073547, label 0: tensor(40, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:12:23.192] dice before refine 0.3786715865135193 and after 0.09341904520988464, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:12:33.448] dice before refine 0.530225932598114 and after 0.46147459745407104, label 0: tensor(36, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:12:34.130] epoch: 5/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.3855675702745264 stich left and right side (total size): 1 +[23:12:34.654] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[23:12:37.546] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +[23:12:37.927] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[23:12:40.801] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +[23:12:41.188] epoch: 5/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +[23:12:41.648] dice before refine 0.0 and after 0.4227820336818695, label 0: tensor(0, device='cuda:0'), label 1: tensor(194, device='cuda:0') +[23:12:45.509] dice before refine 0.05796118825674057 and after 0.36731231212615967, label 0: tensor(94, device='cuda:0'), label 1: tensor(36, device='cuda:0') +[23:12:45.931] dice before refine 0.0 and after 0.5527812242507935, label 0: tensor(0, device='cuda:0'), label 1: tensor(498, device='cuda:0') +[23:12:51.652] dice before refine 0.14597204327583313 and after 0.4777544140815735, label 0: tensor(231, device='cuda:0'), label 1: tensor(71, device='cuda:0') +[23:12:52.030] dice before refine 0.0 and after 0.8037456274032593, label 0: tensor(0, device='cuda:0'), label 1: tensor(225, device='cuda:0') +[23:12:55.786] dice before refine 0.4616161584854126 and after 0.8857239484786987, label 0: tensor(66, device='cuda:0'), label 1: tensor(36, device='cuda:0') +[23:12:56.203] dice before refine 0.0 and after 0.6152201294898987, label 0: tensor(0, device='cuda:0'), label 1: tensor(526, device='cuda:0') +[23:13:02.159] dice before refine 0.5743051171302795 and after 0.8957602977752686, label 0: tensor(267, device='cuda:0'), label 1: tensor(61, device='cuda:0') +[23:13:02.544] dice before refine 0.0 and after 0.5444589257240295, label 0: tensor(0, device='cuda:0'), label 1: tensor(179, device='cuda:0') +[23:13:06.873] dice before refine 0.6828709244728088 and after 0.8856061697006226, label 0: tensor(136, device='cuda:0'), label 1: tensor(48, device='cuda:0') +[23:13:07.305] dice before refine 0.4969111382961273 and after 0.6570879817008972, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:13:14.531] dice before refine 0.7450127005577087 and after 0.8700193166732788, label 0: tensor(304, device='cuda:0'), label 1: tensor(94, device='cuda:0') +[23:13:14.916] dice before refine 0.0 and after 0.346850723028183, label 0: tensor(0, device='cuda:0'), label 1: tensor(216, device='cuda:0') +[23:13:19.132] dice before refine 0.7007364630699158 and after 0.8872647285461426, label 0: tensor(118, device='cuda:0'), label 1: tensor(44, device='cuda:0') +[23:13:19.556] dice before refine 0.39072147011756897 and after 0.5598410964012146, label 0: tensor(0, device='cuda:0'), label 1: tensor(528, device='cuda:0') +[23:13:26.096] dice before refine 0.8368059396743774 and after 0.9141128063201904, label 0: tensor(221, device='cuda:0'), label 1: tensor(81, device='cuda:0') +[23:13:26.781] epoch: 5/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.6085449619726702 stich left and right side (total size): 1 +[23:13:27.286] dice before refine 0.0 and after 0.32078009843826294, label 0: tensor(0, device='cuda:0'), label 1: tensor(143, device='cuda:0') +[23:13:31.122] dice before refine 0.0856672152876854 and after 0.7974904179573059, label 0: tensor(72, device='cuda:0'), label 1: tensor(31, device='cuda:0') +[23:13:31.545] dice before refine 0.006312916055321693 and after 0.3888758718967438, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:13:38.887] dice before refine 0.4490358233451843 and after 0.8472574949264526, label 0: tensor(280, device='cuda:0'), label 1: tensor(81, device='cuda:0') +[23:13:39.347] dice before refine 0.0 and after 0.3701777160167694, label 0: tensor(0, device='cuda:0'), label 1: tensor(140, device='cuda:0') +[23:13:43.285] dice before refine 0.0038784744683653116 and after 0.8245020508766174, label 0: tensor(50, device='cuda:0'), label 1: tensor(23, device='cuda:0') +[23:13:43.769] dice before refine 0.6211885213851929 and after 0.48908016085624695, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:13:53.564] dice before refine 0.8066784143447876 and after 0.9048429727554321, label 0: tensor(510, device='cuda:0'), label 1: tensor(162, device='cuda:0') +[23:13:54.509] epoch: 5/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.8144636262546886 stich left and right side (total size): 1 +[23:13:54.932] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(43, device='cuda:0') +[23:13:58.199] dice before refine 0.0 and after 0.844878077507019, label 0: tensor(34, device='cuda:0'), label 1: tensor(16, device='cuda:0') +[23:13:58.562] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(40, device='cuda:0') +[23:14:01.906] dice before refine 0.0 and after 0.8287606239318848, label 0: tensor(36, device='cuda:0'), label 1: tensor(15, device='cuda:0') +[23:14:02.290] dice before refine 0.0 and after 0.04274425283074379, label 0: tensor(0, device='cuda:0'), label 1: tensor(118, device='cuda:0') +[23:14:06.804] dice before refine 0.0 and after 0.04159676283597946, label 0: tensor(99, device='cuda:0'), label 1: tensor(28, device='cuda:0') +[23:14:07.180] dice before refine 0.0 and after 0.36961451172828674, label 0: tensor(0, device='cuda:0'), label 1: tensor(139, device='cuda:0') +[23:14:11.341] dice before refine 0.0 and after 0.823699414730072, label 0: tensor(88, device='cuda:0'), label 1: tensor(27, device='cuda:0') +[23:14:11.712] dice before refine 0.0 and after 0.5927342176437378, label 0: tensor(0, device='cuda:0'), label 1: tensor(148, device='cuda:0') +[23:14:15.325] dice before refine 0.0 and after 0.8771929740905762, label 0: tensor(59, device='cuda:0'), label 1: tensor(24, device='cuda:0') +[23:14:15.704] dice before refine 0.0 and after 0.4486458897590637, label 0: tensor(0, device='cuda:0'), label 1: tensor(159, device='cuda:0') +[23:14:19.553] dice before refine 0.0 and after 0.8338368535041809, label 0: tensor(71, device='cuda:0'), label 1: tensor(30, device='cuda:0') +[23:14:19.927] dice before refine 0.0003779146645683795 and after 0.005326002836227417, label 0: tensor(0, device='cuda:0'), label 1: tensor(123, device='cuda:0') +[23:14:25.718] dice before refine 0.03779486566781998 and after 0.7444335222244263, label 0: tensor(275, device='cuda:0'), label 1: tensor(39, device='cuda:0') +[23:14:26.096] dice before refine 0.0 and after 0.04878048598766327, label 0: tensor(0, device='cuda:0'), label 1: tensor(117, device='cuda:0') +[23:14:30.545] dice before refine 0.009852216579020023 and after 0.8135955333709717, label 0: tensor(99, device='cuda:0'), label 1: tensor(50, device='cuda:0') +[23:14:31.226] epoch: 5/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.08842315982011231 stich left and right side (total size): 1 +[23:14:31.715] dice before refine 0.01623014733195305 and after 0.5345309376716614, label 0: tensor(0, device='cuda:0'), label 1: tensor(542, device='cuda:0') +[23:14:39.381] dice before refine 0.3981047570705414 and after 0.7462735772132874, label 0: tensor(455, device='cuda:0'), label 1: tensor(90, device='cuda:0') +[23:14:39.807] dice before refine 0.04942942410707474 and after 0.47088518738746643, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:14:47.497] dice before refine 0.44549813866615295 and after 0.8253519535064697, label 0: tensor(479, device='cuda:0'), label 1: tensor(88, device='cuda:0') +[23:14:47.920] dice before refine 0.005572931375354528 and after 0.5119848251342773, label 0: tensor(0, device='cuda:0'), label 1: tensor(404, device='cuda:0') +[23:14:54.607] dice before refine 0.47651809453964233 and after 0.8643388152122498, label 0: tensor(364, device='cuda:0'), label 1: tensor(110, device='cuda:0') +[23:14:55.031] dice before refine 0.007570198271423578 and after 0.5254745483398438, label 0: tensor(0, device='cuda:0'), label 1: tensor(340, device='cuda:0') +[23:15:02.054] dice before refine 0.42888107895851135 and after 0.8716623783111572, label 0: tensor(326, device='cuda:0'), label 1: tensor(96, device='cuda:0') +[23:15:02.617] dice before refine 0.5613867044448853 and after 0.4133002758026123, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:15:13.600] dice before refine 0.6643506288528442 and after 0.8499692678451538, label 0: tensor(510, device='cuda:0'), label 1: tensor(314, device='cuda:0') +[23:15:14.132] dice before refine 0.49194613099098206 and after 0.39112600684165955, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:15:25.215] dice before refine 0.6730049252510071 and after 0.8391973972320557, label 0: tensor(510, device='cuda:0'), label 1: tensor(268, device='cuda:0') +[23:15:25.737] dice before refine 0.2754332721233368 and after 0.2807283401489258, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:15:36.793] dice before refine 0.5463424324989319 and after 0.7158757448196411, label 0: tensor(510, device='cuda:0'), label 1: tensor(169, device='cuda:0') +[23:15:37.316] dice before refine 0.21851873397827148 and after 0.29584866762161255, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:15:47.770] dice before refine 0.6691932678222656 and after 0.841548502445221, label 0: tensor(510, device='cuda:0'), label 1: tensor(190, device='cuda:0') +[23:15:48.348] epoch: 5/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.6981083615259691 stich left and right side (total size): 1 +[23:15:48.857] dice before refine 0.6736818552017212 and after 0.7096238732337952, label 0: tensor(0, device='cuda:0'), label 1: tensor(150, device='cuda:0') +[23:15:53.336] dice before refine 0.821198046207428 and after 0.9071546196937561, label 0: tensor(110, device='cuda:0'), label 1: tensor(47, device='cuda:0') +[23:15:53.729] dice before refine 0.8038946986198425 and after 0.8240556716918945, label 0: tensor(0, device='cuda:0'), label 1: tensor(129, device='cuda:0') +[23:15:58.248] dice before refine 0.7808570861816406 and after 0.898876428604126, label 0: tensor(125, device='cuda:0'), label 1: tensor(48, device='cuda:0') +[23:15:58.630] dice before refine 0.5379094481468201 and after 0.5280132293701172, label 0: tensor(0, device='cuda:0'), label 1: tensor(159, device='cuda:0') +[23:16:03.033] dice before refine 0.7912145853042603 and after 0.9032065868377686, label 0: tensor(154, device='cuda:0'), label 1: tensor(49, device='cuda:0') +[23:16:03.420] dice before refine 0.8060008883476257 and after 0.738231897354126, label 0: tensor(0, device='cuda:0'), label 1: tensor(176, device='cuda:0') +[23:16:07.894] dice before refine 0.7719529867172241 and after 0.8910630941390991, label 0: tensor(114, device='cuda:0'), label 1: tensor(59, device='cuda:0') +[23:16:08.324] epoch: 5/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.8666615648703142 stich left and right side (total size): 1 +[23:16:08.857] dice before refine 0.0 and after 0.232162207365036, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:16:18.140] dice before refine 0.538459300994873 and after 0.8746965527534485, label 0: tensor(508, device='cuda:0'), label 1: tensor(129, device='cuda:0') +[23:16:18.643] dice before refine 0.0 and after 0.12525242567062378, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:16:28.758] dice before refine 0.6115233898162842 and after 0.892443835735321, label 0: tensor(510, device='cuda:0'), label 1: tensor(229, device='cuda:0') +[23:16:29.220] dice before refine 0.5311179161071777 and after 0.5896535515785217, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:16:37.756] dice before refine 0.7874723076820374 and after 0.9194692373275757, label 0: tensor(510, device='cuda:0'), label 1: tensor(122, device='cuda:0') +[23:16:38.233] dice before refine 0.6452817320823669 and after 0.6745743751525879, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:16:47.152] dice before refine 0.7817838788032532 and after 0.9085165858268738, label 0: tensor(510, device='cuda:0'), label 1: tensor(96, device='cuda:0') +[23:16:47.732] dice before refine 0.5402132868766785 and after 0.48014625906944275, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:16:58.676] dice before refine 0.763927161693573 and after 0.8780884146690369, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +[23:16:59.288] dice before refine 0.541120171546936 and after 0.4507501721382141, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:17:10.332] dice before refine 0.7570347785949707 and after 0.8652467131614685, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +[23:17:10.778] dice before refine 0.18886753916740417 and after 0.29307833313941956, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:17:19.417] dice before refine 0.39314839243888855 and after 0.5833039879798889, label 0: tensor(510, device='cuda:0'), label 1: tensor(110, device='cuda:0') +[23:17:19.846] dice before refine 0.1832834780216217 and after 0.3821084797382355, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:17:27.372] dice before refine 0.6499282717704773 and after 0.884669303894043, label 0: tensor(516, device='cuda:0'), label 1: tensor(96, device='cuda:0') +[23:17:27.859] epoch: 5/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.7472195273095911 stich left and right side (total size): 1 +[23:17:28.378] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(20, device='cuda:0') +[23:17:31.373] dice before refine 0.0 and after 0.006611062213778496, label 0: tensor(19, device='cuda:0'), label 1: tensor(42, device='cuda:0') +[23:17:31.722] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(23, device='cuda:0') +[23:17:34.728] dice before refine 0.0 and after 0.519298255443573, label 0: tensor(43, device='cuda:0'), label 1: tensor(5, device='cuda:0') +[23:17:35.241] epoch: 5/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.3972210477698933 stich left and right side (total size): 1 +[23:17:35.241] - Val metrics mean dice: 0.5168213063989543 +[23:17:35.833] - Val metrics best mean dice: 0.5652097064909364 at epoch 4 +[23:18:05.595] epoch: 6/20, iter: 0/42: loss:2.5203: rank:-1 +[23:18:29.963] epoch: 6/20, iter: 1/42: loss:2.2863: rank:-1 +[23:18:50.439] epoch: 6/20, iter: 2/42: loss:4.815: rank:-1 +[23:19:07.737] epoch: 6/20, iter: 3/42: loss:1.4862: rank:-1 +[23:19:26.005] epoch: 6/20, iter: 4/42: loss:2.6548: rank:-1 +[23:19:45.469] epoch: 6/20, iter: 5/42: loss:1.7495: rank:-1 +[23:19:56.950] epoch: 6/20, iter: 6/42: loss:4.1189: rank:-1 +[23:20:11.472] epoch: 6/20, iter: 7/42: loss:2.9261: rank:-1 +[23:20:31.366] epoch: 6/20, iter: 8/42: loss:1.9237: rank:-1 +[23:20:53.967] epoch: 6/20, iter: 9/42: loss:1.7799: rank:-1 +[23:21:16.328] epoch: 6/20, iter: 10/42: loss:2.3469: rank:-1 +[23:21:29.262] epoch: 6/20, iter: 11/42: loss:3.098: rank:-1 +[23:21:48.634] epoch: 6/20, iter: 12/42: loss:2.5778: rank:-1 +[23:21:58.171] epoch: 6/20, iter: 13/42: loss:4.0354: rank:-1 +[23:22:16.187] epoch: 6/20, iter: 14/42: loss:3.0095: rank:-1 +[23:22:40.815] epoch: 6/20, iter: 15/42: loss:2.802: rank:-1 +[23:22:57.010] epoch: 6/20, iter: 16/42: loss:3.0979: rank:-1 +[23:23:11.854] epoch: 6/20, iter: 17/42: loss:1.8857: rank:-1 +[23:23:23.411] epoch: 6/20, iter: 18/42: loss:3.2246: rank:-1 +[23:23:33.974] epoch: 6/20, iter: 19/42: loss:3.2133: rank:-1 +[23:23:47.605] epoch: 6/20, iter: 20/42: loss:1.3166: rank:-1 +[23:24:07.170] epoch: 6/20, iter: 21/42: loss:1.5412: rank:-1 +[23:24:23.091] epoch: 6/20, iter: 22/42: loss:2.872: rank:-1 +[23:24:35.219] epoch: 6/20, iter: 23/42: loss:3.2445: rank:-1 +[23:24:45.244] epoch: 6/20, iter: 24/42: loss:3.2979: rank:-1 +[23:24:57.778] epoch: 6/20, iter: 25/42: loss:2.4248: rank:-1 +[23:25:08.176] epoch: 6/20, iter: 26/42: loss:1.9496: rank:-1 +[23:25:24.861] epoch: 6/20, iter: 27/42: loss:1.701: rank:-1 +[23:25:43.023] epoch: 6/20, iter: 28/42: loss:1.6302: rank:-1 +[23:26:02.917] epoch: 6/20, iter: 29/42: loss:1.3841: rank:-1 +[23:26:17.864] epoch: 6/20, iter: 30/42: loss:4.8785: rank:-1 +[23:26:31.118] epoch: 6/20, iter: 31/42: loss:1.6947: rank:-1 +[23:26:42.065] epoch: 6/20, iter: 32/42: loss:1.9282: rank:-1 +[23:26:53.049] epoch: 6/20, iter: 33/42: loss:2.7476: rank:-1 +[23:27:10.238] epoch: 6/20, iter: 34/42: loss:1.4296: rank:-1 +[23:27:28.987] epoch: 6/20, iter: 35/42: loss:1.6649: rank:-1 +[23:27:49.031] epoch: 6/20, iter: 36/42: loss:1.6567: rank:-1 +[23:28:01.237] epoch: 6/20, iter: 37/42: loss:1.6536: rank:-1 +[23:28:11.382] epoch: 6/20, iter: 38/42: loss:2.6087: rank:-1 +[23:28:31.198] epoch: 6/20, iter: 39/42: loss:1.4839: rank:-1 +[23:28:50.244] epoch: 6/20, iter: 40/42: loss:1.7981: rank:-1 +[23:28:55.489] epoch: 6/20, iter: 41/42: loss:1.4183: rank:-1 +[23:28:55.490] - Train metrics: 2.4256337 +[23:28:59.254] dice before refine 0.0 and after 0.7023195624351501, label 0: tensor(0, device='cuda:0'), label 1: tensor(183, device='cuda:0') +[23:29:04.598] dice before refine 0.20547401905059814 and after 0.8824971914291382, label 0: tensor(154, device='cuda:0'), label 1: tensor(73, device='cuda:0') +[23:29:05.044] dice before refine 0.005217164289206266 and after 0.6374923586845398, label 0: tensor(0, device='cuda:0'), label 1: tensor(385, device='cuda:0') +[23:29:12.679] dice before refine 0.517228901386261 and after 0.8690697550773621, label 0: tensor(251, device='cuda:0'), label 1: tensor(137, device='cuda:0') +[23:29:13.046] dice before refine 0.03689449280500412 and after 0.26671943068504333, label 0: tensor(0, device='cuda:0'), label 1: tensor(47, device='cuda:0') +[23:29:16.426] dice before refine 0.7504078149795532 and after 0.8811749219894409, label 0: tensor(63, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[23:29:16.847] dice before refine 0.036761440336704254 and after 0.4323313236236572, label 0: tensor(0, device='cuda:0'), label 1: tensor(217, device='cuda:0') +[23:29:22.175] dice before refine 0.5683581829071045 and after 0.8559481501579285, label 0: tensor(152, device='cuda:0'), label 1: tensor(81, device='cuda:0') +[23:29:22.597] dice before refine 0.02557544782757759 and after 0.6538415551185608, label 0: tensor(0, device='cuda:0'), label 1: tensor(301, device='cuda:0') +[23:29:28.949] dice before refine 0.5311284065246582 and after 0.8664733171463013, label 0: tensor(288, device='cuda:0'), label 1: tensor(135, device='cuda:0') +[23:29:29.475] epoch: 6/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.8123877752910961 stich left and right side (total size): 1 +[23:29:29.997] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(117, device='cuda:0') +[23:29:34.630] dice before refine 0.0 and after 0.8952728509902954, label 0: tensor(165, device='cuda:0'), label 1: tensor(56, device='cuda:0') +[23:29:35.004] dice before refine 0.06981561332941055 and after 0.32457858324050903, label 0: tensor(0, device='cuda:0'), label 1: tensor(133, device='cuda:0') +[23:29:40.169] dice before refine 0.16776315867900848 and after 0.8920035362243652, label 0: tensor(100, device='cuda:0'), label 1: tensor(38, device='cuda:0') +[23:29:40.563] dice before refine 0.0 and after 0.05820853263139725, label 0: tensor(0, device='cuda:0'), label 1: tensor(118, device='cuda:0') +[23:29:45.315] dice before refine 0.0 and after 0.900136411190033, label 0: tensor(136, device='cuda:0'), label 1: tensor(37, device='cuda:0') +[23:29:45.687] dice before refine 0.05947849154472351 and after 0.28011709451675415, label 0: tensor(0, device='cuda:0'), label 1: tensor(114, device='cuda:0') +[23:29:50.506] dice before refine 0.3906327784061432 and after 0.9080920815467834, label 0: tensor(114, device='cuda:0'), label 1: tensor(51, device='cuda:0') +[23:29:51.814] epoch: 6/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.8070553649555553 stich left and right side (total size): 1 +[23:29:52.344] dice before refine 0.0 and after 0.23718713223934174, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:29:59.971] dice before refine 0.6421627998352051 and after 0.9400132894515991, label 0: tensor(194, device='cuda:0'), label 1: tensor(129, device='cuda:0') +[23:30:00.536] dice before refine 0.39632391929626465 and after 0.2023351788520813, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:30:09.660] dice before refine 0.7374244928359985 and after 0.8597431182861328, label 0: tensor(465, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:30:10.340] dice before refine 0.11468375474214554 and after 0.09175398200750351, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:30:18.669] dice before refine 0.5313097238540649 and after 0.6683768630027771, label 0: tensor(64, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:30:19.514] dice before refine 0.22945158183574677 and after 0.06343633681535721, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:30:29.772] dice before refine 0.4300764501094818 and after 0.41056105494499207, label 0: tensor(107, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:30:30.228] dice before refine 0.10694866627454758 and after 0.2249240130186081, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:30:38.871] dice before refine 0.727120041847229 and after 0.9321016669273376, label 0: tensor(392, device='cuda:0'), label 1: tensor(196, device='cuda:0') +[23:30:39.452] dice before refine 0.16060085594654083 and after 0.09079024940729141, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:30:48.509] dice before refine 0.8141247034072876 and after 0.8506736159324646, label 0: tensor(406, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:30:49.282] dice before refine 0.3794203996658325 and after 0.1292005181312561, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:30:59.872] dice before refine 0.4205636978149414 and after 0.4297387897968292, label 0: tensor(115, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:31:00.702] dice before refine 0.23272961378097534 and after 0.05012864992022514, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:31:11.582] dice before refine 0.34846240282058716 and after 0.3085865080356598, label 0: tensor(95, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:31:12.293] epoch: 6/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.30866698040203616 stich left and right side (total size): 1 +[23:31:12.811] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[23:31:15.728] dice before refine 0.0 and after 0.0, label 0: tensor(14, device='cuda:0'), label 1: tensor(16, device='cuda:0') +[23:31:16.108] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[23:31:19.024] dice before refine 0.0 and after 0.37037035822868347, label 0: tensor(3, device='cuda:0'), label 1: tensor(16, device='cuda:0') +[23:31:19.418] epoch: 6/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.17379571226510135 stich left and right side (total size): 1 +[23:31:19.881] dice before refine 0.0 and after 0.600375235080719, label 0: tensor(0, device='cuda:0'), label 1: tensor(142, device='cuda:0') +[23:31:23.788] dice before refine 0.2848447859287262 and after 0.8601855039596558, label 0: tensor(92, device='cuda:0'), label 1: tensor(34, device='cuda:0') +[23:31:24.210] dice before refine 0.0 and after 0.8097983002662659, label 0: tensor(0, device='cuda:0'), label 1: tensor(519, device='cuda:0') +[23:31:29.708] dice before refine 0.5132450461387634 and after 0.9081069231033325, label 0: tensor(117, device='cuda:0'), label 1: tensor(77, device='cuda:0') +[23:31:30.082] dice before refine 0.0 and after 0.7585681676864624, label 0: tensor(0, device='cuda:0'), label 1: tensor(173, device='cuda:0') +[23:31:33.870] dice before refine 0.2769981622695923 and after 0.8741722106933594, label 0: tensor(76, device='cuda:0'), label 1: tensor(43, device='cuda:0') +[23:31:34.287] dice before refine 0.0 and after 0.7284697890281677, label 0: tensor(0, device='cuda:0'), label 1: tensor(530, device='cuda:0') +[23:31:39.979] dice before refine 0.5743444561958313 and after 0.8975609540939331, label 0: tensor(219, device='cuda:0'), label 1: tensor(79, device='cuda:0') +[23:31:40.364] dice before refine 0.0 and after 0.6632105708122253, label 0: tensor(0, device='cuda:0'), label 1: tensor(326, device='cuda:0') +[23:31:44.907] dice before refine 0.6452915668487549 and after 0.8684993982315063, label 0: tensor(115, device='cuda:0'), label 1: tensor(31, device='cuda:0') +[23:31:45.339] dice before refine 0.4499092698097229 and after 0.6915497779846191, label 0: tensor(0, device='cuda:0'), label 1: tensor(508, device='cuda:0') +[23:31:51.800] dice before refine 0.838551938533783 and after 0.9230939745903015, label 0: tensor(263, device='cuda:0'), label 1: tensor(96, device='cuda:0') +[23:31:52.193] dice before refine 0.0 and after 0.7349497079849243, label 0: tensor(0, device='cuda:0'), label 1: tensor(428, device='cuda:0') +[23:31:56.590] dice before refine 0.7051137685775757 and after 0.8703573942184448, label 0: tensor(114, device='cuda:0'), label 1: tensor(55, device='cuda:0') +[23:31:57.015] dice before refine 0.49020469188690186 and after 0.6201410889625549, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:32:03.729] dice before refine 0.8584835529327393 and after 0.9185994863510132, label 0: tensor(274, device='cuda:0'), label 1: tensor(101, device='cuda:0') +[23:32:04.473] epoch: 6/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.8687470609491522 stich left and right side (total size): 1 +[23:32:04.977] dice before refine 0.0 and after 0.6018783450126648, label 0: tensor(0, device='cuda:0'), label 1: tensor(132, device='cuda:0') +[23:32:08.591] dice before refine 0.0 and after 0.8489919900894165, label 0: tensor(102, device='cuda:0'), label 1: tensor(19, device='cuda:0') +[23:32:09.013] dice before refine 0.0 and after 0.714106023311615, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:32:16.091] dice before refine 0.48288974165916443 and after 0.8517851233482361, label 0: tensor(355, device='cuda:0'), label 1: tensor(62, device='cuda:0') +[23:32:16.539] dice before refine 0.0 and after 0.4883720874786377, label 0: tensor(0, device='cuda:0'), label 1: tensor(100, device='cuda:0') +[23:32:20.165] dice before refine 0.0 and after 0.8461819291114807, label 0: tensor(59, device='cuda:0'), label 1: tensor(30, device='cuda:0') +[23:32:20.646] dice before refine 0.6416371464729309 and after 0.6184749007225037, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:32:29.472] dice before refine 0.7603178024291992 and after 0.9116299152374268, label 0: tensor(510, device='cuda:0'), label 1: tensor(130, device='cuda:0') +[23:32:30.390] epoch: 6/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.8557750907811251 stich left and right side (total size): 1 +[23:32:30.817] dice before refine 0.0 and after 0.44078946113586426, label 0: tensor(0, device='cuda:0'), label 1: tensor(51, device='cuda:0') +[23:32:34.202] dice before refine 0.0 and after 0.8257426023483276, label 0: tensor(50, device='cuda:0'), label 1: tensor(17, device='cuda:0') +[23:32:34.571] dice before refine 0.0 and after 0.19708029925823212, label 0: tensor(0, device='cuda:0'), label 1: tensor(40, device='cuda:0') +[23:32:37.950] dice before refine 0.0 and after 0.821328341960907, label 0: tensor(50, device='cuda:0'), label 1: tensor(15, device='cuda:0') +[23:32:38.327] dice before refine 0.0 and after 0.6080971956253052, label 0: tensor(0, device='cuda:0'), label 1: tensor(126, device='cuda:0') +[23:32:42.283] dice before refine 0.0 and after 0.8706004023551941, label 0: tensor(85, device='cuda:0'), label 1: tensor(33, device='cuda:0') +[23:32:42.660] dice before refine 0.0 and after 0.7435123920440674, label 0: tensor(0, device='cuda:0'), label 1: tensor(112, device='cuda:0') +[23:32:46.586] dice before refine 0.0 and after 0.8483647108078003, label 0: tensor(117, device='cuda:0'), label 1: tensor(32, device='cuda:0') +[23:32:46.956] dice before refine 0.0 and after 0.6552147269248962, label 0: tensor(0, device='cuda:0'), label 1: tensor(98, device='cuda:0') +[23:32:50.743] dice before refine 0.0 and after 0.8619102239608765, label 0: tensor(63, device='cuda:0'), label 1: tensor(36, device='cuda:0') +[23:32:51.121] dice before refine 0.0 and after 0.7563372850418091, label 0: tensor(0, device='cuda:0'), label 1: tensor(135, device='cuda:0') +[23:32:55.070] dice before refine 0.0 and after 0.8386433720588684, label 0: tensor(51, device='cuda:0'), label 1: tensor(44, device='cuda:0') +[23:32:55.448] dice before refine 0.0 and after 0.2758890986442566, label 0: tensor(0, device='cuda:0'), label 1: tensor(121, device='cuda:0') +[23:33:01.144] dice before refine 0.0030581040773540735 and after 0.8702502250671387, label 0: tensor(123, device='cuda:0'), label 1: tensor(23, device='cuda:0') +[23:33:01.535] dice before refine 0.0 and after 0.7190375328063965, label 0: tensor(0, device='cuda:0'), label 1: tensor(155, device='cuda:0') +[23:33:06.102] dice before refine 0.0015781167894601822 and after 0.8685612678527832, label 0: tensor(179, device='cuda:0'), label 1: tensor(32, device='cuda:0') +[23:33:06.775] epoch: 6/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.6922954348000613 stich left and right side (total size): 1 +[23:33:07.261] dice before refine 0.0 and after 0.6770908236503601, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:33:14.511] dice before refine 0.3676094710826874 and after 0.8743565082550049, label 0: tensor(346, device='cuda:0'), label 1: tensor(106, device='cuda:0') +[23:33:14.946] dice before refine 0.00016326530021615326 and after 0.6709035038948059, label 0: tensor(0, device='cuda:0'), label 1: tensor(492, device='cuda:0') +[23:33:22.224] dice before refine 0.43440285325050354 and after 0.8933351039886475, label 0: tensor(339, device='cuda:0'), label 1: tensor(114, device='cuda:0') +[23:33:22.644] dice before refine 0.0024639645125716925 and after 0.5369448661804199, label 0: tensor(0, device='cuda:0'), label 1: tensor(343, device='cuda:0') +[23:33:29.560] dice before refine 0.3656862676143646 and after 0.8661448955535889, label 0: tensor(231, device='cuda:0'), label 1: tensor(101, device='cuda:0') +[23:33:29.988] dice before refine 0.0 and after 0.5547902584075928, label 0: tensor(0, device='cuda:0'), label 1: tensor(453, device='cuda:0') +[23:33:37.060] dice before refine 0.3817089796066284 and after 0.8697621822357178, label 0: tensor(324, device='cuda:0'), label 1: tensor(117, device='cuda:0') +[23:33:37.598] dice before refine 0.43121469020843506 and after 0.33703938126564026, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:33:48.555] dice before refine 0.6350753903388977 and after 0.8416408896446228, label 0: tensor(506, device='cuda:0'), label 1: tensor(504, device='cuda:0') +[23:33:49.087] dice before refine 0.33133476972579956 and after 0.35652831196784973, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:33:59.730] dice before refine 0.6676807999610901 and after 0.8559686541557312, label 0: tensor(508, device='cuda:0'), label 1: tensor(502, device='cuda:0') +[23:34:00.252] dice before refine 0.16251030564308167 and after 0.3652637004852295, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:34:10.992] dice before refine 0.6492740511894226 and after 0.8656890392303467, label 0: tensor(509, device='cuda:0'), label 1: tensor(273, device='cuda:0') +[23:34:11.514] dice before refine 0.16161857545375824 and after 0.36286646127700806, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:34:22.100] dice before refine 0.6451520919799805 and after 0.8600566983222961, label 0: tensor(510, device='cuda:0'), label 1: tensor(273, device='cuda:0') +[23:34:22.706] epoch: 6/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.702048355882818 stich left and right side (total size): 1 +[23:34:23.217] dice before refine 0.8006832003593445 and after 0.7167272567749023, label 0: tensor(0, device='cuda:0'), label 1: tensor(150, device='cuda:0') +[23:34:27.813] dice before refine 0.8137419819831848 and after 0.9054550528526306, label 0: tensor(139, device='cuda:0'), label 1: tensor(46, device='cuda:0') +[23:34:28.192] dice before refine 0.8061880469322205 and after 0.7158779501914978, label 0: tensor(0, device='cuda:0'), label 1: tensor(137, device='cuda:0') +[23:34:32.745] dice before refine 0.807012140750885 and after 0.9050922393798828, label 0: tensor(116, device='cuda:0'), label 1: tensor(50, device='cuda:0') +[23:34:33.123] dice before refine 0.7235087752342224 and after 0.6280648708343506, label 0: tensor(0, device='cuda:0'), label 1: tensor(142, device='cuda:0') +[23:34:38.154] dice before refine 0.8319389224052429 and after 0.9046629071235657, label 0: tensor(162, device='cuda:0'), label 1: tensor(59, device='cuda:0') +[23:34:38.533] dice before refine 0.6922461986541748 and after 0.5520104765892029, label 0: tensor(0, device='cuda:0'), label 1: tensor(110, device='cuda:0') +[23:34:43.224] dice before refine 0.8273118734359741 and after 0.8765555620193481, label 0: tensor(178, device='cuda:0'), label 1: tensor(39, device='cuda:0') +[23:34:43.676] epoch: 6/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.8409092426300049 stich left and right side (total size): 1 +[23:34:44.212] dice before refine 0.0 and after 0.0923004224896431, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:34:53.021] dice before refine 0.4529256522655487 and after 0.9097163677215576, label 0: tensor(445, device='cuda:0'), label 1: tensor(287, device='cuda:0') +[23:34:53.528] dice before refine 0.0 and after 0.04199540987610817, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:35:02.357] dice before refine 0.5211910009384155 and after 0.9046224355697632, label 0: tensor(416, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:35:02.820] dice before refine 0.6953917145729065 and after 0.6130803823471069, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:35:11.735] dice before refine 0.8154881596565247 and after 0.9440842866897583, label 0: tensor(378, device='cuda:0'), label 1: tensor(133, device='cuda:0') +[23:35:12.214] dice before refine 0.7219282984733582 and after 0.6748161315917969, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:35:21.602] dice before refine 0.7976645827293396 and after 0.9350706934928894, label 0: tensor(506, device='cuda:0'), label 1: tensor(153, device='cuda:0') +[23:35:22.180] dice before refine 0.43966731429100037 and after 0.3049219846725464, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:35:32.947] dice before refine 0.6723085045814514 and after 0.80076664686203, label 0: tensor(501, device='cuda:0'), label 1: tensor(509, device='cuda:0') +[23:35:33.570] dice before refine 0.44417765736579895 and after 0.2600666284561157, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:35:44.120] dice before refine 0.6482936143875122 and after 0.741105854511261, label 0: tensor(441, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:35:44.575] dice before refine 0.296221524477005 and after 0.48155179619789124, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:35:52.857] dice before refine 0.6536476016044617 and after 0.8924158811569214, label 0: tensor(555, device='cuda:0'), label 1: tensor(117, device='cuda:0') +[23:35:53.285] dice before refine 0.07422802597284317 and after 0.4019607901573181, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +[23:36:01.074] dice before refine 0.6644598245620728 and after 0.8929039835929871, label 0: tensor(444, device='cuda:0'), label 1: tensor(88, device='cuda:0') +[23:36:01.594] epoch: 6/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.6719500422477722 stich left and right side (total size): 1 +[23:36:02.120] dice before refine 0.0 and after 0.012129860930144787, label 0: tensor(0, device='cuda:0'), label 1: tensor(15, device='cuda:0') +[23:36:05.182] dice before refine 0.0 and after 0.04652378335595131, label 0: tensor(28, device='cuda:0'), label 1: tensor(4, device='cuda:0') +[23:36:05.534] dice before refine 0.0 and after 0.1949685513973236, label 0: tensor(0, device='cuda:0'), label 1: tensor(21, device='cuda:0') +[23:36:08.666] dice before refine 0.0 and after 0.5864661931991577, label 0: tensor(31, device='cuda:0'), label 1: tensor(10, device='cuda:0') +[23:36:09.165] epoch: 6/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.4685451496731151 stich left and right side (total size): 1 +[23:36:09.166] - Val metrics mean dice: 0.6547432918070762 +[23:36:10.015] - Val metrics best mean dice: 0.6547432918070762 at epoch 6 +[23:36:32.107] epoch: 7/20, iter: 0/42: loss:2.8316: rank:-1 +[23:36:51.683] epoch: 7/20, iter: 1/42: loss:4.3542: rank:-1 +[23:37:03.338] epoch: 7/20, iter: 2/42: loss:1.1805: rank:-1 +[23:37:15.794] epoch: 7/20, iter: 3/42: loss:1.8346: rank:-1 +[23:37:30.474] epoch: 7/20, iter: 4/42: loss:4.4902: rank:-1 +[23:37:46.473] epoch: 7/20, iter: 5/42: loss:2.0822: rank:-1 +[23:37:57.149] epoch: 7/20, iter: 6/42: loss:2.8414: rank:-1 +[23:38:09.926] epoch: 7/20, iter: 7/42: loss:2.8429: rank:-1 +[23:38:27.830] epoch: 7/20, iter: 8/42: loss:1.4337: rank:-1 +[23:38:37.086] epoch: 7/20, iter: 9/42: loss:2.4516: rank:-1 +[23:38:46.983] epoch: 7/20, iter: 10/42: loss:2.0565: rank:-1 +[23:39:09.910] epoch: 7/20, iter: 11/42: loss:3.8302: rank:-1 +[23:39:30.406] epoch: 7/20, iter: 12/42: loss:2.6687: rank:-1 +[23:39:49.896] epoch: 7/20, iter: 13/42: loss:1.4811: rank:-1 +[23:40:03.204] epoch: 7/20, iter: 14/42: loss:1.106: rank:-1 +[23:40:20.138] epoch: 7/20, iter: 15/42: loss:1.3464: rank:-1 +[23:40:31.291] epoch: 7/20, iter: 16/42: loss:2.1344: rank:-1 +[23:40:52.395] epoch: 7/20, iter: 17/42: loss:1.4228: rank:-1 +[23:41:03.860] epoch: 7/20, iter: 18/42: loss:4.7278: rank:-1 +[23:41:27.204] epoch: 7/20, iter: 19/42: loss:2.2869: rank:-1 +[23:41:47.445] epoch: 7/20, iter: 20/42: loss:1.5162: rank:-1 +[23:42:04.363] epoch: 7/20, iter: 21/42: loss:1.8119: rank:-1 +[23:42:24.226] epoch: 7/20, iter: 22/42: loss:1.3441: rank:-1 +[23:42:48.859] epoch: 7/20, iter: 23/42: loss:2.516: rank:-1 +[23:43:05.679] epoch: 7/20, iter: 24/42: loss:1.7301: rank:-1 +[23:43:21.387] epoch: 7/20, iter: 25/42: loss:1.1302: rank:-1 +[23:43:31.541] epoch: 7/20, iter: 26/42: loss:3.0731: rank:-1 +[23:43:49.996] epoch: 7/20, iter: 27/42: loss:2.2905: rank:-1 +[23:44:04.160] epoch: 7/20, iter: 28/42: loss:1.568: rank:-1 +[23:44:29.016] epoch: 7/20, iter: 29/42: loss:3.4348: rank:-1 +[23:44:43.256] epoch: 7/20, iter: 30/42: loss:1.5196: rank:-1 +[23:44:53.407] epoch: 7/20, iter: 31/42: loss:3.7365: rank:-1 diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000000000000000000000000000000000000..3c3f886d6f945140826f4d32d8c218c05dcd5703 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,16 @@ +batchgenerators==0.25 +matplotlib==3.7.1 +MedPy==0.4.0 +monai==1.1.0 +nibabel==5.1.0 +numpy==1.24.3 +scipy==1.9.1 +scikit-image +nibabel +einops +pandas +torchio +prefetch-generator +connected-components-3d +kornia +opencv-python diff --git a/splits/README.md b/splits/README.md new file mode 100644 index 0000000000000000000000000000000000000000..14e1ad9eaf3d40eabe1bdb78430895a3d552b835 --- /dev/null +++ b/splits/README.md @@ -0,0 +1 @@ +this directory contains the data splits in our experiments diff --git a/splits/colon/split.pkl b/splits/colon/split.pkl new file mode 100644 index 0000000000000000000000000000000000000000..5b64e7be1eac54fb79e91afc8e116f587181f604 --- /dev/null +++ b/splits/colon/split.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5a740fec88f7ebeb88b4b416364adf6fbd3f91e6e7494bc8567ae08a0817950b +size 20829 diff --git a/splits/kits/split.pkl b/splits/kits/split.pkl new file mode 100644 index 0000000000000000000000000000000000000000..4c601e4c258a23d028ab66e54979682fa379aaef --- /dev/null +++ b/splits/kits/split.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:16366dcecac5e87349f320017520416738272848bdfec0807b95dad36b71382e +size 115818 diff --git a/splits/lits/split.pkl b/splits/lits/split.pkl new file mode 100644 index 0000000000000000000000000000000000000000..32b394dc06aff02720dbe5701ddda39b1fc4eb72 --- /dev/null +++ b/splits/lits/split.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:67bb0a58bb8a01029dd4aadeebf6a804cd13325472ae4e4a7d1ccddd7f5179c6 +size 49971 diff --git a/splits/pancreas/split.pkl b/splits/pancreas/split.pkl new file mode 100644 index 0000000000000000000000000000000000000000..682b28130d1a39c81b79159c55b81cd0f69b5196 --- /dev/null +++ b/splits/pancreas/split.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b3dc340acaf7ee0218d11864c84ccb5d90f48f786581e548c8b5e1b3a42dd4a7 +size 128678 diff --git a/src/config/__pycache__/config_args.cpython-312.pyc b/src/config/__pycache__/config_args.cpython-312.pyc new file mode 100644 index 0000000000000000000000000000000000000000..9b5e3a7112f1f0b7a7faf7ccb14a23232714d70d Binary files /dev/null and b/src/config/__pycache__/config_args.cpython-312.pyc differ diff --git a/src/config/__pycache__/config_args.cpython-39.pyc b/src/config/__pycache__/config_args.cpython-39.pyc new file mode 100644 index 0000000000000000000000000000000000000000..380437bd0ee20584cfd352e3e7643f850da71cc8 Binary files /dev/null and b/src/config/__pycache__/config_args.cpython-39.pyc differ diff --git a/src/config/__pycache__/config_setup.cpython-312.pyc b/src/config/__pycache__/config_setup.cpython-312.pyc new file mode 100644 index 0000000000000000000000000000000000000000..62de6ef883bcb66febb85730a395e81ce66bae9c Binary files /dev/null and b/src/config/__pycache__/config_setup.cpython-312.pyc differ diff --git a/src/config/__pycache__/config_setup.cpython-39.pyc b/src/config/__pycache__/config_setup.cpython-39.pyc new file mode 100644 index 0000000000000000000000000000000000000000..72395e65078a214a0d35e3f30d4d58086cb4d272 Binary files /dev/null and b/src/config/__pycache__/config_setup.cpython-39.pyc differ diff --git a/src/config/config_args.py b/src/config/config_args.py new file mode 100644 index 0000000000000000000000000000000000000000..6475633631c008f2ff788bc128bb6e273bf3cf19 --- /dev/null +++ b/src/config/config_args.py @@ -0,0 +1,78 @@ +import argparse +import os +import warnings +parser = argparse.ArgumentParser() + + +# data +parser.add_argument("--data", default=None, type=str, choices=["kits", "pancreas", "lits", "colon"]) +parser.add_argument("--save_dir", default="./implementation/", type=str) +parser.add_argument("--data_dir", default="", type=str) +parser.add_argument("--num_workers", default=2, type=int) +parser.add_argument("--split", default="train", type=str) +parser.add_argument('--use_small_dataset', action="store_true") + + +# network +parser.add_argument('--model_type', type=str, default='vit_b_ori') +parser.add_argument("--lr", default=4e-5, type=float) +parser.add_argument("--lr_scheduler", default='linear', type=str, choices=["linear", "exp"]) +parser.add_argument('--warm_up', action="store_true") +parser.add_argument("--device", default="cuda:0", type=str) +parser.add_argument("--max_epoch", default=200, type=int) +parser.add_argument("--image_size", default=128, type=int) +parser.add_argument("--batch_size", default=1, type=int) +parser.add_argument("--checkpoint", default="best", type=str) +parser.add_argument("--checkpoint_sam", default="./checkpoint_sam/sam_vit_b_01ec64.pth", type=str, + help='path of pretrained SAM') +parser.add_argument("--num_classes", default=2, type=int) +parser.add_argument("--tolerance", default=5, type=int) +parser.add_argument("--boundary_kernel_size", default=5, type=int, + help='an integer for kernel size of avepooling layer for boundary generation') +parser.add_argument("--use_pretrain", action="store_true") +parser.add_argument("--pretrain_path", default="", type=str) +parser.add_argument("--resume", action="store_true") +parser.add_argument("--resume_best", action="store_true") +parser.add_argument("--ddp", action="store_true") +parser.add_argument('--gpu_ids', type=int, nargs='+', default=[0, 1]) +parser.add_argument('--accumulation_steps', type=int, default=20) + +parser.add_argument('--iter_nums', type=int, default=11) +parser.add_argument('--num_clicks', type=int, default=50) +parser.add_argument('--num_clicks_validation', type=int, default=10) +parser.add_argument('--use_box', action="store_true") +parser.add_argument('--dynamic_box', action="store_true") +parser.add_argument('--use_scribble', action="store_true") + + +parser.add_argument('--num_multiple_outputs', type=int, default=3) +parser.add_argument('--multiple_outputs', action="store_true") +parser.add_argument('--refine', action="store_true") +parser.add_argument('--no_detach', action="store_true") +parser.add_argument('--refine_test', action="store_true") + +parser.add_argument('--dynamic', action="store_true") +parser.add_argument('--efficient_scribble', action="store_true") +parser.add_argument("--use_sam3d_turbo", action="store_true") + + + +# saving +parser.add_argument("--save_predictions", action="store_true") +parser.add_argument("--save_csv", action="store_true") +parser.add_argument("--save_test_dir", default='./', type=str) +parser.add_argument("--save_name", default='testing_only', type=str) + + + + + + +def check_and_setup_parser(args): + if args.save_name == 'testing_only': + warnings.warn("[save_name] (--save_name) should be a real name, currently is for testing purpose (--save_name=testing_only)") + + + args.save_dir = os.path.join(args.save_dir, args.data, args.save_name) + if not os.path.exists(args.save_dir): + os.makedirs(args.save_dir) diff --git a/src/config/config_setup.py b/src/config/config_setup.py new file mode 100644 index 0000000000000000000000000000000000000000..78820b50b4ccd0fa7b40cacb482c4e575ead979e --- /dev/null +++ b/src/config/config_setup.py @@ -0,0 +1,56 @@ +from src.models.build_sam3D import sam_model_registry3D +from src.dataset.dataloader import Dataset_promise, Dataloader_promise +import torchio as tio +from torch.nn.parallel import DistributedDataParallel as DDP +from torch.utils.data.distributed import DistributedSampler +import torch +def get_dataloader(args, split='', use_small=False): + transforms_list = [tio.ToCanonical(), tio.Resample(1), ] + if split == 'train': + transforms_list.append(tio.RandomFlip(axes=(0, 1, 2))) + + transforms = tio.Compose(transforms_list) + + dataset = Dataset_promise( + data=args.data, + data_dir=args.data_dir, + split=split, + transform=transforms, + image_size=args.image_size, + args=args, + ) + + batch_size = args.batch_size if split == 'train' else 1 + + if split == 'train': + train_sampler = None + shuffle = True + if args.ddp: + train_sampler = DistributedSampler(dataset) + shuffle = False + else: + train_sampler = None + shuffle = False + + pin_memory = True + if split != 'train' and args.data == 'lits': + pin_memory = False + + dataloader = Dataloader_promise( + dataset=dataset, + sampler=train_sampler, + batch_size=batch_size, + shuffle=shuffle, + num_workers=args.num_workers, + pin_memory=pin_memory, + ) + return dataloader + + + +def build_model(args, checkpoint=None): + sam_model = sam_model_registry3D[args.model_type](checkpoint=checkpoint, args=args).to(args.device) + if args.ddp: + sam_model = torch.nn.SyncBatchNorm.convert_sync_batchnorm(sam_model) + sam_model = DDP(sam_model, device_ids=[args.rank], output_device=args.rank) + return sam_model diff --git a/src/dataset/__pycache__/__init__.cpython-39.pyc b/src/dataset/__pycache__/__init__.cpython-39.pyc new file mode 100644 index 0000000000000000000000000000000000000000..96580e748357b0b59f7330d5afe380a0c55d16c2 Binary files /dev/null and b/src/dataset/__pycache__/__init__.cpython-39.pyc differ diff --git a/src/dataset/__pycache__/base_dataset_distance_map.cpython-39.pyc b/src/dataset/__pycache__/base_dataset_distance_map.cpython-39.pyc new file mode 100644 index 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0000000000000000000000000000000000000000..f9064e60fe14a2112e1cdea7009b80d11e84b72b Binary files /dev/null and b/src/dataset/__pycache__/datasets_distance_map.cpython-39.pyc differ diff --git a/src/dataset/dataloader.py b/src/dataset/dataloader.py new file mode 100644 index 0000000000000000000000000000000000000000..f1e06c0e41c72c99c7143c5effb8ff623f2a1f9a --- /dev/null +++ b/src/dataset/dataloader.py @@ -0,0 +1,265 @@ +from torch.utils.data import Dataset +from torch.utils.data import DataLoader +import torchio as tio +import pickle +import numpy as np +import os +import torch +import SimpleITK as sitk +from prefetch_generator import BackgroundGenerator +from monai.transforms import ( + Compose, + RandCropByPosNegLabeld, + ScaleIntensityRanged, + NormalizeIntensityd, + RandShiftIntensityd, + RandZoomd, +) +import cc3d, math + +class Dataset_promise(Dataset): + def __init__(self, data, data_dir, split='train', image_size=128, transform=None, pcc=False, args=None): + self.args = args + self.data = data + self.paths = data_dir + + self._set_file_paths(self.paths, split) + self._set_dataset_stat() + + self.image_size = (image_size, image_size, image_size) + self.transform = transform + self.threshold = 0 + self.split = split + self.pcc = pcc + self.monai_transforms = self._get_transforms(split=split) + + self.cc = 1 + + def __len__(self): + return len(self.label_paths) + + def __getitem__(self, index): + sitk_image = sitk.ReadImage(self.image_paths[index]) + sitk_label = sitk.ReadImage(self.label_paths[index]) + + if sitk_image.GetOrigin() != sitk_label.GetOrigin(): + sitk_image.SetOrigin(sitk_label.GetOrigin()) + if sitk_image.GetDirection() != sitk_label.GetDirection(): + sitk_image.SetDirection(sitk_label.GetDirection()) + + if sitk_image.GetSpacing() != sitk_label.GetSpacing(): + sitk_label.SetSpacing(sitk_image.GetSpacing()) + + subject = tio.Subject( + image=tio.ScalarImage.from_sitk(sitk_image), + label=tio.LabelMap.from_sitk(sitk_label), + ) + + subject_save = tio.Subject( + image=tio.ScalarImage.from_sitk(sitk_image), + label=tio.LabelMap.from_sitk(sitk_label), + ) + + + if self.data == 'lits': + b = subject.label.data + a = tio.CropOrPad._bbox_mask(b[0].cpu().numpy()) + w, h, d = a[1][0] - a[0][0], a[1][1] - a[0][1], a[1][2] - a[0][2] + w, h, d = max(w + 20, 128), max(h + 20, 128), max(d + 20, 128) + crop_transform = tio.CropOrPad(mask_name='label', target_shape=(w, h, d)) + subject = crop_transform(subject) + subject_save = crop_transform(subject_save) + + + + if self.target_label != 0: + subject = self._binary_label(subject) + subject_save = self._binary_label(subject_save) + + if self.transform: + try: + subject = self.transform(subject) + subject_save = self.transform(subject_save) + except: + print(self.image_paths[index]) + + if (self.pcc): + subject = self._pcc(subject) + + + if subject.label.data.sum() <= self.threshold: + print(self.image_paths[index], 'label volume too small') + if self.split == 'train': + return self.__getitem__(np.random.randint(self.__len__())) + #return self.__getitem__(0) + else: + if self.data == 'lits': + return subject, self.image_paths[index] + else: + return subject.image.data.clone().detach(), subject.label.data.clone().detach(), self.image_paths[index] + + + if self.split == "train": + trans_dict = self.monai_transforms({"image": subject.image.data.clone().detach(), + "label": subject.label.data.clone().detach()})[0] + img_aug, seg_aug = trans_dict["image"], trans_dict["label"] + return img_aug.float(), seg_aug.float(), self.image_paths[index] + else: + if self.data == 'lits': + trans_dict = self.monai_transforms({"image": subject.image.data.clone().detach()}) + subject.image.data = trans_dict["image"] + return subject, self.image_paths[index], subject_save + + if self.data == 'kits': + subject = self._separate_crop(subject) + + crop_transform = tio.CropOrPad(mask_name='label', target_shape=self.image_size) + subject = crop_transform(subject) + subject_save = crop_transform(subject_save) + + trans_dict = self.monai_transforms({"image": subject.image.data.clone().detach()}) + img_aug = trans_dict["image"] + return img_aug, subject.label.data.clone().detach(), self.image_paths[index], subject_save + + + def _separate_crop(self, subject): + label = subject.label.data + labels_out, N = cc3d.connected_components(label[0].cpu().numpy(), return_N=True) + crop_transform = tio.CropOrPad(mask_name='label', target_shape=self.image_size) + mid_cut = 0 + + if N > 1: + label_1, label_2 = torch.zeros_like(label), torch.zeros_like(label) + + # left, right + mid_cut = math.ceil(label.size(1) / 2) + label_1[0, 0: mid_cut, :], label_2[0, mid_cut: -1, :] = label[0, 0: mid_cut, :], label[0, mid_cut: -1, :] # left, right + + + image_1, image_2 = subject.image.data, subject.image.data + + subject_1 = tio.Subject(image=tio.ScalarImage(tensor=image_1), label=tio.LabelMap(tensor=label_1)) + subject_2 = tio.Subject(image=tio.ScalarImage(tensor=image_2), label=tio.LabelMap(tensor=label_2)) + + subject_1, subject_2 = crop_transform(subject_1), crop_transform(subject_2) + + # found 2 connected components for some cases (e.g. case 289), use below to eliminate + # however, this will bring warnings, but it's okay + if torch.unique(subject_2.label.data).size(0) == 1: + subject.image.data, subject.label.data = subject_1.image.data, subject_1.label.data + elif torch.unique(subject_1.label.data).size(0) == 1: + subject.image.data, subject.label.data = subject_2.image.data, subject_2.label.data + else: + subject.image.data = torch.cat([subject_1.image.data, subject_2.image.data], dim=0) + subject.label.data = torch.cat([subject_1.label.data, subject_2.label.data], dim=0) + else: + subject = crop_transform(subject) + + return subject + + def _set_file_paths(self, data_dir, split): + self.image_paths = [] + self.label_paths = [] + split_file = "split.pkl" + dataset_split = os.path.join(data_dir, split_file) + if not os.path.exists(dataset_split): + alt_dir = os.path.join(data_dir, "Task01_LITS17") + alt_split = os.path.join(alt_dir, split_file) + if os.path.exists(alt_split): + data_dir = alt_dir + dataset_split = alt_split + if not os.path.exists(dataset_split): + raise FileNotFoundError(f"split.pkl not found under {data_dir}") + with open(dataset_split, "rb") as f: + d = pickle.load(f)[0][split] + self.image_paths = [os.path.join(data_dir, d[i][0].strip("/")) for i in list(d.keys())] + self.label_paths = [os.path.join(data_dir, d[i][1].strip("/")) for i in list(d.keys())] + + def _set_dataset_stat(self): + self.target_label = 0 + if self.data == 'colon': + self.intensity_range, self.global_mean, self.global_std = (-57, 175), 65.175035, 32.651197 + + elif self.data == 'pancreas': + self.intensity_range, self.global_mean, self.global_std = (-39, 204), 68.45214, 63.422806 + self.target_label = 2 + + elif self.data == 'lits': + self.intensity_range, self.global_mean, self.global_std = (-48, 163), 60.057533, 40.198017 + self.target_label = 2 + + elif self.data == 'kits': + self.intensity_range, self.global_mean, self.global_std = (-54, 247), 59.53867, 55.457336 + self.target_label = 2 + + + def _get_transforms(self, split): + if split == "train": + transforms = Compose( + [ + ScaleIntensityRanged( + keys=["image"], + a_min=self.intensity_range[0], + a_max=self.intensity_range[1], + b_min=self.intensity_range[0], + b_max=self.intensity_range[1], + clip=True, + ), + RandCropByPosNegLabeld( + keys=["image", "label"], + spatial_size=(128, 128, 128), + label_key="label", + pos=2, + neg=0, + num_samples=1, + ), + RandShiftIntensityd(keys=["image"], offsets=20, prob=0.5), + NormalizeIntensityd(keys=["image"], subtrahend=self.global_mean, divisor=self.global_std), + + RandZoomd(keys=["image", "label"], prob=0.8, min_zoom=0.85, max_zoom=1.25, + mode=["trilinear", "nearest"]), + ]) + else: + transforms = Compose( + [ + ScaleIntensityRanged( + keys=["image"], + a_min=self.intensity_range[0], + a_max=self.intensity_range[1], + b_min=self.intensity_range[0], + b_max=self.intensity_range[1], + clip=True, + ), + NormalizeIntensityd(keys=["image"], subtrahend=self.global_mean, divisor=self.global_std), + ] + ) + return transforms + + def _binary_label(self, subject): + label = subject.label.data + label = (label == self.target_label) + subject.label.data = label.float() + return subject + + def _pcc(self, subject): + print("using pcc setting") + # crop from random click point + random_index = torch.argwhere(subject.label.data == 1) + if (len(random_index) >= 1): + random_index = random_index[np.random.randint(0, len(random_index))] + # print(random_index) + crop_mask = torch.zeros_like(subject.label.data) + # print(crop_mask.shape) + crop_mask[random_index[0]][random_index[1]][random_index[2]][random_index[3]] = 1 + subject.add_image(tio.LabelMap(tensor=crop_mask, affine=subject.label.affine), image_name="crop_mask") + subject = tio.CropOrPad(mask_name='crop_mask', target_shape=self.image_size)(subject) + + return subject + + +class Dataloader_promise(DataLoader): + def __iter__(self): + return BackgroundGenerator(super().__iter__()) + + + diff --git a/src/implementation/colon/readme.log b/src/implementation/colon/readme.log new file mode 100644 index 0000000000000000000000000000000000000000..cccdd0340abbb38e296db19a2deceedfce45d54c --- /dev/null +++ b/src/implementation/colon/readme.log @@ -0,0 +1 @@ +put pretrained prism in this directory diff --git a/src/implementation/kits/readme.log b/src/implementation/kits/readme.log new file mode 100644 index 0000000000000000000000000000000000000000..cccdd0340abbb38e296db19a2deceedfce45d54c --- /dev/null +++ b/src/implementation/kits/readme.log @@ -0,0 +1 @@ +put pretrained prism in this directory diff --git a/src/implementation/lits/readme.log b/src/implementation/lits/readme.log new file mode 100644 index 0000000000000000000000000000000000000000..cccdd0340abbb38e296db19a2deceedfce45d54c --- /dev/null +++ b/src/implementation/lits/readme.log @@ -0,0 +1 @@ +put pretrained prism in this directory diff --git a/src/implementation/pancreas/readme.log b/src/implementation/pancreas/readme.log new file mode 100644 index 0000000000000000000000000000000000000000..cccdd0340abbb38e296db19a2deceedfce45d54c --- /dev/null +++ b/src/implementation/pancreas/readme.log @@ -0,0 +1 @@ +put pretrained prism in this directory diff --git a/src/models/__pycache__/build_sam3D.cpython-312.pyc b/src/models/__pycache__/build_sam3D.cpython-312.pyc new file mode 100644 index 0000000000000000000000000000000000000000..35d330da27ab4205038f012215806dc623d0a5bb Binary files /dev/null and b/src/models/__pycache__/build_sam3D.cpython-312.pyc differ diff --git a/src/models/__pycache__/build_sam3D.cpython-39.pyc b/src/models/__pycache__/build_sam3D.cpython-39.pyc new file mode 100644 index 0000000000000000000000000000000000000000..ccea7d330964119dc460004749c50b542547ec4f Binary files /dev/null and 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b/src/models/__pycache__/unet.cpython-39.pyc new file mode 100644 index 0000000000000000000000000000000000000000..48f7eb6a5b82659ee36033ec6767efa00c7149c3 Binary files /dev/null and b/src/models/__pycache__/unet.cpython-39.pyc differ diff --git a/src/models/build_sam3D.py b/src/models/build_sam3D.py new file mode 100644 index 0000000000000000000000000000000000000000..bfbf5338e7f3b16764c59df523c92c33b62a61d6 --- /dev/null +++ b/src/models/build_sam3D.py @@ -0,0 +1,130 @@ +import torch +from functools import partial +from . import image_encoder, prompt_encoder, mask_decoder, sam3D, segmamba_encoder + + +def build_sam3D_vit_b_ori(args=None, checkpoint=None): + return _build_sam3D_ori( + encoder_embed_dim=768, + encoder_depth=12, + encoder_num_heads=12, + encoder_global_attn_indexes=[2, 5, 8, 11], + checkpoint=checkpoint, + args=args, + ) + + +def build_sam3D_segmamba(args=None, checkpoint=None): + return _build_sam3D_segmamba( + checkpoint=checkpoint, + args=args, + ) + +sam_model_registry3D = { + "vit_b_ori": build_sam3D_vit_b_ori, + "segmamba": build_sam3D_segmamba, +} + + +def _build_sam3D_ori( + encoder_embed_dim, + encoder_depth, + encoder_num_heads, + encoder_global_attn_indexes, + checkpoint=None, + args=None, +): + prompt_embed_dim = 384 + image_size = args.image_size + vit_patch_size = 16 + image_embedding_size = image_size // vit_patch_size + sam = sam3D.Sam3D( + image_encoder=image_encoder.ImageEncoderViT( + args, + depth=encoder_depth, + embed_dim=encoder_embed_dim, + img_size=image_size, + mlp_ratio=4, + norm_layer=partial(torch.nn.LayerNorm, eps=1e-6), + num_heads=encoder_num_heads, + patch_size=vit_patch_size, + qkv_bias=True, + use_rel_pos=True, + global_attn_indexes=encoder_global_attn_indexes, + window_size=14, + out_chans=prompt_embed_dim, + ), + + prompt_encoder=prompt_encoder.PromptEncoder3D( + embed_dim=prompt_embed_dim, + image_embedding_size=(image_embedding_size, image_embedding_size, image_embedding_size), + input_image_size=(image_size, image_size, image_size), + mask_in_chans=16, + num_multiple_outputs=args.num_multiple_outputs, + multiple_outputs=args.multiple_outputs, + ), + + mask_decoder=mask_decoder.MaskDecoder3D( + args, + transformer_dim=prompt_embed_dim, + num_multiple_outputs=args.num_multiple_outputs, + multiple_outputs=args.multiple_outputs, + ), + + ) + sam.eval() + if checkpoint is not None: + with open(checkpoint, "rb") as f: + state_dict = torch.load(f, map_location=args.device) + if args.use_sam3d_turbo and args.split == 'train': + # Initialize a new state dictionary for the image_encoder + encoder_state_dict = {} + for key in state_dict['model_state_dict']: + if key.startswith( + 'image_encoder.'): # Adjust 'image_encoder.' based on how the keys are named in your state_dict + # Remove the 'image_encoder.' prefix and save the modified key + new_key = key[len('image_encoder.'):] + encoder_state_dict[new_key] = state_dict['model_state_dict'][key] + # Now load the adjusted state dict into the image_encoder part of your model + sam.image_encoder.load_state_dict(encoder_state_dict, strict=False) + else: + sam.load_state_dict(state_dict['model_state_dict']) + + return sam + + +def _build_sam3D_segmamba( + checkpoint=None, + args=None, +): + prompt_embed_dim = 384 + image_size = args.image_size + image_embedding_size = image_size // 16 + sam = sam3D.Sam3D( + image_encoder=segmamba_encoder.ImageEncoderSegMamba( + args, + img_size=image_size, + in_chans=1, + embed_dim=prompt_embed_dim, + ), + prompt_encoder=prompt_encoder.PromptEncoder3D( + embed_dim=prompt_embed_dim, + image_embedding_size=(image_embedding_size, image_embedding_size, image_embedding_size), + input_image_size=(image_size, image_size, image_size), + mask_in_chans=16, + num_multiple_outputs=args.num_multiple_outputs, + multiple_outputs=args.multiple_outputs, + ), + mask_decoder=mask_decoder.MaskDecoder3D( + args, + transformer_dim=prompt_embed_dim, + num_multiple_outputs=args.num_multiple_outputs, + multiple_outputs=args.multiple_outputs, + ), + ) + sam.eval() + if checkpoint is not None: + with open(checkpoint, "rb") as f: + state_dict = torch.load(f, map_location=args.device) + sam.load_state_dict(state_dict["model_state_dict"], strict=False) + return sam diff --git a/src/models/image_encoder.py b/src/models/image_encoder.py new file mode 100644 index 0000000000000000000000000000000000000000..3f87839dcb739d287b89256d1e40d9070a7a2340 --- /dev/null +++ b/src/models/image_encoder.py @@ -0,0 +1,500 @@ +# Copyright (c) Meta Platforms, Inc. and affiliates. +# All rights reserved. + +# This source code is licensed under the license found in the +# LICENSE file in the root directory of this source tree. + +import torch +import torch.nn as nn +import torch.nn.functional as F + +from typing import Optional, Tuple, Type +from .unet import Unet_encoder + +class MLPBlock(nn.Module): + def __init__( + self, + embedding_dim: int, + mlp_dim: int, + act: Type[nn.Module] = nn.GELU, + ) -> None: + super().__init__() + self.lin1 = nn.Linear(embedding_dim, mlp_dim) + self.lin2 = nn.Linear(mlp_dim, embedding_dim) + self.act = act() + + def forward(self, x: torch.Tensor) -> torch.Tensor: + return self.lin2(self.act(self.lin1(x))) + + +class LayerNorm3d(nn.Module): + def __init__(self, num_channels: int, eps: float = 1e-6) -> None: + super().__init__() + self.weight = nn.Parameter(torch.ones(num_channels)) + self.bias = nn.Parameter(torch.zeros(num_channels)) + self.eps = eps + + def forward(self, x: torch.Tensor) -> torch.Tensor: + u = x.mean(1, keepdim=True) + s = (x - u).pow(2).mean(1, keepdim=True) + x = (x - u) / torch.sqrt(s + self.eps) + x = self.weight[:, None, None, None] * x + self.bias[:, None, None, None] + return x + + +# This class and its supporting functions below lightly adapted from the ViTDet backbone available at: https://github.com/facebookresearch/detectron2/blob/main/detectron2/modeling/backbone/vit.py # noqa +class ImageEncoderViT(nn.Module): + def __init__( + self, args, + img_size: int = 256, + patch_size: int = 16, + in_chans: int = 1, + embed_dim: int = 768, + depth: int = 12, + num_heads: int = 12, + mlp_ratio: float = 4.0, + out_chans: int = 256, + qkv_bias: bool = True, + norm_layer: Type[nn.Module] = nn.LayerNorm, + act_layer: Type[nn.Module] = nn.GELU, + use_abs_pos: bool = True, + use_rel_pos: bool = False, + rel_pos_zero_init: bool = True, + window_size: int = 0, + global_attn_indexes: Tuple[int, ...] = (), + ) -> None: + """ + Args: + img_size (int): Input image size. + patch_size (int): Patch size. + in_chans (int): Number of input image channels. + embed_dim (int): Patch embedding dimension. + depth (int): Depth of ViT. + num_heads (int): Number of attention heads in each ViT block. + mlp_ratio (float): Ratio of mlp hidden dim to embedding dim. + qkv_bias (bool): If True, add a learnable bias to query, key, value. + norm_layer (nn.Module): Normalization layer. + act_layer (nn.Module): Activation layer. + use_abs_pos (bool): If True, use absolute positional embeddings. + use_rel_pos (bool): If True, add relative positional embeddings to the attention map. + rel_pos_zero_init (bool): If True, zero initialize relative positional parameters. + window_size (int): Window size for window attention blocks. + global_attn_indexes (list): Indexes for blocks using global attention. + """ + super().__init__() + self.args = args + + self.img_size = img_size + + self.patch_embed = PatchEmbed3D( + kernel_size=(patch_size, patch_size, patch_size), + stride=(patch_size, patch_size, patch_size), + in_chans=in_chans, + embed_dim=embed_dim, + ) + + self.pos_embed: Optional[nn.Parameter] = None + if use_abs_pos: + # Initialize absolute positional embedding with pretrain image size. + self.pos_embed = nn.Parameter( + torch.zeros(1, img_size // patch_size, img_size // patch_size, img_size // patch_size, embed_dim) + ) + + self.blocks = nn.ModuleList() + for i in range(depth): + block = Block3D( + dim=embed_dim, + num_heads=num_heads, + mlp_ratio=mlp_ratio, + qkv_bias=qkv_bias, + norm_layer=norm_layer, + act_layer=act_layer, + use_rel_pos=use_rel_pos, + rel_pos_zero_init=rel_pos_zero_init, + window_size=window_size if i not in global_attn_indexes else 0, + input_size=(img_size // patch_size, img_size // patch_size, img_size // patch_size), + ) + self.blocks.append(block) + + if self.args.use_sam3d_turbo: + self.neck = nn.Sequential( + nn.Conv3d( + embed_dim, + out_chans, + kernel_size=1, + bias=False, + ), + LayerNorm3d(out_chans), + nn.Conv3d( + out_chans, + out_chans, + kernel_size=3, + padding=1, + bias=False, + ), + LayerNorm3d(out_chans), + ) + else: + self.neck = nn.Sequential( + nn.Conv3d(embed_dim, out_chans, kernel_size=1, bias=False), LayerNorm3d(out_chans), nn.GELU(), + nn.Conv3d(out_chans, out_chans, kernel_size=3, padding=1, bias=False), LayerNorm3d(out_chans), + nn.GELU(), + ) + + + self.neck_list = nn.ModuleList() + + # if self.args.use_sam3d_turbo: + # last_feature = 48 + # else: + # last_feature = 32 + + features = (768, 128, 64, 32) + for i in reversed(range(len(features) - 1)): + self.neck_list.append(Upsampling(features=features, up_inters=i+1)) + + self.cnn_encoder = Unet_encoder(spatial_dims=3, in_channels=1, features=(32, 32, 64, 128, 384, 32)) + + def forward(self, x: torch.Tensor): + feature_list = [] + x4, x3, x2, x1, x0 = self.cnn_encoder(x) + feature_list.append(x0) + + x = self.patch_embed(x) + if self.pos_embed is not None: + x = x + self.pos_embed + + idx = 0 + for blk in self.blocks: + x = blk(x) + idx += 1 + if idx % 3 == 0 and idx != 12: + # a = self.neck_list[idx//3-1](x.permute(0, 4, 1, 2, 3)) + feature_list.append(self.neck_list[idx//3-1](x.permute(0, 4, 1, 2, 3)) + [x1, x2, x3][idx//3-1]) + # x = [1,16,16,16,768] + x = self.neck(x.permute(0, 4, 1, 2, 3)) + + # output_size = [1,256,16,16,16] + x = x + x4 + # feature_list = feature_list + [x1, x2, x3] + return x, feature_list + + +class Single_up(nn.Sequential): + def __init__(self, in_channels=768, out_channels=32): + super().__init__() + self.single_up = nn.Sequential( + nn.Conv3d(in_channels, out_channels, 3, padding=1, bias=False), + LayerNorm3d(out_channels), + nn.GELU(), + nn.ConvTranspose3d(out_channels, out_channels, 2, stride=2), + LayerNorm3d(out_channels), + nn.GELU(), + ) + + +class Upsampling(nn.Module): + def __init__(self, features=(768, 128, 64, 32), up_inters=1): + super(Upsampling, self).__init__() + self.up = nn.ModuleList() + for i in range(up_inters): + self.up.append( + Single_up(in_channels=features[i], out_channels=features[i + 1]) + ) + + def forward(self, x): + for module in self.up: + x = module(x) + return x + + +class Block3D(nn.Module): + """Transformer blocks with support of window attention and residual propagation blocks""" + + def __init__( + self, + dim: int, + num_heads: int, + mlp_ratio: float = 4.0, + qkv_bias: bool = True, + norm_layer: Type[nn.Module] = nn.LayerNorm, + act_layer: Type[nn.Module] = nn.GELU, + use_rel_pos: bool = False, + rel_pos_zero_init: bool = True, + window_size: int = 0, + input_size: Optional[Tuple[int, int, int]] = None, + ) -> None: + """ + Args: + dim (int): Number of input channels. + num_heads (int): Number of attention heads in each ViT block. + mlp_ratio (float): Ratio of mlp hidden dim to embedding dim. + qkv_bias (bool): If True, add a learnable bias to query, key, value. + norm_layer (nn.Module): Normalization layer. + act_layer (nn.Module): Activation layer. + use_rel_pos (bool): If True, add relative positional embeddings to the attention map. + rel_pos_zero_init (bool): If True, zero initialize relative positional parameters. + window_size (int): Window size for window attention blocks. If it equals 0, then + use global attention. + input_size (tuple(int, int) or None): Input resolution for calculating the relative + positional parameter size. + """ + super().__init__() + self.norm1 = norm_layer(dim) + self.attn = Attention( + dim, + num_heads=num_heads, + qkv_bias=qkv_bias, + use_rel_pos=use_rel_pos, + rel_pos_zero_init=rel_pos_zero_init, + input_size=input_size if window_size == 0 else (window_size, window_size, window_size), + ) + + self.norm2 = norm_layer(dim) + self.mlp = MLPBlock(embedding_dim=dim, mlp_dim=int(dim * mlp_ratio), act=act_layer) + + self.window_size = window_size + + def forward(self, x: torch.Tensor) -> torch.Tensor: + shortcut = x + x = self.norm1(x) + # Window partition + if self.window_size > 0: + D, H, W = x.shape[1], x.shape[2], x.shape[3] + x, pad_dhw = window_partition3D(x, self.window_size) + + x = self.attn(x) + # Reverse window partition + if self.window_size > 0: + x = window_unpartition3D(x, self.window_size, pad_dhw, (D, H, W)) + + x = shortcut + x + x = x + self.mlp(self.norm2(x)) + + return x + + +class Attention(nn.Module): + """Multi-head Attention block with relative position embeddings.""" + + def __init__( + self, + dim: int, + num_heads: int = 8, + qkv_bias: bool = True, + use_rel_pos: bool = False, + rel_pos_zero_init: bool = True, + input_size: Optional[Tuple[int, int, int]] = None, + ) -> None: + """ + Args: + dim (int): Number of input channels. + num_heads (int): Number of attention heads. + qkv_bias (bool): If True, add a learnable bias to query, key, value. + rel_pos (bool): If True, add relative positional embeddings to the attention map. + rel_pos_zero_init (bool): If True, zero initialize relative positional parameters. + input_size (tuple(int, int) or None): Input resolution for calculating the relative + positional parameter size. + """ + super().__init__() + self.num_heads = num_heads + head_dim = dim // num_heads + self.scale = head_dim ** -0.5 + + self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias) + self.proj = nn.Linear(dim, dim) + + self.use_rel_pos = use_rel_pos + if self.use_rel_pos: + assert ( + input_size is not None + ), "Input size must be provided if using relative positional encoding." + # initialize relative positional embeddings + self.rel_pos_d = nn.Parameter(torch.zeros(2 * input_size[0] - 1, head_dim)) + self.rel_pos_h = nn.Parameter(torch.zeros(2 * input_size[1] - 1, head_dim)) + self.rel_pos_w = nn.Parameter(torch.zeros(2 * input_size[2] - 1, head_dim)) + + def forward(self, x: torch.Tensor) -> torch.Tensor: + B, D, H, W, _ = x.shape + # qkv with shape (3, B, nHead, H * W, C) + qkv = self.qkv(x).reshape(B, D * H * W, 3, self.num_heads, -1).permute(2, 0, 3, 1, 4) + # q, k, v with shape (B * nHead, H * W, C) + q, k, v = qkv.reshape(3, B * self.num_heads, D * H * W, -1).unbind(0) + + attn = (q * self.scale) @ k.transpose(-2, -1) + + if self.use_rel_pos: + attn = add_decomposed_rel_pos(attn, q, self.rel_pos_d, self.rel_pos_h, self.rel_pos_w, (D, H, W), (D, H, W)) + + attn = attn.softmax(dim=-1) + x = (attn @ v).view(B, self.num_heads, D, H, W, -1).permute(0, 2, 3, 4, 1, 5).reshape(B, D, H, W, -1) + x = self.proj(x) + + return x + + +def window_partition3D(x: torch.Tensor, window_size: int) -> Tuple[torch.Tensor, Tuple[int, int, int]]: + """ + Partition into non-overlapping windows with padding if needed. + Args: + x (tensor): input tokens with [B, H, W, C]. + window_size (int): window size. + + Returns: + windows: windows after partition with [B * num_windows, window_size, window_size, C]. + (Hp, Wp): padded height and width before partition + """ + B, D, H, W, C = x.shape + + pad_d = (window_size - D % window_size) % window_size + pad_h = (window_size - H % window_size) % window_size + pad_w = (window_size - W % window_size) % window_size + + if pad_h > 0 or pad_w > 0 or pad_d > 0: + x = F.pad(x, (0, 0, 0, pad_w, 0, pad_h, 0, pad_d)) + Hp, Wp, Dp = H + pad_h, W + pad_w, D + pad_d + + x = x.view(B, Dp // window_size, window_size, Hp // window_size, window_size, Wp // window_size, window_size, C) + windows = x.permute(0, 1, 3, 5, 2, 4, 6, 7).contiguous().view(-1, window_size, window_size, window_size, C) + return windows, (Dp, Hp, Wp) + + +def window_unpartition3D( + windows: torch.Tensor, window_size: int, pad_dhw: Tuple[int, int, int], dhw: Tuple[int, int, int] +) -> torch.Tensor: + """ + Window unpartition into original sequences and removing padding. + Args: + windows (tensor): input tokens with [B * num_windows, window_size, window_size, C]. + window_size (int): window size. + pad_hw (Tuple): padded height and width (Hp, Wp). + hw (Tuple): original height and width (H, W) before padding. + + Returns: + x: unpartitioned sequences with [B, H, W, C]. + """ + Dp, Hp, Wp = pad_dhw + D, H, W = dhw + B = windows.shape[0] // (Dp * Hp * Wp // window_size // window_size // window_size) + x = windows.view(B, Dp // window_size, Hp // window_size, Wp // window_size, window_size, window_size, window_size, + -1) + x = x.permute(0, 1, 4, 2, 5, 3, 6, 7).contiguous().view(B, Hp, Wp, Dp, -1) + + if Hp > H or Wp > W or Dp > D: + x = x[:, :D, :H, :W, :].contiguous() + return x + + +def get_rel_pos(q_size: int, k_size: int, rel_pos: torch.Tensor) -> torch.Tensor: + """ + Get relative positional embeddings according to the relative positions of + query and key sizes. + Args: + q_size (int): size of query q. + k_size (int): size of key k. + rel_pos (Tensor): relative position embeddings (L, C). + + Returns: + Extracted positional embeddings according to relative positions. + """ + max_rel_dist = int(2 * max(q_size, k_size) - 1) + # Interpolate rel pos if needed. + if rel_pos.shape[0] != max_rel_dist: + # Interpolate rel pos. + rel_pos_resized = F.interpolate( + rel_pos.reshape(1, rel_pos.shape[0], -1).permute(0, 2, 1), + size=max_rel_dist, + mode="linear", + ) + rel_pos_resized = rel_pos_resized.reshape(-1, max_rel_dist).permute(1, 0) + else: + rel_pos_resized = rel_pos + + # Scale the coords with short length if shapes for q and k are different. + q_coords = torch.arange(q_size)[:, None] * max(k_size / q_size, 1.0) + k_coords = torch.arange(k_size)[None, :] * max(q_size / k_size, 1.0) + relative_coords = (q_coords - k_coords) + (k_size - 1) * max(q_size / k_size, 1.0) + + return rel_pos_resized[relative_coords.long()] + + +def add_decomposed_rel_pos( + attn: torch.Tensor, + q: torch.Tensor, + rel_pos_d: torch.Tensor, + rel_pos_h: torch.Tensor, + rel_pos_w: torch.Tensor, + q_size: Tuple[int, int, int], + k_size: Tuple[int, int, int], +) -> torch.Tensor: + """ + Calculate decomposed Relative Positional Embeddings from :paper:`mvitv2`. + https://github.com/facebookresearch/mvit/blob/19786631e330df9f3622e5402b4a419a263a2c80/mvit/models/attention.py # noqa B950 + Args: + attn (Tensor): attention map. + q (Tensor): query q in the attention layer with shape (B, q_h * q_w, C). + rel_pos_h (Tensor): relative position embeddings (Lh, C) for height axis. + rel_pos_w (Tensor): relative position embeddings (Lw, C) for width axis. + q_size (Tuple): spatial sequence size of query q with (q_h, q_w). + k_size (Tuple): spatial sequence size of key k with (k_h, k_w). + + Returns: + attn (Tensor): attention map with added relative positional embeddings. + """ + q_d, q_h, q_w = q_size + k_d, k_h, k_w = k_size + + Rd = get_rel_pos(q_d, k_d, rel_pos_d) + Rh = get_rel_pos(q_h, k_h, rel_pos_h) + Rw = get_rel_pos(q_w, k_w, rel_pos_w) + + B, _, dim = q.shape + r_q = q.reshape(B, q_d, q_h, q_w, dim) + + rel_d = torch.einsum("bdhwc,dkc->bdhwk", r_q, Rd) + rel_h = torch.einsum("bdhwc,hkc->bdhwk", r_q, Rh) + rel_w = torch.einsum("bdhwc,wkc->bdhwk", r_q, Rw) + + attn = ( + attn.view(B, q_d, q_h, q_w, k_d, k_h, k_w) + rel_d[:, :, :, :, None, None] + rel_h[:, :, :, None, :, + None] + rel_w[:, :, :, None, + None, :] + ).view(B, q_d * q_h * q_w, k_d * k_h * k_w) + + return attn + + +class PatchEmbed3D(nn.Module): + """ + Image to Patch Embedding. + """ + + def __init__( + self, + kernel_size: Tuple[int, int] = (16, 16, 16), + stride: Tuple[int, int] = (16, 16, 16), + padding: Tuple[int, int] = (0, 0, 0), + in_chans: int = 1, + embed_dim: int = 768, + ) -> None: + """ + Args: + kernel_size (Tuple): kernel size of the projection layer. + stride (Tuple): stride of the projection layer. + padding (Tuple): padding size of the projection layer. + in_chans (int): Number of input image channels. + embed_dim (int): Patch embedding dimension. + """ + super().__init__() + + self.proj = nn.Conv3d( + in_chans, embed_dim, kernel_size=kernel_size, stride=stride, padding=padding + ) + + def forward(self, x: torch.Tensor) -> torch.Tensor: + x = self.proj(x) + # B C X Y Z -> B X Y Z C + x = x.permute(0, 2, 3, 4, 1) + return x + + diff --git a/src/models/mask_decoder.py b/src/models/mask_decoder.py new file mode 100644 index 0000000000000000000000000000000000000000..52b0c57d489feb31bf76981bd97b047a3448ad14 --- /dev/null +++ b/src/models/mask_decoder.py @@ -0,0 +1,194 @@ +import torch +import torch.nn as nn +from torch.nn import functional as F +from typing import List, Tuple, Type, Union +from .unet import Unet_decoder, Conv, TwoConv +from monai.networks.nets import UNet + + +class LayerNorm3d(nn.Module): + def __init__(self, num_channels: int, eps: float = 1e-6) -> None: + super().__init__() + self.weight = nn.Parameter(torch.ones(num_channels)) + self.bias = nn.Parameter(torch.zeros(num_channels)) + self.eps = eps + + def forward(self, x: torch.Tensor) -> torch.Tensor: + u = x.mean(1, keepdim=True) + s = (x - u).pow(2).mean(1, keepdim=True) + x = (x - u) / torch.sqrt(s + self.eps) + x = self.weight[:, None, None, None] * x + self.bias[:, None, None, None] + return x + + +class MaskDecoder3D(nn.Module): + def __init__( + self, + args, + *, + transformer_dim: int = 384, + multiple_outputs: bool = False, + num_multiple_outputs: int = 3, + ) -> None: + super().__init__() + self.args = args + self.multiple_outputs = multiple_outputs + self.num_multiple_outputs = num_multiple_outputs + # if self.args.use_sam3d_turbo: + # self.output_hypernetworks_mlps = nn.ModuleList([MLP(transformer_dim, transformer_dim, 48, 3) for i in range(num_multiple_outputs + 1)]) + # else: + self.output_hypernetworks_mlps = nn.ModuleList([MLP(transformer_dim, transformer_dim, 32, 3) for i in range(num_multiple_outputs + 1)]) + self.iou_prediction_head = MLP(transformer_dim, 256, num_multiple_outputs + 1, 3, sigmoid_output=True) + + self.decoder = Unet_decoder(spatial_dims=3, features=(32, 32, 64, 128, transformer_dim, 32)) + + if self.args.refine: + self.refine = Refine(self.args) + + def forward( + self, + prompt_embeddings: torch.Tensor, # prompt_embedding --> [b, self.num_mask_tokens, c] + image_embeddings, # image_embedding --> [b, c, low_res / 4, low_res / 4, low_res / 4] + feature_list: List[torch.Tensor], + ) -> Tuple[torch.Tensor, torch.Tensor]: + + upscaled_embedding = self.decoder(image_embeddings, feature_list) + masks, iou_pred = self._predict_mask(upscaled_embedding, prompt_embeddings) + return masks, iou_pred + + + def _predict_mask(self, upscaled_embedding, prompt_embeddings): + b, c, x, y, z = upscaled_embedding.shape + + iou_token_out = prompt_embeddings[:, 0, :] + mask_tokens_out = prompt_embeddings[:, 1: (self.num_multiple_outputs + 1 + 1), :] # multiple masks + iou + + hyper_in_list: List[torch.Tensor] = [] + for i in range(self.num_multiple_outputs + 1): + hyper_in_list.append(self.output_hypernetworks_mlps[i](mask_tokens_out[:, i, :])) + hyper_in = torch.stack(hyper_in_list, dim=1) + + masks = (hyper_in @ upscaled_embedding.view(b, c, x * y * z)).view(b, -1, x, y, z) + iou_pred = self.iou_prediction_head(iou_token_out) + + if self.multiple_outputs: + mask_slice = slice(1, None) + else: + mask_slice = slice(0, 1) + masks = masks[:, mask_slice, :, :] + iou_pred = iou_pred[:, mask_slice] + return masks, iou_pred + +class Refine_unet(nn.Module): + def __init__(self): + super(Refine_unet, self).__init__() + self.refine = UNet(spatial_dims=3, in_channels=4, out_channels=1, + channels=(32, 64, 64), strides=(2, 2), num_res_units=2) + def forward(self, x): + return self.refine(x) + +class Refine(nn.Module): + def __init__(self, + args, + spatial_dims: int = 3, + in_channel: int = 4, + out_channel: int = 32, + act: Union[str, tuple] = ("LeakyReLU", {"negative_slope": 0.1, "inplace": True}), + norm: Union[str, tuple] = ("instance", {"affine": True}), + bias: bool = True, + dropout: Union[float, tuple] = 0.0, + ): + super().__init__() + self.args = args + + self.first_conv = Conv["conv", 3](in_channels=in_channel, out_channels=out_channel, kernel_size=1) + + self.conv1 = TwoConv(spatial_dims, out_channel, out_channel, act, norm, bias, dropout) + self.conv2 = TwoConv(spatial_dims, out_channel, out_channel, act, norm, bias, dropout) + + self.conv_error_map = Conv["conv", 3](in_channels=out_channel, out_channels=1, kernel_size=1) + self.conv_correction = Conv["conv", 3](in_channels=out_channel, out_channels=1, kernel_size=1) + + + def forward(self, image, mask_best, points, mask): + + x = self._get_refine_input(image, mask_best, points) + mask = F.interpolate(mask, scale_factor=0.5, mode='trilinear', align_corners=False) + + x = self.first_conv(x) + + residual = x + x = self.conv1(x) + x = residual + x + + residual = x + x = self.conv2(x) + x = residual + x + + error_map = self.conv_error_map(x) + correction = self.conv_correction(x) + + outputs = (error_map * correction + mask) + + outputs = F.interpolate(outputs, scale_factor=2, mode='trilinear', align_corners=False) + error_map = F.interpolate(error_map, scale_factor=2, mode='trilinear', align_corners=False) + return outputs, error_map + + def _get_refine_input(self, image, mask, points): + mask = torch.sigmoid(mask) + mask = (mask > 0.5) + + coors, labels = points[0], points[1] + positive_map, negative_map = torch.zeros_like(image), torch.zeros_like(image) + + for click_iters in range(len(coors)): + coors_click, labels_click = coors[click_iters], labels[click_iters] + for batch in range(image.size(0)): + point_label = labels_click[batch] + coor = coors_click[batch] + # sepehre_coor = [coor[:, 0], coor[:, 1], coor[:, 2]] + + # Create boolean masks + negative_mask = point_label == 0 + positive_mask = point_label != 0 + + # Update negative_map + if negative_mask.any(): # Check if there's at least one True in negative_mask + negative_indices = coor[negative_mask] + for idx in negative_indices: + negative_map[batch, 0, idx[0], idx[1], idx[2]] = 1 + + # Update positive_map + if positive_mask.any(): # Check if there's at least one True in negative_mask + positive_indices = coor[positive_mask] + for idx in positive_indices: + positive_map[batch, 0, idx[0], idx[1], idx[2]] = 1 + + + refine_input = F.interpolate(torch.cat([image, mask, positive_map, negative_map], dim=1), scale_factor=0.5, mode='trilinear') + return refine_input + +class MLP(nn.Module): + def __init__( + self, + input_dim: int, + hidden_dim: int, + output_dim: int, + num_layers: int, + sigmoid_output: bool = False, + ) -> None: + super().__init__() + self.num_layers = num_layers + h = [hidden_dim] * (num_layers - 1) + self.layers = nn.ModuleList( + nn.Linear(n, k) for n, k in zip([input_dim] + h, h + [output_dim]) + ) + self.sigmoid_output = sigmoid_output + + def forward(self, x): + for i, layer in enumerate(self.layers): + x = F.relu(layer(x)) if i < self.num_layers - 1 else layer(x) + if self.sigmoid_output: + x = torch.sigmoid(x) + return x + diff --git a/src/models/prompt_encoder.py b/src/models/prompt_encoder.py new file mode 100644 index 0000000000000000000000000000000000000000..d6da5052e807e76e2ab5affd8d1f58346c0dcc19 --- /dev/null +++ b/src/models/prompt_encoder.py @@ -0,0 +1,307 @@ +# Copyright (c) Meta Platforms, Inc. and affiliates. +# All rights reserved. + +# This source code is licensed under the license found in the +# LICENSE file in the root directory of this source tree. + +import numpy as np +import torch +from torch import nn +from .transformer import TwoWayTransformer3D +from typing import Any, Optional, Tuple, Type + +class LayerNorm3d(nn.Module): + def __init__(self, num_channels: int, eps: float = 1e-6) -> None: + super().__init__() + self.weight = nn.Parameter(torch.ones(num_channels)) + self.bias = nn.Parameter(torch.zeros(num_channels)) + self.eps = eps + + def forward(self, x: torch.Tensor) -> torch.Tensor: + u = x.mean(1, keepdim=True) + s = (x - u).pow(2).mean(1, keepdim=True) + x = (x - u) / torch.sqrt(s + self.eps) + x = self.weight[:, None, None, None] * x + self.bias[:, None, None, None] + return x + + +class PromptEncoder3D(nn.Module): + def __init__( + self, + embed_dim: int, + image_embedding_size: Tuple[int, int, int], + input_image_size: Tuple[int, int, int], + mask_in_chans: int, + # transformer_dim: int, + num_multiple_outputs: int = 3, + activation: Type[nn.Module] = nn.GELU, + multiple_outputs: bool = False, + ) -> None: + """ + Encodes prompts for input to SAM's mask decoder. + + Arguments: + embed_dim (int): The prompts' embedding dimension + image_embedding_size (tuple(int, int)): The spatial size of the + image embedding, as (H, W). + input_image_size (int): The padded size of the image as input + to the image encoder, as (H, W). + mask_in_chans (int): The number of hidden channels used for + encoding input masks. + activation (nn.Module): The activation to use when encoding + input masks. + """ + super().__init__() + self.embed_dim = embed_dim + self.input_image_size = input_image_size + self.image_embedding_size = image_embedding_size + self.pe_layer = PositionEmbeddingRandom3D(embed_dim // 3) + + self.num_point_embeddings: int = 4 # pos/neg point + 2 box corners + point_embeddings = [nn.Embedding(1, embed_dim) for i in range(self.num_point_embeddings)] + self.point_embeddings = nn.ModuleList(point_embeddings) + self.not_a_point_embed = nn.Embedding(1, embed_dim) + + self.mask_input_size = (image_embedding_size[0], image_embedding_size[1], image_embedding_size[2]) + self.mask_downscaling = nn.Sequential( + nn.Conv3d(1, mask_in_chans // 4, kernel_size=2, stride=2), + LayerNorm3d(mask_in_chans // 4), + activation(), + # nn.Conv3d(mask_in_chans // 4, mask_in_chans // 2, kernel_size=2, stride=2), + # LayerNorm3d(mask_in_chans // 2), + # activation(), + nn.Conv3d(mask_in_chans // 4, mask_in_chans, kernel_size=2, stride=2), + LayerNorm3d(mask_in_chans), + activation(), + nn.Conv3d(mask_in_chans, embed_dim, kernel_size=1), + ) + + self.no_mask_embed = nn.Embedding(1, embed_dim) + + self.transformer_dim = embed_dim + self.transformer = TwoWayTransformer3D( + depth=2, + embedding_dim=self.transformer_dim, + mlp_dim=2048, + num_heads=8, + ) + self.multiple_outputs = multiple_outputs + + self.mask_tokens = nn.Embedding(num_multiple_outputs + 1, embed_dim) + self.iou_token = nn.Embedding(1, embed_dim) + #self.iou_token = nn.Embedding(1, embed_dim) if multiple_outputs else None + + def forward( + self, + points: Optional[Tuple[torch.Tensor, torch.Tensor]], + boxes: Optional[torch.Tensor], + masks: Optional[torch.Tensor], + image_embeddings: torch.Tensor, + ) -> Tuple[torch.Tensor, torch.Tensor]: + """ + Embeds different types of prompts, returning both sparse and dense + embeddings. + + Arguments: + points (tuple(torch.Tensor, torch.Tensor) or none): point coordinates + and labels to embed. + boxes (torch.Tensor or none): boxes to embed + masks (torch.Tensor or none): masks to embed + + Returns: + torch.Tensor: sparse embeddings for the points and boxes, with shape + BxNx(embed_dim), where N is determined by the number of input points + and boxes. + torch.Tensor: dense embeddings for the masks, in the shape + Bx(embed_dim)x(embed_H)x(embed_W) + """ + bs = self._get_batch_size(points, boxes, masks) + sparse_embeddings = torch.empty((bs, 0, self.embed_dim), device=self._get_device()) + if points is not None: + coords, labels = points + point_embeddings = self._embed_points(coords, labels, pad=(boxes is None)) + sparse_embeddings = torch.cat([sparse_embeddings, point_embeddings], dim=1) + if boxes is not None: + box_embeddings = self._embed_boxes(boxes) + sparse_embeddings = torch.cat([sparse_embeddings, box_embeddings], dim=1) + + if masks is not None: + dense_embeddings = self._embed_masks(masks) + else: + dense_embeddings = self.no_mask_embed.weight.reshape(1, -1, 1, 1, 1).expand( + bs, -1, self.image_embedding_size[0], self.image_embedding_size[1], self.image_embedding_size[2] + ) + + new_prompt_embeddings, new_image_embeddings = self._two_way_transformer( + image_embeddings=image_embeddings, + image_pe=self.get_dense_pe(), + sparse_prompt_embeddings=sparse_embeddings, # sparse_embeddings --> (B, 2, embed_dim) 2 represents concat of coordination and its label + dense_prompt_embeddings=dense_embeddings, # dense_embeddings --> (B, embed_dim, W, H, D), whd values are customized + ) + # new_prompt_embedding --> [b, self.num_mask_tokens, c], new_image_embedding --> [b, c, low_res / 4, low_res / 4, low_res / 4] + # new_image_embedding --> [b, c, low_res / 4, low_res / 4, low_res / 4] + # return sparse_embeddings, dense_embeddings + return new_prompt_embeddings, new_image_embeddings + + + def _two_way_transformer( + self, + image_embeddings: torch.Tensor, + image_pe: torch.Tensor, + sparse_prompt_embeddings: torch.Tensor, + dense_prompt_embeddings: torch.Tensor, + ) -> Tuple[torch.Tensor, torch.Tensor]: + """Predicts masks. See 'forward' for more details.""" + # Concatenate output tokens + # if self.multiple_outputs: + # output_tokens = torch.cat([self.iou_token.weight, self.mask_tokens.weight], dim=0) + # else: + # output_tokens = self.mask_tokens.weight + + output_tokens = torch.cat([self.iou_token.weight, self.mask_tokens.weight], dim=0) + output_tokens = output_tokens.unsqueeze(0).expand(sparse_prompt_embeddings.size(0), -1, -1) + tokens = torch.cat((output_tokens, sparse_prompt_embeddings), dim=1) + + # Expand per-image data in batch direction to be per-mask + if image_embeddings.shape[0] != tokens.shape[0]: + src = torch.repeat_interleave(image_embeddings, tokens.shape[0], dim=0) + else: + src = image_embeddings + src = src + dense_prompt_embeddings + b, c, x, y, z = src.shape + if image_pe.shape[0] != tokens.shape[0]: + pos_src = torch.repeat_interleave(image_pe, tokens.shape[0], dim=0) + else: + pos_src = image_pe + # token size [batch, tokens, embedding dim] + # embedding dim = 384, tokens = number points + box + 3 multiple outputs + 1 iou + new_point_embedding, new_image_embedding = self.transformer(src, pos_src, tokens) # hidden state and src + return new_point_embedding, new_image_embedding.transpose(1, 2).view(b, c, x, y, z) + # else: + # return new_point_embedding[:, 0, :].unsqueeze(1), new_image_embedding.transpose(1, 2).view(b, c, x, y, z) + + # + # + # a = new_sparse.shape[1] + # if new_sparse.shape[1] != 1: + # return self.output_sparse_mlps(new_sparse.transpose(1, 2)).transpose(1, 2), new_dense + # else: + # return new_sparse, new_dense + + + def get_dense_pe(self) -> torch.Tensor: + """ + Returns the positional encoding used to encode point prompts, + applied to a dense set of points the shape of the image encoding. + + Returns: + torch.Tensor: Positional encoding with shape + 1x(embed_dim)x(embedding_h)x(embedding_w) + """ + return self.pe_layer(self.image_embedding_size).unsqueeze(0) # 1xXxYxZ + + def _embed_points( + self, + points: torch.Tensor, + labels: torch.Tensor, + pad: bool, + ) -> torch.Tensor: + """Embeds point prompts.""" + points = points + 0.5 # Shift to center of pixel + if pad: + padding_point = torch.zeros((points.shape[0], 1, 3), device=points.device) + padding_label = -torch.ones((labels.shape[0], 1), device=labels.device) + points = torch.cat([points, padding_point], dim=1) + labels = torch.cat([labels, padding_label], dim=1) + point_embedding = self.pe_layer.forward_with_coords(points, self.input_image_size) + point_embedding[labels == -1] = 0.0 + point_embedding[labels == -1] += self.not_a_point_embed.weight + point_embedding[labels == 0] += self.point_embeddings[0].weight + point_embedding[labels == 1] += self.point_embeddings[1].weight + return point_embedding + + def _embed_boxes(self, boxes: torch.Tensor) -> torch.Tensor: # XYWH format https://github.com/facebookresearch/segment-anything/blob/main/segment_anything/automatic_mask_generator.py + """Embeds box prompts.""" + boxes = boxes + 0.5 # Shift to center of pixel + coords = boxes.reshape(-1, 2, 3) + corner_embedding = self.pe_layer.forward_with_coords(coords, self.input_image_size) + corner_embedding[:, 0, :] += self.point_embeddings[2].weight + corner_embedding[:, 1, :] += self.point_embeddings[3].weight + return corner_embedding + + def _embed_masks(self, masks: torch.Tensor) -> torch.Tensor: + """Embeds mask inputs.""" + mask_embedding = self.mask_downscaling(masks) + return mask_embedding + + def _get_batch_size( + self, + points: Optional[Tuple[torch.Tensor, torch.Tensor]], + boxes: Optional[torch.Tensor], + masks: Optional[torch.Tensor], + ) -> int: + """ + Gets the batch size of the output given the batch size of the input prompts. + """ + if points is not None: + return points[0].shape[0] + elif boxes is not None: + return boxes.shape[0] + elif masks is not None: + return masks.shape[0] + else: + return 1 + + def _get_device(self) -> torch.device: + return self.point_embeddings[0].weight.device + + + + +class PositionEmbeddingRandom3D(nn.Module): + """ + Positional encoding using random spatial frequencies. + """ + + def __init__(self, num_pos_feats: int = 64, scale: Optional[float] = None) -> None: + super().__init__() + if scale is None or scale <= 0.0: + scale = 1.0 + self.register_buffer( + "positional_encoding_gaussian_matrix", + scale * torch.randn((3, num_pos_feats)), + ) + + def _pe_encoding(self, coords: torch.Tensor) -> torch.Tensor: + """Positionally encode points that are normalized to [0,1].""" + # assuming coords are in [0, 1]^2 square and have d_1 x ... x d_n x 2 shape + coords = 2 * coords - 1 + coords = coords @ self.positional_encoding_gaussian_matrix + coords = 2 * np.pi * coords + # outputs d_1 x ... x d_n x C shape + return torch.cat([torch.sin(coords), torch.cos(coords), torch.sin(coords)], dim=-1) + + def forward(self, size: Tuple[int, int, int]) -> torch.Tensor: + """Generate positional encoding for a grid of the specified size.""" + x, y, z = size + device: Any = self.positional_encoding_gaussian_matrix.device + grid = torch.ones((x, y, z), device=device, dtype=torch.float32) + y_embed = grid.cumsum(dim=0) - 0.5 + x_embed = grid.cumsum(dim=1) - 0.5 + z_embed = grid.cumsum(dim=2) - 0.5 + y_embed = y_embed / y + x_embed = x_embed / x + z_embed = z_embed / z + + pe = self._pe_encoding(torch.stack([x_embed, y_embed, z_embed], dim=-1)) + return pe.permute(3, 0, 1, 2) # C x X x Y x Z + + def forward_with_coords( + self, coords_input: torch.Tensor, image_size: Tuple[int, int, int] + ) -> torch.Tensor: + """Positionally encode points that are not normalized to [0,1].""" + coords = coords_input.clone() + coords[:, :, 0] = coords[:, :, 0] / image_size[0] + coords[:, :, 1] = coords[:, :, 1] / image_size[1] + coords[:, :, 2] = coords[:, :, 2] / image_size[2] + return self._pe_encoding(coords.to(torch.float)) # B x N x C diff --git a/src/models/sam3D.py b/src/models/sam3D.py new file mode 100644 index 0000000000000000000000000000000000000000..746716a5bd911178b0c86cbbf17c83815d8248e4 --- /dev/null +++ b/src/models/sam3D.py @@ -0,0 +1,176 @@ +# Copyright (c) Meta Platforms, Inc. and affiliates. +# All rights reserved. + +# This source code is licensed under the license found in the +# LICENSE file in the root directory of this source tree. + +import torch +from torch import nn +from torch.nn import functional as F + +from typing import Any, Dict, List, Tuple + +from .image_encoder import ImageEncoderViT +from .prompt_encoder import PromptEncoder3D +from .mask_decoder import MaskDecoder3D + +class Sam3D(nn.Module): + mask_threshold: float = 0.0 + image_format: str = "L" + + def __init__( + self, + image_encoder: ImageEncoderViT, + #image_encoder_cnn: BasicUnet, + prompt_encoder: PromptEncoder3D, + mask_decoder: MaskDecoder3D, + pixel_mean: List[float] = [123.675], + pixel_std: List[float] = [58.395], + ) -> None: + """ + SAM predicts object masks from an image and input prompts. + + Arguments: + image_encoder (ImageEncoderViT): The backbone used to encode the + image into image embeddings that allow for efficient mask prediction. + prompt_encoder (PromptEncoder): Encodes various types of input prompts. + mask_decoder (MaskDecoder): Predicts masks from the image embeddings + and encoded prompts. + pixel_mean (list(float)): Mean values for normalizing pixels in the input image. + pixel_std (list(float)): Std values for normalizing pixels in the input image. + """ + super().__init__() + self.image_encoder = image_encoder + self.prompt_encoder = prompt_encoder + self.mask_decoder = mask_decoder + self.register_buffer("pixel_mean", torch.Tensor(pixel_mean).view(-1, 1, 1), False) + self.register_buffer("pixel_std", torch.Tensor(pixel_std).view(-1, 1, 1), False) + + @property + def device(self) -> Any: + return self.pixel_mean.device + + @torch.no_grad() + def forward( + self, + batched_input: List[Dict[str, Any]], + multimask_output: bool, + ) -> List[Dict[str, torch.Tensor]]: + """ + Predicts masks end-to-end from provided images and prompts. + If prompts are not known in advance, using SamPredictor is + recommended over calling the model directly. + + Arguments: + batched_input (list(dict)): A list over input images, each a + dictionary with the following keys. A prompt key can be + excluded if it is not present. + 'image': The image as a torch tensor in 3xHxW format, + already transformed for input to the model. + 'original_size': (tuple(int, int)) The original size of + the image before transformation, as (H, W). + 'point_coords': (torch.Tensor) Batched point prompts for + this image, with shape BxNx2. Already transformed to the + input frame of the model. + 'point_labels': (torch.Tensor) Batched labels for point prompts, + with shape BxN. + 'boxes': (torch.Tensor) Batched box inputs, with shape Bx4. + Already transformed to the input frame of the model. + 'mask_inputs': (torch.Tensor) Batched mask inputs to the model, + in the form Bx1xHxW. + multimask_output (bool): Whether the model should predict multiple + disambiguating masks, or return a single mask. + + Returns: + (list(dict)): A list over input images, where each element is + as dictionary with the following keys. + 'masks': (torch.Tensor) Batched binary mask predictions, + with shape BxCxHxW, where B is the number of input prompts, + C is determined by multimask_output, and (H, W) is the + original size of the image. + 'iou_predictions': (torch.Tensor) The model's predictions + of mask quality, in shape BxC. + 'low_res_logits': (torch.Tensor) Low resolution logits with + shape BxCxHxW, where H=W=256. Can be passed as mask input + to subsequent iterations of prediction. + """ + input_images = torch.stack([self.preprocess(x["image"]) for x in batched_input], dim=0) + image_embeddings = self.image_encoder(input_images) + + outputs = [] + for image_record, curr_embedding in zip(batched_input, image_embeddings): + if "point_coords" in image_record: + points = (image_record["point_coords"], image_record["point_labels"]) + else: + points = None + sparse_embeddings, dense_embeddings = self.prompt_encoder( + points=points, + boxes=image_record.get("boxes", None), + masks=image_record.get("mask_inputs", None), + ) + low_res_masks, iou_predictions = self.mask_decoder( + image_embeddings=curr_embedding.unsqueeze(0), + image_pe=self.prompt_encoder.get_dense_pe(), + sparse_prompt_embeddings=sparse_embeddings, + dense_prompt_embeddings=dense_embeddings, + multimask_output=multimask_output, + ) + masks = self.postprocess_masks( + low_res_masks, + input_size=image_record["image"].shape[-3:], + original_size=image_record["original_size"], + ) + masks = masks > self.mask_threshold + outputs.append( + { + "masks": masks, + "iou_predictions": iou_predictions, + "low_res_logits": low_res_masks, + } + ) + return outputs + + def postprocess_masks( + self, + masks: torch.Tensor, + input_size: Tuple[int, ...], + original_size: Tuple[int, ...], + ) -> torch.Tensor: + """ + Remove padding and upscale masks to the original image size. + + Arguments: + masks (torch.Tensor): Batched masks from the mask_decoder, + in BxCxHxW format. + input_size (tuple(int, int)): The size of the image input to the + model, in (H, W) format. Used to remove padding. + original_size (tuple(int, int)): The original size of the image + before resizing for input to the model, in (H, W) format. + + Returns: + (torch.Tensor): Batched masks in BxCxHxW format, where (H, W) + is given by original_size. + """ + masks = F.interpolate( + masks, + (self.image_encoder.img_size, self.image_encoder.img_size, self.image_encoder.img_size), + mode="bilinear", + align_corners=False, + ) + masks = masks[..., : input_size[0], : input_size[1], : input_size[2]] + masks = F.interpolate(masks, original_size, mode="bilinear", align_corners=False) + return masks + + def preprocess(self, x: torch.Tensor) -> torch.Tensor: + """Normalize pixel values and pad to a square input.""" + # Normalize colors + x = (x - self.pixel_mean) / self.pixel_std + + # Pad + d, h, w = x.shape[-3:] + padd = self.image_encoder.img_size - d + padh = self.image_encoder.img_size - h + padw = self.image_encoder.img_size - w + x = F.pad(x, (0, padw, 0, padh, 0, padd)) + return x + diff --git a/src/models/segmamba_encoder.py b/src/models/segmamba_encoder.py new file mode 100644 index 0000000000000000000000000000000000000000..e474cba19328f922d79be3e7005350ddfa898a5c --- /dev/null +++ b/src/models/segmamba_encoder.py @@ -0,0 +1,214 @@ +import inspect +import torch.nn as nn + +try: + from mamba_ssm import Mamba +except ImportError as exc: + raise ImportError( + "mamba_ssm is required for SegMamba. Install it via the SegMamba repo (mamba/ setup.py install) " + "or pip install mamba-ssm." + ) from exc + +from .unet import TwoConv + + +class MambaLayer(nn.Module): + def __init__(self, dim, d_state=16, d_conv=4, expand=2, num_slices=None): + super().__init__() + self.dim = dim + self.norm = nn.LayerNorm(dim) + kwargs = { + "d_model": dim, + "d_state": d_state, + "d_conv": d_conv, + "expand": expand, + } + sig = inspect.signature(Mamba.__init__) + if "bimamba_type" in sig.parameters: + kwargs["bimamba_type"] = "v3" + if num_slices is not None and "nslices" in sig.parameters: + kwargs["nslices"] = num_slices + self.mamba = Mamba(**kwargs) + + def forward(self, x): + b, c = x.shape[:2] + x_skip = x + if c != self.dim: + raise ValueError(f"Expected {self.dim} channels, got {c}") + n_tokens = x.shape[2:].numel() + img_dims = x.shape[2:] + x_flat = x.reshape(b, c, n_tokens).transpose(-1, -2) + x_norm = self.norm(x_flat) + x_mamba = self.mamba(x_norm) + out = x_mamba.transpose(-1, -2).reshape(b, c, *img_dims) + return out + x_skip + + +class MlpChannel(nn.Module): + def __init__(self, hidden_size, mlp_dim): + super().__init__() + self.fc1 = nn.Conv3d(hidden_size, mlp_dim, 1) + self.act = nn.GELU() + self.fc2 = nn.Conv3d(mlp_dim, hidden_size, 1) + + def forward(self, x): + x = self.fc1(x) + x = self.act(x) + x = self.fc2(x) + return x + + +class GSC(nn.Module): + def __init__(self, in_channels): + super().__init__() + self.proj = nn.Conv3d(in_channels, in_channels, 3, 1, 1) + self.norm = nn.InstanceNorm3d(in_channels) + self.nonliner = nn.ReLU() + + self.proj2 = nn.Conv3d(in_channels, in_channels, 3, 1, 1) + self.norm2 = nn.InstanceNorm3d(in_channels) + self.nonliner2 = nn.ReLU() + + self.proj3 = nn.Conv3d(in_channels, in_channels, 1, 1, 0) + self.norm3 = nn.InstanceNorm3d(in_channels) + self.nonliner3 = nn.ReLU() + + self.proj4 = nn.Conv3d(in_channels, in_channels, 1, 1, 0) + self.norm4 = nn.InstanceNorm3d(in_channels) + self.nonliner4 = nn.ReLU() + + def forward(self, x): + x_residual = x + + x1 = self.proj(x) + x1 = self.norm(x1) + x1 = self.nonliner(x1) + + x1 = self.proj2(x1) + x1 = self.norm2(x1) + x1 = self.nonliner2(x1) + + x2 = self.proj3(x) + x2 = self.norm3(x2) + x2 = self.nonliner3(x2) + + x = x1 + x2 + x = self.proj4(x) + x = self.norm4(x) + x = self.nonliner4(x) + return x + x_residual + + +class MambaEncoder(nn.Module): + def __init__( + self, + in_chans=1, + depths=(2, 2, 2, 2), + dims=(48, 96, 192, 384), + drop_path_rate=0.0, + layer_scale_init_value=1e-6, + out_indices=(0, 1, 2, 3), + img_size=128, + ): + super().__init__() + self.downsample_layers = nn.ModuleList() + stem = nn.Sequential( + nn.Conv3d(in_chans, dims[0], kernel_size=7, stride=2, padding=3), + ) + self.downsample_layers.append(stem) + for i in range(3): + downsample_layer = nn.Sequential( + nn.InstanceNorm3d(dims[i]), + nn.Conv3d(dims[i], dims[i + 1], kernel_size=2, stride=2), + ) + self.downsample_layers.append(downsample_layer) + + self.stages = nn.ModuleList() + self.gscs = nn.ModuleList() + num_slices_list = [max(1, img_size // (2 ** (i + 1))) for i in range(4)] + for i in range(4): + gsc = GSC(dims[i]) + stage = nn.Sequential( + *[MambaLayer(dim=dims[i], num_slices=num_slices_list[i]) for _ in range(depths[i])] + ) + self.stages.append(stage) + self.gscs.append(gsc) + + self.out_indices = out_indices + + self.mlps = nn.ModuleList() + for i_layer in range(4): + layer = nn.InstanceNorm3d(dims[i_layer]) + self.add_module(f"norm{i_layer}", layer) + self.mlps.append(MlpChannel(dims[i_layer], 2 * dims[i_layer])) + + def forward_features(self, x): + outs = [] + for i in range(4): + x = self.downsample_layers[i](x) + x = self.gscs[i](x) + x = self.stages[i](x) + if i in self.out_indices: + norm_layer = getattr(self, f"norm{i}") + x_out = norm_layer(x) + x_out = self.mlps[i](x_out) + outs.append(x_out) + return tuple(outs) + + def forward(self, x): + return self.forward_features(x) + + +class ImageEncoderSegMamba(nn.Module): + def __init__( + self, + args, + img_size=128, + in_chans=1, + embed_dim=384, + depths=(2, 2, 2, 2), + dims=(48, 96, 192, 384), + ): + super().__init__() + self.args = args + self.img_size = img_size + self.backbone = MambaEncoder( + in_chans=in_chans, + depths=depths, + dims=dims, + img_size=img_size, + ) + + act = ("LeakyReLU", {"negative_slope": 0.1, "inplace": True}) + norm = ("instance", {"affine": True}) + self.stem = TwoConv(3, in_chans, 32, act, norm, True, 0.0) + + self.proj1 = self._proj_block(dims[0], 32) + self.proj2 = self._proj_block(dims[1], 64) + self.proj3 = self._proj_block(dims[2], 128) + + self.out_proj = None + if dims[3] != embed_dim: + self.out_proj = nn.Conv3d(dims[3], embed_dim, kernel_size=1, bias=False) + self.out_norm = nn.InstanceNorm3d(embed_dim) + + def _proj_block(self, in_ch, out_ch): + return nn.Sequential( + nn.Conv3d(in_ch, out_ch, kernel_size=1, bias=False), + nn.InstanceNorm3d(out_ch), + nn.GELU(), + ) + + def forward(self, x): + x0 = self.stem(x) + x1, x2, x3, x4 = self.backbone(x) + + f1 = self.proj1(x1) + f2 = self.proj2(x2) + f3 = self.proj3(x3) + + if self.out_proj is not None: + x4 = self.out_norm(self.out_proj(x4)) + + feature_list = [x0, f1, f2, f3] + return x4, feature_list diff --git a/src/models/transformer.py b/src/models/transformer.py new file mode 100644 index 0000000000000000000000000000000000000000..3fe5835e5672f34c24783993c05a89daada3af9f --- /dev/null +++ b/src/models/transformer.py @@ -0,0 +1,254 @@ +# Copyright (c) Meta Platforms, Inc. and affiliates. +# All rights reserved. + +# This source code is licensed under the license found in the +# LICENSE file in the root directory of this source tree. + +import torch +from torch import Tensor, nn + +import math +from typing import Tuple, Type + + +class MLPBlock3D(nn.Module): + def __init__( + self, + embedding_dim: int, + mlp_dim: int, + act: Type[nn.Module] = nn.GELU, + ) -> None: + super().__init__() + self.lin1 = nn.Linear(embedding_dim, mlp_dim) + self.lin2 = nn.Linear(mlp_dim, embedding_dim) + self.act = act() + + def forward(self, x: torch.Tensor) -> torch.Tensor: + return self.lin2(self.act(self.lin1(x))) + + +class TwoWayTransformer3D(nn.Module): + def __init__( + self, + depth: int, + embedding_dim: int, + num_heads: int, + mlp_dim: int, + activation: Type[nn.Module] = nn.ReLU, + attention_downsample_rate: int = 2, + ) -> None: + """ + A transformer decoder that attends to an input image using + queries whose positional embedding is supplied. + + Args: + depth (int): number of layers in the transformer + embedding_dim (int): the channel dimension for the input embeddings + num_heads (int): the number of heads for multihead attention. Must + divide embedding_dim + mlp_dim (int): the channel dimension internal to the MLP block + activation (nn.Module): the activation to use in the MLP block + """ + super().__init__() + self.depth = depth + self.embedding_dim = embedding_dim + self.num_heads = num_heads + self.mlp_dim = mlp_dim + self.layers = nn.ModuleList() + + for i in range(depth): + self.layers.append( + TwoWayAttentionBlock3D( + embedding_dim=embedding_dim, + num_heads=num_heads, + mlp_dim=mlp_dim, + activation=activation, + attention_downsample_rate=attention_downsample_rate, + skip_first_layer_pe=(i == 0), + ) + ) + + self.final_attn_token_to_image = Attention( + embedding_dim, num_heads, downsample_rate=attention_downsample_rate + ) + self.norm_final_attn = nn.LayerNorm(embedding_dim) + + def forward( + self, + image_embedding: Tensor, + image_pe: Tensor, + point_embedding: Tensor, + ) -> Tuple[Tensor, Tensor]: + """ + Args: + image_embedding (torch.Tensor): image to attend to. Should be shape + B x embedding_dim x h x w for any h and w. + image_pe (torch.Tensor): the positional encoding to add to the image. Must + have the same shape as image_embedding. + point_embedding (torch.Tensor): the embedding to add to the query points. + Must have shape B x N_points x embedding_dim for any N_points. + + Returns: + torch.Tensor: the processed point_embedding + torch.Tensor: the processed image_embedding + """ + # BxCxHxW -> BxHWxC == B x N_image_tokens x C + bs, c, x, y, z = image_embedding.shape + image_embedding = image_embedding.flatten(2).permute(0, 2, 1) + image_pe = image_pe.flatten(2).permute(0, 2, 1) + + # Prepare queries + queries = point_embedding + keys = image_embedding + + # Apply transformer blocks and final layernorm + for layer in self.layers: + queries, keys = layer( + queries=queries, + keys=keys, + query_pe=point_embedding, + key_pe=image_pe, + ) + + # Apply the final attention layer from the points to the image + q = queries + point_embedding + k = keys + image_pe + attn_out = self.final_attn_token_to_image(q=q, k=k, v=keys) + queries = queries + attn_out + queries = self.norm_final_attn(queries) + + return queries, keys + + +class TwoWayAttentionBlock3D(nn.Module): + def __init__( + self, + embedding_dim: int, + num_heads: int, + mlp_dim: int = 2048, + activation: Type[nn.Module] = nn.ReLU, + attention_downsample_rate: int = 2, + skip_first_layer_pe: bool = False, + ) -> None: + """ + A transformer block with four layers: (1) self-attention of sparse + inputs, (2) cross attention of sparse inputs to dense inputs, (3) mlp + block on sparse inputs, and (4) cross attention of dense inputs to sparse + inputs. + + Arguments: + embedding_dim (int): the channel dimension of the embeddings + num_heads (int): the number of heads in the attention layers + mlp_dim (int): the hidden dimension of the mlp block + activation (nn.Module): the activation of the mlp block + skip_first_layer_pe (bool): skip the PE on the first layer + """ + super().__init__() + self.self_attn = Attention(embedding_dim, num_heads) + self.norm1 = nn.LayerNorm(embedding_dim) + + self.cross_attn_token_to_image = Attention( + embedding_dim, num_heads, downsample_rate=attention_downsample_rate + ) + self.norm2 = nn.LayerNorm(embedding_dim) + + self.mlp = MLPBlock3D(embedding_dim, mlp_dim, activation) + self.norm3 = nn.LayerNorm(embedding_dim) + + self.norm4 = nn.LayerNorm(embedding_dim) + self.cross_attn_image_to_token = Attention( + embedding_dim, num_heads, downsample_rate=attention_downsample_rate + ) + + self.skip_first_layer_pe = skip_first_layer_pe + + def forward( + self, queries: Tensor, keys: Tensor, query_pe: Tensor, key_pe: Tensor + ) -> Tuple[Tensor, Tensor]: + # Self attention block + if self.skip_first_layer_pe: + queries = self.self_attn(q=queries, k=queries, v=queries) + else: + q = queries + query_pe + attn_out = self.self_attn(q=q, k=q, v=queries) + queries = queries + attn_out + queries = self.norm1(queries) + + # Cross attention block, tokens attending to image embedding + q = queries + query_pe + k = keys + key_pe + attn_out = self.cross_attn_token_to_image(q=q, k=k, v=keys) + queries = queries + attn_out + queries = self.norm2(queries) + + # MLP block + mlp_out = self.mlp(queries) + queries = queries + mlp_out + queries = self.norm3(queries) + + # Cross attention block, image embedding attending to tokens + q = queries + query_pe + k = keys + key_pe + attn_out = self.cross_attn_image_to_token(q=k, k=q, v=queries) + keys = keys + attn_out + keys = self.norm4(keys) + + return queries, keys + + +class Attention(nn.Module): + """ + An attention layer that allows for downscaling the size of the embedding + after projection to queries, keys, and values. + """ + + def __init__( + self, + embedding_dim: int, + num_heads: int, + downsample_rate: int = 1, + ) -> None: + super().__init__() + self.embedding_dim = embedding_dim + self.internal_dim = embedding_dim // downsample_rate + self.num_heads = num_heads + assert self.internal_dim % num_heads == 0, "num_heads must divide embedding_dim." + + self.q_proj = nn.Linear(embedding_dim, self.internal_dim) + self.k_proj = nn.Linear(embedding_dim, self.internal_dim) + self.v_proj = nn.Linear(embedding_dim, self.internal_dim) + self.out_proj = nn.Linear(self.internal_dim, embedding_dim) + + def _separate_heads(self, x: Tensor, num_heads: int) -> Tensor: + b, n, c = x.shape + x = x.reshape(b, n, num_heads, c // num_heads) + return x.transpose(1, 2) # B x N_heads x N_tokens x C_per_head + + def _recombine_heads(self, x: Tensor) -> Tensor: + b, n_heads, n_tokens, c_per_head = x.shape + x = x.transpose(1, 2) + return x.reshape(b, n_tokens, n_heads * c_per_head) # B x N_tokens x C + + def forward(self, q: Tensor, k: Tensor, v: Tensor) -> Tensor: + # Input projections + q = self.q_proj(q) + k = self.k_proj(k) + v = self.v_proj(v) + + # Separate into heads + q = self._separate_heads(q, self.num_heads) + k = self._separate_heads(k, self.num_heads) + v = self._separate_heads(v, self.num_heads) + + # Attention + _, _, _, c_per_head = q.shape + attn = q @ k.permute(0, 1, 3, 2) # B x N_heads x N_tokens x N_tokens + attn = attn / math.sqrt(c_per_head) + attn = torch.softmax(attn, dim=-1) + + # Get output + out = attn @ v + out = self._recombine_heads(out) + out = self.out_proj(out) + + return out diff --git a/src/models/unet.py b/src/models/unet.py new file mode 100644 index 0000000000000000000000000000000000000000..9e1a56711eb3f52924cff751592270b64336e238 --- /dev/null +++ b/src/models/unet.py @@ -0,0 +1,247 @@ +# Copyright (c) MONAI Consortium +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# http://www.apache.org/licenses/LICENSE-2.0 +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +from typing import Optional, Sequence, Union + +import torch +import torch.nn as nn + +from monai.networks.blocks import Convolution, UpSample, ResidualUnit +from monai.networks.layers.factories import Conv, Pool +from monai.utils import deprecated_arg, ensure_tuple_rep + +__all__ = ["BasicUnet", "Basicunet", "basicunet", "BasicUNet"] + + +class TwoConv(nn.Sequential): + """two convolutions.""" + + def __init__( + self, + spatial_dims: int, + in_chns: int, + out_chns: int, + act: Union[str, tuple], + norm: Union[str, tuple], + bias: bool, + dropout: Union[float, tuple] = 0.0, + ): + """ + Args: + spatial_dims: number of spatial dimensions. + in_chns: number of input channels. + out_chns: number of output channels. + act: activation type and arguments. + norm: feature normalization type and arguments. + bias: whether to have a bias term in convolution blocks. + dropout: dropout ratio. Defaults to no dropout. + + """ + super().__init__() + + conv_0 = Convolution(spatial_dims, in_chns, out_chns, act=act, norm=norm, dropout=dropout, bias=bias, padding=1) + conv_1 = Convolution( + spatial_dims, out_chns, out_chns, act=act, norm=norm, dropout=dropout, bias=bias, padding=1 + ) + self.add_module("conv_0", conv_0) + self.add_module("conv_1", conv_1) + + +class Down(nn.Sequential): + """maxpooling downsampling and two convolutions.""" + + def __init__( + self, + spatial_dims: int, + in_chns: int, + out_chns: int, + act: Union[str, tuple], + norm: Union[str, tuple], + bias: bool, + dropout: Union[float, tuple] = 0.0, + ): + """ + Args: + spatial_dims: number of spatial dimensions. + in_chns: number of input channels. + out_chns: number of output channels. + act: activation type and arguments. + norm: feature normalization type and arguments. + bias: whether to have a bias term in convolution blocks. + dropout: dropout ratio. Defaults to no dropout. + + """ + super().__init__() + max_pooling = Pool["MAX", spatial_dims](kernel_size=2) + convs = TwoConv(spatial_dims, in_chns, out_chns, act, norm, bias, dropout) + self.add_module("max_pooling", max_pooling) + self.add_module("convs", convs) + + +class UpCat(nn.Module): + """upsampling, concatenation with the encoder feature map, two convolutions""" + + def __init__( + self, + spatial_dims: int, + in_chns: int, + cat_chns: int, + out_chns: int, + act: Union[str, tuple], + norm: Union[str, tuple], + bias: bool, + dropout: Union[float, tuple] = 0.0, + upsample: str = "deconv", + pre_conv: Optional[Union[nn.Module, str]] = "default", + interp_mode: str = "linear", + align_corners: Optional[bool] = True, + halves: bool = True, + is_pad: bool = True, + ): + """ + Args: + spatial_dims: number of spatial dimensions. + in_chns: number of input channels to be upsampled. + cat_chns: number of channels from the encoder. + out_chns: number of output channels. + act: activation type and arguments. + norm: feature normalization type and arguments. + bias: whether to have a bias term in convolution blocks. + dropout: dropout ratio. Defaults to no dropout. + upsample: upsampling mode, available options are + ``"deconv"``, ``"pixelshuffle"``, ``"nontrainable"``. + pre_conv: a conv block applied before upsampling. + Only used in the "nontrainable" or "pixelshuffle" mode. + interp_mode: {``"nearest"``, ``"linear"``, ``"bilinear"``, ``"bicubic"``, ``"trilinear"``} + Only used in the "nontrainable" mode. + align_corners: set the align_corners parameter for upsample. Defaults to True. + Only used in the "nontrainable" mode. + halves: whether to halve the number of channels during upsampling. + This parameter does not work on ``nontrainable`` mode if ``pre_conv`` is `None`. + is_pad: whether to pad upsampling features to fit features from encoder. Defaults to True. + + """ + super().__init__() + if upsample == "nontrainable" and pre_conv is None: + up_chns = in_chns + else: + up_chns = in_chns // 2 if halves else in_chns + self.upsample = UpSample( + spatial_dims, + in_chns, + up_chns, + 2, + mode=upsample, + pre_conv=pre_conv, + interp_mode=interp_mode, + align_corners=align_corners, + ) + self.convs = TwoConv(spatial_dims, cat_chns + up_chns, out_chns, act, norm, bias, dropout) + self.is_pad = is_pad + + def forward(self, x: torch.Tensor, x_e: Optional[torch.Tensor]): + """ + + Args: + x: features to be upsampled. + x_e: features from the encoder. + """ + x_0 = self.upsample(x) + + if x_e is not None: + if self.is_pad: + # handling spatial shapes due to the 2x maxpooling with odd edge lengths. + dimensions = len(x.shape) - 2 + sp = [0] * (dimensions * 2) + for i in range(dimensions): + if x_e.shape[-i - 1] != x_0.shape[-i - 1]: + sp[i * 2 + 1] = 1 + x_0 = torch.nn.functional.pad(x_0, sp, "replicate") + x = self.convs(torch.cat([x_e, x_0], dim=1)) # input channels: (cat_chns + up_chns) + else: + x = self.convs(x_0) + + return x + + +class Unet_decoder(nn.Module): + def __init__( + self, + spatial_dims: int = 3, + out_channels: int = 2, + features: Sequence[int] = (32, 32, 64, 128, 256, 32), + act: Union[str, tuple] = ("LeakyReLU", {"negative_slope": 0.1, "inplace": True}), + norm: Union[str, tuple] = ("instance", {"affine": True}), + bias: bool = True, + dropout: Union[float, tuple] = 0.0, + upsample: str = "deconv", + dimensions: Optional[int] = None, + ): + super().__init__() + if dimensions is not None: + spatial_dims = dimensions + fea = ensure_tuple_rep(features, 6) + print(f"Unet_decoder features: {fea}.") + + self.upcat_4 = UpCat(spatial_dims, fea[4], fea[3], fea[3], act, norm, bias, dropout, upsample) + self.upcat_3 = UpCat(spatial_dims, fea[3], fea[2], fea[2], act, norm, bias, dropout, upsample) + self.upcat_2 = UpCat(spatial_dims, fea[2], fea[1], fea[1], act, norm, bias, dropout, upsample) + self.upcat_1 = UpCat(spatial_dims, fea[1], fea[0], fea[5], act, norm, bias, dropout, upsample, halves=False) + + self.final_conv = Conv["conv", spatial_dims](fea[5], out_channels, kernel_size=1) + + def forward(self, image_embeddings, feature_list): + x4, x3, x2, x1, x0 = image_embeddings, feature_list[3], feature_list[2], feature_list[1], feature_list[0] + u4 = self.upcat_4(x4, x3) + u3 = self.upcat_3(u4, x2) + u2 = self.upcat_2(u3, x1) + u1 = self.upcat_1(u2, x0) + + # logits = self.final_conv(u1) + return u1 + +class Unet_encoder(nn.Module): + def __init__( + self, + spatial_dims: int = 3, + in_channels: int = 1, + features: Sequence[int] = (32, 32, 64, 128, 256, 32), + act: Union[str, tuple] = ("LeakyReLU", {"negative_slope": 0.1, "inplace": True}), + norm: Union[str, tuple] = ("instance", {"affine": True}), + bias: bool = True, + dropout: Union[float, tuple] = 0.0, + dimensions: Optional[int] = None, + ): + super().__init__() + if dimensions is not None: + 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0000000000000000000000000000000000000000..247208cbea5075793dd33565e276c9b97e52d005 Binary files /dev/null and b/src/processor/__pycache__/validater.cpython-39.pyc differ diff --git a/src/processor/tester.py b/src/processor/tester.py new file mode 100644 index 0000000000000000000000000000000000000000..87ff831e9ca93d0b69f89043e69464f4db9deca0 --- /dev/null +++ b/src/processor/tester.py @@ -0,0 +1,244 @@ +import nibabel as nib +import numpy as np +import torch +import torch.nn.functional as F +import surface_distance +from surface_distance import metrics +from src.utils.util import save_predict, save_csv + + + +def model_predict(args, img, prompt, img_encoder, prompt_encoder, mask_decoder): + patch_size = args.rand_crop_size[0] + device = args.device + out = F.interpolate(img.float(), scale_factor=512 / patch_size, mode='trilinear') + input_batch = out[0].transpose(0, 1) + batch_features, feature_list = img_encoder(input_batch) + feature_list.append(batch_features) + #feature_list = feature_list[::-1] + points_torch = prompt.transpose(0, 1) + new_feature = [] + for i, (feature, feature_decoder) in enumerate(zip(feature_list, prompt_encoder)): + if i == 3: + new_feature.append( + feature_decoder(feature.to(device), points_torch.clone(), [patch_size, patch_size, patch_size]) + ) + else: + new_feature.append(feature.to(device)) + img_resize = F.interpolate(img[0, 0].permute(1, 2, 0).unsqueeze(0).unsqueeze(0).to(device), scale_factor=64/patch_size, + mode="trilinear") + new_feature.append(img_resize) + masks = mask_decoder(new_feature, 2, patch_size//64) + masks = masks.permute(0, 1, 4, 2, 3) + return masks + +def get_points_prompt(args, points_dict, cumulative=False): + """ + get prompt tensor (input) with given point-locations + """ + patch_size = args.rand_crop_size[0] + + # the first point is always same, and we use it as anchor point, i.e. (x[0], y[0], z[0]) --> (206, 126, 320) + # manually test with 1 prompt, 5 prompts and 10 prompts + x, y, z = points_dict['x_location'], points_dict['y_location'], points_dict['z_location'] # x with size--> tensor([num_prompts, 1]) + + x_m = (torch.max(x) + torch.min(x)) // 2 + y_m = (torch.max(y) + torch.min(y)) // 2 + z_m = (torch.max(z) + torch.min(z)) // 2 + + # considered transpose in dataloader, e.g. match to real original images + d_min = x_m - patch_size // 2 + d_max = x_m + patch_size // 2 + h_min = z_m - patch_size // 2 + h_max = z_m + patch_size // 2 + w_min = y_m - patch_size // 2 + w_max = y_m + patch_size // 2 + + + + points = torch.cat([z - d_min, x - w_min, y - h_min], dim=1).unsqueeze(1).float() + points_torch = points.to(args.device) + + patch_dict = {'w_min': w_min, 'w_max': w_max, 'h_min': h_min, 'h_max': h_max, 'd_min': d_min, 'd_max': d_max} + + return points_torch, patch_dict + + + +def get_final_prediction(args, img, seg_dict, points_dict, img_encoder, prompt_encoder_list, mask_decoder): + seg = seg_dict['seg'] + + device = args.device + patch_size = args.rand_crop_size[0] + + points_torch, patch_dict = get_points_prompt(args, points_dict) + + + w_min, w_max = patch_dict['w_min'], patch_dict['w_max'] + h_min, h_max = patch_dict['h_min'], patch_dict['h_max'] + d_min, d_max = patch_dict['d_min'], patch_dict['d_max'] + + + + w_l = max(0, -w_min) + w_r = max(0, w_max - points_dict['z_dimension']) + h_l = max(0, -h_min) + h_r = max(0, h_max - points_dict['y_dimension']) + d_l = max(0, -d_min) + d_r = max(0, d_max - points_dict['x_dimension']) + + d_min = max(0, d_min) + h_min = max(0, h_min) + w_min = max(0, w_min) + + img_patch = img[:, :, d_min:d_max, h_min:h_max, w_min:w_max].clone() + prompt_patch = seg_dict['prompt'][:, :, d_min:d_max, h_min:h_max, w_min:w_max].clone() + print(torch.unique(prompt_patch)) + print(prompt_patch.sum()) + + l = len(torch.where(prompt_patch == 1)[0][10:]) + sample = np.random.choice(np.arange(l), l, replace=True) + x_negative, y_negative, z_negative = get_points(seg_dict['prompt'], sample, positive=True) + points_negative = torch.cat([z_negative - d_min, x_negative - w_min, y_negative - h_min], dim=1).unsqueeze(1).float().to(args.device) + points_torch = torch.cat([points_torch, points_negative], dim=0) + #points_torch = points_torch[:1] + print(points_torch.size()) + # the pad follows the format (pad ordering) of torch + # pad deals the points that are not included in the original patch (default size: 128^3) + # if such case happens, the points values are negative + # global query in prompt encoder is a learnable variable + # this may because the point values represent the coordinate information with a shifted origin (-d_min, -h_min, -w_min) + img_patch = F.pad(img_patch, (w_l, w_r, h_l, h_r, d_l, d_r)) # follow the format of torch pad function + + pred = model_predict(args, + img_patch, + points_torch, + img_encoder, + prompt_encoder_list, + mask_decoder) + pred = pred[:, :, d_l:patch_size - d_r, h_l:patch_size - h_r, w_l:patch_size - w_r] + pred = F.softmax(pred, dim=1)[:, 1] + # seg_pred is not meta tensor + # seg_pred = torch.zeros(1, 1, points_dict['x_dimension'], points_dict['z_dimension'], points_dict['y_dimension']).to(device) + # zeros_like carries meta tensor + seg_pred = torch.zeros_like(img).to(device)[:, 0, :].unsqueeze(0) + seg_pred[:, :, d_min:d_max, h_min:h_max, w_min:w_max] += pred + + final_pred = F.interpolate(seg_pred, size=seg.shape[2:], mode="trilinear") + img_orig = F.interpolate(img, size=seg.shape[2:], mode="trilinear") + + # original_image = F.pad(input=img, pad=(0, 1, 0, 0), mode='constant', value=0) + return final_pred, img_orig + + +def get_points(prompt, sample, positive=True): + value = 1 if positive else 0 + z = torch.where(prompt == value)[3][sample].unsqueeze(1) # --> tensor([[x_value]]) instead of tensor([x_value]) + x = torch.where(prompt == value)[2][sample].unsqueeze(1) # ignore: check datasets.py, --> self.spatial_index + y = torch.where(prompt == value)[4][sample].unsqueeze(1) + # consider x,y,z here is a,b,c. and abc need to match features after img_encoder with size (b,c,x,z,y) + # e.g. a-->x, b-->z, c-->y + # xyz are the coordinates after dataloader, e.g. without consider the self.spatial_index + return x, y, z +def get_points_location(args, prompt, negative=False): + """ + use this to get anchor points + """ + np.random.seed(args.seed) + l = len(torch.where(prompt == 1)[0]) + sample = np.random.choice(np.arange(l), args.num_prompts, replace=True) + x, y, z = get_points(prompt, sample) + if negative: + l = len(torch.where(prompt == 0)[0]) + sample = np.random.choice(np.arange(l), args.num_prompts, replace=True) + x_negative, y_negative, z_negative = get_points(prompt, sample, positive=False) + x = torch.cat([x, x_negative], dim=0) + y = torch.cat([y, y_negative], dim=0) + z = torch.cat([z, z_negative], dim=0) + + # this x, y, z location follows the original after change spatial_index + points_dict = {'x_location': x, 'y_location': y, 'z_location': z, + 'x_dimension': prompt.shape[2], 'y_dimension': prompt.shape[3], 'z_dimension': prompt.shape[4]} + return points_dict +def get_input(args, img, seg, negative=False): + seg = seg.float().unsqueeze(0) + seg = seg.to(args.device) + img = img.to(args.device) + prompt = F.interpolate(seg, img.shape[2:], mode="nearest") + points_dict = get_points_location(args, prompt, negative=negative) + seg_dict = {'seg': seg, 'prompt': prompt} + return img, seg_dict, points_dict + + +def calculate_cost(args, + prediction, ground_truth, + loss_function, spacing, + loss_list, loss_nsd_list): + + loss = 1 - loss_function(prediction, ground_truth) + loss_value = loss.squeeze(0).squeeze(0).squeeze(0).squeeze(0).squeeze(0).detach().cpu().numpy() + + ssd = surface_distance.compute_surface_distances( + (ground_truth == 1)[0, 0].cpu().numpy(), + (prediction == 1)[0, 0].cpu().numpy(), + spacing_mm=spacing[0].numpy() + ) + nsd = metrics.compute_surface_dice_at_tolerance(ssd, args.tolerance) + + loss_list.append(loss_value) + loss_nsd_list.append(nsd) + + return loss_list, loss_nsd_list, loss_value, nsd + + +def tester(args, logger, + model_dict, test_data, loss_list, loss_nsd_list, + loss_function): + img_encoder, prompt_encoder_list, mask_decoder = model_dict['img_encoder'], model_dict['prompt_encoder_list'], \ + model_dict['mask_decoder'] + + patient_list = [] + + for idx, (img, seg, spacing) in enumerate(test_data): + print( 'current / total subjects: {} / {}' + .format(idx + 1, len(test_data.dataset.img_dict))) + image_path = test_data.dataset.img_dict[idx] + image_data = nib.load(image_path) + + if args.data == 'pancreas': + patient_name = test_data.dataset.img_dict[idx].split('/')[-2] + '.nii.gz' + else: + patient_name = test_data.dataset.img_dict[idx].split('/')[-1] + + patient_list.append(patient_name) + + img, seg_dict, points_dict = get_input(args, img, seg, negative=False) # get input and point prompt + + # pred + final_pred, img_orig_space = get_final_prediction(args, img, seg_dict, points_dict, img_encoder, + prompt_encoder_list, mask_decoder) + + masks = final_pred > 0.5 + loss_list, loss_nsd_list, loss, nsd = calculate_cost(args, + masks, seg_dict['seg'], + loss_function, spacing, + loss_list, loss_nsd_list) + # print(1 - loss_function(masks, seg)) + logger.info( + " Case {}/{} {} - Dice {:.6f} | NSD {:.6f}".format( + idx + 1, len(test_data.dataset.img_dict), test_data.dataset.img_dict[idx], loss.item(), nsd)) + + if args.save_predictions: + save_predict(args, logger, final_pred, seg_dict['seg'], masks, points_dict, idx, test_data, image_data, patient_name) # coordinates are recorded in the log file + + + # all subject + mean_dice, mean_nsd = np.mean(loss_list), np.mean(loss_nsd_list) + logger.info("- Test metrics Dice: " + str(mean_dice)) + logger.info("- Test metrics NSD: " + str(mean_nsd)) + logger.info("----------------------") + + if args.save_csv: + save_csv(args, logger, patient_list, loss_list, loss_nsd_list) + + return loss_list, loss_nsd_list, patient_list diff --git a/src/processor/trainer.py b/src/processor/trainer.py new file mode 100644 index 0000000000000000000000000000000000000000..b5d62e802e7cf0a35f651d24295db1f08a726269 --- /dev/null +++ b/src/processor/trainer.py @@ -0,0 +1,263 @@ +import torch +import torch.nn.functional as F +import random +import numpy as np +from src.utils.util import _bbox_mask +from src.utils import scribble, boundary_selection +from .trainer_basic import Trainer_basic + +class Trainer(Trainer_basic): + def __init__(self, args, logger): + super().__init__(args, logger) + + def forward(self, sam_model, image, label, iter_nums, train=False, return_each_iter=False): + if return_each_iter: + return_mask_total_iter = torch.zeros([iter_nums, 1, image.size(2), image.size(3), image.size(4)]) + + image_embedding, feature_list = self.sam.image_encoder(image) + self.click_points = [] + self.click_labels = [] + return_loss = 0 + prev_masks = torch.zeros_like(label, dtype=torch.float).to(label.device) + for iter_num in range(iter_nums): + loss = 0 + prev_masks_sigmoid = torch.sigmoid(prev_masks) if iter_num > 0 else prev_masks + + points_input, labels_input, box_input = self.get_points(prev_masks_sigmoid, label, train_mode=train) + mask, dice_pred = self.iteration_forward(sam_model, feature_list, image_embedding, prev_masks, + points=[points_input, labels_input], boxes=box_input) + + # ======================================================== + if self.args.multiple_outputs: + dice_pred_best, max_label_index = torch.max(dice_pred, dim=1) + mask_list = [mask[i, max_label_index[i], :].unsqueeze(0) for i in range(mask.size(0))] + mask_best = torch.stack(mask_list, dim=0) + else: + mask_best = mask + + # ======================================================== + if train: + if self.args.multiple_outputs: + for i in range(mask.size(1)): + single_mask, single_dice = mask[:, i, :].unsqueeze(1), dice_pred[:, i] + loss += self.calculate_loss(single_mask, prev_masks, single_dice, label, labels_input, iter_num) + else: + loss = self.calculate_loss(mask, prev_masks, dice_pred[:, 0], label, labels_input, iter_num) + + # ======================================================== + if self.args.refine: + if self.args.no_detach: + mask_refine, error_map = self.sam.mask_decoder.refine(image, mask_best, + [self.click_points, self.click_labels], + mask_best) + else: + mask_refine, error_map = self.sam.mask_decoder.refine(image, mask_best, [self.click_points, self.click_labels], mask_best.detach()) + print('dice before refine {} and after {}'.format( + self.get_dice_score(torch.sigmoid(mask_best), label), + self.get_dice_score(torch.sigmoid(mask_refine), label))) + + # ======================================================== + loss += self.loss_segmentation(mask_refine, label) * 1 + + mask_best = mask_refine + + # ======================================================== + else: + if self.args.refine: + if self.args.no_detach: + mask_refine, error_map = self.sam.mask_decoder.refine(image, mask_best, + [self.click_points, self.click_labels], + mask_best) + else: + mask_refine, error_map = self.sam.mask_decoder.refine(image, mask_best, + [self.click_points, self.click_labels], + mask_best.detach()) + if iter_num == iter_nums - 1 or iter_num == 0: + self.logger.info('dice before refine {} and after {}, label 0: {}, label 1: {}'.format( + self.get_dice_score(torch.sigmoid(mask_best), label), self.get_dice_score(torch.sigmoid(mask_refine), label), + str(labels_input.numel() - torch.count_nonzero(labels_input)), str(torch.count_nonzero(labels_input)) ) ) + mask_best = mask_refine + loss = self.get_dice_score(torch.sigmoid(mask_best), label) + + return_loss += loss + prev_masks = mask_best + + if return_each_iter: + return_mask_total_iter[iter_num, :] = mask_best + + if return_each_iter: + return return_loss / iter_nums, return_mask_total_iter + else: + return return_loss / iter_nums, prev_masks + + def get_points(self, prev_masks, label, train_mode=True): + mode = 'train' if train_mode else 'validation' + + batch_points, batch_labels = self.get_next_point(prev_masks, label, mode=mode) + + points_co = torch.cat(batch_points, dim=0).to(self.args.device) # b x num_clicks x 3 + points_la = torch.cat(batch_labels, dim=0).to(self.args.device) # b x num_clicks x 1 + + self.click_points.append(points_co) + self.click_labels.append(points_la) + + points_input = points_co + labels_input = points_la + + bbox_coords = _bbox_mask(label[:, 0, :], mode=mode, dynamic=self.args.dynamic_box).to(self.args.device) if self.args.use_box else None + + return points_input, labels_input, bbox_coords + + def get_next_point(self, prev_seg, label, mode='train'): # prev_seg --> probability + batch_points = [] + batch_labels = [] + + pred_masks = (prev_seg > 0.5) + true_masks = (label > 0) + fn_masks = torch.logical_and(true_masks, torch.logical_not(pred_masks)) + fp_masks = torch.logical_and(torch.logical_not(true_masks), pred_masks) + + to_point_mask = torch.logical_or(fn_masks, fp_masks) + + + # do_scribble = random.random() + # sample_method = random.choice(['line', 'center', 'default']) + sample_method = 'center' + scribble_types = { + 'line': 'LineScribble', + 'center': 'CenterlineScribble', + 'default': 'ContourScribble' + } + + def create_scribble_mask(scribble_type, data): + scribble_object = getattr(scribble, scribble_type)() + scribble_mask = scribble_object.batch_scribble(data).permute(1, 2, 3, 0) + return scribble_mask > 0 + + + points_list = [len(torch.argwhere(to_point_mask[i])) for i in range(to_point_mask.size(0))] + points_min = min(points_list) + num_clicks = self.args.num_clicks if mode == 'train' else self.args.num_clicks_validation + click_size = points_min if num_clicks > points_min else num_clicks + dynamic_size = random.randint(1, click_size) if self.args.dynamic and mode == 'train' else click_size + print(f"num_clicks {num_clicks} points_length: {points_min} dynamic_size: {dynamic_size}") + + for i in range(label.shape[0]): + bp_list, bl_list = [], [] + points = torch.argwhere(to_point_mask[i]) + + point_index = np.random.choice(len(points), size=dynamic_size, replace=False) + points_select = points[point_index] # each row tensor([0, x, y, z]), size --> num_clicks x 4 + + for click_index in range(dynamic_size): + point = points_select[click_index] + if fn_masks[i, 0, point[1], point[2], point[3]]: + is_positive = True + else: + is_positive = False + + bp = point[1:].clone().detach().reshape(1, 1, 3) + bl = torch.tensor([int(is_positive), ]).reshape(1, 1) + bp_list.append(bp) + bl_list.append(bl) + + if self.args.use_scribble: + fg, bg_orig = fn_masks[i].permute(3, 0, 1, 2).float(), fp_masks[i].permute(3, 0, 1, 2).float() + + # ====== with the purpose of efficiency only for first few epochs ====== + bbx = _bbox_mask(label[i, 0, :].unsqueeze(0)) + diff_ = 15 + i_min, i_max = bbx[:, :, 0], bbx[:, :, 3] + j_min, j_max = bbx[:, :, 1], bbx[:, :, 4] + k_min, k_max = bbx[:, :, 2], bbx[:, :, 5] + if max(0, i_min - diff_) < min(i_max + diff_, 126): + i_min, i_max = max(0, i_min - diff_), min(i_max + diff_, 126) + if max(0, j_min - diff_) < min(j_max + diff_, 126): + j_min, j_max = max(0, j_min - diff_), min(j_max + diff_, 126) + if max(0, k_min - diff_) < min(k_max + diff_, 126): + k_min, k_max = max(0, k_min - diff_), min(k_max + diff_, 126) + + bg_mask = torch.zeros_like(bg_orig).permute(1, 2, 3, 0) + bg_mask[:, i_min:i_max, j_min:j_max, k_min:k_max] = 1 + bg = bg_orig * bg_mask.permute(3, 0, 1, 2) + print('filter out voxels: {}'.format(torch.count_nonzero(bg_orig) - torch.count_nonzero(bg))) + + scribble_type = scribble_types.get(sample_method, scribble_types['default']) + scribble_mask_fg = create_scribble_mask(scribble_type, fg) + + limit_num = 500 + if torch.count_nonzero(scribble_mask_fg) >= limit_num + 50: + a = torch.argwhere(scribble_mask_fg).size(0) - limit_num + random_number = random.randint(0, a) + fg_coors = torch.argwhere(scribble_mask_fg)[:, 1:].unsqueeze(0)[:, random_number: random_number + limit_num, :] # for computation only + else: + fg_coors = torch.argwhere(scribble_mask_fg)[:, 1:].unsqueeze(0) + + fg_coors_label = torch.ones(1, fg_coors.size(1)) + bp_list.append(fg_coors) + bl_list.append(fg_coors_label) + + + scribble_mask_bg = create_scribble_mask(scribble_type, bg) + if torch.count_nonzero(scribble_mask_bg) >= limit_num + 50: # dynamic_size is 50 + a = torch.argwhere(scribble_mask_bg).size(0) - limit_num + random_number = random.randint(0, a) + bg_coors = torch.argwhere(scribble_mask_bg)[:, 1:].unsqueeze(0)[:, random_number: random_number + limit_num, :] + else: + bg_coors = torch.argwhere(scribble_mask_bg)[:, 1:].unsqueeze(0) + + bg_coors_label = torch.zeros(1, bg_coors.size(1)) + bp_list.append(bg_coors) + bl_list.append(bg_coors_label) + + batch_points.append(torch.cat(bp_list, dim=1)) + batch_labels.append(torch.cat(bl_list, dim=1)) + + # for scribble + if self.args.use_scribble: + smallest_n = min(tensor.size(1) for tensor in batch_labels) + batch_points = [tensor[:, :smallest_n] if tensor.size(1) > smallest_n else tensor for tensor in batch_points] + batch_labels = [tensor[:, :smallest_n] if tensor.size(1) > smallest_n else tensor for tensor in batch_labels] + + # # Check the shapes of the adjusted tensors + # for i, tensor in enumerate(batch_points): + # print(f"Tensor {i + 1} shape: {tensor.shape}") + + print('First batch: fn: {:.4f}, fp: {:.4f}, label 0: {}, label 1: {}'.format( + torch.count_nonzero(fn_masks[0]) / torch.count_nonzero(true_masks[0]), + torch.count_nonzero(fp_masks[0]) / torch.count_nonzero(true_masks[0]), + str(batch_labels[0].numel() - torch.count_nonzero(batch_labels[0])), + str(torch.count_nonzero(batch_labels[0])) + ) + ) + print('--- ===================================== ---') + print('--- above before model, below after model ---') + print('--- ===================================== ---') + return batch_points, batch_labels + + def iteration_forward(self, sam_model, features, image_embedding, prev_masks, points=None, boxes=None): + prev_masks = F.interpolate(prev_masks, scale_factor=0.25) + features = [features[i].to(self.args.device) for i in range(0, len(features))] + + new_point_embedding, new_image_embedding = sam_model.prompt_encoder( + points=points, + boxes=boxes, + masks=prev_masks, + image_embeddings=image_embedding.to(self.args.device) + ) + + mask, dice_pred = sam_model.mask_decoder( + prompt_embeddings=new_point_embedding, # (B, 2, 256) + image_embeddings=new_image_embedding, # (B, 256, 64, 64) + feature_list=features, + ) + return mask, dice_pred + + + + + + + + + diff --git a/src/processor/trainer_basic.py b/src/processor/trainer_basic.py new file mode 100644 index 0000000000000000000000000000000000000000..8e8d80b90823f3443085d99fc36143ca0755a947 --- /dev/null +++ b/src/processor/trainer_basic.py @@ -0,0 +1,317 @@ +from abc import abstractmethod +import torch +import numpy as np +from torch.optim import AdamW, lr_scheduler +from src.config.config_setup import build_model, get_dataloader +from monai.losses import DiceCELoss, DiceLoss +import torch.nn as nn +from src.utils.util import save_checkpoint +import time +import os +import torch.distributed as dist +from torch.cuda import amp +import torchio as tio + + +class Trainer_basic(object): + def __init__(self, args, logger): + self.args = args + self.logger = logger + + a = time.time() + use_small = True if self.args.use_small_dataset else False + self.train_data, self.val_data = get_dataloader(args, split='train', use_small=use_small), get_dataloader(args, split='val', use_small=use_small) + if self.args.use_sam3d_turbo: + self.sam = build_model(args, checkpoint='../src/ckpt/sam_med3d_turbo.pth') + else: + self.sam = build_model(args) + if self.args.ddp: + self.sam = self.sam.module + + self.best_dice, self.best_epoch, self.start_epoch = 0, 0, 0 + self.pooling_layer = nn.AvgPool3d((self.args.boundary_kernel_size, self.args.boundary_kernel_size, 1), stride=1, + padding=(int((self.args.boundary_kernel_size - 1) / 2), + int((self.args.boundary_kernel_size - 1) / 2), + 0)).cuda() + + self.setup() + print('dataloaders are created, models are loaded, and others are set, spent {} for rank {}' + .format(round(time.time() - a, 2), self.args.rank)) + + + def run(self): + self.scaler = amp.GradScaler() + for epoch_num in range(self.start_epoch, self.args.max_epoch): + self.sam.train() + if self.args.ddp: + # dist.barrier() # set a barrier until all processes are at same point + self.train_data.sampler.set_epoch(epoch_num) + + self.train(epoch_num) + if self.args.ddp and self.args.rank == 0: + print('doing validation on rank=0') + current_mean_dice = self.validate(epoch_num) if self.args.data != 'lits' else self.validate_sliding_window(epoch_num) + else: + current_mean_dice = self.validate(epoch_num) if self.args.data != 'lits' else self.validate_sliding_window(epoch_num) + # https://medium.com/codex/a-comprehensive-tutorial-to-pytorch-distributeddataparallel-1f4b42bb1b51 + # if self.args.ddp: + # dist.barrier() + self.save_model(current_mean_dice, epoch_num) + + @abstractmethod + def forward(self, model, image, label, iter_nums, train, return_each_iter): + pass + + def train(self, epoch_num): + loss_summary = [] + for idx, (image, label, image_path) in enumerate(self.train_data): + self.optimizer.zero_grad() + + # increase speed based on gradient accumulation + # my_context = self.sam.no_sync if self.args.rank != -1 and idx % self.args.accumulation_steps != 0 else nullcontext + # with my_context(): + image, label = image.to(self.args.device), label.to(self.args.device) + with amp.autocast(): + loss, _ = self.forward(self.sam, image, label, iter_nums=self.args.iter_nums, train=True) + + loss_summary.append(loss.detach().cpu().numpy()) + + self.scaler.scale(loss).backward() + self.scaler.unscale_(self.optimizer) + torch.nn.utils.clip_grad_norm_(self.sam.parameters(), 1.0) + self.scaler.step(self.optimizer) + self.scaler.update() + + print('epoch: {}/{}, iter: {}/{}'.format(epoch_num, self.args.max_epoch, idx, len(self.train_data)) + + ": loss:" + str(round(loss_summary[-1].flatten()[0], 4)) + + ": rank:" + str(self.args.rank)) + self.logger.info( + 'epoch: {}/{}, iter: {}/{}'.format(epoch_num, self.args.max_epoch, idx, len(self.train_data)) + + ": loss:" + str(round(loss_summary[-1].flatten()[0], 4)) + + ": rank:" + str(self.args.rank)) + print('current lr: {}'.format(self.optimizer.param_groups[0]["lr"])) + # If the first iteration creates NaN gradients (e.g. due to a high scaling factor and thus gradient overflow), + # the optimizer.step() will be skipped and you might get this warning. + self.update_lr(epoch_num, warm_up=self.args.warm_up) + self.logger.info("- Train metrics: " + str(np.mean(loss_summary))) + + def validate_sliding_window(self, epoch_num): + self.sam.eval() + with torch.no_grad(): + dice_list = [] + for idx, batch in enumerate(self.val_data): + if isinstance(batch, (list, tuple)) and len(batch) >= 2: + subject_dict, image_path = batch[0], batch[1] + else: + raise ValueError("Unexpected validation batch format for lits dataset") + if subject_dict['label']['data'][0].sum() <= 0: + self.logger.info(image_path, 'label volume too small, and it has been skipped for validation') + continue + mean_dice = 0 + subject = tio.Subject(image=tio.ScalarImage(tensor=subject_dict['image']['data'][0].float(), affine=subject_dict['image']['affine'][0]), + label=tio.LabelMap(tensor=subject_dict['label']['data'][0].float(), affine=subject_dict['label']['affine'][0])) + grid_sampler = tio.inference.GridSampler(subject, 128, 16) + patch_loader = torch.utils.data.DataLoader(grid_sampler, batch_size=1) + aggregator = tio.inference.GridAggregator(grid_sampler) + + masks_final = torch.zeros([self.args.iter_nums, len(patch_loader), 128, 128, 128]) + location_list = [] + for idx_patch, patches_batch in enumerate(patch_loader): + image, label = patches_batch['image'][tio.DATA].to(self.args.device), patches_batch['label'][tio.DATA].to(self.args.device) + locations = patches_batch[tio.LOCATION] + + if torch.count_nonzero(label) == 0: + print('found empty patch') + masks = torch.zeros([self.args.iter_nums, 1, 128, 128, 128]) + else: + _, masks = self.forward(self.sam, image, label, iter_nums=self.args.iter_nums, train=False, return_each_iter=True) + print(masks.shape) + masks_final[:, idx_patch, :] = masks.squeeze(1) + location_list.append(locations) + + mean_dice_sub_list = [] + for iter_num in range(self.args.iter_nums): + for l_i in range(0, len(location_list)): + location = location_list[l_i] + a = masks_final[iter_num, l_i, :].unsqueeze(0).unsqueeze(0) + mask = a + aggregator.add_batch(mask, location) + masks_iter_final = aggregator.get_output_tensor() + mean_dice_sub_list.append(self.get_dice_score(torch.sigmoid(masks_iter_final), subject.label.data)) + + mean_dice_sub = np.mean(mean_dice_sub_list) + mean_dice += mean_dice_sub + dice_list.append(mean_dice) + print(mean_dice_sub) + self.logger.info( + 'epoch: {}/{}, iter: {}/{}'.format(epoch_num, self.args.max_epoch, idx, len(self.val_data)) + + ' subject: ' + str(image_path) + ' mean dice over clicks:' + str(mean_dice) + + ' stich left and right side (total size): ' + str(label.size(1))) + self.logger.info("- Val metrics mean dice: " + str(np.mean(dice_list))) + return dice_list + + def validate(self, epoch_num): + self.sam.eval() + device = self.args.device + with torch.no_grad(): + dice_list = [] + for idx, (image, label, image_path, _) in enumerate(self.val_data): + mean_dice = 0 + image, label = image.to(device), label.to(device) + #with amp.autocast(): + + if self.args.data == 'kits' and image.size(1) > 1: + label_final, masks_final = torch.zeros([1, 1, int(image.size(2) * 2), image.size(3), image.size(4)]), torch.zeros([self.args.iter_nums, 1, int(image.size(2) * 2), image.size(3), image.size(4)]) + + for channel_num in range(image.size(1)): + _, masks = self.forward(self.sam, image[:, channel_num, :].unsqueeze(1), label[:, channel_num, :].unsqueeze(1), iter_nums=self.args.iter_nums, train=False, return_each_iter=True) + start_point, end_pont = 0 + channel_num * image.size(2), image.size(2) + channel_num * image.size(2) + + masks_final[:, 0, start_point: end_pont, :] = masks[:, 0, :] + label_final[0, 0, start_point: end_pont, :] = label[0, channel_num, :] + + mean_dice_sub_list = [] + for iter_num in range(self.args.iter_nums): + mean_dice_sub_list.append(self.get_dice_score(torch.sigmoid(masks_final[iter_num]), label_final[0])) + mean_dice_sub = np.mean(mean_dice_sub_list) + else: + mean_dice_sub, masks = self.forward(self.sam, image, label, iter_nums=self.args.iter_nums, train=False) + + mean_dice += mean_dice_sub + dice_list.append(mean_dice) + print(mean_dice_sub) + self.logger.info( + 'epoch: {}/{}, iter: {}/{}'.format(epoch_num, self.args.max_epoch, idx, len(self.val_data)) + + ' subject: ' + str(image_path) + ' mean dice over clicks:' + str(mean_dice) + + ' stich left and right side (total size): ' + str(label.size(1))) + self.logger.info("- Val metrics mean dice: " + str(np.mean(dice_list))) + return dice_list + + + def calculate_loss(self, mask, prev_masks, pred_dice, label, labels_input, iter_num, inter=False): + mask_probs, prev_masks_prob = torch.sigmoid(mask), torch.sigmoid(prev_masks) + + seg_edge = abs(label - self.pooling_layer(label)) + mask_edge = abs(mask_probs - self.pooling_layer(mask_probs)) + edge_number = torch.count_nonzero(mask_edge) + 1 + + pred_dice_score_loss = 0 + for batch_index in range(mask.size(0)): + target_dice = 1 - self.loss_validation(mask[batch_index].unsqueeze(0), label[batch_index].unsqueeze(0))[0,0,0,0,0] + + target_dice = torch.tensor([target_dice])[0].to(self.args.device) + pred_dice_score_loss += self.loss_boundary(pred_dice[batch_index], target_dice) * 1 + + loss = self.loss_segmentation(mask, label) + self.loss_boundary(mask_edge, seg_edge) * 10 + loss = loss + pred_dice_score_loss + return loss + + def get_dice_score(self, prev_masks, label, batch=False): + def compute_dice(mask_pred, mask_gt): + mask_threshold = 0.5 + + mask_pred = (mask_pred > mask_threshold) + mask_gt = (mask_gt > 0) + + volume_sum = mask_gt.sum() + mask_pred.sum() + if volume_sum == 0: + return np.NaN + volume_intersect = (mask_gt & mask_pred).sum() + return 2 * volume_intersect / volume_sum + + pred_masks = (prev_masks > 0.5) + true_masks = (label > 0) + dice_list = [] + for i in range(true_masks.shape[0]): + dice_list.append(compute_dice(pred_masks[i], true_masks[i])) + if batch: + return dice_list + else: + return (sum(dice_list) / len(dice_list)).item() + + def save_model(self, current_dice, epoch_num): + is_best = False + if np.mean(current_dice) > self.best_dice: + self.best_dice = np.mean(current_dice) + self.best_epoch = epoch_num + is_best = True + + if not self.args.ddp or (self.args.ddp and self.args.rank == 0): + save_checkpoint({"epoch": epoch_num + 1, + "best_val_loss": self.best_dice, + "model_state_dict": self.sam.state_dict(), + "optimizer": self.optimizer.state_dict(), + "lr_scheduler": self.lr_scheduler.state_dict(), + }, + is_best=is_best, + checkpoint=self.args.save_dir) + self.logger.info("- Val metrics best mean dice: {} at epoch {} " .format(self.best_dice, self.best_epoch)) + + def setup(self): + self.setup_loss() + self.setup_optimizier() + self.setup_scheduler() + + if self.args.resume: + if self.args.ddp: + dist.barrier() + checkpoint = 'best.pth.tar' if self.args.resume_best else 'last.pth.tar' + ckpt = torch.load(os.path.join(self.args.save_dir, checkpoint)) + + self.start_epoch = ckpt["epoch"] + self.best_epoch = self.start_epoch + self.best_dice = ckpt["best_val_loss"] + self.sam.load_state_dict(ckpt["model_state_dict"], strict=True) + self.optimizer.load_state_dict(ckpt["optimizer"]) + #self.lr_scheduler.load_state_dict(ckpt['lr_scheduler'])lr_scheduler_regular + self.lr_scheduler_regular.load_state_dict(ckpt['lr_scheduler']) + + + self.logger.info(f"Resume training from epoch {self.start_epoch}!") + del ckpt + torch.cuda.empty_cache() + + def setup_loss(self): + self.loss_boundary = nn.MSELoss() + self.mse_none = nn.MSELoss(reduction='none') + + self.loss_segmentation = DiceCELoss(sigmoid=True, squared_pred=True, reduction='mean') + self.loss_Dice = DiceLoss(sigmoid=True) + self.loss_validation = DiceLoss(sigmoid=True, reduction='none') + + self.l1 = nn.L1Loss() + self.inter_loss = DiceCELoss(sigmoid=True, squared_pred=True, reduction='mean') + + def setup_optimizier(self): + self.optimizer = AdamW([ + {'params': self.sam.image_encoder.parameters()}, + {'params': self.sam.prompt_encoder.parameters()}, + {'params': self.sam.mask_decoder.parameters()}, + ], lr=self.args.lr) + + def setup_scheduler(self): + if self.args.lr_scheduler == 'linear': + self.lr_scheduler_regular = lr_scheduler.LinearLR(self.optimizer, start_factor=1.0, end_factor=0.01, total_iters=500) + else: + self.lr_scheduler_regular = lr_scheduler.ExponentialLR(self.optimizer, gamma=0.98) + if self.args.warm_up: + self.linear_warmup_scheduler = lr_scheduler.LinearLR(self.optimizer, start_factor=0.01, end_factor=1.0, total_iters=10) + + def update_lr(self, epoch, warmup_epoch=10, warm_up=False): + if warm_up: + if epoch < warmup_epoch: + self.lr_scheduler = self.linear_warmup_scheduler + else: + self.lr_scheduler = self.lr_scheduler_regular + else: + self.lr_scheduler = self.lr_scheduler_regular + self.lr_scheduler.step() + + + + + + + + + diff --git a/src/processor/validater.py b/src/processor/validater.py new file mode 100644 index 0000000000000000000000000000000000000000..b54b462afccac1a71375056467d81b6b8c04743e --- /dev/null +++ b/src/processor/validater.py @@ -0,0 +1,120 @@ +import torch +import torch.nn.functional as F +# from src.utils.util import get_points +import numpy as np + + +def validater(args, val_data, logger, epoch_num, sam, + loss_validation): + patch_size = args.rand_crop_size[0] + device = args.device + with torch.no_grad(): + loss_summary = [] + #for idx, data in enumerate(val_data): + #img, label = data['image'].to(device), data['label'].to(device) + for idx, (image, label, _) in enumerate(val_data): + # import torchio as tio + # norm_transform = tio.ZNormalization(masking_method=lambda x: x > 0) + # image = norm_transform(image.squeeze(dim=1)) # (N, C, W, H, D) + # image = image.unsqueeze(dim=1) + + image, label = image.to(device), label.to(device) + + image_embedding = sam.image_encoder(image) + prev_masks = interaction(args, sam, image_embedding, label, num_clicks=11) + + masks = prev_masks + loss = loss_validation(masks, label) + loss_summary.append(loss.detach().cpu().numpy()) + logger.info( + 'epoch: {}/{}, iter: {}/{}'.format(epoch_num, args.max_epoch, idx, len(val_data)) + ": loss:" + str( + loss_summary[-1].flatten()[0])) + logger.info("- Val metrics: " + str(np.mean(loss_summary))) + return loss_summary + + +def get_next_click3D_torch_2(prev_seg, gt_semantic_seg): + + mask_threshold = 0.5 + + batch_points = [] + batch_labels = [] + # dice_list = [] + + pred_masks = (prev_seg > mask_threshold) + true_masks = (gt_semantic_seg > 0) + fn_masks = torch.logical_and(true_masks, torch.logical_not(pred_masks)) + fp_masks = torch.logical_and(torch.logical_not(true_masks), pred_masks) + + to_point_mask = torch.logical_or(fn_masks, fp_masks) + + for i in range(gt_semantic_seg.shape[0]): + + points = torch.argwhere(to_point_mask[i]) + point = points[np.random.randint(len(points))] + # import pdb; pdb.set_trace() + if fn_masks[i, 0, point[1], point[2], point[3]]: + is_positive = True + else: + is_positive = False + + bp = point[1:].clone().detach().reshape(1, 1, 3) + bl = torch.tensor([int(is_positive), ]).reshape(1, 1) + batch_points.append(bp) + batch_labels.append(bl) + + return batch_points, batch_labels +def get_points(args, prev_masks, gt3D, click_points, click_labels): + batch_points, batch_labels = get_next_click3D_torch_2(prev_masks, gt3D) + + points_co = torch.cat(batch_points, dim=0).to(args.device) + points_la = torch.cat(batch_labels, dim=0).to(args.device) + + click_points.append(points_co) + click_labels.append(points_la) + + points_multi = torch.cat(click_points, dim=1).to(args.device) + labels_multi = torch.cat(click_labels, dim=1).to(args.device) + + # if self.args.multi_click: + # points_input = points_multi + # labels_input = labels_multi + # else: + points_input = points_co + labels_input = points_la + return points_input, labels_input, click_points, click_labels + +def batch_forward(args, sam_model, image_embedding, gt3D, low_res_masks, points=None): + + sparse_embeddings, dense_embeddings = sam_model.prompt_encoder( + points=points, + boxes=None, + masks=low_res_masks, + ) + low_res_masks, iou_predictions = sam_model.mask_decoder( + image_embeddings=image_embedding.to(args.device), # (B, 256, 64, 64) + image_pe=sam_model.prompt_encoder.get_dense_pe(), # (1, 256, 64, 64) + sparse_prompt_embeddings=sparse_embeddings, # (B, 2, 256) + dense_prompt_embeddings=dense_embeddings, # (B, 256, 64, 64) + multimask_output=False, + ) + prev_masks = F.interpolate(low_res_masks, size=gt3D.shape[-3:], mode='trilinear', align_corners=False) + return low_res_masks, prev_masks + +def interaction(args, sam_model, image_embedding, gt3D, num_clicks): + # return_loss = 0 + prev_masks = torch.zeros_like(gt3D).to(gt3D.device) + random_insert = np.random.randint(2, 9) + + click_points, click_labels = [], [] + for num_click in range(num_clicks): + points_input, labels_input, click_points, click_labels = get_points(args, prev_masks, gt3D, click_points, click_labels) + + if num_click == random_insert or num_click == num_clicks - 1: + prev_masks = batch_forward(args, sam_model, image_embedding, gt3D, prev_masks, points=None) + else: + prev_masks = batch_forward(args, sam_model, image_embedding, gt3D, prev_masks, points=[points_input, labels_input]) + # loss = self.seg_loss(prev_masks, gt3D) + # return_loss += loss + #return prev_masks, return_loss + return prev_masks \ No newline at end of file diff --git a/src/test.py b/src/test.py new file mode 100644 index 0000000000000000000000000000000000000000..79f85f041ed0ce97f1c1f2308c40d2b5b47402a6 --- /dev/null +++ b/src/test.py @@ -0,0 +1,546 @@ +import logging +import os.path +import torch +from utils.util import setup_logger +from config.config_args import * +import numpy as np +from torch.backends import cudnn +from src.config.config_setup import build_model, get_dataloader +import time, random +import torch.nn.functional as F +from src.utils.util import _bbox_mask +from src.utils import scribble, boundary_selection +import torchio as tio +import surface_distance +from surface_distance import metrics + +def init_seeds(seed=0, cuda_deterministic=True): + random.seed(seed) + np.random.seed(seed) + torch.manual_seed(seed) + torch.cuda.manual_seed(seed) + torch.cuda.manual_seed_all(seed) + # Speed-reproducibility tradeoff https://pytorch.org/docs/stable/notes/randomness.html + if cuda_deterministic: # slower, more reproducible + cudnn.deterministic = True + cudnn.benchmark = False + else: # faster, less reproducible + cudnn.deterministic = False + cudnn.benchmark = True + + +class Tester(object): + def __init__(self, args, logger, ckpt): + self.args = args + self.logger = logger + + self.val_data = get_dataloader(args, split='test') + + a = time.time() + print('loading models and setting up') + self.sam = build_model(args, checkpoint=ckpt) + + self.image_encoder = self.sam.image_encoder + self.prompt_encoder = self.sam.prompt_encoder + self.mask_decoder = self.sam.mask_decoder + + # self._load_pretrain_model(ckpt) + + def _load_pretrain_model(self, ckpt): + model_dict = torch.load(ckpt, map_location=self.args.device) + state_dict = model_dict + self.sam.load_state_dict(state_dict['model_state_dict']) + + def validate(self, epoch_num): + self.image_encoder.eval() + self.prompt_encoder.eval() + self.mask_decoder.eval() + + if self.args.data == 'lits': + loss = self.validater_sliding_window(epoch_num) + else: + loss = self.validater(epoch_num) + return loss + + + def validater_sliding_window(self, epoch_num): + with torch.no_grad(): + dice_summary, nsd_summary = [], [] + for idx, (subject_dict, image_path, subject_dict_save) in enumerate(self.val_data): + if subject_dict['label']['data'][0].sum() <= 0: + self.logger.info(image_path, 'label volume too small, and it has been skipped for validation') + continue + mean_dice = 0 + subject = tio.Subject(image=tio.ScalarImage(tensor=subject_dict['image']['data'][0].float(), affine=subject_dict['image']['affine'][0]), + label=tio.LabelMap(tensor=subject_dict['label']['data'][0].float(), affine=subject_dict['label']['affine'][0])) + grid_sampler = tio.inference.GridSampler(subject, 128, 16) + patch_loader = torch.utils.data.DataLoader(grid_sampler, batch_size=1) + aggregator = tio.inference.GridAggregator(grid_sampler, overlap_mode='average') + + + for idx_patch, patches_batch in enumerate(patch_loader): + image, label = patches_batch['image'][tio.DATA].to(self.args.device), patches_batch['label'][tio.DATA].to(self.args.device) + print(torch.count_nonzero(label)) + print('how many voxels') + locations = patches_batch[tio.LOCATION] + + if torch.count_nonzero(label) == 0: + print('found empty patch') + masks = torch.zeros([1, 1, 128, 128, 128]) + else: + # _, masks = self._interaction(self.sam, image, label, iter_nums=self.args.iter_nums, train=False, return_each_iter=True) + _, masks = self._interaction(self.sam, image, label, iter_nums=self.args.iter_nums, train=False) + + aggregator.add_batch(masks, locations) + masks_iter_final = aggregator.get_output_tensor() + mean_dice_sub = self.get_dice_score(torch.sigmoid(masks_iter_final), subject.label.data) + + mean_dice += mean_dice_sub + dice_summary.append(mean_dice) + + ssd = surface_distance.compute_surface_distances( + (subject.label.data == 1)[0].cpu().numpy(), + (torch.sigmoid(masks_iter_final) > 0.5)[0].cpu().numpy(), + spacing_mm=(1,1,1) + ) + nsd = metrics.compute_surface_dice_at_tolerance(ssd, 5) + + nsd_summary.append(nsd) + print(mean_dice_sub) + + if self.args.save_predictions: + save_test_dir = os.path.join(self.args.save_test_dir, 'prism_prediction', self.args.data, self.args.save_name, str(self.args.iter_nums)) + if not os.path.exists(save_test_dir): + os.makedirs(save_test_dir) + a = torch.sigmoid(masks_iter_final) > 0.5 + a = a[0].float().cpu().numpy() + import SimpleITK as sitk + prediction = sitk.GetImageFromArray(a) + if self.args.data == 'lits': + base_name = image_path[0].split('/')[-2] + '_' +image_path[0].split('/')[-1] + if self.args.refine_test: + pred_name = base_name.replace('.nii.gz', '._pred.nii.gz') + else: + pred_name = base_name.replace('.nii.gz', '._pred_no_refine.nii.gz') + save_path = os.path.join(save_test_dir, pred_name) + sitk.WriteImage(prediction, save_path) + + if self.args.iter_nums == 1: + if self.args.refine_test: + image_name = base_name.replace('.nii.gz', '._image.nii.gz') + else: + image_name = base_name.replace('.nii.gz', '._image_no_refine.nii.gz') + b = subject_dict_save['image']['data'][0][0].float().cpu().numpy() + image_save = sitk.GetImageFromArray(b) + sitk.WriteImage(image_save, os.path.join(save_test_dir, image_name)) + + if self.args.refine_test: + label_name = base_name.replace('.nii.gz', '._label.nii.gz') + else: + label_name = base_name.replace('.nii.gz', '._label_no_refine.nii.gz') + c = subject_dict_save['label']['data'][0][0].float().cpu().numpy() + label_save = sitk.GetImageFromArray(c) + sitk.WriteImage(label_save, os.path.join(save_test_dir, label_name)) + + + + self.logger.info( + 'epoch: {}/{}, iter: {}/{}'.format(epoch_num, self.args.max_epoch, idx, len(self.val_data)) + + ' subject: ' + str(image_path) + ' mean nsd over clicks:' + str(nsd) + ' mean dice over clicks:' + str(mean_dice) + + ' stich left and right side (total size): ' + str(label.size(1))) + self.logger.info("- Val metrics mean dice: " + str(np.mean(dice_summary)) + "- Val metrics nsd: " + str(np.mean(nsd_summary))) + + from scipy import stats + data = dice_summary + # Calculate mean + mean = np.mean(data) + # Calculate standard error of the mean (SEM) + sem = stats.sem(data) + # Determine the t-value for the 95% confidence interval + # Degrees of freedom + df = len(data) - 1 + # t-value for 95% CI + t_value = stats.t.ppf(0.975, df) + # Calculate the margin of error + margin_of_error = sem * t_value + # Calculate the 95% CI + ci_lower = mean - margin_of_error + ci_upper = mean + margin_of_error + self.logger.info("- ci_lower dice: " + str(ci_lower) + "- ci_lower dice: " + str(ci_upper)) + + return dice_summary + + def validater(self, epoch_num): + device = self.args.device + with torch.no_grad(): + loss_summary, nsd_summary = [], [] + # for idx, data in enumerate(val_data): + # img, label = data['image'].to(device), data['label'].to(device) + for idx, (image, label, image_path, subject_dict_save) in enumerate(self.val_data): + + image, label = image.to(device), label.to(device) + + if self.args.data == 'kits' and image.size(1) > 1: + label_final, masks_final = torch.zeros([1, 1, int(image.size(2) * 2), image.size(3), image.size(4)]), torch.zeros([self.args.iter_nums, 1, int(image.size(2) * 2), image.size(3), image.size(4)]) + + for channel_num in range(image.size(1)): + masks = self.interaction(self.sam, image[:, channel_num, :].unsqueeze(1), label[:, channel_num, :].unsqueeze(1)) + start_point, end_pont = 0 + channel_num * image.size(2), image.size(2) + channel_num * image.size(2) + + masks_final[:, 0, start_point: end_pont, :] = masks[:, 0, :] + label_final[0, 0, start_point: end_pont, :] = label[0, channel_num, :] + + masks, label = masks_final, label_final + else: + masks = self.interaction(self.sam, image, label) + + # masks = self.interaction(self.sam, image, label) + + dice = self.get_dice_score(torch.sigmoid(masks), label) + loss_summary.append(dice) + + ssd = surface_distance.compute_surface_distances( + (label == 1)[0][0].cpu().numpy(), + (torch.sigmoid(masks) > 0.5)[0][0].cpu().numpy(), + spacing_mm=(1, 1, 1) + ) + nsd = metrics.compute_surface_dice_at_tolerance(ssd, 5) + + nsd_summary.append(nsd) + + if self.args.save_predictions: + save_test_dir = os.path.join(self.args.save_test_dir, 'prism_prediction', self.args.data, + self.args.save_name, str(self.args.iter_nums)) + if not os.path.exists(save_test_dir): + os.makedirs(save_test_dir) + a = torch.sigmoid(masks) > 0.5 + a = a.float().cpu().numpy() + import SimpleITK as sitk + prediction = sitk.GetImageFromArray(a) + if self.args.data == 'colon': + base_name = image_path[0].split('/')[-1] + else: + base_name = image_path[0].split('/')[-2] + '_' + image_path[0].split('/')[-1] + if self.args.refine_test: + pred_name = base_name.replace('.nii.gz', '._pred.nii.gz') + else: + pred_name = base_name.replace('.nii.gz', '._pred_no_refine.nii.gz') + save_path = os.path.join(save_test_dir, pred_name) + sitk.WriteImage(prediction, save_path) + + if self.args.iter_nums == 1: + if self.args.refine_test: + image_name = base_name.replace('.nii.gz', '._image.nii.gz') + else: + image_name = base_name.replace('.nii.gz', '._image_no_refine.nii.gz') + b = subject_dict_save['image']['data'][0][0].float().cpu().numpy() + image_save = sitk.GetImageFromArray(b) + sitk.WriteImage(image_save, os.path.join(save_test_dir, image_name)) + + if self.args.refine_test: + label_name = base_name.replace('.nii.gz', '._label.nii.gz') + else: + label_name = base_name.replace('.nii.gz', '._label_no_refine.nii.gz') + c = subject_dict_save['label']['data'][0][0].float().cpu().numpy() + label_save = sitk.GetImageFromArray(c) + sitk.WriteImage(label_save, os.path.join(save_test_dir, label_name)) + + self.logger.info( + 'epoch: {}/{}, iter: {}/{}'.format(epoch_num, self.args.max_epoch, idx, len(self.val_data)) + + ' subject: ' + str(image_path) + ' mean nsd over clicks:' + str(nsd) + ' mean dice over clicks:' + str(dice) + + ' stich left and right side (total size): ' + str(label.size(1))) + + self.logger.info("- Val metrics mean dice: " + str(np.mean(loss_summary)) + "- Val metrics nsd: " + str(np.mean(nsd_summary))) + from scipy import stats + data = loss_summary + # Calculate mean + mean = np.mean(data) + # Calculate standard error of the mean (SEM) + sem = stats.sem(data) + # Determine the t-value for the 95% confidence interval + # Degrees of freedom + df = len(data) - 1 + # t-value for 95% CI + t_value = stats.t.ppf(0.975, df) + # Calculate the margin of error + margin_of_error = sem * t_value + # Calculate the 95% CI + ci_lower = mean - margin_of_error + ci_upper = mean + margin_of_error + self.logger.info("- ci_lower dice: " + str(ci_lower) + "- ci_lower dice: " + str(ci_upper)) + + return loss_summary + + def get_next_click3D_torch_2(self, prev_seg, gt_semantic_seg): + + mask_threshold = 0.5 + + batch_points = [] + batch_labels = [] + # dice_list = [] + + pred_masks = (prev_seg > mask_threshold) + true_masks = (gt_semantic_seg > 0) + fn_masks = torch.logical_and(true_masks, torch.logical_not(pred_masks)) + fp_masks = torch.logical_and(torch.logical_not(true_masks), pred_masks) + print('fn: {}, fp: {}'.format(torch.count_nonzero(fn_masks) / torch.count_nonzero(true_masks), + torch.count_nonzero(fp_masks) / torch.count_nonzero(true_masks))) + to_point_mask = torch.logical_or(fn_masks, fp_masks) + #to_point_mask = fn_masks + for i in range(gt_semantic_seg.shape[0]): + bp_list, bl_list = [], [] + points = torch.argwhere(to_point_mask[i]) + if self.args.num_clicks > len(points): + click_size = len(points) + else: + click_size = self.args.num_clicks + + dynamic_size = random.randint(1, click_size) if self.args.dynamic else click_size + + point_index = np.random.choice(len(points), size=dynamic_size, replace=False) + points_select = points[point_index] # each row tensor([0, x, y, z]), size --> num_clicks x 4 + # point = points[np.random.randint(len(points))] # tensor([0, x, y, z]) + for click_index in range(dynamic_size): + point = points_select[click_index] + if fn_masks[i, 0, point[1], point[2], point[3]]: + is_positive = True + else: + is_positive = False + + bp = point[1:].clone().detach().reshape(1, 1, 3) + bl = torch.tensor([int(is_positive), ]).reshape(1, 1) + bp_list.append(bp) + bl_list.append(bl) + + if self.args.use_scribble: + #sample_method = random.choice(['line', 'center', 'default']) + sample_method = 'center' + scribble_types = { + 'line': 'LineScribble', + 'center': 'CenterlineScribble', + 'default': 'ContourScribble' + } + + def create_scribble_mask(scribble_type, data): + scribble_object = getattr(scribble, scribble_type)() + scribble_mask = scribble_object.batch_scribble(data).permute(1, 2, 3, 0) + return scribble_mask > 0 + + # fg = gt_semantic_seg[i].permute(3, 0, 1, 2).float() + # bg = (torch.ones_like(pred_masks[i, :]).float() - gt_semantic_seg[i].float()).permute(3, 0, 1, 2) + fg, bg = fn_masks[0].permute(3, 0, 1, 2).float(), fp_masks[0].permute(3, 0, 1, 2).float() + + scribble_type = scribble_types.get(sample_method, scribble_types['default']) + + scribble_mask_fg = create_scribble_mask(scribble_type, fg) + #fg_coors = torch.argwhere(scribble_mask_fg)[:, 1:].unsqueeze(0)[:, 0: 100, :] # for computation only + fg_coors = torch.argwhere(scribble_mask_fg)[:, 1:].unsqueeze(0) + if self.args.efficient_scribble: + fg_coors = fg_coors[:, 0: 10000, :] # for computation only# for computation only + fg_coors_label = torch.ones(1, fg_coors.size(1)) + bp_list.append(fg_coors) + bl_list.append(fg_coors_label) + # x,y,z = bp_list[-1][0, 99, 0], bp_list[-1][0, 99, 1], bp_list[-1][0, 99, 2] + # print(gt_semantic_seg[i, 0, x,y,z]) + + #if sample_method == 'default': + if torch.count_nonzero(fp_masks) > 0: + scribble_mask_bg = create_scribble_mask(scribble_type, bg) + bg_coors = torch.argwhere(scribble_mask_bg)[:, 1:].unsqueeze(0) + if self.args.efficient_scribble: + bg_coors = bg_coors[:, 0: 10000, :] + bg_coors_label = torch.zeros(1, bg_coors.size(1)) + bp_list.append(bg_coors) + bl_list.append(bg_coors_label) + + batch_points.append(torch.cat(bp_list, dim=1)) + batch_labels.append(torch.cat(bl_list, dim=1)) + + smallest_n = min(tensor.size(1) for tensor in batch_labels) + batch_points = [tensor[:, :smallest_n] if tensor.size(1) > smallest_n else tensor for tensor in + batch_points] + batch_labels = [tensor[:, :smallest_n] if tensor.size(1) > smallest_n else tensor for tensor in + batch_labels] + + # Check the shapes of the adjusted tensors + for i, tensor in enumerate(batch_points): + print(f"Tensor {i + 1} shape: {tensor.shape}") + + + return batch_points, batch_labels + + def get_points(self, prev_masks, label): + batch_points, batch_labels = self.get_next_click3D_torch_2(prev_masks, label) + + points_co = torch.cat(batch_points, dim=0).to(self.args.device) + points_la = torch.cat(batch_labels, dim=0).to(self.args.device) + + self.click_points.append(points_co) + self.click_labels.append(points_la) + + points_input = points_co + labels_input = points_la + + bbox_coords = _bbox_mask(label[:, 0, :]).to(self.args.device) if self.args.use_box else None + return points_input, labels_input, bbox_coords + + + def batch_forward(self, sam_model, features, image_embedding, image, prev_masks, points=None, boxes=None): + prev_masks = F.interpolate(prev_masks, scale_factor=0.25) + features = [features[i].to(self.args.device) for i in range(0, len(features))] + + # sparse_embeddings --> (B, 2, embed_dim) 2 represents concat of coordination and its label + # dense_embeddings --> (B, embed_dim, W, H, D), whd values are customized + new_point_embedding, new_image_embedding = sam_model.prompt_encoder( + points=points, + boxes=boxes, + masks=prev_masks, + image_embeddings=image_embedding.to(self.args.device) + ) + + mask, pred_dice = sam_model.mask_decoder( + prompt_embeddings=new_point_embedding, # (B, 2, 256) + image_embeddings=new_image_embedding, # (B, 256, 64, 64) + feature_list=features, + ) + + return mask, pred_dice + + def interaction(self, sam_model, image, label): + image_embedding, feature_list = self.sam.image_encoder(image) + + self.click_points = [] + self.click_labels = [] + prev_masks = torch.zeros_like(label).to(label.device) + for iter_num in range(self.args.iter_nums): + prev_masks_sigmoid = torch.sigmoid(prev_masks) if iter_num > 0 else prev_masks + + points_input, labels_input, bbox_input = self.get_points(prev_masks_sigmoid, label) + mask, pred_dice = self.batch_forward(sam_model, feature_list, image_embedding, image, prev_masks, points=[points_input, labels_input], boxes=bbox_input) + + if self.args.multiple_outputs: + pred_best_dice, pred_dice_max_index = torch.max(pred_dice, dim=1) + mask_best = mask[:, pred_dice_max_index, :] + else: + mask_best, pred_best_dice = mask, pred_dice + # FIXME refine or not + if self.args.refine and self.args.refine_test: + mask_refine, error_map = self.sam.mask_decoder.refine(image, mask_best, [self.click_points, self.click_labels], mask_best.detach()) + print('dice before refine {} and after {}'.format( + self.get_dice_score(torch.sigmoid(mask_best), label), + self.get_dice_score(torch.sigmoid(mask_refine), label)) + ) + mask_best = mask_refine + + prev_masks = mask_best + dice = self.get_dice_score(torch.sigmoid(prev_masks).cpu().numpy(), label.cpu().numpy()) + print('---') + print(f'Dice: {dice:.4f}, pred_dice: {pred_best_dice}, label: {labels_input}') + + return prev_masks + + + + def _interaction(self, sam_model, image, label, iter_nums, train=False, return_each_iter=False): + if return_each_iter: + return_mask_total_iter = torch.zeros([iter_nums, 1, image.size(2), image.size(3), image.size(4)]) + + image_embedding, feature_list = self.sam.image_encoder(image) + self.click_points = [] + self.click_labels = [] + return_loss = 0 + prev_masks = torch.zeros_like(label, dtype=torch.float).to(label.device) + for iter_num in range(iter_nums): + prev_masks_sigmoid = torch.sigmoid(prev_masks) if iter_num > 0 else prev_masks + + if self.args.init_learning and iter_num == 0: + boundary, margin, content = boundary_selection.find_boundary_map(label) + use_content = True + for batch_index in range(label.size(0)): + if torch.count_nonzero(content[batch_index]) < self.args.num_clicks: + use_content = False + if use_content: + label_sample = content + else: + label_sample = label + else: + label_sample = label + + points_input, labels_input, box_input = self.get_points(prev_masks_sigmoid, label_sample, label) + mask, dice_pred = self.batch_forward(sam_model, feature_list, image_embedding, image, prev_masks, points=[points_input, labels_input], boxes=box_input) + + # ======================================================== + if self.args.multiple_outputs: + dice_pred_best, max_label_index = torch.max(dice_pred, dim=1) + mask_list = [mask[i, max_label_index[i], :].unsqueeze(0) for i in range(mask.size(0))] + mask_best = torch.stack(mask_list, dim=0) + else: + mask_best = mask + + # ======================================================== + + if self.args.refine and self.args.refine_test: + mask_refine, error_map = self.sam.mask_decoder.refine(image, mask_best, [self.click_points, self.click_labels], mask_best.detach()) + self.logger.info('dice before refine {} and after {}, label 0: {}, label 1: {}'.format( + self.get_dice_score(torch.sigmoid(mask_best), label), self.get_dice_score(torch.sigmoid(mask_refine), label), + str(labels_input.numel() - torch.count_nonzero(labels_input)), str(torch.count_nonzero(labels_input)) ) ) + mask_best = mask_refine # FIXME refine or not + + loss = self.get_dice_score(torch.sigmoid(mask_best), label) # dice + + return_loss += loss + prev_masks = mask_best + + if return_each_iter: + return_mask_total_iter[iter_num, :] = mask_best + if return_each_iter: + print(return_mask_total_iter.shape) + return return_loss / iter_nums, return_mask_total_iter + else: + return return_loss / iter_nums, prev_masks + + def get_dice_score(self, prev_masks, label): + def compute_dice(mask_pred, mask_gt): + mask_threshold = 0.5 + + mask_pred = (mask_pred > mask_threshold) + mask_gt = (mask_gt > 0) + + volume_sum = mask_gt.sum() + mask_pred.sum() + if volume_sum == 0: + return np.NaN + volume_intersect = (mask_gt & mask_pred).sum() + return 2 * volume_intersect / volume_sum + + pred_masks = (prev_masks > 0.5) + true_masks = (label > 0) + dice_list = [] + for i in range(true_masks.shape[0]): + dice_list.append(compute_dice(pred_masks[i], true_masks[i])) + return (sum(dice_list) / len(dice_list)).item() + + + + +def main(): + init_seeds() + args = parser.parse_args() + check_and_setup_parser(args) + + log_name = 'test_' + args.save_name + setup_logger(logger_name=log_name, root=args.save_dir, screen=True, tofile=True) + logger = logging.getLogger(log_name) + logger.info(str(args)) + + #ckpt = '/home/hao/Hao/3D_medical_foundation_model/src/implementation/log/colon/3DSAM/best.pth.tar' + ckpt = os.path.join(args.save_dir, args.checkpoint + '.pth.tar') + with torch.no_grad(): + tester = Tester(args, logger, ckpt) + loss = tester.validate(epoch_num=0) + + print(loss) + + logger.info("- Test done") + +if __name__ == "__main__": + main() \ No newline at end of file diff --git a/src/train.py b/src/train.py new file mode 100644 index 0000000000000000000000000000000000000000..e675ff523118059db5d3917405fd9f622c2c6758 --- /dev/null +++ b/src/train.py @@ -0,0 +1,104 @@ +import logging +import os +import sys + +ROOT_DIR = os.path.dirname(os.path.dirname(__file__)) +if ROOT_DIR not in sys.path: + sys.path.insert(0, ROOT_DIR) + +from src.utils.util import setup_logger +from src.config.config_args import * +from src.processor.trainer import Trainer +import torch.multiprocessing as mp +import torch +import torch.distributed as dist +import numpy as np +import random +from torch.backends import cudnn + + +def init_seeds(seed=0, cuda_deterministic=True): + random.seed(seed) + np.random.seed(seed) + torch.manual_seed(seed) + torch.cuda.manual_seed(seed) + torch.cuda.manual_seed_all(seed) + # Speed-reproducibility tradeoff https://pytorch.org/docs/stable/notes/randomness.html + if cuda_deterministic: # slower, more reproducible + cudnn.deterministic = True + cudnn.benchmark = False + else: # faster, less reproducible + cudnn.deterministic = False + cudnn.benchmark = True + + +def device_config(args): + try: + args.nodes = 1 + args.ngpus_per_node = len(args.gpu_ids) + args.world_size = args.nodes * args.ngpus_per_node + + except RuntimeError as e: + print(e) + + +def setup(rank, world_size): + # initialize the process group + dist.init_process_group( + backend='nccl', + #init_method=f'tcp://127.0.0.1:{args.port}', + init_method=f'tcp://127.0.0.1:12361', + world_size=world_size, + rank=rank + ) + + +def main_worker(rank, args): + setup(rank, args.world_size) + + torch.cuda.set_device(rank) + args.num_workers = int(args.num_workers / args.ngpus_per_node) + args.device = torch.device(f"cuda:{rank}") + args.rank = rank + + init_seeds(1 + rank) + + log_name = 'train_' + args.save_name + setup_logger(logger_name=log_name, root=args.save_dir, + level=logging.INFO if rank in [-1, 0] else logging.WARN, screen=True, tofile=True) + logger = logging.getLogger(log_name) + logger.info(str(args)) + + Trainer(args, logger).run() + cleanup() + + +def main(): + args = parser.parse_args() + check_and_setup_parser(args) + + if args.ddp: + mp.set_sharing_strategy('file_system') + device_config(args) + mp.spawn( + main_worker, + nprocs=args.world_size, + args=(args, ) + ) + + else: + log_name = 'train_' + args.save_name + setup_logger(logger_name=log_name, root=args.save_dir, screen=True, tofile=True) + logger = logging.getLogger(log_name) + logger.info(str(args)) + + args.rank = -1 + Trainer(args, logger).run(), + + +def cleanup(): + dist.destroy_process_group() + + +if __name__ == "__main__": + main() diff --git a/src/utils/__pycache__/boundary_selection.cpython-312.pyc b/src/utils/__pycache__/boundary_selection.cpython-312.pyc new file mode 100644 index 0000000000000000000000000000000000000000..8e3b6306989f37536b43b29e696de25af7ae5466 Binary files /dev/null and b/src/utils/__pycache__/boundary_selection.cpython-312.pyc differ diff --git a/src/utils/__pycache__/boundary_selection.cpython-39.pyc b/src/utils/__pycache__/boundary_selection.cpython-39.pyc new file mode 100644 index 0000000000000000000000000000000000000000..c63840dd40b912a6498c2896b6650de91fbcc8ed Binary files /dev/null and b/src/utils/__pycache__/boundary_selection.cpython-39.pyc differ diff --git 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index 0000000000000000000000000000000000000000..6dde00c5fa3699775e06b56cd9d89c821c6637fc Binary files /dev/null and b/src/utils/__pycache__/util.cpython-39.pyc differ diff --git a/src/utils/boundary_selection.py b/src/utils/boundary_selection.py new file mode 100644 index 0000000000000000000000000000000000000000..503aaeb2dd0e7f38397d63b923b4801556938e51 --- /dev/null +++ b/src/utils/boundary_selection.py @@ -0,0 +1,75 @@ +import torch +import torch.nn as nn +import numpy as np +import nibabel as nib +import os +def get_boundary(seg, kernel_size): + pad_size = int((kernel_size - 1) / 2) + m_xy = nn.AvgPool3d((kernel_size, kernel_size, 1), stride=1, padding=(pad_size, pad_size, 0)).cuda() + output_xy = m_xy(seg) + edge_xy = abs(seg - output_xy) + # edge = edge_xy[0, :] + edge_locations = torch.multiply(edge_xy, seg) + edge_locations[edge_locations > 0] = 1 + edge_mask = edge_locations.squeeze(0) + + return edge_mask + + +def find_boundary_map(seg, boundary_kernel=3, margin_kernel=7): + boundary = get_boundary(seg, kernel_size=boundary_kernel).unsqueeze(0) + margin = get_boundary(seg, kernel_size=margin_kernel).unsqueeze(0) - boundary + content = seg - margin - boundary + return boundary.squeeze(0), margin.squeeze(0), content.squeeze(0) + + +def get_points(seg, sample): + x = torch.where(seg == 1)[2][sample] + y = torch.where(seg == 1)[3][sample] + z = torch.where(seg == 1)[4][sample] # --> tensor([[x_value]]) instead of tensor([x_value]) + return x, y, z + + +def get_points_location(seg, num=1, use_seed=True, seed=0): + """ + use this to get anchor points + """ + l = len(torch.where(seg == 1)[0]) + if use_seed: + np.random.seed(seed) + else: + np.random.seed(None) + sample = np.random.choice(np.arange(l), num, replace=True) + x, y, z = get_points(seg, sample) + + + points_dict = {'x_location': x, 'y_location': y, 'z_location': z} + return points_dict + +if __name__ == '__main__': + seg_data = nib.load('./example_label_cropped.nii.gz') + seg = seg_data.get_fdata() + seg = torch.from_numpy(seg).float().cuda().unsqueeze(0).unsqueeze(0) + + boundary, margin, content = find_boundary_map(seg) + + points_dict = get_points_location(seg) + + boundary = boundary.squeeze(0).squeeze(0).cpu().detach().numpy() + margin = margin.squeeze(0).squeeze(0).cpu().detach().numpy() + content = content.squeeze(0).squeeze(0).cpu().detach().numpy() + + nib.save(nib.Nifti1Image(boundary, seg_data.affine, seg_data.header), os.path.join(os.getcwd(), 'boundary.nii.gz')) + nib.save(nib.Nifti1Image(margin, seg_data.affine, seg_data.header), os.path.join(os.getcwd(), 'margin.nii.gz')) + nib.save(nib.Nifti1Image(content, seg_data.affine, seg_data.header), os.path.join(os.getcwd(), 'content.nii.gz')) + print('points location: {}'.format(points_dict)) + + # seg_data = nib.load('./example_label.nii.gz') + # seg = seg_data.get_fdata() + # seg_crop = seg[280:280+200, 200:200+200, :] + # nib.save(nib.Nifti1Image(seg_crop, seg_data.affine, seg_data.header), os.path.join(os.getcwd(), 'example_label_cropped.nii.gz')) + # + # seg_data = nib.load('./example_image.nii.gz') + # seg = seg_data.get_fdata() + # seg_crop = seg[280:280+200, 200:200+200, :] + # nib.save(nib.Nifti1Image(seg_crop, seg_data.affine, seg_data.header), os.path.join(os.getcwd(), 'example_image_cropped.nii.gz')) \ No newline at end of file diff --git a/src/utils/plot.py b/src/utils/plot.py new file mode 100644 index 0000000000000000000000000000000000000000..97bdcd98099ef6c4325f44b6b902a37f394478d5 --- /dev/null +++ b/src/utils/plot.py @@ -0,0 +1,29 @@ +import numpy as np +import matplotlib.pyplot as plt + +def show_scribbles(mask, ax, alpha=0.5): + """ + Overlay positive scribbles (green) and negative (red) scribbles + Args: + mask: 1 x (C) x H x W or 2 x (C) x H x W + ax: matplotlib axis + alpha: transparency of the overlay + """ + mask = mask.squeeze() # 2 x H x W + if len(mask.shape)==2: + # If there's only channel of scribbles, overlay the scribbles in blue + h, w = mask.shape + color = np.array([30/255, 144/255, 255/255, alpha]) + mask_image = mask.reshape(h, w, 1) * color.reshape(1, 1, -1) + ax.imshow(mask_image) + elif len(mask.shape)==3: + # If there are 2 channels, take the first channel as positive scribbles (green) and the second channel as negaitve scribbles (red) + c, h, w = mask.shape + color = np.array([0, 1, 0, alpha]) + mask_image = mask[0,...].reshape(h, w, 1) * color.reshape(1, 1, -1) + ax.imshow(mask_image) + color = np.array([1, 0, 0, alpha]) + mask_image = mask[1,...].reshape(h, w, 1) * color.reshape(1, 1, -1) + ax.imshow(mask_image) + else: + raise ValueError("mask must be 2 or 3 dimensional") \ No newline at end of file diff --git a/src/utils/scribble.py b/src/utils/scribble.py new file mode 100644 index 0000000000000000000000000000000000000000..bdb130f9231e42b84148a43f05b3aeef220e5ce8 --- /dev/null +++ b/src/utils/scribble.py @@ -0,0 +1,626 @@ +from typing import Union, Tuple, List, Optional + +import numpy as np +import torch + +import kornia +import cv2 +import src.voxynth.noise as v_noise +import src.voxynth.transform as v_transform + +import os + +# Prevent neurite from trying to load tensorflow +os.environ['NEURITE_BACKEND'] = 'pytorch' + +def _thin_mask(mask_np: np.ndarray) -> np.ndarray: + if hasattr(cv2, "ximgproc") and hasattr(cv2.ximgproc, "thinning"): + return cv2.ximgproc.thinning(mask_np) + try: + from skimage.morphology import skeletonize + except Exception as exc: + raise AttributeError( + "cv2.ximgproc.thinning is unavailable and scikit-image is missing; " + "install opencv-contrib-python or scikit-image." + ) from exc + return (skeletonize(mask_np.astype(bool)).astype(np.uint8) * 255) + + +# ----------------------------------------------------------------------------- +# Parent class +# ----------------------------------------------------------------------------- + +class WarpScribble: + """ + Parent scribble class with shared functions for generating noise masks (useful for breaking up scribbles) and applying deformation fields (to warp scribbles) + """ + + def __init__(self, + warp: bool = True, + warp_smoothing: Union[int, Tuple[int], List[int]] = (4, 16), + warp_magnitude: Union[int, Tuple[int], List[int]] = (1, 6), + mask_smoothing: Union[int, Tuple[int], List[int]] = (4, 16), + ): + if isinstance(warp_smoothing, int): + warp_smoothing = [warp_smoothing, warp_smoothing] + if isinstance(warp_magnitude, int): + warp_magnitude = [warp_magnitude, warp_magnitude] + # Warp settings + self.warp = warp + self.warp_smoothing = list(warp_smoothing) + self.warp_magnitude = list(warp_magnitude) + # Noise mask settings + self.mask_smoothing = mask_smoothing + + def noise_mask(self, shape: Union[Tuple[int], List[int]] = (8, 128, 128), device=None): + """ + Get a random binary mask by thresholding smoothed noise. The mask is used to break up the scribbles + """ + if isinstance(self.mask_smoothing, tuple): + get_smoothing = lambda: np.random.uniform(*self.mask_smoothing) + else: + get_smoothing = lambda: self.mask_smoothing + + noise = torch.stack([ + v_noise.perlin(shape=shape[-2:], smoothing=get_smoothing(), magnitude=1, device=device) for _ in + range(shape[0]) + ]) # shape: b x H x W + noise_mask = (noise > 0.0).int().unsqueeze(1) + + return noise_mask # shaoe: b x 1 x H x W + + def apply_warp(self, x: torch.Tensor): + """ + Warp a given mask x using a random deformation field + """ + if x.sum() > 0: + # warp scribbles using a deformation field + deformation_field = v_transform.random_transform( + shape=x.shape[-2:], + affine_probability=0.0, + warp_probability=1.0, + warp_integrations=0, + warp_smoothing_range=self.warp_smoothing, + warp_magnitude_range=self.warp_magnitude, + voxsize=1, + device=x.device, + isdisp=False + ) + + warped = v_transform.spatial_transform(x, trf=deformation_field, isdisp=False) + if warped.sum() == 0: + return x + else: + return (warped - warped.min()) / (warped.max() - warped.min()) + else: + # Don't need to warp if mask is empty + return x + + def batch_scribble(self, mask: torch.Tensor, n_scribbles: int = 1): + """ + Simulate scribbles for a batch of examples (mask). + """ + raise NotImplementedError + + def __call__(self, mask: torch.Tensor, n_scribbles: int = 1) -> torch.Tensor: + """ + Args: + mask: (b,1,H,W) or (1,H,W) mask in [0,1] to sample scribbles from + Returns: + scribble_mask: (b,1,H,W) or (1,H,W) mask(s) of scribbles on [0,1] + """ + assert len(mask.shape) in [3, 4], f"mask must be b x 1 x h x w or 1 x h x w. currently {mask.shape}" + + if len(mask.shape) == 3: + # shape: 1 x h x w + return self.batch_scribble(mask[None, ...], n_scribbles=n_scribbles)[0, ...] + else: + # shape: b x 1 x h x w + return self.batch_scribble(mask, n_scribbles=n_scribbles) + + +# ----------------------------------------------------------------------------- +# Line Scribbles +# ----------------------------------------------------------------------------- + +class LineScribble(WarpScribble): + """ + Generates scribbles by + 1) drawing lines connecting random points on the mask + 2) warping with a random deformation field + 3) then correcting any scribbles outside the mask + 5) optionally, limiting the max area of scribbles to k pixels + """ + + def __init__(self, + # Warp settings + warp: bool = True, + warp_smoothing: Union[int, Tuple[int], List[int]] = (4, 16), + warp_magnitude: Union[int, Tuple[int], List[int]] = (1, 6), + mask_smoothing: Union[int, Tuple[int], List[int]] = (4, 16), + # Line scribble settings + thickness: int = 1, + preserve_scribble: bool = True, # if True, prevents empty scribble masks from being returned + max_pixels: Optional[int] = None, # per "scribble" + max_pixels_smooth: Optional[int] = 42, + # Viz + show: bool = False + ): + + super().__init__( + warp=warp, + warp_smoothing=warp_smoothing, + warp_magnitude=warp_magnitude, + mask_smoothing=mask_smoothing, + ) + self.thickness = thickness + self.preserve_scribble = preserve_scribble + self.max_pixels = max_pixels + self.max_pixels_smooth = max_pixels_smooth + self.show = show + + def batch_scribble(self, mask: torch.Tensor, n_scribbles: int = 1) -> torch.Tensor: + """ + Args: + mask: (b,1,H,W) mask in [0,1] to sample scribbles from + n_scribbles: number of line scribbles to sample initially + Returns: + scribble_mask: (b,1,H,W) mask(s) of scribbles in [0,1] + """ + bs = mask.shape[0] + + # Points to sample line endpoints from + points = torch.nonzero(mask[:, 0, ...]) + + def sample_lines(indices): + + image = np.zeros(mask.shape[-2:] + (1,)) + + if len(indices) > 0: + # Sample points for each example in the batch + idx = np.random.randint(low=0, high=len(indices), size=2 * n_scribbles) + endpoints = points[indices, 1:][idx, 0, ...] + # Flip order of coordinates to be xy + endpoints = torch.flip(endpoints, dims=(1,)).cpu().numpy() + # Draw lines between the sample points + for i in range(n_scribbles): + + image = cv2.line(image, tuple(endpoints[i * 2]), tuple(endpoints[i * 2 + 1]), color=1, + thickness=1) + + return torch.from_numpy(image) # shape: H x W x 1 + + scribbles = torch.stack([ + sample_lines(torch.argwhere(points[:, 0] == i)) for i in range(bs) + ]).to(mask.device).moveaxis(-1, 1).float() # shape: b x 1 x H x W + + if self.warp: + warped_scribbles = torch.stack( + [self.apply_warp(scribbles[b, ...]) for b in range(bs)]) # shape: b x 1 x H x W + else: + warped_scribbles = scribbles + + # Remove lines outside the mask + corrected_warped_scribbles = mask * warped_scribbles + + if self.preserve_scribble: + # If none of the scribble falls in the mask after warping, undo warping + idx = torch.where(torch.sum(corrected_warped_scribbles, dim=(1, 2, 3)) == 0) + corrected_warped_scribbles[idx] = mask[idx] * scribbles[idx] + + if self.max_pixels is not None: + + noise = torch.stack([ + v_noise.perlin(shape=mask.shape[-2:], smoothing=self.max_pixels_smooth, magnitude=1, + device=mask.device) for _ in range(bs) + ]).unsqueeze(1) # shape: b x 1 x H x W + + # Shift all noise to be positive + if noise.min() < 0: + noise = noise - noise.min() + + # Get the top k pixels + flat_mask = (noise * corrected_warped_scribbles).view(bs, -1) + vals, idx = flat_mask.topk(k=(self.max_pixels * n_scribbles), dim=1) + + binary_mask = torch.zeros_like(flat_mask) + binary_mask.scatter_(dim=1, index=idx, src=torch.ones_like(flat_mask)) + + corrected_warped_scribbles = binary_mask.view(*mask.shape) * corrected_warped_scribbles + + if self.show: + + import neurite as ne + import matplotlib.pyplot as plt + from .plot import show_scribbles + + if self.max_pixels is not None: + binary_mask = binary_mask.reshape(*mask.shape) + tensors = [mask, scribbles, warped_scribbles, noise, binary_mask, corrected_warped_scribbles, mask] + titles = ["Mask", "Lines", "Warped Lines", 'Smooth Noise', 'Top k Pixels', 'Corrected Scribbles', + 'Corrected Scribbles'] + else: + tensors = [mask, scribbles, warped_scribbles, corrected_warped_scribbles, mask] + titles = ["Mask", "Lines", "Warped Lines", 'Corrected Scribbles', 'Corrected Scribbles'] + + fig, axes = ne.plot.slices( + sum([[x[i, 0, ...].cpu() for x in tensors] for i in range(bs)], []), + sum([titles for _ in range(bs)], []), + show=False, grid=(bs, len(titles)), width=3 * len(titles), do_colorbars=False + ) + + if bs > 1: + for i in range(bs): + show_scribbles(corrected_warped_scribbles[i, 0, ...].cpu(), axes[i, -1]) + else: + show_scribbles(corrected_warped_scribbles[0, 0, ...].cpu(), axes[-1]) + plt.show() + + return corrected_warped_scribbles # b x 1 x H x W + + +# ----------------------------------------------------------------------------- +# Median Axis Scribble +# ----------------------------------------------------------------------------- + +class CenterlineScribble(WarpScribble): + """ + Generates scribbles by + 1) skeletonizing the mask + 2) chopping up with a random noise mask + 3) warping with a random deformation field + 4) then correcting any scribbles that fall outside the mask + 5) optionally, limiting the max area of scribbles to k pixels + """ + + def __init__(self, + # Warp settings + warp: bool = True, + warp_smoothing: Union[int, Tuple[int], List[int]] = (4, 16), + warp_magnitude: Union[int, Tuple[int], List[int]] = (1, 6), + mask_smoothing: Union[int, Tuple[int], List[int]] = (4, 16), + # Thickness of skeleton + dilate_kernel_size: Optional[int] = None, + preserve_scribble: bool = True, # if True, prevents empty scribble masks from being returned + max_pixels: Optional[int] = None, # per "scribble" + max_pixels_smooth: int = 42, + # Viz + show: bool = False + ): + + super().__init__( + warp=warp, + warp_smoothing=warp_smoothing, + warp_magnitude=warp_magnitude, + mask_smoothing=mask_smoothing, + ) + self.dilate_kernel_size = dilate_kernel_size + self.preserve_scribble = preserve_scribble + self.max_pixels = max_pixels + self.max_pixels_smooth = max_pixels_smooth + self.show = show + + def batch_scribble(self, mask: torch.Tensor, n_scribbles: Optional[int] = 1): + """ + Simulate scribbles for a batch of examples. + Args: + mask: (b,1,H,W) mask in [0,1] to sample scribbles from. torch.int32 + n_scribbles: (int) only used when max_pixels is set as a multiplier for total area of the scribbles + currently, this argument does not control the number of components in the scribble mask + Returns: + scribble_mask: (b,1,H,W) mask(s) of scribbles in [0,1] + """ + assert len(mask.shape) == 4, f"mask must be b x 1 x h x w. currently {mask.shape}" + bs = mask.shape[0] + + mask_w_border = 255 * mask.clone().moveaxis(1, -1) + mask_w_border[:, :, 0, :] = 0 + mask_w_border[:, :, -1, :] = 0 + mask_w_border[:, 0, :, :] = 0 + mask_w_border[:, -1, :, :] = 0 + + # Skeletonize the mask + skeleton = torch.from_numpy( + np.stack([ + _thin_mask(mask_w_border[i, ...].cpu().numpy().astype(np.uint8)) / 255 for i in range(bs) + ]) + ).squeeze(-1).unsqueeze(1).to(mask.device).float() # shape: b x 1 x H x W + + if self.dilate_kernel_size is not None: + # Dilate the boundary to make it thicker + #k = _as_single_val(self.dilate_kernel_size) + k = 3 + if k > 0: + kernel = torch.ones((k, k), device=mask.device) + dilated_skeleton = kornia.morphology.dilation(skeleton, kernel=kernel, engine='convolution') + else: + dilated_skeleton = skeleton + + noise_mask = self.noise_mask(shape=mask.shape, device=mask.device) + + # Break up the boundary contours + scribbles = (dilated_skeleton * noise_mask) # shape: b x 1 x H x W + + if self.preserve_scribble: + # If none of the scribbles fall in the random mask, keep the whole scribble + idx = torch.where(torch.sum(scribbles, dim=(1, 2, 3)) == 0) + scribbles[idx] = skeleton[idx] + + if self.warp: + warped_scribbles = torch.stack([self.apply_warp(scribbles[b, ...]) for b in range(bs)]) + else: + warped_scribbles = scribbles + + corrected_warped_scribbles = mask * warped_scribbles # shape: b x 1 x H x W + + if self.preserve_scribble: + # If none of the scribble falls in the mask after warping, remove the warping + idx = torch.where(torch.sum(corrected_warped_scribbles, dim=(1, 2, 3)) == 0) + corrected_warped_scribbles[idx] = mask[idx] * scribbles[idx] + + if self.max_pixels is not None: + + noise = torch.stack([ + v_noise.perlin(shape=mask.shape[-2:], smoothing=self.max_pixels_smooth, magnitude=1, + device=mask.device) for _ in range(bs) + ]).unsqueeze(1) # shape: b x 1 x H x W + + # Shift all noise mask to be positive + if noise.min() < 0: + noise = noise - noise.min() + + flat_mask = (noise * corrected_warped_scribbles).view(bs, -1) + vals, idx = flat_mask.topk(k=(self.max_pixels * n_scribbles), dim=1) + + binary_mask = torch.zeros_like(flat_mask) + binary_mask.scatter_(dim=1, index=idx, src=torch.ones_like(flat_mask)) + + corrected_warped_scribbles = binary_mask.view(*mask.shape) * corrected_warped_scribbles + + if self.show: + + import neurite as ne + from .plot import show_scribbles + import matplotlib.pyplot as plt + + tensors = [mask, skeleton] + titles = ["Input Mask", "Skeleton"] + + if self.dilate_kernel_size is not None: + tensors.append(dilated_skeleton) + titles.append('Dilated Skeleton') + + if self.max_pixels is not None: + tensors += [noise_mask, scribbles, warped_scribbles, noise, binary_mask.reshape(*mask.shape), + corrected_warped_scribbles, mask] + titles += ["Noise Mask", 'Broken Skeleton', 'Warped Scribbles', 'Smooth Noise', 'Top k Pixels', + 'Corrected Scribbles', 'Corrected Scribbles'] + else: + tensors += [noise_mask, scribbles, warped_scribbles, corrected_warped_scribbles, mask] + titles += ["Noise Mask", 'Broken Skeleton', 'Warped Scribbles', 'Corrected Scribbles', + 'Corrected Scribbles'] + + fig, axes = ne.plot.slices( + sum([[x[i, ...].squeeze().cpu() for x in tensors] for i in range(bs)], []), + sum([titles for _ in range(bs)], []), + show=False, grid=(bs, len(titles)), width=3 * len(titles) + ) + + if bs > 1: + for i in range(bs): + show_scribbles(corrected_warped_scribbles[i, 0, ...].cpu(), axes[i, -1]) + else: + show_scribbles(corrected_warped_scribbles[0, 0, ...].cpu(), axes[-1]) + + plt.show() + + return corrected_warped_scribbles + + # ----------------------------------------------------------------------------- + + +# Contour Scribbles +# ----------------------------------------------------------------------------- + +class ContourScribble(WarpScribble): + """ + Generates scribbles by + 1) blurring and thresholding the mask, then getting the contours + 2) chopping up the contour scribbles with a random noise mask + 3) warping with a random deformation field + 4) then correcting any scribbles that fall outside the mask + 5) optionally, limiting the max area of scribbles to k pixels + """ + + def __init__(self, + # Warp settings + warp: bool = True, + warp_smoothing: Union[int, Tuple[int], List[int]] = (4, 16), + warp_magnitude: Union[int, Tuple[int], List[int]] = (1, 6), + mask_smoothing: Union[int, Tuple[int], List[int]] = (4, 16), + # Blur settings + blur_kernel_size: int = 33, + blur_sigma: Union[float, Tuple[float], List[float]] = (5.0, 20.0), + # Other settings + dilate_kernel_size: Optional[Union[int, Tuple[int]]] = None, + preserve_scribble: bool = True, # if True, prevents empty scribble masks from being returned + max_pixels: Optional[int] = None, # per "scribble" + max_pixels_smooth: Optional[int] = 42, + # Viz + show: bool = False + ): + + super().__init__( + warp=warp, + warp_smoothing=warp_smoothing, + warp_magnitude=warp_magnitude, + mask_smoothing=mask_smoothing, + ) + + # Blur settings + if isinstance(blur_sigma, float) or isinstance(blur_sigma, int): + blur_sigma = (blur_sigma, blur_sigma + 1e-7) + + self.blur_fn = kornia.augmentation.RandomGaussianBlur( + kernel_size=(blur_kernel_size, blur_kernel_size), sigma=blur_sigma, p=1. + ) + # Line thickness + self.dilate_kernel_size = dilate_kernel_size + # Corrections + self.preserve_scribble = preserve_scribble + self.max_pixels = max_pixels + self.max_pixels_smooth = max_pixels_smooth + # Viz + self.show = show + + def batch_scribble(self, mask: torch.Tensor, n_scribbles: Optional[int] = 1): + """ + Args: + mask: (b,1,H,W) mask in [0,1] to sample scribbles from + n_scribbles: (int) only used when max_pixels is set as a multiplier for total area of the scribbles + currently, this argument does not control the number of components in the scribble mask + Returns: + scribble_mask: (b,1,H,W) mask(s) of scribbles in [0,1] + """ + assert len(mask.shape) == 4, f"mask must be b x 1 x h x w. currently {mask.shape}" + bs = mask.shape[0] + + rev_mask = (1 - mask) + blur_mask = self.blur_fn(rev_mask) + corrected_blur_mask = torch.reshape(torch.maximum(blur_mask, rev_mask), (bs, -1)) + + # Randomly sample a threshold for each example + min_bs = corrected_blur_mask.min(1)[0].cpu().numpy() + binary_mask = (torch.reshape(mask, (bs, -1)) > 0) * corrected_blur_mask + max_bs = torch.reshape(binary_mask, (bs, -1)).max(1)[0].cpu().numpy() + thresh = torch.from_numpy(np.random.uniform(min_bs, max_bs, size=bs)).to(mask.device) + + # Apply threshold + thresh = thresh[..., None].repeat(1, mask.shape[-2] * mask.shape[-1]) + binary_blur_mask = (corrected_blur_mask <= thresh).view(mask.shape).float() + + # Use filter to get contours + _, boundary = kornia.filters.canny(binary_blur_mask, hysteresis=False) + + if self.dilate_kernel_size is not None: + # Dilate the boundary to make it thicker + #k = _as_single_val(self.dilate_kernel_size) + k = 0 + if k > 0: + kernel = torch.ones((k, k), device=boundary.device) + dilated_boundary = kornia.morphology.dilation(boundary, kernel=kernel, engine='convolution') + else: + dilated_boundary = boundary + else: + dilated_boundary = boundary + + # Get noise mask to break up the contours + noise_mask = self.noise_mask(shape=mask.shape, device=mask.device) + + # Break up the boundary contours + scribbles = dilated_boundary * noise_mask # shape: b x 1 x H x W + + if self.preserve_scribble: + # If none of the scribbles fall in the noise mask, keep the whole scribble + idx = torch.where(torch.sum(scribbles, dim=(1, 2, 3)) == 0)[0] + scribbles[idx, ...] = dilated_boundary[idx, ...] + + if self.warp: + warped_scribbles = torch.stack([self.apply_warp(scribbles[b, ...]) for b in range(bs)]) + else: + warped_scribbles = scribbles + + # Remove scribbles that are outside the mask + corrected_warped_scribbles = mask * warped_scribbles + + if self.preserve_scribble: + # If none of the scribble falls in the mask after warping, remove the warping + idx = torch.where(torch.sum(corrected_warped_scribbles, dim=(1, 2, 3)) == 0)[0] + corrected_warped_scribbles[idx, ...] = mask[idx, ...] * scribbles[idx, ...] + + if self.max_pixels is not None: + + noise = torch.stack([ + v_noise.perlin(shape=mask.shape[-2:], smoothing=self.max_pixels_smooth, magnitude=1, + device=mask.device) for _ in range(bs) + ]).unsqueeze(1) # shape: b x 1 x H x W + + # Shift noise mask to be positive + if noise.min() < 0: + noise = noise - noise.min() + + flat_mask = (noise * corrected_warped_scribbles).view(bs, -1) + vals, idx = flat_mask.topk(k=(self.max_pixels * n_scribbles), dim=1) + + binary_mask = torch.zeros_like(flat_mask) + binary_mask.scatter_(dim=1, index=idx, src=torch.ones_like(flat_mask)) + + corrected_warped_scribbles = binary_mask.view(*mask.shape) * corrected_warped_scribbles + + return corrected_warped_scribbles + + +if __name__ == '__main__': + import torch + import torch.distributed as dist + import numpy as np + import random + from torch.backends import cudnn + + + def init_seeds(seed=0, cuda_deterministic=True): + random.seed(seed) + np.random.seed(seed) + torch.manual_seed(seed) + torch.cuda.manual_seed(seed) + torch.cuda.manual_seed_all(seed) + # Speed-reproducibility tradeoff https://pytorch.org/docs/stable/notes/randomness.html + if cuda_deterministic: # slower, more reproducible + cudnn.deterministic = True + cudnn.benchmark = False + else: # faster, less reproducible + cudnn.deterministic = False + cudnn.benchmark = True + + import SimpleITK as sitk + import torchio as tio + + init_seeds() + mask_path = '/home/hao/Hao/data/0SAM_data/Task10_colon/labelsTr/colon_001.nii.gz' + sitk_label = sitk.ReadImage(mask_path) + subject = tio.Subject( + image=tio.ScalarImage.from_sitk(sitk_label), + label=tio.LabelMap.from_sitk(sitk_label), + ) + transforms_list = [ + tio.Resample(1), ] + transforms_list.append(tio.CropOrPad(mask_name='label', target_shape=(128,64,96))) + transforms = tio.Compose(transforms_list) + subject = transforms(subject) + mask = subject.label.data.clone().detach() + + # mask[:, :, :, 39] = 0 + # mask[:, 68:72, 26:30, 39] = 1 + # mask[mask > 0] = 0 + # print(torch.unique(mask)) + + sitk_label_new = mask.squeeze(0) + result_image = sitk.GetImageFromArray(sitk_label_new) + sitk.WriteImage(result_image, './maskresult.nii.gz') + + + mask = mask.permute(3, 0, 1, 2) + #mask = (torch.ones_like(mask) - mask).permute(3, 0, 1, 2) + import time + a = time.time() + #CenterlineScribble + #LineScribble + ContourScribble_mask = LineScribble().batch_scribble(mask) + print(time.time() - a ) + + + sitk_label_new = ContourScribble_mask.permute(1, 2, 3, 0).squeeze(0) + sitk_label_new[sitk_label_new > 0] = 1 + result_image = sitk.GetImageFromArray(sitk_label_new) + sitk.WriteImage(result_image, './result.nii.gz') + print(1) diff --git a/src/utils/util.py b/src/utils/util.py new file mode 100644 index 0000000000000000000000000000000000000000..b20d42feaf39fd23c0ca1e820d0828c20cbba4b6 --- /dev/null +++ b/src/utils/util.py @@ -0,0 +1,118 @@ +import logging +import os +import time +import torch +import shutil +import numpy as np +import nibabel as nib +import pandas +from typing import List, Tuple, Type, Union + +def save_checkpoint(state, is_best, checkpoint): + filepath_last = os.path.join(checkpoint, "last.pth.tar") + filepath_best = os.path.join(checkpoint, "best.pth.tar") + if not os.path.exists(checkpoint): + print("Checkpoint Directory does not exist! Masking directory {}".format(checkpoint)) + os.mkdir(checkpoint) + else: + print("Checkpoint Directory exists!") + torch.save(state, filepath_last) + if is_best: + if os.path.isfile(filepath_best): + os.remove(filepath_best) + shutil.copyfile(filepath_last, filepath_best) + + +def setup_logger(logger_name, root, level=logging.INFO, screen=False, tofile=False): + """set up logger""" + lg = logging.getLogger(logger_name) + formatter = logging.Formatter("[%(asctime)s.%(msecs)03d] %(message)s", datefmt="%H:%M:%S") + lg.setLevel(level) + + log_time = get_timestamp() + if tofile: + log_file = os.path.join(root, "{}_{}.log".format(logger_name, log_time)) + fh = logging.FileHandler(log_file, mode="w") + fh.setFormatter(formatter) + lg.addHandler(fh) + if screen: + sh = logging.StreamHandler() + sh.setFormatter(formatter) + lg.addHandler(sh) + return lg, log_time + + +def get_timestamp(): + timestampTime = time.strftime("%H%M%S") + timestampDate = time.strftime("%Y%m%d") + return timestampDate + "-" + timestampTime + + + +def save_csv(args, logger, patient_list, + loss, loss_nsd, + ): + save_predict_dir = os.path.join(args.save_base_dir, 'csv_file') + if not os.path.exists(save_predict_dir): + os.makedirs(save_predict_dir) + + df_dict = {'patient': patient_list, + 'dice': loss, + 'nsd': loss_nsd, + } + + df = pandas.DataFrame(df_dict) + df.to_csv(os.path.join(save_predict_dir, 'prompt_' + str(args.num_prompts) + + '_' + str(args.save_name) + '.csv'), index=False) + logger.info("- CSV saved") + + +def save_image(save_array, test_data, image_data, save_prediction_path): + nib.save(nib.Nifti1Image(save_array[0, 0, :].permute(test_data.dataset.spatial_index).cpu().numpy(), + image_data.affine, image_data.header), save_prediction_path) + + +def _bbox_mask(mask_volume: torch.Tensor, diff=1, mode='train', dynamic=False, max_diff=10, return_extend=False) -> torch.Tensor: + bbox_coords = [] + for volume in mask_volume: + i_any = volume.any(dim=2).any(dim=1) + j_any = volume.any(dim=2).any(dim=0) + k_any = volume.any(dim=1).any(dim=0) + + i_min, i_max = torch.where(i_any)[0][[0, -1]] + j_min, j_max = torch.where(j_any)[0][[0, -1]] + k_min, k_max = torch.where(k_any)[0][[0, -1]] + + # i_max, j_max, k_max = i_max + diff, j_max + diff, k_max + diff + # bb = torch.tensor([[i_min, j_min, k_min, i_max, j_max, k_max]]) + + if dynamic and mode == 'train': + # diff_ = np.random.choice(range(-max_diff, max_diff), size=6, replace=True) + diff_ = np.random.choice(range(0, max_diff), size=6, replace=True) + + if max(0, i_min - diff_[0]) < min(i_max + diff_[1], 126): + i_min, i_max = max(0, i_min - diff_[0]), min(i_max + diff_[1], 126) + if max(0, j_min - diff_[2]) < min(j_max + diff_[3], 126): + j_min, j_max = max(0, j_min - diff_[2]), min(j_max + diff_[3], 126) + if max(0, k_min - diff_[4]) < min(k_max + diff_[5], 126): + k_min, k_max = max(0, k_min - diff_[4]), min(k_max + diff_[5], 126) + + # delta_i = i_max - i_min + diff + # delta_j = j_max - j_min + diff + # delta_k = k_max - k_min + diff + + # diff_value = -5 + # i_min, i_max = max(0, i_min - diff_value), min(i_max + diff_value, 126) + # j_min, j_max = max(0, j_min - diff_value), min(j_max + diff_value, 126) + # k_min, k_max = max(0, k_min - diff_value), min(k_max + diff_value, 126) + + + bb = torch.tensor([[i_min, j_min, k_min, i_max + 1, j_max + 1, k_max + 1]]) + # print(i_min, i_max + 1, j_min, j_max + 1, k_min, k_max + 1) # check dynamic box + + # bb = torch.tensor([[i_min, j_min, k_min, delta_i, delta_j, delta_k]]) + bbox_coords.append(bb) + # print(torch.sum(volume), torch.sum(volume[i_min:i_max + 1, j_min:j_max + 1, k_min:k_max + 1])) + bbox_coords = torch.stack(bbox_coords) + return bbox_coords + diff --git a/src/voxynth/__init__.py b/src/voxynth/__init__.py new file mode 100644 index 0000000000000000000000000000000000000000..55ebfb1a79deebb14206e9bb3f8b67b22c099e16 --- /dev/null +++ b/src/voxynth/__init__.py @@ -0,0 +1,17 @@ +''' +Voxynth: Deep-learning utilites for 2D and 3D image synthesis and augmentation +''' + +__version__ = '0.0.0' + +from . import utility +from .utility import chance + +from . import noise +from . import filter +from . import transform + +from . import augment +from .augment import image_augment + +from . import synth diff --git a/src/voxynth/__pycache__/__init__.cpython-312.pyc b/src/voxynth/__pycache__/__init__.cpython-312.pyc new file mode 100644 index 0000000000000000000000000000000000000000..d681a0b3d17135dc47fb2ccd5fb3c92bf74b2936 Binary files /dev/null and b/src/voxynth/__pycache__/__init__.cpython-312.pyc differ diff --git a/src/voxynth/__pycache__/__init__.cpython-39.pyc b/src/voxynth/__pycache__/__init__.cpython-39.pyc new file mode 100644 index 0000000000000000000000000000000000000000..f16d7cec06b6230e3a6632c9a933954659a81433 Binary files /dev/null and b/src/voxynth/__pycache__/__init__.cpython-39.pyc differ diff --git a/src/voxynth/__pycache__/augment.cpython-312.pyc b/src/voxynth/__pycache__/augment.cpython-312.pyc new 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import grid_coordinates +from .filter import gaussian_blur +from .noise import perlin + + +def image_augment( + image: Tensor, + mask: Tensor = None, + voxsize: List[float] = 1.0, + normalize: bool = True, + normalize_min_quantile: float = None, + normalize_max_scale: float = None, + inversion_probability: float = 0.0, + smoothing_probability: float = 0.0, + smoothing_one_axis_probability: float = 0.5, + smoothing_max_sigma: float = 2.0, + bias_field_probability: float = 0.0, + bias_field_max_magnitude: float = 0.5, + bias_field_smoothing_range: Tuple[float, float] = [10, 30], + background_noise_probability: float = 0.0, + background_blob_probability: float = 0.0, + background_roll_probability: float = 0.0, + background_roll_max_strength: float = 0.5, + added_noise_probability: float = 0.0, + added_noise_max_sigma: float = 0.05, + wave_artifact_probability: float = 0.0, + wave_artifact_max_strength: float = 0.05, + line_corruption_probability: float = 0.0, + gamma_scaling_probability: float = 0.0, + gamma_scaling_max: float = 0.8, + resized_probability: float = 0.0, + resized_one_axis_probability: float = 0.5, + resized_max_voxsize: float = 2): + """ + Augment an image with a variety of random effects. + + Supports intensity smoothing, bias field simulation, background noise synthesis, + a variety of corruptions, and resolution scaling. This function is designed to be + used with a channeled image tensor, where the first dimension is the channel dimension. + Augmentation is applies independently to across seperate channels. + + A boolean mask can be optionally provided. Any image signal outside of the mask is + considered background and replaced by synthetic noise and/or other effects. + + Note that this function expects the image singals to be between 0 and 1, so it will + min/max normalize the input by default. This can be disabled with the `normalize` + parameter. + + Parameters + ---------- + image: Tensor + An image tensor of shape `(channels, *shape)`. Can be 2D or 3D. + mask: Tensor, optionals + An mask tensor of shape `shape`. + voxsize: float or List[float], optional + The relative size of the voxel. This is used to appropriately scale + spatial-based parameters. + normalize: bool, optional + If True, the image is min/max normalized before augmentation. Not necessary if the + image intensities are already between 0 and 1. + normalize_min_quantile: float, optional + If provided, this quantile sets the minimum sample intensity for normalization scaling. + If None, the normalization scale will not be less than the maximum image intensity. + normalize_max_scale: float, optional + If provided, this scale sets the maximum sample intensity for normalization scaling. + It is a multiplicative factor, so 1.0 means the maximum intensity will not be scaled. + inversion_probability: float, optional + The probability of inverting the image intensities. + smoothing_probability: float, optional + The probability of applying a gaussian smoothing kernel. + smoothing_one_axis_probability: float, optional + The probability of applying the smoothing kernel to a single axis. This + is a sub-probability of the `smoothing_probability`. + smoothing_max_sigma: float, optional + The maximum sigma for the smoothing kernel. + bias_field_probability: float, optional + The probability of simulating a bias field. + bias_field_max_magnitude: float, optional + The maximum possible magnitude of of the bias field. + bias_field_smoothing_range: Tuple, optional + The range of perlin noise smoothing to generate the bias field. + background_noise_probability: float, optional + The probability of synthesizing perline noise in the background. Otherwise, + the background will be set to zero. + background_blob_probability: float, optional + The probability of adding random blobs of noise to the background. + background_roll_probability: float, optional + The probability of rolling the image around the background. + background_roll_max_strength: float, optional + The maximum scale for rolling the image around the background. + added_noise_probability: float, optional + The probability of adding random Gaussian noise across the entire image. + added_noise_max_sigma: float, optional + The maximum sigma for the added Gaussian noise. + wave_artifact_probability: float, optional + The probability of adding wave artifacts or grating effects to the image. + wave_artifact_max_strength: float, optional + The maximum strength (intensity) of added wave artifacts. + line_corruption_probability: float, optional + The probability of adding random line artifacts to the image, i.e. blocking out + signal in a random slice. + gamma_scaling_probability: float, optional + The probability of scaling the image intensities with a gamma function. + gamma_scaling_max: float, optional + The maximum value for the gamma exponentiation. + resized_probability: float, optional + The probability of downsampling, then re-upsampling the image to synthesize + low-resolution image resizing.e + resized_one_axis_probability: float, optional + The probability of resizing only one axis, to simulate thick-slice data. + resized_max_voxsize: float, optional + The maximum voxel size for the 'resized' downsampling step. + + Returns + ------- + Tensor + The augmented image tensor of shape (channels, *shape). + """ + + # parse some info about the input image + device = image.device + shape = image.shape[1:] + channels = image.shape[0] + ndim = len(shape) + + # voxsize is used to scale any parameters that spatially depend on the image resolution + voxsize = torch.as_tensor(voxsize, device=device) + if voxsize.ndim == 0: + voxsize = voxsize.repeat(ndim) + + # convert to float32 if necessary + image = image.clone() if torch.is_floating_point(image) else image.type(torch.float32) + + # mask, if provided, should be a boolean tensor of the same base shape (no channel dim) + if mask is None: + mask = image.sum(0) > 0 + elif mask.ndim != (image.ndim - 1): + raise ValueError(f'expected mask to have {ndim} dims, but got shape {mask.shape}') + + # cache for background data augmentation + background = mask == 0 + + # each channel should be processed as independent images + for channel in range(channels): + + # grab the current channel + cimg = image[channel] + + # ---- normalization ---- + + # min/max normalize since everything below operates with the + # assumption that intensities are between 0 and 1 + if normalize: + cimg -= cimg.min() + + # we have a few options for normalization, let's randomly choose one + methods = ['max'] + if normalize_min_quantile is not None: + methods.append('quantile') + if normalize_max_scale is not None: + methods.append('scale-up') + method = np.random.choice(methods) + + if method == 'max': + # standard min/max normalization + cimg /= cimg.max() + elif method == 'quantile': + # use a random quantile between min_quantile and 1.0 + q = np.random.uniform(normalize_min_quantile, 1.0) + cimg /= quantile(cimg, q) + cimg.clamp_(0, 1) + elif method == 'scale-up': + # use a random scale between 1.0 and max_scale + cimg /= np.random.uniform(1.0, normalize_max_scale) * cimg.max() + else: + raise ValueError(f'unknown normalization method: {method}') + + elif image.min() < 0 or image.max() > 1: + raise ValueError('image intensities must be between 0 and 1') + + # invert the image intensities + if chance(inversion_probability): + cimg = 1 - cimg + + # ---- intensity smoothing ---- + + # apply a random gaussian smoothing kernel + if chance(smoothing_probability): + max_sigma = (smoothing_max_sigma / voxsize.min()).cpu().numpy() # TODO: just use torch + if chance(smoothing_one_axis_probability): + # here we only smooth one axis to emulate thick slice data + sigma = np.zeros(ndim) + sigma[np.random.randint(ndim)] = np.random.uniform(0, max_sigma) + else: + # otherwise just smooth in all dimensions + sigma = np.random.uniform(0, max_sigma, size=ndim) + cimg = gaussian_blur(cimg.unsqueeze(0), sigma).squeeze(0) + + # ---- background synthesis ---- + + if chance(background_noise_probability): + # set the background as perline noise with a random mean + smoothing = torch.ceil(torch.tensor(np.random.uniform(1, 16)) / voxsize) + bg_image = perlin(shape, smoothing, device=device) + bg_image /= np.random.uniform(1, 10) + bg_image += np.random.rand() + else: + # otherwise just set it to zero + bg_image = torch.zeros(shape, device=device) + + # add random blobs of noise to the background + if chance(background_blob_probability): + smoothing = torch.ceil(torch.tensor(np.random.uniform(32, 64)) / voxsize) + noise = perlin(shape, smoothing, device=device) + blobs = noise > np.random.uniform(-0.2, 0.2) + bg_image[blobs] = np.random.rand() if chance(0.5) else noise[blobs] * np.random.rand() + + # here we copy-paste parts of the image around the background via axis rolling + if chance(background_roll_probability): + for i in range(np.random.randint(1, 4)): + dims = tuple(np.random.permutation(ndim)[:np.random.choice((1, 2))]) + shifts = [int(np.random.uniform(shape[d] / 4, shape[d] / 2)) for d in dims] + shifts = tuple(np.asarray(shifts) * np.random.choice([-1, 1], size=len(shifts))) + scale = np.random.randn() * background_roll_max_strength + bg_image += scale * torch.roll(cimg, shifts, dims=dims) + + # finally we copy the background into the image + cimg[background] = bg_image[background].clip(0, 1) + + # ---- corruptions ---- + + # synthesize a bias field of varying degrees of smoothing and intensity with perlin noise + if chance(bias_field_probability): + smoothing = np.random.uniform(*bias_field_smoothing_range) + magnitude = np.random.uniform(0, bias_field_max_magnitude) + cimg *= random_bias_field(shape, smoothing, magnitude, voxsize=voxsize, device=device) + + # some small corruptions that fill random slices with random intensities + if chance(line_corruption_probability): + for i in range(np.random.randint(1, 4)): + indices = [slice(0, s) for s in shape] + axis = np.random.randint(ndim) + indices[axis] = np.random.randint(shape[axis]) + cimg[indices] = np.random.rand() + + # add gaussian noise across the entire image + if chance(added_noise_probability): + std = np.random.uniform(0, added_noise_max_sigma) + cimg += torch.normal(mean=0, std=std, size=shape, device=device) + + # generate linear or circular wave (grating) artifacts across the image + if chance(wave_artifact_probability): + meshgrid = grid_coordinates(shape, device=device) + if chance(0.5): + wavelength = np.random.uniform(2, 8) + grating = random_linear_wave(meshgrid, wavelength) + cimg += grating * np.random.rand() * wave_artifact_max_strength + else: + wavelength = np.random.uniform(1, 2) + grating = random_spherical_wave(meshgrid, wavelength) + cimg += grating * np.random.rand() * wave_artifact_max_strength + + # ---- resizing ---- + + # here we account for low-resolution images that have been upsampled to the target resolution + if chance(resized_probability): + # there's no need to downsample if the target resolution is less + # than the max ds voxsize allowed + if torch.any(voxsize < resized_max_voxsize): + # half the time only downsample one random axis to mimic thick slice acquisitions + if chance(resized_one_axis_probability): + vsa = np.full(ndim, voxsize, dtype=np.float32) + vsa[np.random.randint(ndim)] = np.random.uniform(voxsize.min().cpu(), resized_max_voxsize) + scale = tuple(1 / vsa) + else: + scale = tuple(1 / np.random.uniform(voxsize, resized_max_voxsize)) + # downsample then resample, always use nearest here because if we don't enable align_corners, + # then the image will be moved around a lot + linear = 'trilinear' if ndim == 3 else 'bilinear' + ds = torch.nn.functional.interpolate(cimg.unsqueeze(0), scale_factor=scale, mode=linear, align_corners=True) + cimg = torch.nn.functional.interpolate(ds, shape, mode=linear, align_corners=True).squeeze(0) + + # ---- gamma exponentiation ---- + + # one final min/max normalization across channels + cimg -= cimg.min() + cimg /= cimg.max() + + # gamma exponentiation of the intensities to shift signal + # distribution in a random direction + if chance(gamma_scaling_probability): + gamma = np.random.uniform(-gamma_scaling_max, gamma_scaling_max) + cimg = cimg.pow(np.exp(gamma)) + + # lastly, copy the single channel into the image + image[channel] = cimg + + return image + + +def random_bias_field( + shape : List[int], + smoothing : float = 20, + magnitude : float = 0.1, + voxsize : float = 1, + device: torch.device = None) -> Tensor: + """ + Generate a random bias field with perlin noise. The bias field + is generated by exponentiating the noise. + + Parameters + ---------- + shape : List[int] + Shape of the bias field. + smoothing : float or List[float] + The spatial smoothing sigma in voxel coordinates. If a + single value is provided, it will be used for all dimensions. + magnitude : float or List[float] + The standard deviation of the noise across dimensions. If a single value is + provided, it will be used for all dimensions. + voxsize : float or List[float] + The relative size of the voxel. This is used to appropriately scale + the smoothing parameter. + device : torch.device, optional + The device to create the field on. + + Returns + ------- + Tensor + Bias field image. + """ + return perlin(shape, smoothing / voxsize, magnitude, device=device).exp() + + +def random_linear_wave(meshgrid : Tensor, wavelength : float) -> Tensor: + """ + Generate a random linear grating at an arbitrary angle. + + Parameters + ---------- + meshgrid : Tensor + Meshgrid of the image with expected shape `(W, H[,D], N)`, + where N is the image dimension. + wavelength : float + Wavelength of the wave in voxels. + + Returns + ------- + Tensor + Random linear wave image. + """ + # pick two random axes and generate an angled wave grating + ndim = meshgrid.ndim - 1 + angle = 0 if wavelength < 4 else np.random.uniform(0, np.pi) + if ndim == 3: + a, b = [meshgrid[..., d] for d in np.random.permutation(3)[:2]] + elif ndim == 2: + a, b = meshgrid[..., 0], meshgrid[..., 1] + grating = torch.sin(2 * np.pi * (a * np.cos(angle) + b * np.sin(angle)) / wavelength) + return grating + + +def random_spherical_wave(meshgrid : Tensor, wavelength : float) -> Tensor: + """ + Generate a random spherical wave grating, with origin at any random point in the image. + + Parameters + ---------- + meshgrid : Tensor + Meshgrid of the image with expected shape `(W, H[,D], N)`, + where N is the image dimension. + wavelength : float + Wavelength of the wave in voxels. + + Returns + ------- + Tensor + Random spherical wave image. + """ + + # generate a circular wave signal emanating from a random point in the image + ndim = meshgrid.ndim - 1 + delta = [np.random.uniform(0, s) for s in meshgrid.shape[:-1]] + if ndim == 3: + x, y, z = [meshgrid[..., d] - delta[d] for d in range(ndim)] + grating = torch.sin(torch.sqrt(x ** 2 + y ** 2 + z ** 2) * wavelength) + elif ndim == 2: + # TODO: implement this for 2D, shouldn't be that hard, just lazy + raise NotImplementedError('spherical waves not yet implemented for 2D images') + return grating + + +def random_cropping_mask(mask: Tensor) -> Tensor: + """ + Generate a random spatial cropping mask. + + Parameters + ---------- + mask : Tensor + Boolean mask image. The output mask will crop the region + represented by this mask along any axis. The resulting mask + will not crop the input mask by any more than 1/3 of the mask + width on either side. + + Returns + ------- + Tensor + Cropping mask image. + """ + # this code isn't pretty but basically it computes a bounding box around the + # pertinent tissue (determined by the mask or background label), randomly selects + # an axis (or two) as a 'crop axis', and moves that axis towards the tissue by + # some reasonable amount + shape = mask.shape[1:] + ndim = len(shape) - 1 + crop_mask = torch.zeros(shape, dtype=torch.bool, device=mask.device) + nonzeros = mask.nonzero()[:, 1:] + mincoord = nonzeros.min(0)[0].cpu() + maxcoord = nonzeros.max(0)[0].cpu() + 1 + bbox = tuple([slice(a, b) for a, b in zip(mincoord, maxcoord)]) + for _ in range(np.random.randint(1, 3)): + axis = np.random.randint(ndim) + s = bbox[axis] + # don't displace the crop axis by more than 1/3 the tissue width + displacement = int(np.random.uniform(0, (s.stop - s.start) / 3)) + cropping = [slice(0, d) for d in shape] + # either move the low axis up and the high axis down... if that makes any sense + if chance(0.5): + cropping[axis] = slice(0, s.start + displacement) + else: + cropping[axis] = slice(s.stop - displacement, shape[axis]) + crop_mask[tuple(cropping)] = 1 + return crop_mask.view(mask.shape) diff --git a/src/voxynth/filter.py b/src/voxynth/filter.py new file mode 100644 index 0000000000000000000000000000000000000000..f7e5a885db436ffa092df6c711d8f5b272c02275 --- /dev/null +++ b/src/voxynth/filter.py @@ -0,0 +1,168 @@ +import torch + +from typing import List +from torch import Tensor + + +def gaussian_kernel( + sigma: List[float], + truncate: int = 3, + device: torch.device = None) -> Tensor: + """ + Generate a Gaussian kernel with the specified standard deviations. + + Parameters + ---------- + sigma : List[float] + A list of standard deviations for each dimension. + truncate : int, optional + The number of standard deviations to extend the kernel before truncating. + device : torch.device, optional + The device on which to create the kernel. + + Returns + ------- + Tensor + A kernel of shape `(2 * truncate * sigma + 1,) * ndim`. + + Notes + ----- + The kernel is truncated when its values drop below `1e-5` of the maximum value. + """ + ndim = len(sigma) + + # compute the radii of the kernel for each dimension + radii = [int(truncate * s + 0.5) for s in sigma] + + # generate a range of indices for each dimension + ranges = [torch.arange(-r, r + 1, device=device) for r in radii] + + # create a meshgrid of indices for all dimensions and determine shape of the kernel + coords = torch.stack(torch.meshgrid(*ranges, indexing='ij'), dim=-1) + kernel_shape = coords.shape[:-1] + + # convert the standard deviations to a tensor and compute the inverse squares + sigma = torch.as_tensor(sigma, dtype=torch.float32, device=device) + sigma2 = 1 / torch.clip(sigma, min=1e-5).pow(2) + + # reshape the coordinates and compute the pdf + coords = coords.view(-1, ndim) + pdf = torch.exp(-0.5 * (coords.pow(2) * sigma2).sum(-1)).view(kernel_shape) + + # normalize the kernel + pdf /= pdf.sum() + return pdf + + +def gaussian_kernel_1d(sigma, truncate: int = 3, device=None, dtype=None): + """ + Generate a 1D Gaussian kernel with the specified standard deviations. + + Parameters + ---------- + sigma : float + A list of standard deviations for each dimension. + truncate : int, optional + The number of standard deviations to extend the kernel before truncating. + device : torch.device, optional + The device on which to create the kernel. + dtype : torch.dtype | None, optional + Data type of the returned kernel. + + Returns + ------- + Tensor + A kernel of shape `2 * truncate * sigma + 1`. + + Notes + ----- + The kernel is truncated when its values drop below `1e-5` of the maximum value. + """ + r = int(truncate * sigma + 0.5) + x = torch.arange(-r, r + 1, device=device, dtype=dtype) + sigma2 = 1 / torch.clip(torch.as_tensor(sigma), min=1e-5).pow(2) + pdf = torch.exp(-0.5 * (x.pow(2) * sigma2)) + return pdf / pdf.sum() + + +def gaussian_blur( + image: Tensor, + sigma: List[float], + batched: bool = False, + truncate: int = 3) -> Tensor: + """ + Apply Gaussian blurring to an image. + + Parameters + ---------- + image : Tensor + An input tensor of shape `(C, W, H[, D])` to blur. A batch dimension + can be included by setting `batched` to `True`. + sigma : float or List[float] + Standard deviation(s) of the Gaussian filter along each dimension. + batched : bool, optional + Whether the input tensor includes a batch dimension. + truncate : int, optional + The number of standard deviations to extend the kernel before truncating. + + Returns + ------- + Tensor + The blurred tensor with the same shape as the input tensor. + + Notes + ----- + The Gaussian filter is applied using convolution. The size of the filter kernel is + determined by the standard deviation and the truncation factor. + """ + ndim = image.ndim - (2 if batched else 1) + + # sanity check for common mistake + if ndim == 4 and not batched: + raise ValueError(f'gaussian blur input has {image.ndim} dims, ' + 'but batched option is False') + + # normalize sigmas + if torch.as_tensor(sigma).ndim == 0: + sigma = [sigma] * ndim + if len(sigma) != ndim: + raise ValueError(f'sigma must be {ndim}D, but got length {len(sigma)}') + + blurred = image if batched else image.unsqueeze(0) + + if all(s == sigma[0] for s in sigma): + # Isotropic, can use the same vector in all directions cases. Since + # creating the kernel is actually one of the most time intensive steps + # this is an efficiency gain worth exploiting + kernel_vec = gaussian_kernel_1d( + sigma[0], + truncate, + device=blurred.device, + dtype=blurred.dtype, + ) + kernel_vecs = [kernel_vec] * ndim + else: + # Three different kernels, one for each direction + kernel_vecs = [ + gaussian_kernel_1d( + s, + truncate, + device=blurred.device, + dtype=blurred.dtype, + ) + for s in sigma + ] + + for dim, kernel in enumerate(kernel_vecs): + + # apply the convolution + slices = [None] * (ndim + 2) + slices[dim + 2] = slice(None) + kernel_dim = kernel[slices] + conv = getattr(torch.nn.functional, f'conv{ndim}d') + blurred = conv(blurred, kernel_dim, groups=image.shape[0], padding="same") + + if not batched: + blurred = blurred.squeeze(0) + + return blurred diff --git a/src/voxynth/noise.py b/src/voxynth/noise.py new file mode 100644 index 0000000000000000000000000000000000000000..4141baa1feabd371639b0a0d49195d251df0c7c0 --- /dev/null +++ b/src/voxynth/noise.py @@ -0,0 +1,35 @@ +import math +import torch + +from typing import List +from torch import Tensor + +from .filter import gaussian_blur + + +def perlin(shape, smoothing, magnitude=1.0, device=None): + """ + Generates a perlin noise image. + + Parameters + ---------- + shape : List[int] + The desired shape of the output tensor. Can be 2D or 3D. + smoothing : float or List[float] + The spatial smoothing sigma in voxel coordinates. If a + single value is provided, it will be used for all dimensions. + magnitude : float or List[float] + The standard deviation of the noise across dimensions. If a single value is + provided, it will be used for all dimensions. + device : torch.device or None, optional + The device on which the output tensor is allocated. If None, defaults to CPU. + + Returns + ------- + Tensor + A Perlin noise image of shape `shape`. + """ + noise = torch.normal(0, 1, size=shape, device=device).unsqueeze(0) + noise = gaussian_blur(noise, smoothing).squeeze(0) + noise *= magnitude / noise.std() + return noise diff --git a/src/voxynth/synth.py b/src/voxynth/synth.py new file mode 100644 index 0000000000000000000000000000000000000000..a3cce7dca018e09289c4943f927c76e6b328948f --- /dev/null +++ b/src/voxynth/synth.py @@ -0,0 +1,103 @@ +import numpy as np +import torch + +from typing import Dict +from torch import Tensor + +from .utility import chance + + +def remap_intesities( + image: Tensor, + bins: int = 256) -> Tensor: + """ + Remap image intensities to a random distribution. + + Parameters + ---------- + image : torch.Tensor + Image to be remapped + bins : int, optional + The number of intensity bins to use when remapping the image. + The default value of 256 is appropriate for 8-bit images. + + Returns + ------- + torch.Tensor + Remapped image + """ + device = image.device + + image = image.type(torch.float32) - image.min() + image /= image.max() + image *= (bins - 1) + image = image.type(torch.int64) + + # these were somewhat arbitrarily chosen based on + # testing a few values + samples = 2 + radians = 1 + + # generate noise + noise = torch.ones(bins, device=device, dtype=torch.float32) + for i in range(samples): + low = np.random.uniform(-radians, 0) + high = np.random.uniform(0, radians) + noise *= torch.sin(torch.linspace(low, high, bins, + device=device, dtype=torch.float32)) + + noise -= noise.min() + noise /= noise.max() + return noise[image] + + +def densities_to_image(densities: Tensor) -> Tensor: + """ + Replace density values with random signal between 0 and 1. + + Parameters + ---------- + densities : torch.Tensor + Multi-channel image of class density (probability) values + + Returns + ------- + torch.Tensor + Synthetic image with the same geometry as the input `densities` tensor. + """ + dims = [1] * (densities.ndim - 1) + intensities = torch.rand(densities.shape[0], *dims) + return torch.sum(densities * intensities, axis=0).unsqueeze(0) + + +def labels_to_image( + labels: Tensor, + intensity_ranges: Dict = None) -> Tensor: + """ + Replace segmentation labels with random signal. + + Parameters + ---------- + labels : torch.Tensor + Image of integer segmentation labels + intensity_ranges : dict, optional + A dictionary mapping label values to intensity range tuples (low, high). + Intensity values will be randomly generated within the specified range + for each label. If not provided, a random intensity will be chosen for + each label. + + Returns + ------- + torch.Tensor + Synthetic image with the same shape as the input `labels` tensor. + """ + labels = labels.type(torch.int64) + max_label = labels.max() + 1 + if intensity_ranges is not None: + mapping = torch.zeros(max_label, device=labels.device, dtype=torch.float32) + for k, (low, high) in intensity_ranges.items(): + mapping[k] = np.random.uniform(low, high) + else: + mapping = torch.rand(max_label, device=labels.device, dtype=torch.float32) + image = mapping[labels] + return image diff --git a/src/voxynth/transform.py b/src/voxynth/transform.py new file mode 100644 index 0000000000000000000000000000000000000000..56999b3a925dfb365b37f50ba40f6609ca79b8d2 --- /dev/null +++ b/src/voxynth/transform.py @@ -0,0 +1,525 @@ +import numpy as np +import torch + +from typing import List +from torch import Tensor + +from .utility import chance +from .utility import grid_coordinates +from .noise import perlin + + +def resize( + image : Tensor, + scale_factor : float or List[float] = None, + shape : List[int] = None, + nearest : bool = False) -> Tensor: + """ + Resize an image with the option of scaling and/or setting to a new shape. + + Parameters: + ----------- + image: torch.Tensor + An input tensor with shape (C, H, W[, D]) to resize. + scale_factor: float or List[float], optional + Multiplicative factor(s) for scaling the input tensor. If a float, then the same + scale factor is applied to all spatial dimensions. If a tuple, then the scaling + factor for each dimension should be provided. + shape: List[int], optional + Target shape of the output tensor. + nearest: bool, optional + If True, use nearest neighbor interpolation. Otherwise, use linear interpolation. + + Returns: + -------- + torch.Tensor: + The resized tensor with the shape specified by `shape` or scaled by `scale_factor`. + """ + ndim = image.ndim - 1 + + # scale the image if the scale factor is provided + if scale_factor is not None and scale_factor != 1: + + # compute target shape based on the scale factor + target_shape = [int(s * scale_factor + 0.5) for s in image.shape[1:]] + + # convert image to float32 if it's not already to enable interpolation + # if using nearest interpolation, save the original dtype to convert back later + reset_type = None + if not torch.is_floating_point(image): + if nearest: + reset_type = image.dtype + image = image.type(torch.float32) + + # determine interpolation mode based on ndim and interpolation type + linear = 'trilinear' if image.ndim - 1 == 3 else 'bilinear' + mode = 'nearest' if nearest else linear + + # apply interpolation to the image + if nearest: + image = torch.nn.functional.interpolate(image.unsqueeze(0), target_shape, mode=mode) + else: + image = torch.nn.functional.interpolate(image.unsqueeze(0), target_shape, mode=mode) + image = image.squeeze(0) + + # convert image back to its original dtype if necessary + if reset_type is not None: + image = image.type(reset_type) + + if shape is not None: + + # compute padding for each spatial dimension + padding = [] + baseshape = image.shape[1:] + for d in range(ndim): + diff = shape[d] - baseshape[d] + if diff > 0: + half = diff / 2 + a, b = int(np.floor(half)), int(np.ceil(half)) + padding.extend([a, b]) + else: + padding.extend([0, 0]) + + # apply padding to the image + padding.reverse() + image = torch.nn.functional.pad(image, padding) + + # compute slice to remove excess dimensions + slicing = [slice(0, image.shape[0])] + baseshape = image.shape[1:] + for d in range(ndim): + diff = baseshape[d] - shape[d] + if diff > 0: + half = diff / 2 + a, b = int(np.floor(half)), int(np.ceil(half)) + slicing.append(slice(a, baseshape[d] - b)) + else: + slicing.append(slice(0, baseshape[d])) + + # apply slice to remove excess dimensions + image = image[tuple(slicing)] + + return image + + +def random_flip(dim : int, *args, prob : float = 0.5): + """ + Randomly flips an image (or set of images) along the given dimension. + + Parameters + ---------- + dim : int + The dimension along which to flip. Note that the first dimension + is the channel dimension. + *args : torch.Tensor + The image(s) to flip. + prob : float + The probability of flipping the image(s). + + Returns + ------- + torch.Tensor or tuple[torch.Tensor] + The flipped image(s). + """ + result = tuple([arg.flip([dim]) for arg in args]) if chance(prob) else args + if len(args) == 1: + return result[0] + return result + + +def compose_affine( + ndim : int, + translation : Tensor = None, + rotation : Tensor = None, + scale : Tensor = None, + shear : Tensor = None, + degrees : bool = True, + device : torch.device = None) -> Tensor: + """ + Composes an affine matrix from a set of translation, rotation, scale, + and shear transform components. + + Parameters + ---------- + ndim (int): + The number of dimensions of the affine matrix. Must be 2 or 3. + translation : Tensor, optional + The translation vector. Must be a vector of size `ndim`. + rotation : Tensor, optional + The rotation angles. Must be a scalar value for 2D affine matrices, + and a tensor of size 3 for 3D affine matrices. + scale : Tensor, optional + The scaling factor. Can be scalar or vector of size `ndim`. + shear : Tensor, optional + The shearing factor. Must be a scalar value for 2D affine matrices, + and a tensor of size 3 for 3D affine matrices. + degrees : bool, optional + Whether to interpret the rotation angles as degrees. + device : torch.device, optional + The device of the returned matrix. + + Returns + ------- + Tensor + The composed affine matrix, as a tensor of shape `(ndim + 1, ndim + 1)`. + """ + if ndim not in (2, 3): + raise ValueError(f'affine transform must be 2D or 3D, got ndim {ndim}') + + # check translation + translation = torch.zeros(ndim) if translation is None else torch.as_tensor(translation) + if len(translation) != ndim: + raise ValueError(f'translation must be of shape ({ndim},)') + + # check rotation angles + expected = 3 if ndim == 3 else 1 + rotation = torch.zeros(expected) if rotation is None else torch.as_tensor(rotation) + if rotation.ndim == 0 and ndim == 3 or rotation.ndim != 0 and rotation.shape[0] != expected: + raise ValueError(f'rotation must be of shape ({expected},)') + + # check scaling factor + scale = torch.ones(ndim) if scale is None else torch.as_tensor(scale) + if scale.ndim == 0: + scale = scale.repeat(ndim) + if scale.shape[0] != ndim: + raise ValueError(f'scale must be of size {ndim}') + + # check shearing + expected = 3 if ndim == 3 else 1 + shear = torch.zeros(expected) if shear is None else torch.as_tensor(shear) + if shear.ndim == 0: + shear = shear.view(1) + if shear.shape[0] != expected: + raise ValueError(f'shear must be of shape ({expected},)') + + # start from translation + T = torch.eye(ndim + 1, dtype=torch.float64) + T[:ndim, -1] = translation + + # rotation matrix + R = torch.eye(ndim + 1, dtype=torch.float64) + R[:ndim, :ndim] = angles_to_rotation_matrix(rotation, degrees=degrees) + + # scaling + Z = torch.diag(torch.cat([scale, torch.ones(1, dtype=torch.float64)])) + + # shear matrix + S = torch.eye(ndim + 1, dtype=torch.float64) + S[0][1] = shear[0] + if ndim == 3: + S[0][2] = shear[1] + S[1][2] = shear[2] + + # compose component matrices + matrix = T @ R @ Z @ S + + return torch.as_tensor(matrix, dtype=torch.float32, device=device) + + +def angles_to_rotation_matrix( + rotation : Tensor, + degrees : bool = True) -> Tensor: + """ + Compute a rotation matrix from the given rotation angles. + + Parameters + ---------- + rotation : Tensor + A tensor containing the rotation angles. If `degrees` is True, the angles + are in degrees, otherwise they are in radians. + degrees : bool, optional + Whether to interpret the rotation angles as degrees. + + Returns + ------- + Tensor + The computed `(ndim + 1, ndim + 1)` rotation matrix. + """ + if degrees: + rotation = torch.deg2rad(rotation) + + # scalar value allowed for 2D transforms + rotation = torch.as_tensor(rotation) + if rotation.ndim == 0: + rotation = rotation.view(1) + num_angles = len(rotation) + + # build the matrix + if num_angles == 1: + c, s = torch.cos(rotation[0]), torch.sin(rotation[0]) + matrix = torch.tensor([[c, -s], [s, c]], dtype=torch.float64) + elif num_angles == 3: + c, s = torch.cos(rotation[0]), torch.sin(rotation[0]) + rx = torch.tensor([[1, 0, 0], [0, c, s], [0, -s, c]], dtype=torch.float64) + c, s = torch.cos(rotation[1]), torch.sin(rotation[1]) + ry = torch.tensor([[c, 0, s], [0, 1, 0], [-s, 0, c]], dtype=torch.float64) + c, s = torch.cos(rotation[2]), torch.sin(rotation[2]) + rz = torch.tensor([[c, s, 0], [-s, c, 0], [0, 0, 1]], dtype=torch.float64) + matrix = rx @ ry @ rz + else: + raise ValueError(f'expected 1 (2D) or 3 (3D) rotation angles, got {num_angles}') + + return matrix.to(rotation.device) + + +def random_affine( + ndim: int, + max_translation: float = 0, + max_rotation: float = 0, + max_scaling: float = 1, + device: torch.device = None) -> Tensor: + """ + TODOC + """ + + # + translation_range = sorted([-max_translation, max_translation]) + translation = np.random.uniform(*translation_range, size=ndim) + + # + rotation_range = sorted([-max_rotation, max_rotation]) + rotation = np.random.uniform(*rotation_range, size=(1 if ndim == 2 else 3)) + + # + if max_scaling < 1: + raise ValueError('max scaling to random affine cannot be less than 1, ' + 'see function doc for more info') + inv = np.random.choice([-1, 1], size=ndim) + scale = np.random.uniform(1, max_scaling, size=ndim) ** inv + + # compose from random paramters + aff = compose_affine( + ndim=ndim, + translation=translation, + rotation=rotation, + scale=scale, + device=device) + return aff + + +def affine_to_displacement_field( + affine : Tensor, + meshgrid : Tensor, + rotate_around_center : bool = True) -> Tensor: + """ + Convert an affine transformation matrix to a dense displacement field. + + Parameters + ---------- + affine : Tensor + Affine transformation matrix. + meshgrid : Tensor + The meshgrid tensor of shape `(W, H[, D], N)`, where N is the spatial dimensionality. + rotate_around_center : bool, optional + If True, the rotation will be around the center of the image, otherwise around the origin. + + Returns + ------- + Tensor + The generated displacement field of shape `meshgrid.shape[:-1]`. + """ + ndim = meshgrid.shape[-1] + shape = meshgrid.shape[:-1] + + # if rotate_around_center is enabled, adjust the meshgrid so that the rotation + # is around the center of the image instead of the origin + grid = meshgrid.clone() if rotate_around_center else meshgrid + if rotate_around_center: + for d in range(ndim): + grid[..., d] -= (shape[d] - 1) / 2 + + # convert the meshgrid to homogeneous coordinates by appending a column of ones + coords = grid.view(-1, ndim) + ones = torch.ones((coords.shape[-2], 1), device=meshgrid.device) + coords = torch.cat([coords, ones], dim=-1) + + # apply the affine transformation to the coordinates to get the shift vector + shift = (affine @ coords.T)[:ndim].T + + # reshape the shift vector to match the shape of the meshgrid and subtract + # the original meshgrid to get the displacement field + shift = shift.view(*shape, ndim) - grid + + return shift + + +def integrate_displacement_field( + disp : Tensor, + steps : int, + meshgrid : Tensor = None) -> Tensor: + """ + TODOC + """ + if meshgrid is None: + meshgrid = grid_coordinates(disp.shape[:-1], device=disp.device) + + if steps == 0: + return disp + + disp = disp / (2 ** steps) + for _ in range(steps): + disp += spatial_transform(disp.movedim(-1, 0), disp, meshgrid=meshgrid).movedim(0, -1) + + return disp + + +def random_displacement_field( + shape : List[int], + smoothing : float = 10, + magnitude : float = 10, + integrations : int = 0, + voxsize : float = 1, + meshgrid : Tensor = None, + device: torch.device = None) -> Tensor: + """ + TODOC + """ + smoothing = smoothing / voxsize + magnitude = magnitude / voxsize + + ndim = len(shape) + disp = [perlin(shape, smoothing, magnitude, device=device) for i in range(ndim)] + disp = torch.stack(disp, dim=-1) + + if integrations > 0: + disp = integrate_displacement_field(disp, integrations, meshgrid) + + return disp + + +def displacement_field_to_coords(disp, meshgrid=None) -> Tensor: + """ + TODOC + """ + if meshgrid is None: + meshgrid = grid_coordinates(disp.shape[:-1], device=disp.device) + + shape = disp.shape[:-1] + ndim = disp.shape[-1] + + coords = (meshgrid + disp) + for d in range(ndim): + coords[..., d] *= 2 / (shape[d] - 1) + coords[..., d] -= 1 + + coords = coords.flip(-1) + + return coords + + +def coords_to_displacement_field(coords, meshgrid=None) -> Tensor: + """ + TODOC + """ + if meshgrid is None: + meshgrid = grid_coordinates(coords.shape[:-1], device=coords.device) + + raise NotImplementedError('coords_to_displacement_field is not yet implemented. ' + 'contact andrew if you get this... or implement it :)') + + +def spatial_transform( + image : Tensor, + trf : Tensor, + method : str = 'linear', + isdisp : bool = True, + meshgrid : Tensor = None, + rotate_around_center : bool = True) -> Tensor: + """ + TODOC + """ + if trf is None: + return image + + if trf.ndim == 2: + if meshgrid is None: + meshgrid = grid_coordinates(image.shape[1:], device=image.device) + trf = torch.linalg.inv(trf) + trf = affine_to_displacement_field(trf, meshgrid, + rotate_around_center=rotate_around_center) + isdisp = True + + # + if isdisp: + trf = displacement_field_to_coords(trf, meshgrid=meshgrid) + + # + method = 'bilinear' if method == 'linear' else method + + # + reset_type = None + if not torch.is_floating_point(image): + if method == 'nearest': + reset_type = image.dtype + image = image.type(torch.float32) + + # + image = image.unsqueeze(0) + trf = trf.unsqueeze(0) + interped = torch.nn.functional.grid_sample(image, trf, align_corners=True, mode=method) + interped = interped.squeeze(0) + + # + if reset_type is not None: + interped = interped.type(reset_type) + + return interped + + +def random_transform( + shape : List[int], + affine_probability : float = 1.0, + max_translation : float = 5.0, + max_rotation : float = 5.0, + max_scaling : float = 1.1, + warp_probability : float = 1.0, + warp_integrations : int = 5, + warp_smoothing_range : List[int] = [10, 20], + warp_magnitude_range : List[int] = [1, 2], + voxsize : int = 1, + device : torch.device = None, + isdisp : bool = True, + ) -> Tensor: + """ + TODOC + """ + ndim = len(shape) + trf = None + + # generate a random affine + if chance(affine_probability): + + # compute meshgrid + meshgrid = grid_coordinates(shape, device=device) + + # scale max translation value so that it correctly corresponds to mm + max_translation = max_translation / voxsize + matrix = random_affine( + ndim=ndim, + max_translation=max_translation, + max_rotation=max_rotation, + max_scaling=max_scaling, + device=device) + trf = affine_to_displacement_field(matrix, meshgrid) + + # generate a nonlinear transform + if chance(warp_probability): + disp = random_displacement_field( + shape=shape, + smoothing=np.random.uniform(*warp_smoothing_range), + magnitude=np.random.uniform(*warp_magnitude_range), + integrations=warp_integrations, + voxsize=voxsize, + device=device) + + # merge with the affine transform if necessary + if trf is None: + trf = disp + else: + trf += spatial_transform(disp.movedim(-1, 0), trf, meshgrid=meshgrid).movedim(0, -1) + + # convert to coordinates if specified + if trf is not None and not isdisp: + trf = displacement_field_to_coords(trf) + + return trf diff --git a/src/voxynth/utility.py b/src/voxynth/utility.py new file mode 100644 index 0000000000000000000000000000000000000000..5d4f184e388a739e6d0d3146d6970a20696c1eab --- /dev/null +++ b/src/voxynth/utility.py @@ -0,0 +1,66 @@ +import numpy as np +import torch +from torch import Tensor + + +def seed(seed: int = None): + """ + Sets the seed for both the numpy and PyTorch random number generators. + + Parameters + ---------- + seed : int or None, optional + Seed value to be used for random number generation. If None (default), + the seed is set to 0. + """ + if seed is None: + seed = 0 + np.random.seed(seed) + torch.manual_seed(seed) + + +def chance(prob: float) -> bool: + """ + Returns True with given probability. + + Parameters + ---------- + prob : float + Probability of returning True. Must be in the range [0, 1]. + + Returns + ------- + bool + True with probability `prob`. + """ + if prob < 0.0 or prob > 1.0: + raise ValueError(f'chance() expected a value in the range [0, 1], but got {prob}') + return np.random.rand() < prob + + +def grid_coordinates(shape, device : torch.device = None) -> Tensor: + """ + TODOC + """ + ranges = [torch.arange(s, dtype=torch.float32, device=device) for s in shape] + meshgrid = torch.stack(torch.meshgrid(*ranges, indexing='ij'), dim=-1) + return meshgrid + + +def quantile(arr, q): + """ + TODOC + """ + if q < 0 or q > 1: + raise ValueError(f'quantile must be between 0 and 1, got {q}') + if q == 0: + return arr.min() + if q == 1: + return arr.max() + arr = arr.flatten() + if q > 0.5: + k = int(arr.numel() * (1.0 - q)) + 1 + return arr.topk(k, largest=True, sorted=False).values.min() + else: + k = int(arr.numel() * q) + 1 + return arr.topk(k, largest=False, sorted=False).values.max() diff --git a/train_segmamba_lits.log b/train_segmamba_lits.log new file mode 100644 index 0000000000000000000000000000000000000000..a1fe39cbc88ac19981a214737f43cd5d12aaf8b2 --- /dev/null +++ b/train_segmamba_lits.log @@ -0,0 +1,59340 @@ +/home/zeus/miniconda3/envs/cloudspace/lib/python3.12/site-packages/mamba_ssm/ops/selective_scan_interface.py:158: FutureWarning: `torch.cuda.amp.custom_fwd(args...)` is deprecated. Please use `torch.amp.custom_fwd(args..., device_type='cuda')` instead. + @custom_fwd +/home/zeus/miniconda3/envs/cloudspace/lib/python3.12/site-packages/mamba_ssm/ops/selective_scan_interface.py:227: FutureWarning: `torch.cuda.amp.custom_bwd(args...)` is deprecated. Please use `torch.amp.custom_bwd(args..., device_type='cuda')` instead. + @custom_bwd +/home/zeus/miniconda3/envs/cloudspace/lib/python3.12/site-packages/mamba_ssm/ops/selective_scan_interface.py:295: FutureWarning: `torch.cuda.amp.custom_fwd(args...)` is deprecated. Please use `torch.amp.custom_fwd(args..., device_type='cuda')` instead. + @custom_fwd +/home/zeus/miniconda3/envs/cloudspace/lib/python3.12/site-packages/mamba_ssm/ops/selective_scan_interface.py:368: FutureWarning: `torch.cuda.amp.custom_bwd(args...)` is deprecated. Please use `torch.amp.custom_bwd(args..., device_type='cuda')` instead. + @custom_bwd +/home/zeus/miniconda3/envs/cloudspace/lib/python3.12/site-packages/mamba_ssm/ops/selective_scan_interface.py:440: FutureWarning: `torch.cuda.amp.custom_fwd(args...)` is deprecated. Please use `torch.amp.custom_fwd(args..., device_type='cuda')` instead. + @custom_fwd +/home/zeus/miniconda3/envs/cloudspace/lib/python3.12/site-packages/mamba_ssm/ops/selective_scan_interface.py:520: FutureWarning: `torch.cuda.amp.custom_bwd(args...)` is deprecated. Please use `torch.amp.custom_bwd(args..., device_type='cuda')` instead. + @custom_bwd +/home/zeus/miniconda3/envs/cloudspace/lib/python3.12/site-packages/mamba_ssm/ops/triton/layernorm.py:508: FutureWarning: `torch.cuda.amp.custom_fwd(args...)` is deprecated. Please use `torch.amp.custom_fwd(args..., device_type='cuda')` instead. + @custom_fwd +/home/zeus/miniconda3/envs/cloudspace/lib/python3.12/site-packages/mamba_ssm/ops/triton/layernorm.py:567: FutureWarning: `torch.cuda.amp.custom_bwd(args...)` is deprecated. Please use `torch.amp.custom_bwd(args..., device_type='cuda')` instead. + @custom_bwd +[21:22:00.610] Namespace(data='lits', save_dir='./implementation/lits/segmamba_lits', data_dir='/teamspace/studios/this_studio/lits', num_workers=2, split='train', use_small_dataset=False, model_type='segmamba', lr=4e-05, lr_scheduler='linear', warm_up=False, device='cuda:0', max_epoch=20, image_size=128, batch_size=2, checkpoint='best', checkpoint_sam='./checkpoint_sam/sam_vit_b_01ec64.pth', num_classes=2, tolerance=5, boundary_kernel_size=5, use_pretrain=False, pretrain_path='', resume=False, resume_best=False, ddp=False, gpu_ids=[0, 1], accumulation_steps=20, iter_nums=11, num_clicks=50, num_clicks_validation=10, use_box=True, dynamic_box=False, use_scribble=True, num_multiple_outputs=3, multiple_outputs=True, refine=True, no_detach=False, refine_test=False, dynamic=True, efficient_scribble=True, use_sam3d_turbo=False, save_predictions=False, save_csv=False, save_test_dir='./', save_name='segmamba_lits') +Unet_decoder features: (32, 32, 64, 128, 384, 32). +dataloaders are created, models are loaded, and others are set, spent 0.31 for rank -1 +/teamspace/studios/this_studio/PRISM/src/processor/trainer_basic.py:43: FutureWarning: `torch.cuda.amp.GradScaler(args...)` is deprecated. Please use `torch.amp.GradScaler('cuda', args...)` instead. + self.scaler = amp.GradScaler() +/teamspace/studios/this_studio/PRISM/src/processor/trainer_basic.py:74: FutureWarning: `torch.cuda.amp.autocast(args...)` is deprecated. Please use `torch.amp.autocast('cuda', args...)` instead. + with amp.autocast(): +num_clicks 50 points_length: 20340 dynamic_size: 48 +filter out voxels: 0 +/teamspace/studios/this_studio/PRISM/src/voxynth/filter.py:161: UserWarning: Using a non-tuple sequence for multidimensional indexing is deprecated and will be changed in pytorch 2.9; use x[tuple(seq)] instead of x[seq]. In pytorch 2.9 this will be interpreted as tensor index, x[torch.tensor(seq)], which will result either in an error or a different result (Triggered internally at /pytorch/torch/csrc/autograd/python_variable_indexing.cpp:316.) + kernel_dim = kernel[slices] +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +/home/zeus/miniconda3/envs/cloudspace/lib/python3.12/site-packages/torch/_tensor.py:1669: UserWarning: Converting a tensor with requires_grad=True to a scalar may lead to unexpected behavior. +Consider using tensor.detach() first. (Triggered internally at /pytorch/torch/csrc/autograd/generated/python_variable_methods.cpp:835.) + ret = func(*args, **kwargs) +dice before refine 0.03537740930914879 and after 0.019346658140420914 +num_clicks 50 points_length: 628951 dynamic_size: 45 +filter out voxels: 47632 +filter out voxels: 355957 +First batch: fn: 0.8984, fp: 5.5703, label 0: tensor(539), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0638810396194458 and after 0.059829533100128174 +num_clicks 50 points_length: 1054507 dynamic_size: 26 +filter out voxels: 80704 +filter out voxels: 641472 +First batch: fn: 0.5721, fp: 7.6170, label 0: tensor(525), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06430156528949738 and after 0.05956554412841797 +num_clicks 50 points_length: 1071106 dynamic_size: 40 +filter out voxels: 75433 +filter out voxels: 647640 +First batch: fn: 0.5795, fp: 7.5098, label 0: tensor(538), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06292004138231277 and after 0.05978623032569885 +num_clicks 50 points_length: 1113569 dynamic_size: 1 +filter out voxels: 79731 +filter out voxels: 672706 +First batch: fn: 0.5501, fp: 7.7470, label 0: tensor(501), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06297022104263306 and after 0.06054769456386566 +num_clicks 50 points_length: 988537 dynamic_size: 9 +filter out voxels: 80564 +filter out voxels: 583510 +First batch: fn: 0.5226, fp: 7.7435, label 0: tensor(508), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.064400315284729 and after 0.06046586483716965 +num_clicks 50 points_length: 1084717 dynamic_size: 29 +filter out voxels: 74705 +filter out voxels: 650679 +First batch: fn: 0.5668, fp: 7.3849, label 0: tensor(526), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06823274493217468 and after 0.07007172703742981 +num_clicks 50 points_length: 1121686 dynamic_size: 30 +filter out voxels: 85769 +filter out voxels: 680081 +First batch: fn: 0.4364, fp: 7.8410, label 0: tensor(529), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0572209432721138 and after 0.05067117139697075 +num_clicks 50 points_length: 919072 dynamic_size: 23 +filter out voxels: 74592 +filter out voxels: 553178 +First batch: fn: 0.6425, fp: 7.4252, label 0: tensor(523), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06327590346336365 and after 0.059738703072071075 +num_clicks 50 points_length: 1021679 dynamic_size: 36 +filter out voxels: 81364 +filter out voxels: 609502 +First batch: fn: 0.5378, fp: 7.7524, label 0: tensor(533), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0669969841837883 and after 0.06643503904342651 +num_clicks 50 points_length: 1039050 dynamic_size: 4 +filter out voxels: 81447 +filter out voxels: 620801 +First batch: fn: 0.4899, fp: 7.6739, label 0: tensor(504), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.053551994264125824 and after 0.037661612033843994 +epoch: 0/20, iter: 0/42: loss:7.7643: rank:-1 +[21:22:50.638] epoch: 0/20, iter: 0/42: loss:7.7643: rank:-1 +num_clicks 50 points_length: 2127 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03096989169716835 and after 0.0379861481487751 +num_clicks 50 points_length: 109281 dynamic_size: 18 +filter out voxels: 87459 +filter out voxels: 16427 +First batch: fn: 0.9638, fp: 50.4142, label 0: tensor(518), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.039188142865896225 and after 0.050704438239336014 +num_clicks 50 points_length: 314535 dynamic_size: 38 +filter out voxels: 571661 +filter out voxels: 26657 +First batch: fn: 0.1754, fp: 322.0780, label 0: tensor(538), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.033334579318761826 and after 0.04216175153851509 +num_clicks 50 points_length: 255113 dynamic_size: 14 +filter out voxels: 645006 +filter out voxels: 18778 +First batch: fn: 0.5891, fp: 343.5209, label 0: tensor(514), label 1: tensor(245) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04082118719816208 and after 0.0544513463973999 +num_clicks 50 points_length: 249897 dynamic_size: 44 +filter out voxels: 258859 +filter out voxels: 21563 +First batch: fn: 0.4311, fp: 147.0724, label 0: tensor(544), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03898022323846817 and after 0.04796238988637924 +num_clicks 50 points_length: 321502 dynamic_size: 45 +filter out voxels: 537951 +filter out voxels: 29045 +First batch: fn: 0.2045, fp: 303.7809, label 0: tensor(545), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.041739411652088165 and after 0.04901302605867386 +num_clicks 50 points_length: 602129 dynamic_size: 40 +filter out voxels: 659852 +filter out voxels: 59785 +First batch: fn: 0.4927, fp: 352.0611, label 0: tensor(540), label 1: tensor(158) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03891590237617493 and after 0.047005534172058105 +num_clicks 50 points_length: 350373 dynamic_size: 49 +filter out voxels: 488071 +filter out voxels: 29661 +First batch: fn: 0.1707, fp: 276.9789, label 0: tensor(549), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03779343515634537 and after 0.04417743533849716 +num_clicks 50 points_length: 448809 dynamic_size: 5 +filter out voxels: 609842 +filter out voxels: 36895 +First batch: fn: 0.7151, fp: 324.8547, label 0: tensor(505), label 1: tensor(273) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.044573258608579636 and after 0.055733662098646164 +num_clicks 50 points_length: 288498 dynamic_size: 28 +filter out voxels: 234317 +filter out voxels: 41776 +First batch: fn: 0.5839, fp: 135.0522, label 0: tensor(528), label 1: tensor(290) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04379553347826004 and after 0.05502166971564293 +num_clicks 50 points_length: 380644 dynamic_size: 42 +filter out voxels: 341570 +filter out voxels: 36967 +First batch: fn: 0.3145, fp: 194.1171, label 0: tensor(542), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03656694293022156 and after 0.04327816516160965 +epoch: 0/20, iter: 1/42: loss:7.6816: rank:-1 +[21:23:12.007] epoch: 0/20, iter: 1/42: loss:7.6816: rank:-1 +num_clicks 50 points_length: 3522 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0022060417104512453 and after 0.0028491755947470665 +num_clicks 50 points_length: 30299 dynamic_size: 23 +filter out voxels: 73439 +filter out voxels: 25174 +First batch: fn: 0.9497, fp: 16.5925, label 0: tensor(21), label 1: tensor(317) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0037240455858409405 and after 0.0030304333195090294 +num_clicks 50 points_length: 84187 dynamic_size: 25 +filter out voxels: 629738 +filter out voxels: 75849 +First batch: fn: 0.6558, fp: 144.1132, label 0: tensor(130), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0033330339938402176 and after 0.001608384889550507 +num_clicks 50 points_length: 50789 dynamic_size: 20 +filter out voxels: 487407 +filter out voxels: 44481 +First batch: fn: 0.8261, fp: 111.0710, label 0: tensor(20), label 1: tensor(423) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.003306472906842828 and after 0.0019885110668838024 +num_clicks 50 points_length: 60502 dynamic_size: 26 +filter out voxels: 513824 +filter out voxels: 53639 +First batch: fn: 0.7936, fp: 117.3758, label 0: tensor(69), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0035541015677154064 and after 0.0023551860358566046 +num_clicks 50 points_length: 83054 dynamic_size: 46 +filter out voxels: 511962 +filter out voxels: 75164 +First batch: fn: 0.8468, fp: 116.8513, label 0: tensor(143), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.003139250911772251 and after 0.001197103294543922 +num_clicks 50 points_length: 52900 dynamic_size: 29 +filter out voxels: 531366 +filter out voxels: 46568 +First batch: fn: 0.8610, fp: 120.7810, label 0: tensor(29), label 1: tensor(492) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0033738338388502598 and after 0.0017133837100118399 +num_clicks 50 points_length: 60395 dynamic_size: 22 +filter out voxels: 515498 +filter out voxels: 53716 +First batch: fn: 0.8453, fp: 117.8284, label 0: tensor(70), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0032902704551815987 and after 0.0014916285872459412 +num_clicks 50 points_length: 59511 dynamic_size: 21 +filter out voxels: 481003 +filter out voxels: 52897 +First batch: fn: 0.8905, fp: 109.7363, label 0: tensor(161), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0031019262969493866 and after 0.0008206827915273607 +num_clicks 50 points_length: 38722 dynamic_size: 34 +filter out voxels: 473177 +filter out voxels: 33072 +First batch: fn: 0.9110, fp: 107.3378, label 0: tensor(34), label 1: tensor(360) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00361662358045578 and after 0.0020859912037849426 +num_clicks 50 points_length: 64982 dynamic_size: 44 +filter out voxels: 508706 +filter out voxels: 58022 +First batch: fn: 0.8618, fp: 115.9955, label 0: tensor(261), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.002915513701736927 and after 0.0009594236616976559 +epoch: 0/20, iter: 2/42: loss:7.8668: rank:-1 +[21:23:28.390] epoch: 0/20, iter: 2/42: loss:7.8668: rank:-1 +num_clicks 50 points_length: 21524 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(363) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.012279379181563854 and after 0.0018556802533566952 +num_clicks 50 points_length: 57233 dynamic_size: 47 +filter out voxels: 117338 +filter out voxels: 26683 +First batch: fn: 0.9925, fp: 6.8987, label 0: tensor(543), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.015010213479399681 and after 0.0038082138635218143 +num_clicks 50 points_length: 57482 dynamic_size: 36 +filter out voxels: 109473 +filter out voxels: 27327 +First batch: fn: 0.9946, fp: 6.3277, label 0: tensor(534), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.014044229872524738 and after 0.004478227812796831 +num_clicks 50 points_length: 57129 dynamic_size: 34 +filter out voxels: 41993 +filter out voxels: 27233 +First batch: fn: 0.9962, fp: 2.3054, label 0: tensor(526), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01661391369998455 and after 0.004922258667647839 +num_clicks 50 points_length: 56893 dynamic_size: 39 +filter out voxels: 168039 +filter out voxels: 26912 +First batch: fn: 0.9850, fp: 8.8953, label 0: tensor(532), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.015678049996495247 and after 0.0055343168787658215 +num_clicks 50 points_length: 59330 dynamic_size: 35 +filter out voxels: 263138 +filter out voxels: 28933 +First batch: fn: 0.9808, fp: 14.0324, label 0: tensor(534), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01484287716448307 and after 0.00991164892911911 +num_clicks 50 points_length: 61708 dynamic_size: 33 +filter out voxels: 49420 +filter out voxels: 31203 +First batch: fn: 0.9833, fp: 2.6773, label 0: tensor(523), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.017547864466905594 and after 0.007854866795241833 +num_clicks 50 points_length: 60772 dynamic_size: 25 +filter out voxels: 143118 +filter out voxels: 30196 +First batch: fn: 0.9795, fp: 8.0733, label 0: tensor(523), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.012936608865857124 and after 0.009435665793716908 +num_clicks 50 points_length: 55537 dynamic_size: 21 +filter out voxels: 45178 +filter out voxels: 25992 +First batch: fn: 0.9791, fp: 2.4672, label 0: tensor(511), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.014424588531255722 and after 0.0051759518682956696 +num_clicks 50 points_length: 50449 dynamic_size: 48 +filter out voxels: 135231 +filter out voxels: 22514 +First batch: fn: 0.9808, fp: 7.4798, label 0: tensor(540), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01503569632768631 and after 0.009115648455917835 +num_clicks 50 points_length: 61381 dynamic_size: 16 +filter out voxels: 157177 +filter out voxels: 30688 +First batch: fn: 0.9799, fp: 8.7719, label 0: tensor(511), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.013431197963654995 and after 0.005234937649220228 +epoch: 0/20, iter: 3/42: loss:7.2042: rank:-1 +[21:23:53.464] epoch: 0/20, iter: 3/42: loss:7.2042: rank:-1 +num_clicks 50 points_length: 895 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0015067027416080236 and after 0.0020832056179642677 +num_clicks 50 points_length: 6047 dynamic_size: 43 +filter out voxels: 4091 +filter out voxels: 9751 +First batch: fn: 1.0000, fp: 5.7564, label 0: tensor(258), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0013121841475367546 and after 0.002655706135556102 +num_clicks 50 points_length: 20880 dynamic_size: 37 +filter out voxels: 42141 +filter out voxels: 13105 +First batch: fn: 0.9978, fp: 62.1039, label 0: tensor(537), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0016579474322497845 and after 0.002777286572381854 +num_clicks 50 points_length: 81817 dynamic_size: 41 +filter out voxels: 179360 +filter out voxels: 63068 +First batch: fn: 0.9955, fp: 245.7441, label 0: tensor(541), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001705026370473206 and after 0.0024345004931092262 +num_clicks 50 points_length: 17271 dynamic_size: 48 +filter out voxels: 109475 +filter out voxels: 9781 +First batch: fn: 0.9978, fp: 153.6592, label 0: tensor(547), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0016235574148595333 and after 0.002905295928940177 +num_clicks 50 points_length: 88310 dynamic_size: 37 +filter out voxels: 133663 +filter out voxels: 68634 +First batch: fn: 0.9978, fp: 186.2514, label 0: tensor(536), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0016619489761069417 and after 0.0027766809798777103 +num_clicks 50 points_length: 19130 dynamic_size: 31 +filter out voxels: 225721 +filter out voxels: 11215 +First batch: fn: 0.9933, fp: 311.8168, label 0: tensor(531), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0015473352978006005 and after 0.00261319731362164 +num_clicks 50 points_length: 75413 dynamic_size: 1 +filter out voxels: 57009 +filter out voxels: 80463 +First batch: fn: 0.9978, fp: 83.2626, label 0: tensor(501), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001206365879625082 and after 0.0032494645565748215 +num_clicks 50 points_length: 17524 dynamic_size: 11 +filter out voxels: 135699 +filter out voxels: 10213 +First batch: fn: 0.9966, fp: 187.2480, label 0: tensor(511), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0013971887528896332 and after 0.0020400232169777155 +num_clicks 50 points_length: 56800 dynamic_size: 47 +filter out voxels: 42203 +filter out voxels: 115023 +First batch: fn: 1.0000, fp: 62.4637, label 0: tensor(546), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011449229205027223 and after 0.004104494582861662 +num_clicks 50 points_length: 18188 dynamic_size: 28 +filter out voxels: 109047 +filter out voxels: 10704 +First batch: fn: 0.9978, fp: 151.7799, label 0: tensor(526), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0016559504438191652 and after 0.0035939677618443966 +epoch: 0/20, iter: 4/42: loss:7.3394: rank:-1 +[21:24:10.595] epoch: 0/20, iter: 4/42: loss:7.3394: rank:-1 +num_clicks 50 points_length: 674 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002996185212396085 and after 0.0 +num_clicks 50 points_length: 37277 dynamic_size: 16 +filter out voxels: 118465 +filter out voxels: 32184 +First batch: fn: 1.0000, fp: 193.8234, label 0: tensor(286), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00012784224236384034 and after 0.0 +num_clicks 50 points_length: 44068 dynamic_size: 13 +filter out voxels: 83135 +filter out voxels: 38510 +First batch: fn: 1.0000, fp: 133.6543, label 0: tensor(322), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001271844666916877 and after 6.1136279327911325e-06 +num_clicks 50 points_length: 38567 dynamic_size: 37 +filter out voxels: 152514 +filter out voxels: 33579 +First batch: fn: 0.9985, fp: 241.6825, label 0: tensor(234), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00019592639000620693 and after 0.0 +num_clicks 50 points_length: 2017 dynamic_size: 47 +filter out voxels: 1299 +filter out voxels: 37771 +First batch: fn: 1.0000, fp: 1.9926, label 0: tensor(47), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 5.378223431762308e-05 and after 0.0 +num_clicks 50 points_length: 1883 dynamic_size: 21 +filter out voxels: 1168 +filter out voxels: 36676 +First batch: fn: 1.0000, fp: 1.7938, label 0: tensor(20), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00026137122767977417 and after 0.0 +num_clicks 50 points_length: 1848 dynamic_size: 25 +filter out voxels: 1137 +filter out voxels: 43763 +First batch: fn: 1.0000, fp: 1.7418, label 0: tensor(18), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002960824640467763 and after 0.0 +num_clicks 50 points_length: 2054 dynamic_size: 12 +filter out voxels: 1340 +filter out voxels: 43849 +First batch: fn: 1.0000, fp: 2.0475, label 0: tensor(20), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002746391692198813 and after 0.0 +num_clicks 50 points_length: 1909 dynamic_size: 22 +filter out voxels: 1199 +filter out voxels: 38743 +First batch: fn: 1.0000, fp: 1.8323, label 0: tensor(24), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002155209076590836 and after 0.0 +num_clicks 50 points_length: 48458 dynamic_size: 30 +filter out voxels: 69414 +filter out voxels: 42511 +First batch: fn: 1.0000, fp: 110.7938, label 0: tensor(408), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001268470223294571 and after 0.0 +num_clicks 50 points_length: 34064 dynamic_size: 37 +filter out voxels: 140017 +filter out voxels: 29217 +First batch: fn: 1.0000, fp: 222.1513, label 0: tensor(251), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00018551760877016932 and after 0.0 +epoch: 0/20, iter: 5/42: loss:7.031: rank:-1 +[21:24:23.173] epoch: 0/20, iter: 5/42: loss:7.031: rank:-1 +num_clicks 50 points_length: 2513 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(182) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.024131668731570244 and after 0.003409306053072214 +num_clicks 50 points_length: 28136 dynamic_size: 27 +filter out voxels: 2671 +filter out voxels: 19274 +First batch: fn: 0.9962, fp: 0.1203, label 0: tensor(142), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01612110435962677 and after 0.003115240950137377 +num_clicks 50 points_length: 12606 dynamic_size: 44 +filter out voxels: 2206 +filter out voxels: 7396 +First batch: fn: 0.9966, fp: 0.0746, label 0: tensor(9), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01480009313672781 and after 0.0031266945879906416 +num_clicks 50 points_length: 13220 dynamic_size: 42 +filter out voxels: 2115 +filter out voxels: 7723 +First batch: fn: 0.9966, fp: 0.0720, label 0: tensor(30), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01645664870738983 and after 0.00293759535998106 +num_clicks 50 points_length: 12617 dynamic_size: 35 +filter out voxels: 2112 +filter out voxels: 7407 +First batch: fn: 0.9969, fp: 0.0668, label 0: tensor(1), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.020232584327459335 and after 0.0035880599170923233 +num_clicks 50 points_length: 14576 dynamic_size: 22 +filter out voxels: 2098 +filter out voxels: 8737 +First batch: fn: 0.9962, fp: 0.0681, label 0: tensor(27), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.014914963394403458 and after 0.00342216482385993 +num_clicks 50 points_length: 14231 dynamic_size: 28 +filter out voxels: 2373 +filter out voxels: 8667 +First batch: fn: 0.9963, fp: 0.0815, label 0: tensor(8), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.018147269263863564 and after 0.004430621396750212 +num_clicks 50 points_length: 12120 dynamic_size: 22 +filter out voxels: 2253 +filter out voxels: 7262 +First batch: fn: 0.9952, fp: 0.0882, label 0: tensor(1), label 1: tensor(460) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.018797658383846283 and after 0.004630159121006727 +num_clicks 50 points_length: 12029 dynamic_size: 21 +filter out voxels: 2046 +filter out voxels: 7244 +First batch: fn: 0.9950, fp: 0.0793, label 0: tensor(3), label 1: tensor(402) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.02353217825293541 and after 0.005035897716879845 +num_clicks 50 points_length: 14137 dynamic_size: 27 +filter out voxels: 2225 +filter out voxels: 8701 +First batch: fn: 0.9945, fp: 0.0884, label 0: tensor(48), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.019650882109999657 and after 0.0038403950165957212 +num_clicks 50 points_length: 13845 dynamic_size: 1 +filter out voxels: 2530 +filter out voxels: 8328 +First batch: fn: 0.9958, fp: 0.0813, label 0: tensor(69), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.017972273752093315 and after 0.0032442668452858925 +epoch: 0/20, iter: 6/42: loss:6.1888: rank:-1 +[21:24:43.030] epoch: 0/20, iter: 6/42: loss:6.1888: rank:-1 +num_clicks 50 points_length: 7916 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(258) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0014619810972362757 and after 9.941593452822417e-05 +num_clicks 50 points_length: 14389 dynamic_size: 42 +filter out voxels: 1093 +filter out voxels: 5804 +First batch: fn: 0.9999, fp: 0.3059, label 0: tensor(9), label 1: tensor(499) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011534024961292744 and after 0.0 +num_clicks 50 points_length: 11832 dynamic_size: 43 +filter out voxels: 1122 +filter out voxels: 3548 +First batch: fn: 1.0000, fp: 0.3168, label 0: tensor(17), label 1: tensor(414) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011937447125092149 and after 2.4685872631380334e-05 +num_clicks 50 points_length: 13383 dynamic_size: 4 +filter out voxels: 1137 +filter out voxels: 5009 +First batch: fn: 1.0000, fp: 0.3149, label 0: tensor(2), label 1: tensor(432) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0006877726991660893 and after 0.0 +num_clicks 50 points_length: 8215 dynamic_size: 45 +filter out voxels: 994 +filter out voxels: 299 +First batch: fn: 1.0000, fp: 0.2901, label 0: tensor(14), label 1: tensor(328) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001965322531759739 and after 0.00028692345949821174 +num_clicks 50 points_length: 14792 dynamic_size: 20 +filter out voxels: 1223 +filter out voxels: 6187 +First batch: fn: 0.9996, fp: 0.3571, label 0: tensor(4), label 1: tensor(468) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001428239862434566 and after 2.444330311845988e-05 +num_clicks 50 points_length: 11398 dynamic_size: 29 +filter out voxels: 1194 +filter out voxels: 3187 +First batch: fn: 1.0000, fp: 0.3279, label 0: tensor(11), label 1: tensor(433) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011825597612187266 and after 2.482375202816911e-05 +num_clicks 50 points_length: 12853 dynamic_size: 1 +filter out voxels: 1068 +filter out voxels: 4560 +First batch: fn: 1.0000, fp: 0.3075, label 0: tensor(0), label 1: tensor(394) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001344314543530345 and after 0.0 +num_clicks 50 points_length: 12900 dynamic_size: 41 +filter out voxels: 1129 +filter out voxels: 4604 +First batch: fn: 1.0000, fp: 0.3183, label 0: tensor(12), label 1: tensor(428) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0014920817920938134 and after 2.42359619733179e-05 +num_clicks 50 points_length: 12757 dynamic_size: 19 +filter out voxels: 1272 +filter out voxels: 4486 +First batch: fn: 1.0000, fp: 0.3393, label 0: tensor(6), label 1: tensor(386) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011198815191164613 and after 2.441644755890593e-05 +num_clicks 50 points_length: 12905 dynamic_size: 34 +filter out voxels: 1185 +filter out voxels: 4583 +First batch: fn: 1.0000, fp: 0.3294, label 0: tensor(8), label 1: tensor(451) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0009713934268802404 and after 2.4947610654635355e-05 +epoch: 0/20, iter: 7/42: loss:6.3632: rank:-1 +[21:25:00.700] epoch: 0/20, iter: 7/42: loss:6.3632: rank:-1 +num_clicks 50 points_length: 5139 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(469) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0003285978746134788 and after 0.0 +num_clicks 50 points_length: 15730 dynamic_size: 21 +filter out voxels: 2793 +filter out voxels: 10422 +First batch: fn: 1.0000, fp: 0.0818, label 0: tensor(64), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 7.04701742506586e-05 and after 0.0 +num_clicks 50 points_length: 12156 dynamic_size: 20 +filter out voxels: 2181 +filter out voxels: 6957 +First batch: fn: 1.0000, fp: 0.0606, label 0: tensor(1), label 1: tensor(441) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00016084712115116417 and after 0.0 +num_clicks 50 points_length: 13111 dynamic_size: 11 +filter out voxels: 1811 +filter out voxels: 7927 +First batch: fn: 1.0000, fp: 0.0520, label 0: tensor(26), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 9.644928650232032e-05 and after 0.0 +num_clicks 50 points_length: 13301 dynamic_size: 9 +filter out voxels: 2006 +filter out voxels: 8112 +First batch: fn: 1.0000, fp: 0.0560, label 0: tensor(0), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00012276465713512152 and after 0.0 +num_clicks 50 points_length: 12536 dynamic_size: 34 +filter out voxels: 1826 +filter out voxels: 7359 +First batch: fn: 1.0000, fp: 0.0527, label 0: tensor(1), label 1: tensor(491) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00033241917844861746 and after 4.344237459008582e-05 +num_clicks 50 points_length: 13283 dynamic_size: 45 +filter out voxels: 2535 +filter out voxels: 8103 +First batch: fn: 1.0000, fp: 0.0715, label 0: tensor(3), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001219313926412724 and after 1.4701558029628359e-05 +num_clicks 50 points_length: 13422 dynamic_size: 37 +filter out voxels: 1936 +filter out voxels: 8235 +First batch: fn: 1.0000, fp: 0.0554, label 0: tensor(1), label 1: tensor(396) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00014649868535343558 and after 0.0 +num_clicks 50 points_length: 13188 dynamic_size: 27 +filter out voxels: 1976 +filter out voxels: 8017 +First batch: fn: 1.0000, fp: 0.0552, label 0: tensor(0), label 1: tensor(497) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.000136156304506585 and after 2.9452045055222698e-05 +num_clicks 50 points_length: 13404 dynamic_size: 9 +filter out voxels: 1857 +filter out voxels: 8224 +First batch: fn: 1.0000, fp: 0.0537, label 0: tensor(1), label 1: tensor(476) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00010960105282720178 and after 5.900662290514447e-05 +num_clicks 50 points_length: 12492 dynamic_size: 7 +filter out voxels: 1825 +filter out voxels: 7311 +First batch: fn: 0.9999, fp: 0.0518, label 0: tensor(1), label 1: tensor(455) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0003245387342758477 and after 0.00011622669990174472 +epoch: 0/20, iter: 8/42: loss:6.112: rank:-1 +[21:25:18.184] epoch: 0/20, iter: 8/42: loss:6.112: rank:-1 +num_clicks 50 points_length: 165762 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001569415908306837 and after 3.0261895517469384e-05 +num_clicks 50 points_length: 168462 dynamic_size: 23 +filter out voxels: 2348 +filter out voxels: 2304 +First batch: fn: 1.0000, fp: 0.0283, label 0: tensor(116), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001305590383708477 and after 1.736880039970856e-05 +num_clicks 50 points_length: 167921 dynamic_size: 27 +filter out voxels: 1894 +filter out voxels: 1758 +First batch: fn: 1.0000, fp: 0.0238, label 0: tensor(118), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0016640133690088987 and after 2.157404196623247e-05 +num_clicks 50 points_length: 167802 dynamic_size: 13 +filter out voxels: 2521 +filter out voxels: 1719 +First batch: fn: 1.0000, fp: 0.0302, label 0: tensor(112), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.003533422714099288 and after 4.283792804926634e-05 +num_clicks 50 points_length: 167644 dynamic_size: 48 +filter out voxels: 3177 +filter out voxels: 1576 +First batch: fn: 1.0000, fp: 0.0377, label 0: tensor(119), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001994808204472065 and after 3.0230399715946987e-05 +num_clicks 50 points_length: 167757 dynamic_size: 22 +filter out voxels: 2382 +filter out voxels: 1746 +First batch: fn: 1.0000, fp: 0.0293, label 0: tensor(119), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0035575046204030514 and after 3.4496588341426104e-05 +num_clicks 50 points_length: 167414 dynamic_size: 35 +filter out voxels: 2701 +filter out voxels: 1453 +First batch: fn: 1.0000, fp: 0.0309, label 0: tensor(108), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0026569736655801535 and after 2.1562318579526618e-05 +num_clicks 50 points_length: 167599 dynamic_size: 7 +filter out voxels: 2809 +filter out voxels: 1577 +First batch: fn: 1.0000, fp: 0.0308, label 0: tensor(115), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0029685862828046083 and after 4.7064662794582546e-05 +num_clicks 50 points_length: 167867 dynamic_size: 43 +filter out voxels: 3290 +filter out voxels: 1775 +First batch: fn: 1.0000, fp: 0.0389, label 0: tensor(136), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011531766504049301 and after 2.604505789349787e-05 +num_clicks 50 points_length: 167504 dynamic_size: 34 +filter out voxels: 2009 +filter out voxels: 1486 +First batch: fn: 1.0000, fp: 0.0241, label 0: tensor(96), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011900444515049458 and after 3.4763867006404325e-05 +num_clicks 50 points_length: 167864 dynamic_size: 37 +filter out voxels: 1846 +filter out voxels: 1866 +First batch: fn: 1.0000, fp: 0.0230, label 0: tensor(118), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0009628047700971365 and after 4.3366075260564685e-05 +epoch: 0/20, iter: 9/42: loss:4.7389: rank:-1 +[21:25:42.628] epoch: 0/20, iter: 9/42: loss:4.7389: rank:-1 +num_clicks 50 points_length: 374 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0022166247945278883 and after 0.0014599960995838046 +num_clicks 50 points_length: 1722 dynamic_size: 21 +filter out voxels: 7379 +filter out voxels: 1296 +First batch: fn: 0.9976, fp: 0.6327, label 0: tensor(10), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0010372877586632967 and after 0.0008798170019872487 +num_clicks 50 points_length: 1822 dynamic_size: 26 +filter out voxels: 4105 +filter out voxels: 1379 +First batch: fn: 0.9988, fp: 0.3555, label 0: tensor(7), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001217382145114243 and after 0.0014653302496299148 +num_clicks 50 points_length: 1841 dynamic_size: 41 +filter out voxels: 4137 +filter out voxels: 1394 +First batch: fn: 0.9980, fp: 0.3556, label 0: tensor(11), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012976642465218902 and after 0.0020020592492073774 +num_clicks 50 points_length: 1764 dynamic_size: 24 +filter out voxels: 4506 +filter out voxels: 1321 +First batch: fn: 0.9972, fp: 0.3883, label 0: tensor(6), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012095380807295442 and after 0.002421307610347867 +num_clicks 50 points_length: 1585 dynamic_size: 40 +filter out voxels: 3992 +filter out voxels: 1149 +First batch: fn: 0.9967, fp: 0.3442, label 0: tensor(11), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0017285681096836925 and after 0.0028105999808758497 +num_clicks 50 points_length: 1854 dynamic_size: 48 +filter out voxels: 4455 +filter out voxels: 1405 +First batch: fn: 0.9961, fp: 0.3834, label 0: tensor(11), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012778573436662555 and after 0.0030957944691181183 +num_clicks 50 points_length: 1857 dynamic_size: 45 +filter out voxels: 4146 +filter out voxels: 1410 +First batch: fn: 0.9958, fp: 0.3581, label 0: tensor(16), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0010774701368063688 and after 0.0027892382349818945 +num_clicks 50 points_length: 1873 dynamic_size: 26 +filter out voxels: 4223 +filter out voxels: 1425 +First batch: fn: 0.9962, fp: 0.3656, label 0: tensor(7), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012760055251419544 and after 0.00287981191650033 +num_clicks 50 points_length: 1836 dynamic_size: 23 +filter out voxels: 4068 +filter out voxels: 1386 +First batch: fn: 0.9961, fp: 0.3500, label 0: tensor(7), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0013094489695504308 and after 0.0031037714798003435 +num_clicks 50 points_length: 1812 dynamic_size: 35 +filter out voxels: 4088 +filter out voxels: 1368 +First batch: fn: 0.9958, fp: 0.3546, label 0: tensor(11), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0014069644967094064 and after 0.003257897449657321 +epoch: 0/20, iter: 10/42: loss:6.2234: rank:-1 +[21:25:52.590] epoch: 0/20, iter: 10/42: loss:6.2234: rank:-1 +num_clicks 50 points_length: 43955 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0016046303790062666 and after 0.0 +num_clicks 50 points_length: 44895 dynamic_size: 10 +filter out voxels: 519 +filter out voxels: 841 +First batch: fn: 1.0000, fp: 0.0027, label 0: tensor(48), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0017636214615777135 and after 0.0 +num_clicks 50 points_length: 44710 dynamic_size: 18 +filter out voxels: 466 +filter out voxels: 690 +First batch: fn: 1.0000, fp: 0.0025, label 0: tensor(32), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0019033204298466444 and after 0.0 +num_clicks 50 points_length: 44719 dynamic_size: 2 +filter out voxels: 368 +filter out voxels: 699 +First batch: fn: 1.0000, fp: 0.0019, label 0: tensor(24), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.002421212149783969 and after 0.0 +num_clicks 50 points_length: 44766 dynamic_size: 11 +filter out voxels: 428 +filter out voxels: 727 +First batch: fn: 1.0000, fp: 0.0023, label 0: tensor(44), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0019110662396997213 and after 4.3764252950495575e-06 +num_clicks 50 points_length: 44697 dynamic_size: 37 +filter out voxels: 387 +filter out voxels: 684 +First batch: fn: 1.0000, fp: 0.0020, label 0: tensor(32), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0023056434001773596 and after 8.7468406491098e-06 +num_clicks 50 points_length: 44792 dynamic_size: 36 +filter out voxels: 491 +filter out voxels: 751 +First batch: fn: 1.0000, fp: 0.0027, label 0: tensor(36), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0019645728170871735 and after 1.750547016854398e-05 +num_clicks 50 points_length: 44720 dynamic_size: 29 +filter out voxels: 387 +filter out voxels: 702 +First batch: fn: 1.0000, fp: 0.0020, label 0: tensor(38), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0016825234051793814 and after 2.1878679035580717e-05 +num_clicks 50 points_length: 44661 dynamic_size: 37 +filter out voxels: 409 +filter out voxels: 662 +First batch: fn: 1.0000, fp: 0.0022, label 0: tensor(32), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001763376989401877 and after 2.188135840697214e-05 +num_clicks 50 points_length: 44688 dynamic_size: 3 +filter out voxels: 389 +filter out voxels: 680 +First batch: fn: 1.0000, fp: 0.0021, label 0: tensor(31), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0018159577157348394 and after 5.689153476851061e-05 +num_clicks 50 points_length: 44686 dynamic_size: 47 +filter out voxels: 379 +filter out voxels: 681 +First batch: fn: 0.9999, fp: 0.0020, label 0: tensor(29), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001788583816960454 and after 5.687958764610812e-05 +epoch: 0/20, iter: 11/42: loss:4.9788: rank:-1 +[21:26:13.378] epoch: 0/20, iter: 11/42: loss:4.9788: rank:-1 +num_clicks 50 points_length: 51608 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0013516300823539495 and after 7.203852146631107e-05 +num_clicks 50 points_length: 52249 dynamic_size: 29 +filter out voxels: 14 +filter out voxels: 279 +First batch: fn: 0.9999, fp: 0.0009, label 0: tensor(70), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00011640927550615743 and after 0.0 +num_clicks 50 points_length: 52048 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 174 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00015516419080086052 and after 0.0 +num_clicks 50 points_length: 52789 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 507 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012475240509957075 and after 6.651700095972046e-05 +num_clicks 50 points_length: 51963 dynamic_size: 49 +filter out voxels: 11 +filter out voxels: 140 +First batch: fn: 0.9999, fp: 0.0006, label 0: tensor(61), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012612047139555216 and after 8.307119423989207e-05 +num_clicks 50 points_length: 52198 dynamic_size: 2 +filter out voxels: 16 +filter out voxels: 254 +First batch: fn: 0.9999, fp: 0.0015, label 0: tensor(86), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.000968986947555095 and after 6.648310227319598e-05 +num_clicks 50 points_length: 52138 dynamic_size: 30 +filter out voxels: 10 +filter out voxels: 213 +First batch: fn: 0.9999, fp: 0.0011, label 0: tensor(67), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001175419078208506 and after 0.00010521536023588851 +num_clicks 50 points_length: 51989 dynamic_size: 24 +filter out voxels: 12 +filter out voxels: 145 +First batch: fn: 0.9999, fp: 0.0016, label 0: tensor(65), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00011640152661129832 and after 0.0 +num_clicks 50 points_length: 52264 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 270 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0016153237083926797 and after 9.975725697586313e-05 +num_clicks 50 points_length: 52203 dynamic_size: 40 +filter out voxels: 13 +filter out voxels: 244 +First batch: fn: 0.9999, fp: 0.0008, label 0: tensor(56), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0009562214254401624 and after 8.866918506100774e-05 +num_clicks 50 points_length: 51941 dynamic_size: 17 +filter out voxels: 12 +filter out voxels: 128 +First batch: fn: 0.9999, fp: 0.0008, label 0: tensor(53), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0014595095999538898 and after 7.206647569546476e-05 +epoch: 0/20, iter: 12/42: loss:4.7268: rank:-1 +[21:26:34.633] epoch: 0/20, iter: 12/42: loss:4.7268: rank:-1 +num_clicks 50 points_length: 2342 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(232) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2506 dynamic_size: 35 +filter out voxels: 254 +filter out voxels: 158 +First batch: fn: 1.0000, fp: 0.0243, label 0: tensor(1), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2458 dynamic_size: 39 +filter out voxels: 192 +filter out voxels: 115 +First batch: fn: 1.0000, fp: 0.0184, label 0: tensor(0), label 1: tensor(222) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2457 dynamic_size: 48 +filter out voxels: 199 +filter out voxels: 114 +First batch: fn: 1.0000, fp: 0.0190, label 0: tensor(0), label 1: tensor(209) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2453 dynamic_size: 14 +filter out voxels: 222 +filter out voxels: 110 +First batch: fn: 1.0000, fp: 0.0213, label 0: tensor(0), label 1: tensor(236) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2464 dynamic_size: 37 +filter out voxels: 219 +filter out voxels: 120 +First batch: fn: 1.0000, fp: 0.0210, label 0: tensor(0), label 1: tensor(239) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2457 dynamic_size: 32 +filter out voxels: 218 +filter out voxels: 114 +First batch: fn: 1.0000, fp: 0.0208, label 0: tensor(0), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2462 dynamic_size: 46 +filter out voxels: 239 +filter out voxels: 117 +First batch: fn: 1.0000, fp: 0.0229, label 0: tensor(1), label 1: tensor(248) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2453 dynamic_size: 21 +filter out voxels: 226 +filter out voxels: 110 +First batch: fn: 1.0000, fp: 0.0216, label 0: tensor(0), label 1: tensor(281) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2458 dynamic_size: 7 +filter out voxels: 210 +filter out voxels: 114 +First batch: fn: 1.0000, fp: 0.0202, label 0: tensor(0), label 1: tensor(216) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2457 dynamic_size: 23 +filter out voxels: 185 +filter out voxels: 114 +First batch: fn: 1.0000, fp: 0.0177, label 0: tensor(0), label 1: tensor(215) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 13/42: loss:5.7346: rank:-1 +[21:26:46.208] epoch: 0/20, iter: 13/42: loss:5.7346: rank:-1 +num_clicks 50 points_length: 2332 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(234) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0008337526232935488 and after 0.00030637255986221135 +num_clicks 50 points_length: 2341 dynamic_size: 10 +filter out voxels: 9 +filter out voxels: 46 +First batch: fn: 1.0000, fp: 0.0039, label 0: tensor(0), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00046347256284207106 and after 0.00020436463819351047 +num_clicks 50 points_length: 2338 dynamic_size: 39 +filter out voxels: 6 +filter out voxels: 32 +First batch: fn: 1.0000, fp: 0.0026, label 0: tensor(0), label 1: tensor(283) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004636068479157984 and after 0.00018977824947796762 +num_clicks 50 points_length: 2338 dynamic_size: 7 +filter out voxels: 6 +filter out voxels: 30 +First batch: fn: 1.0000, fp: 0.0026, label 0: tensor(0), label 1: tensor(195) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0005784358945675194 and after 0.0002627315407153219 +num_clicks 50 points_length: 2338 dynamic_size: 46 +filter out voxels: 6 +filter out voxels: 29 +First batch: fn: 1.0000, fp: 0.0026, label 0: tensor(0), label 1: tensor(256) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004637009114958346 and after 0.00018979488231707364 +num_clicks 50 points_length: 2338 dynamic_size: 14 +filter out voxels: 6 +filter out voxels: 28 +First batch: fn: 1.0000, fp: 0.0026, label 0: tensor(0), label 1: tensor(234) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.000463674048660323 and after 0.0001897727051982656 +num_clicks 50 points_length: 2340 dynamic_size: 11 +filter out voxels: 8 +filter out voxels: 32 +First batch: fn: 1.0000, fp: 0.0034, label 0: tensor(0), label 1: tensor(227) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0006216208566911519 and after 0.00023355278244707733 +num_clicks 50 points_length: 2338 dynamic_size: 34 +filter out voxels: 6 +filter out voxels: 31 +First batch: fn: 1.0000, fp: 0.0026, label 0: tensor(0), label 1: tensor(308) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0008076961967162788 and after 0.0003211069561075419 +num_clicks 50 points_length: 2339 dynamic_size: 49 +filter out voxels: 7 +filter out voxels: 28 +First batch: fn: 1.0000, fp: 0.0030, label 0: tensor(0), label 1: tensor(299) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0006359484395943582 and after 0.0002481462142895907 +num_clicks 50 points_length: 2338 dynamic_size: 31 +filter out voxels: 6 +filter out voxels: 29 +First batch: fn: 1.0000, fp: 0.0026, label 0: tensor(0), label 1: tensor(246) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0006222325027920306 and after 0.0002481462142895907 +num_clicks 50 points_length: 2338 dynamic_size: 6 +filter out voxels: 6 +filter out voxels: 30 +First batch: fn: 1.0000, fp: 0.0026, label 0: tensor(0), label 1: tensor(170) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0005931798950769007 and after 0.00021894933888688684 +epoch: 0/20, iter: 14/42: loss:5.0716: rank:-1 +[21:26:58.717] epoch: 0/20, iter: 14/42: loss:5.0716: rank:-1 +num_clicks 50 points_length: 2080 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(328) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0018086887430399656 and after 0.0 +num_clicks 50 points_length: 2154 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 74 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(298) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0005017072544433177 and after 0.0 +num_clicks 50 points_length: 2142 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 62 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(257) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.000510292302351445 and after 0.0 +num_clicks 50 points_length: 2141 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 61 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(227) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011619769502431154 and after 0.0 +num_clicks 50 points_length: 2092 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 12 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(224) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012230293359607458 and after 0.0 +num_clicks 50 points_length: 2141 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 61 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(171) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0013456996530294418 and after 0.0 +num_clicks 50 points_length: 2100 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 20 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(204) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00122840388212353 and after 0.0 +num_clicks 50 points_length: 2101 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 21 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(271) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012121691834181547 and after 0.0 +num_clicks 50 points_length: 2143 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 63 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(247) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0009656340116634965 and after 0.0 +num_clicks 50 points_length: 2094 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 14 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(320) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0015201305504888296 and after 0.0 +num_clicks 50 points_length: 2146 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 66 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(208) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0013765799812972546 and after 0.0 +epoch: 0/20, iter: 15/42: loss:5.0755: rank:-1 +[21:27:11.747] epoch: 0/20, iter: 15/42: loss:5.0755: rank:-1 +num_clicks 50 points_length: 522 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 522 dynamic_size: 37 +filter out voxels: 8 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0072, label 0: tensor(0), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 537 dynamic_size: 13 +filter out voxels: 2 +filter out voxels: 15 +First batch: fn: 1.0000, fp: 0.0015, label 0: tensor(0), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 522 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 522 dynamic_size: 33 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0026, label 0: tensor(0), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 522 dynamic_size: 25 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0026, label 0: tensor(0), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 522 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 522 dynamic_size: 36 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0026, label 0: tensor(0), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 537 dynamic_size: 23 +filter out voxels: 2 +filter out voxels: 15 +First batch: fn: 1.0000, fp: 0.0021, label 0: tensor(0), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 522 dynamic_size: 12 +filter out voxels: 3 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0031, label 0: tensor(0), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 538 dynamic_size: 8 +filter out voxels: 2 +filter out voxels: 16 +First batch: fn: 1.0000, fp: 0.0015, label 0: tensor(0), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 16/42: loss:5.651: rank:-1 +[21:27:20.210] epoch: 0/20, iter: 16/42: loss:5.651: rank:-1 +num_clicks 50 points_length: 4920 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(293) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 8.257979061454535e-05 and after 0.0 +num_clicks 50 points_length: 4924 dynamic_size: 46 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0008, label 0: tensor(0), label 1: tensor(419) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0007371007231995463 and after 0.00020300447067711502 +num_clicks 50 points_length: 4924 dynamic_size: 25 +filter out voxels: 5 +filter out voxels: 0 +First batch: fn: 0.9998, fp: 0.0010, label 0: tensor(0), label 1: tensor(260) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.131036621402018e-05 and after 0.0 +num_clicks 50 points_length: 4954 dynamic_size: 5 +filter out voxels: 34 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0069, label 0: tensor(0), label 1: tensor(359) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0006565449293702841 and after 0.0 +num_clicks 50 points_length: 4925 dynamic_size: 45 +filter out voxels: 5 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0010, label 0: tensor(0), label 1: tensor(409) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0006155866431072354 and after 0.0022289766930043697 +num_clicks 50 points_length: 4913 dynamic_size: 43 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.9978, fp: 0.0008, label 0: tensor(0), label 1: tensor(351) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00065659882966429 and after 0.0 +num_clicks 50 points_length: 4950 dynamic_size: 20 +filter out voxels: 30 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0061, label 0: tensor(0), label 1: tensor(305) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.130695015192032e-05 and after 0.0008067769231274724 +num_clicks 50 points_length: 4950 dynamic_size: 33 +filter out voxels: 34 +filter out voxels: 0 +First batch: fn: 0.9992, fp: 0.0069, label 0: tensor(0), label 1: tensor(364) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.1295010305475444e-05 and after 0.00243111839517951 +num_clicks 50 points_length: 4912 dynamic_size: 42 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.9976, fp: 0.0008, label 0: tensor(0), label 1: tensor(342) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.13052475778386e-05 and after 0.0 +num_clicks 50 points_length: 4952 dynamic_size: 20 +filter out voxels: 32 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0065, label 0: tensor(0), label 1: tensor(421) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0005751139833591878 and after 0.002026753034442663 +num_clicks 50 points_length: 4914 dynamic_size: 48 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.9980, fp: 0.0008, label 0: tensor(0), label 1: tensor(401) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00012385945592541248 and after 0.0 +epoch: 0/20, iter: 17/42: loss:4.9922: rank:-1 +[21:27:34.132] epoch: 0/20, iter: 17/42: loss:4.9922: rank:-1 +num_clicks 50 points_length: 21093 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00015780316607560962 and after 0.0 +num_clicks 50 points_length: 21093 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00013120514631737024 and after 0.0 +num_clicks 50 points_length: 21093 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00013343097816687077 and after 0.0 +num_clicks 50 points_length: 21093 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00010877621389226988 and after 0.0 +num_clicks 50 points_length: 21093 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00014776669559068978 and after 0.0 +num_clicks 50 points_length: 21093 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00013339653378352523 and after 0.0 +num_clicks 50 points_length: 21093 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001087757118511945 and after 0.0 +num_clicks 50 points_length: 21093 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00010466242383699864 and after 0.0 +num_clicks 50 points_length: 21093 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001272342196898535 and after 0.0 +num_clicks 50 points_length: 21093 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00014151688083074987 and after 0.0 +num_clicks 50 points_length: 21093 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00014970792108215392 and after 0.0 +epoch: 0/20, iter: 18/42: loss:4.3757: rank:-1 +[21:27:56.642] epoch: 0/20, iter: 18/42: loss:4.3757: rank:-1 +num_clicks 50 points_length: 124 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 124 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 3.108389500994235e-05 and after 0.0 +num_clicks 50 points_length: 124 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 3.1080515327630565e-05 and after 0.0 +num_clicks 50 points_length: 124 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.5549923773505725e-05 and after 0.0 +num_clicks 50 points_length: 124 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.661135608330369e-05 and after 0.0 +num_clicks 50 points_length: 124 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.555282506160438e-05 and after 0.0 +num_clicks 50 points_length: 124 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 3.107134034507908e-05 and after 0.0 +num_clicks 50 points_length: 124 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 3.107375232502818e-05 and after 0.0 +num_clicks 50 points_length: 124 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 124 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.5548472219961695e-05 and after 0.0 +num_clicks 50 points_length: 124 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 3.106747681158595e-05 and after 0.0 +epoch: 0/20, iter: 19/42: loss:4.6099: rank:-1 +[21:28:06.599] epoch: 0/20, iter: 19/42: loss:4.6099: rank:-1 +num_clicks 50 points_length: 2697 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2697 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(241) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2697 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2697 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2697 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2697 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(192) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2697 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(218) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2697 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2697 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(192) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2697 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(226) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2697 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(171) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 20/42: loss:5.1981: rank:-1 +[21:28:17.337] epoch: 0/20, iter: 20/42: loss:5.1981: rank:-1 +num_clicks 50 points_length: 680 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002875491336453706 and after 0.0 +num_clicks 50 points_length: 680 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011497832601889968 and after 0.0 +num_clicks 50 points_length: 680 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0003353293286636472 and after 0.0 +num_clicks 50 points_length: 680 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00035941056557931006 and after 0.0 +num_clicks 50 points_length: 680 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(172) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0003831693029496819 and after 0.0 +num_clicks 50 points_length: 680 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011738494504243135 and after 0.0 +num_clicks 50 points_length: 680 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0003592986613512039 and after 0.0 +num_clicks 50 points_length: 680 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00035930724698118865 and after 0.0 +num_clicks 50 points_length: 680 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(138) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0003832060028798878 and after 0.0 +num_clicks 50 points_length: 680 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012930105440318584 and after 0.0 +num_clicks 50 points_length: 680 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0016274561639875174 and after 0.0 +epoch: 0/20, iter: 21/42: loss:4.4029: rank:-1 +[21:28:27.542] epoch: 0/20, iter: 21/42: loss:4.4029: rank:-1 +num_clicks 50 points_length: 11329 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(435) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 9.438414417672902e-05 and after 0.0 +num_clicks 50 points_length: 11329 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(496) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.7163135604932904e-05 and after 0.0 +num_clicks 50 points_length: 11329 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(442) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002357823250349611 and after 0.0 +num_clicks 50 points_length: 11329 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(405) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002357156336074695 and after 0.0 +num_clicks 50 points_length: 11329 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001414760627085343 and after 0.0 +num_clicks 50 points_length: 11329 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(406) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001414760627085343 and after 0.0002647370274644345 +num_clicks 50 points_length: 11326 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.716981129604392e-05 and after 0.0002647370274644345 +num_clicks 50 points_length: 11326 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(437) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002357489720452577 and after 0.0005293339490890503 +num_clicks 50 points_length: 11323 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(455) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001414560538250953 and after 0.0006175017915666103 +num_clicks 50 points_length: 11322 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(414) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.7163135604932904e-05 and after 0.0007056540343910456 +num_clicks 50 points_length: 11321 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001885991805465892 and after 0.0006175017915666103 +epoch: 0/20, iter: 22/42: loss:4.8197: rank:-1 +[21:28:43.183] epoch: 0/20, iter: 22/42: loss:4.8197: rank:-1 +num_clicks 50 points_length: 2413 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(187) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2413 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(307) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2413 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(251) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2413 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(269) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2413 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(287) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2413 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(229) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2413 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(302) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2413 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(274) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2413 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(302) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2413 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(276) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2413 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(218) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 23/42: loss:4.6227: rank:-1 +[21:28:55.749] epoch: 0/20, iter: 23/42: loss:4.6227: rank:-1 +num_clicks 50 points_length: 3919 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(318) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.0513635970710311e-05 and after 0.0 +num_clicks 50 points_length: 3919 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(287) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.9524972231010906e-05 and after 0.0 +num_clicks 50 points_length: 3919 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(383) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.0513635970710311e-05 and after 0.0 +num_clicks 50 points_length: 3919 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(253) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.0513635970710311e-05 and after 0.0 +num_clicks 50 points_length: 3919 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(400) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.0513620509300381e-05 and after 0.0 +num_clicks 50 points_length: 3919 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(246) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 9.011715519591235e-06 and after 0.0 +num_clicks 50 points_length: 3919 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(284) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.2015566426271107e-05 and after 0.0 +num_clicks 50 points_length: 3919 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(325) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.0513652341614943e-05 and after 0.0 +num_clicks 50 points_length: 3919 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(361) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.5019322745501995e-05 and after 0.0 +num_clicks 50 points_length: 3919 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(361) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.0513635970710311e-05 and after 0.0 +num_clicks 50 points_length: 3919 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(332) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 1.2015493666694965e-05 and after 0.0 +epoch: 0/20, iter: 24/42: loss:5.8971: rank:-1 +[21:29:16.619] epoch: 0/20, iter: 24/42: loss:5.8971: rank:-1 +num_clicks 50 points_length: 6417 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(303) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.000674991577398032 and after 0.0 +num_clicks 50 points_length: 6417 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(316) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0008769562700763345 and after 0.0 +num_clicks 50 points_length: 6417 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(302) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0005401025991886854 and after 0.0 +num_clicks 50 points_length: 6417 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(296) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00054017553338781 and after 0.0 +num_clicks 50 points_length: 6417 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(305) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0008768379921093583 and after 0.0 +num_clicks 50 points_length: 6417 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(317) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0006748549058102071 and after 0.0 +num_clicks 50 points_length: 6417 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(299) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0006748549058102071 and after 0.0 +num_clicks 50 points_length: 6417 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(346) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00054017553338781 and after 0.0 +num_clicks 50 points_length: 6417 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(364) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0007421901100315154 and after 0.0 +num_clicks 50 points_length: 6417 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(333) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0005400661611929536 and after 0.0 +num_clicks 50 points_length: 6417 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(396) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0005401390953920782 and after 0.0 +epoch: 0/20, iter: 25/42: loss:4.6182: rank:-1 +[21:29:30.665] epoch: 0/20, iter: 25/42: loss:4.6182: rank:-1 +num_clicks 50 points_length: 572 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 572 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 572 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 572 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 572 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 572 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 572 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 572 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 572 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 572 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 572 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 26/42: loss:6.1467: rank:-1 +[21:29:43.851] epoch: 0/20, iter: 26/42: loss:6.1467: rank:-1 +num_clicks 50 points_length: 4539 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(202) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 4539 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 3 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(227) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 4539 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(211) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 4539 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(213) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 4539 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(209) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 4539 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(169) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 4539 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 4539 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(203) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 4539 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(164) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 4539 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(186) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 4539 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(201) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 27/42: loss:5.0781: rank:-1 +[21:29:55.073] epoch: 0/20, iter: 27/42: loss:5.0781: rank:-1 +num_clicks 50 points_length: 2532 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(182) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2532 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2532 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(225) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2532 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(194) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2532 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(247) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2532 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(249) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2532 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(227) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2532 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(279) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2532 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(227) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2532 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(260) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 2532 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 28/42: loss:4.4742: rank:-1 +[21:30:09.642] epoch: 0/20, iter: 28/42: loss:4.4742: rank:-1 +num_clicks 50 points_length: 17182 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 17182 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 17182 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0002327475813217461 +num_clicks 50 points_length: 17178 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0009303407277911901 +num_clicks 50 points_length: 17166 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0015689465217292309 +num_clicks 50 points_length: 17155 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.002727958606556058 +num_clicks 50 points_length: 17135 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.00423065759241581 +num_clicks 50 points_length: 17109 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.004346062429249287 +num_clicks 50 points_length: 17107 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0077958074398338795 +num_clicks 50 points_length: 17047 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0062463851645588875 +num_clicks 50 points_length: 17074 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.007623888086527586 +epoch: 0/20, iter: 29/42: loss:3.9636: rank:-1 +[21:30:25.838] epoch: 0/20, iter: 29/42: loss:3.9636: rank:-1 +num_clicks 50 points_length: 68197 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 2.3587559553561732e-05 and after 0.0 +num_clicks 50 points_length: 68197 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(465) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 2.2311169232125394e-05 and after 0.0 +num_clicks 50 points_length: 68197 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 2.2311169232125394e-05 and after 0.0 +num_clicks 50 points_length: 68197 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 2.2311169232125394e-05 and after 0.0 +num_clicks 50 points_length: 68197 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 2.2311169232125394e-05 and after 2.932594361482188e-05 +num_clicks 50 points_length: 68195 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 3.697413922054693e-05 and after 0.00011729345715139061 +num_clicks 50 points_length: 68189 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9999, fp: 0.0000, label 0: tensor(0), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 2.2311169232125394e-05 and after 1.4663186448160559e-05 +num_clicks 50 points_length: 68196 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 2.2311169232125394e-05 and after 0.0 +num_clicks 50 points_length: 68197 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 2.2311169232125394e-05 and after 8.797267219051719e-05 +num_clicks 50 points_length: 68191 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9999, fp: 0.0000, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 2.2311169232125394e-05 and after 0.00036645069485530257 +num_clicks 50 points_length: 68172 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9996, fp: 0.0000, label 0: tensor(0), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 2.2311169232125394e-05 and after 0.0005422516842372715 +epoch: 0/20, iter: 30/42: loss:4.2852: rank:-1 +[21:30:45.929] epoch: 0/20, iter: 30/42: loss:4.2852: rank:-1 +num_clicks 50 points_length: 414 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 422 dynamic_size: 26 +filter out voxels: 8 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0193, label 0: tensor(0), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 419 dynamic_size: 44 +filter out voxels: 5 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0121, label 0: tensor(0), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 419 dynamic_size: 21 +filter out voxels: 5 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0121, label 0: tensor(0), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 418 dynamic_size: 21 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0097, label 0: tensor(0), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 420 dynamic_size: 50 +filter out voxels: 6 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0145, label 0: tensor(0), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 418 dynamic_size: 6 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0097, label 0: tensor(0), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 419 dynamic_size: 10 +filter out voxels: 5 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0121, label 0: tensor(0), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 419 dynamic_size: 35 +filter out voxels: 5 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0121, label 0: tensor(0), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 421 dynamic_size: 35 +filter out voxels: 7 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0169, label 0: tensor(0), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 419 dynamic_size: 38 +filter out voxels: 5 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0121, label 0: tensor(1), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 31/42: loss:4.735: rank:-1 +[21:30:55.183] epoch: 0/20, iter: 31/42: loss:4.735: rank:-1 +num_clicks 50 points_length: 420 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 420 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 420 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 420 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 420 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 420 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 420 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 420 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 420 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 420 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 420 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 32/42: loss:4.3038: rank:-1 +[21:31:04.985] epoch: 0/20, iter: 32/42: loss:4.3038: rank:-1 +num_clicks 50 points_length: 3629 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(211) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 3629 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(185) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 3629 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(186) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 3629 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(197) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 3629 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 3629 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 3629 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 3629 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 3629 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 3629 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 3629 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(183) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 33/42: loss:4.6351: rank:-1 +[21:31:17.986] epoch: 0/20, iter: 33/42: loss:4.6351: rank:-1 +num_clicks 50 points_length: 175517 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.587134753819555e-06 and after 0.012040122412145138 +num_clicks 50 points_length: 173378 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9878, fp: 0.0000, label 0: tensor(0), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.008356121368706226 +num_clicks 50 points_length: 174038 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9916, fp: 0.0000, label 0: tensor(0), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.587134753819555e-06 and after 0.020809274166822433 +num_clicks 50 points_length: 171787 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9787, fp: 0.0000, label 0: tensor(0), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.587134753819555e-06 and after 0.009274102747440338 +num_clicks 50 points_length: 173874 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9906, fp: 0.0000, label 0: tensor(0), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.587134753819555e-06 and after 0.021371619775891304 +num_clicks 50 points_length: 171684 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9782, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.587134753819555e-06 and after 0.020623503252863884 +num_clicks 50 points_length: 171821 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9789, fp: 0.0000, label 0: tensor(0), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.587134753819555e-06 and after 0.022777382284402847 +num_clicks 50 points_length: 171426 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9767, fp: 0.0000, label 0: tensor(0), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.587134753819555e-06 and after 0.014857097528874874 +num_clicks 50 points_length: 172870 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9849, fp: 0.0000, label 0: tensor(0), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 9.174227670882829e-06 and after 0.024005470797419548 +num_clicks 50 points_length: 171200 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9754, fp: 0.0000, label 0: tensor(0), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.012801404111087322 +num_clicks 50 points_length: 173241 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9870, fp: 0.0000, label 0: tensor(0), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.587134753819555e-06 and after 0.018789341673254967 +epoch: 0/20, iter: 34/42: loss:3.0373: rank:-1 +[21:31:39.623] epoch: 0/20, iter: 34/42: loss:3.0373: rank:-1 +num_clicks 50 points_length: 440 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 440 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 440 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 440 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 440 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 440 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 440 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 440 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 440 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 440 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 440 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 35/42: loss:4.745: rank:-1 +[21:31:55.949] epoch: 0/20, iter: 35/42: loss:4.745: rank:-1 +num_clicks 50 points_length: 506 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 774 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 28 +First batch: fn: 1.0000, fp: 0.5296, label 0: tensor(52), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 751 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 24 +First batch: fn: 1.0000, fp: 0.4842, label 0: tensor(57), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 722 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 44 +First batch: fn: 1.0000, fp: 0.4269, label 0: tensor(57), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 717 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 26 +First batch: fn: 1.0000, fp: 0.4170, label 0: tensor(42), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 704 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 30 +First batch: fn: 1.0000, fp: 0.3913, label 0: tensor(51), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 714 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 25 +First batch: fn: 1.0000, fp: 0.4111, label 0: tensor(68), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 691 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 27 +First batch: fn: 1.0000, fp: 0.3656, label 0: tensor(55), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 699 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 24 +First batch: fn: 1.0000, fp: 0.3814, label 0: tensor(54), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 694 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 55 +First batch: fn: 1.0000, fp: 0.3715, label 0: tensor(41), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +num_clicks 50 points_length: 678 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 36 +First batch: fn: 1.0000, fp: 0.3399, label 0: tensor(41), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0 +epoch: 0/20, iter: 36/42: loss:4.023: rank:-1 +[21:32:06.577] epoch: 0/20, iter: 36/42: loss:4.023: rank:-1 +num_clicks 50 points_length: 6489 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.008125729858875275 +num_clicks 50 points_length: 9283 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 8885 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.010421409271657467 +num_clicks 50 points_length: 9283 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 8321 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.010959037579596043 +num_clicks 50 points_length: 9283 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 8822 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.011149791069328785 +num_clicks 50 points_length: 9283 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 8341 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.012109529227018356 +num_clicks 50 points_length: 9283 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 8605 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.011995967477560043 +num_clicks 50 points_length: 9283 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 8350 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.011511459946632385 +num_clicks 50 points_length: 9283 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 8054 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(166) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.012282890267670155 +num_clicks 50 points_length: 9283 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 9022 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(181) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.012043776921927929 +num_clicks 50 points_length: 9283 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 7851 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.012424547225236893 +num_clicks 50 points_length: 9283 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 8357 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.012313232757151127 +epoch: 0/20, iter: 37/42: loss:4.4147: rank:-1 +[21:32:17.858] epoch: 0/20, iter: 37/42: loss:4.4147: rank:-1 +num_clicks 50 points_length: 131819 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00014242256293073297 and after 0.0897340178489685 +num_clicks 50 points_length: 120140 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 844 +First batch: fn: 0.9974, fp: 0.0000, label 0: tensor(0), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00018792744958773255 and after 0.10227881371974945 +num_clicks 50 points_length: 118526 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 966 +First batch: fn: 0.9956, fp: 0.0000, label 0: tensor(0), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00013742566807195544 and after 0.09862583130598068 +num_clicks 50 points_length: 119068 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 918 +First batch: fn: 0.9956, fp: 0.0000, label 0: tensor(0), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001779348822310567 and after 0.10823487490415573 +num_clicks 50 points_length: 117776 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 979 +First batch: fn: 0.9943, fp: 0.0000, label 0: tensor(0), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00020309482351876795 and after 0.11457739025354385 +num_clicks 50 points_length: 116905 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 991 +First batch: fn: 0.9932, fp: 0.0000, label 0: tensor(0), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002082700957544148 and after 0.11626828461885452 +num_clicks 50 points_length: 116682 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 1011 +First batch: fn: 0.9930, fp: 0.0000, label 0: tensor(0), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001653542130952701 and after 0.10985979437828064 +num_clicks 50 points_length: 117542 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 940 +First batch: fn: 0.9938, fp: 0.0000, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001801644393708557 and after 0.11496646702289581 +num_clicks 50 points_length: 116477 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 1004 +First batch: fn: 0.9955, fp: 0.0000, label 0: tensor(0), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00017035080236382782 and after 0.11211491376161575 +num_clicks 50 points_length: 117386 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 925 +First batch: fn: 0.9924, fp: 0.0000, label 0: tensor(0), label 1: tensor(550) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00020586168102454394 and after 0.12133319675922394 +num_clicks 50 points_length: 116049 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 982 +First batch: fn: 0.9915, fp: 0.0000, label 0: tensor(0), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00023601582506671548 and after 0.12453261017799377 +epoch: 0/20, iter: 38/42: loss:2.9668: rank:-1 +[21:32:39.968] epoch: 0/20, iter: 38/42: loss:2.9668: rank:-1 +num_clicks 50 points_length: 9628 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 8.679048914927989e-05 and after 0.014363298192620277 +num_clicks 50 points_length: 9561 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 869 +First batch: fn: 0.9930, fp: 0.0000, label 0: tensor(0), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00017356591706629843 and after 0.03155621886253357 +num_clicks 50 points_length: 9508 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 866 +First batch: fn: 0.9875, fp: 0.0000, label 0: tensor(0), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 8.679048914927989e-05 and after 0.03418288752436638 +num_clicks 50 points_length: 9492 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 818 +First batch: fn: 0.9859, fp: 0.0000, label 0: tensor(0), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00017356591706629843 and after 0.04546825960278511 +num_clicks 50 points_length: 9466 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 873 +First batch: fn: 0.9832, fp: 0.0000, label 0: tensor(0), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00017358097829855978 and after 0.04872720688581467 +num_clicks 50 points_length: 9484 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 817 +First batch: fn: 0.9850, fp: 0.0000, label 0: tensor(0), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 8.679048914927989e-05 and after 0.04773639887571335 +num_clicks 50 points_length: 9512 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 807 +First batch: fn: 0.9880, fp: 0.0000, label 0: tensor(0), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00017356591706629843 and after 0.052430763840675354 +num_clicks 50 points_length: 9487 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 838 +First batch: fn: 0.9854, fp: 0.0000, label 0: tensor(0), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 8.679801976541057e-05 and after 0.05220318213105202 +num_clicks 50 points_length: 9494 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 853 +First batch: fn: 0.9861, fp: 0.0000, label 0: tensor(0), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00017356591706629843 and after 0.04890710487961769 +num_clicks 50 points_length: 9512 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 819 +First batch: fn: 0.9880, fp: 0.0000, label 0: tensor(0), label 1: tensor(550) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 8.679801976541057e-05 and after 0.046809419989585876 +num_clicks 50 points_length: 9502 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 769 +First batch: fn: 0.9869, fp: 0.0000, label 0: tensor(0), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00017355085583403707 and after 0.047619275748729706 +epoch: 0/20, iter: 39/42: loss:3.9367: rank:-1 +[21:32:55.926] epoch: 0/20, iter: 39/42: loss:3.9367: rank:-1 +num_clicks 50 points_length: 55057 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0005524279549717903 and after 0.11970584839582443 +num_clicks 50 points_length: 50004 dynamic_size: 37 +filter out voxels: 43104 +filter out voxels: 1172 +First batch: fn: 1.0000, fp: 0.4245, label 0: tensor(287), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00033470484777353704 and after 0.11623889207839966 +num_clicks 50 points_length: 49760 dynamic_size: 28 +filter out voxels: 40754 +filter out voxels: 1040 +First batch: fn: 1.0000, fp: 0.3930, label 0: tensor(208), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0003709955490194261 and after 0.11549064517021179 +num_clicks 50 points_length: 49654 dynamic_size: 47 +filter out voxels: 40745 +filter out voxels: 1015 +First batch: fn: 1.0000, fp: 0.3905, label 0: tensor(181), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00040728674503043294 and after 0.12000061571598053 +num_clicks 50 points_length: 49311 dynamic_size: 10 +filter out voxels: 41247 +filter out voxels: 1045 +First batch: fn: 1.0000, fp: 0.3941, label 0: tensor(171), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.000461721298051998 and after 0.12330552935600281 +num_clicks 50 points_length: 49078 dynamic_size: 50 +filter out voxels: 41674 +filter out voxels: 1070 +First batch: fn: 1.0000, fp: 0.3984, label 0: tensor(181), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004072869196534157 and after 0.1251034438610077 +num_clicks 50 points_length: 48903 dynamic_size: 9 +filter out voxels: 41352 +filter out voxels: 1058 +First batch: fn: 1.0000, fp: 0.3921, label 0: tensor(152), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004617238009814173 and after 0.12677337229251862 +num_clicks 50 points_length: 48774 dynamic_size: 24 +filter out voxels: 41413 +filter out voxels: 1065 +First batch: fn: 1.0000, fp: 0.3924, label 0: tensor(161), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004435815499164164 and after 0.1267717033624649 +num_clicks 50 points_length: 48716 dynamic_size: 49 +filter out voxels: 40358 +filter out voxels: 1056 +First batch: fn: 1.0000, fp: 0.3769, label 0: tensor(170), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00040727489977143705 and after 0.13178007304668427 +num_clicks 50 points_length: 48309 dynamic_size: 27 +filter out voxels: 40422 +filter out voxels: 1057 +First batch: fn: 1.0000, fp: 0.3766, label 0: tensor(159), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00042543397285044193 and after 0.13415315747261047 +num_clicks 50 points_length: 48136 dynamic_size: 28 +filter out voxels: 40983 +filter out voxels: 1070 +First batch: fn: 1.0000, fp: 0.3824, label 0: tensor(162), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00038913320167921484 and after 0.1292743980884552 +epoch: 0/20, iter: 40/42: loss:4.0132: rank:-1 +[21:33:17.948] epoch: 0/20, iter: 40/42: loss:4.0132: rank:-1 +num_clicks 50 points_length: 3576 dynamic_size: 29 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(198) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011157600674778223 and after 0.12822966277599335 +num_clicks 50 points_length: 4555 dynamic_size: 15 +filter out voxels: 1314 +First batch: fn: 0.9063, fp: 0.3674, label 0: tensor(3), label 1: tensor(414) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011154490057379007 and after 0.15236999094486237 +num_clicks 50 points_length: 4417 dynamic_size: 18 +filter out voxels: 1238 +First batch: fn: 0.8890, fp: 0.3462, label 0: tensor(7), label 1: tensor(450) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011154490057379007 and after 0.16619020700454712 +num_clicks 50 points_length: 4375 dynamic_size: 18 +filter out voxels: 1235 +First batch: fn: 0.8781, fp: 0.3454, label 0: tensor(4), label 1: tensor(455) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011154490057379007 and after 0.19208402931690216 +num_clicks 50 points_length: 4307 dynamic_size: 8 +filter out voxels: 1243 +First batch: fn: 0.8568, fp: 0.3476, label 0: tensor(0), label 1: tensor(415) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011154490057379007 and after 0.20063516497612 +num_clicks 50 points_length: 4279 dynamic_size: 14 +filter out voxels: 1240 +First batch: fn: 0.8498, fp: 0.3468, label 0: tensor(5), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011154490057379007 and after 0.21087928116321564 +num_clicks 50 points_length: 4236 dynamic_size: 7 +filter out voxels: 1226 +First batch: fn: 0.8417, fp: 0.3428, label 0: tensor(2), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011154490057379007 and after 0.21826280653476715 +num_clicks 50 points_length: 4212 dynamic_size: 29 +filter out voxels: 1224 +First batch: fn: 0.8356, fp: 0.3423, label 0: tensor(13), label 1: tensor(484) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011154490057379007 and after 0.22403864562511444 +num_clicks 50 points_length: 4177 dynamic_size: 1 +filter out voxels: 1204 +First batch: fn: 0.8314, fp: 0.3367, label 0: tensor(0), label 1: tensor(450) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011154490057379007 and after 0.23067033290863037 +num_clicks 50 points_length: 4189 dynamic_size: 20 +filter out voxels: 1241 +First batch: fn: 0.8244, fp: 0.3470, label 0: tensor(4), label 1: tensor(467) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011154490057379007 and after 0.22830712795257568 +num_clicks 50 points_length: 4171 dynamic_size: 29 +filter out voxels: 1212 +First batch: fn: 0.8275, fp: 0.3389, label 0: tensor(7), label 1: tensor(355) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011154490057379007 and after 0.2294292002916336 +epoch: 0/20, iter: 41/42: loss:3.8788: rank:-1 +[21:33:25.484] epoch: 0/20, iter: 41/42: loss:3.8788: rank:-1 +current lr: 4e-05 +[21:33:25.485] - Train metrics: 5.188704 +found empty patch +found empty patch +num_clicks 10 points_length: 2119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(195) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:33:29.455] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(195, device='cuda:0') +num_clicks 10 points_length: 13318 dynamic_size: 10 +filter out voxels: 11199 +First batch: fn: 1.0000, fp: 5.2850, label 0: tensor(8), label 1: tensor(138) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12832 dynamic_size: 10 +filter out voxels: 10713 +First batch: fn: 1.0000, fp: 5.0557, label 0: tensor(10), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12830 dynamic_size: 10 +filter out voxels: 10711 +First batch: fn: 1.0000, fp: 5.0547, label 0: tensor(10), label 1: tensor(197) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12759 dynamic_size: 10 +filter out voxels: 10640 +First batch: fn: 1.0000, fp: 5.0212, label 0: tensor(10), label 1: tensor(182) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12755 dynamic_size: 10 +filter out voxels: 10636 +First batch: fn: 1.0000, fp: 5.0193, label 0: tensor(6), label 1: tensor(160) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12869 dynamic_size: 10 +filter out voxels: 10750 +First batch: fn: 1.0000, fp: 5.0731, label 0: tensor(8), label 1: tensor(225) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12881 dynamic_size: 10 +filter out voxels: 10762 +First batch: fn: 1.0000, fp: 5.0788, label 0: tensor(10), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12829 dynamic_size: 10 +filter out voxels: 10710 +First batch: fn: 1.0000, fp: 5.0543, label 0: tensor(5), label 1: tensor(181) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12966 dynamic_size: 10 +filter out voxels: 10847 +First batch: fn: 1.0000, fp: 5.1189, label 0: tensor(10), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12730 dynamic_size: 10 +filter out voxels: 10611 +First batch: fn: 1.0000, fp: 5.0076, label 0: tensor(9), label 1: tensor(177) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:33:34.015] dice before refine 0.0 and after 0.0, label 0: tensor(9, device='cuda:0'), label 1: tensor(177, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4016 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(382) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:33:34.470] dice before refine 0.0 and after 0.00048426148714497685, label 0: tensor(0, device='cuda:0'), label 1: tensor(382, device='cuda:0') +num_clicks 10 points_length: 8256 dynamic_size: 10 +filter out voxels: 3858 +First batch: fn: 0.9995, fp: 1.0563, label 0: tensor(115), label 1: tensor(386) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7879 dynamic_size: 10 +filter out voxels: 3560 +First batch: fn: 1.0000, fp: 0.9619, label 0: tensor(72), label 1: tensor(398) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7881 dynamic_size: 10 +filter out voxels: 3600 +First batch: fn: 1.0000, fp: 0.9624, label 0: tensor(70), label 1: tensor(328) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7742 dynamic_size: 10 +filter out voxels: 3499 +First batch: fn: 1.0000, fp: 0.9278, label 0: tensor(79), label 1: tensor(405) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7803 dynamic_size: 10 +filter out voxels: 3583 +First batch: fn: 0.9958, fp: 0.9472, label 0: tensor(70), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7889 dynamic_size: 10 +filter out voxels: 3669 +First batch: fn: 0.9933, fp: 0.9711, label 0: tensor(84), label 1: tensor(440) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7804 dynamic_size: 10 +filter out voxels: 3617 +First batch: fn: 0.9915, fp: 0.9517, label 0: tensor(67), label 1: tensor(435) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7733 dynamic_size: 10 +filter out voxels: 3558 +First batch: fn: 0.9915, fp: 0.9340, label 0: tensor(66), label 1: tensor(398) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7780 dynamic_size: 10 +filter out voxels: 3603 +First batch: fn: 0.9918, fp: 0.9455, label 0: tensor(60), label 1: tensor(386) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7727 dynamic_size: 10 +filter out voxels: 3558 +First batch: fn: 0.9908, fp: 0.9333, label 0: tensor(62), label 1: tensor(439) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:33:41.447] dice before refine 0.0 and after 0.011266163550317287, label 0: tensor(62, device='cuda:0'), label 1: tensor(439, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 343 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:33:41.814] dice before refine 0.006399999838322401 and after 0.003657938214018941, label 0: tensor(0, device='cuda:0'), label 1: tensor(39, device='cuda:0') +num_clicks 10 points_length: 22335 dynamic_size: 10 +filter out voxels: 22019 +First batch: fn: 0.8805, fp: 64.2362, label 0: tensor(24), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19718 dynamic_size: 10 +filter out voxels: 19427 +First batch: fn: 0.8222, fp: 56.6647, label 0: tensor(18), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19389 dynamic_size: 10 +filter out voxels: 19114 +First batch: fn: 0.7755, fp: 55.7522, label 0: tensor(19), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18851 dynamic_size: 10 +filter out voxels: 18579 +First batch: fn: 0.7726, fp: 54.1866, label 0: tensor(17), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19432 dynamic_size: 10 +filter out voxels: 19159 +First batch: fn: 0.7697, fp: 55.8834, label 0: tensor(19), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19313 dynamic_size: 10 +filter out voxels: 19048 +First batch: fn: 0.7493, fp: 55.5569, label 0: tensor(17), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19102 dynamic_size: 10 +filter out voxels: 18840 +First batch: fn: 0.7434, fp: 54.9475, label 0: tensor(17), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19297 dynamic_size: 10 +filter out voxels: 19032 +First batch: fn: 0.7464, fp: 55.5131, label 0: tensor(19), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19200 dynamic_size: 10 +filter out voxels: 18939 +First batch: fn: 0.7376, fp: 55.2391, label 0: tensor(18), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19296 dynamic_size: 10 +filter out voxels: 19036 +First batch: fn: 0.7347, fp: 55.5219, label 0: tensor(18), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:33:45.176] dice before refine 0.007054673507809639 and after 0.009987261146306992, label 0: tensor(18, device='cuda:0'), label 1: tensor(60, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 2248 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(182) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:33:45.588] dice before refine 0.0 and after 0.00017222078167833388, label 0: tensor(0, device='cuda:0'), label 1: tensor(182, device='cuda:0') +num_clicks 10 points_length: 69666 dynamic_size: 10 +filter out voxels: 41533 +First batch: fn: 0.9973, fp: 29.9929, label 0: tensor(510), label 1: tensor(237) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 64860 dynamic_size: 10 +filter out voxels: 38881 +First batch: fn: 0.9827, fp: 27.8697, label 0: tensor(510), label 1: tensor(243) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 64488 dynamic_size: 10 +filter out voxels: 38923 +First batch: fn: 0.9724, fp: 27.7144, label 0: tensor(510), label 1: tensor(270) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 64661 dynamic_size: 10 +filter out voxels: 39323 +First batch: fn: 0.9662, fp: 27.7976, label 0: tensor(510), label 1: tensor(254) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 63085 dynamic_size: 10 +filter out voxels: 38495 +First batch: fn: 0.9582, fp: 27.1045, label 0: tensor(507), label 1: tensor(348) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 62883 dynamic_size: 10 +filter out voxels: 38527 +First batch: fn: 0.9484, fp: 27.0245, label 0: tensor(510), label 1: tensor(327) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 64172 dynamic_size: 10 +filter out voxels: 39569 +First batch: fn: 0.9484, fp: 27.5979, label 0: tensor(510), label 1: tensor(259) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 63196 dynamic_size: 10 +filter out voxels: 39289 +First batch: fn: 0.9386, fp: 27.1735, label 0: tensor(508), label 1: tensor(318) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 61587 dynamic_size: 10 +filter out voxels: 38611 +First batch: fn: 0.9333, fp: 26.4631, label 0: tensor(509), label 1: tensor(375) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 61501 dynamic_size: 10 +filter out voxels: 38884 +First batch: fn: 0.9226, fp: 26.4355, label 0: tensor(510), label 1: tensor(380) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:33:54.471] dice before refine 0.0 and after 0.005602696910500526, label 0: tensor(510, device='cuda:0'), label 1: tensor(380, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3675 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(260) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:33:54.889] dice before refine 0.0 and after 0.001317749498412013, label 0: tensor(0, device='cuda:0'), label 1: tensor(260, device='cuda:0') +num_clicks 10 points_length: 34862 dynamic_size: 10 +filter out voxels: 30825 +First batch: fn: 0.9937, fp: 8.4925, label 0: tensor(84), label 1: tensor(396) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34236 dynamic_size: 10 +filter out voxels: 30290 +First batch: fn: 0.9818, fp: 8.3341, label 0: tensor(92), label 1: tensor(397) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34214 dynamic_size: 10 +filter out voxels: 30354 +First batch: fn: 0.9739, fp: 8.3361, label 0: tensor(68), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34430 dynamic_size: 10 +filter out voxels: 30602 +First batch: fn: 0.9676, fp: 8.4011, label 0: tensor(84), label 1: tensor(431) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34252 dynamic_size: 10 +filter out voxels: 30476 +First batch: fn: 0.9649, fp: 8.3554, label 0: tensor(72), label 1: tensor(484) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34364 dynamic_size: 10 +filter out voxels: 30597 +First batch: fn: 0.9649, fp: 8.3858, label 0: tensor(71), label 1: tensor(441) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33966 dynamic_size: 10 +filter out voxels: 30219 +First batch: fn: 0.9668, fp: 8.2756, label 0: tensor(65), label 1: tensor(391) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34211 dynamic_size: 10 +filter out voxels: 30495 +First batch: fn: 0.9630, fp: 8.3461, label 0: tensor(62), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34446 dynamic_size: 10 +filter out voxels: 30728 +First batch: fn: 0.9624, fp: 8.4106, label 0: tensor(62), label 1: tensor(366) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34164 dynamic_size: 10 +filter out voxels: 30472 +First batch: fn: 0.9605, fp: 8.3358, label 0: tensor(53), label 1: tensor(355) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:01.527] dice before refine 0.0 and after 0.008733624592423439, label 0: tensor(53, device='cuda:0'), label 1: tensor(355, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.0013567869464168325 +[21:34:02.077] epoch: 0/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.0013567869464168325 stich left and right side (total size): 1 +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:02.596] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(90, device='cuda:0') +num_clicks 10 points_length: 12059 dynamic_size: 10 +filter out voxels: 7750 +First batch: fn: 1.0000, fp: 2.8404, label 0: tensor(222), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10977 dynamic_size: 10 +filter out voxels: 6987 +First batch: fn: 1.0000, fp: 2.4959, label 0: tensor(105), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10787 dynamic_size: 10 +filter out voxels: 6888 +First batch: fn: 1.0000, fp: 2.4354, label 0: tensor(135), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10603 dynamic_size: 10 +filter out voxels: 6822 +First batch: fn: 1.0000, fp: 2.3768, label 0: tensor(126), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10304 dynamic_size: 10 +filter out voxels: 6630 +First batch: fn: 1.0000, fp: 2.2815, label 0: tensor(112), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10397 dynamic_size: 10 +filter out voxels: 6793 +First batch: fn: 1.0000, fp: 2.3111, label 0: tensor(111), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10545 dynamic_size: 10 +filter out voxels: 6944 +First batch: fn: 1.0000, fp: 2.3583, label 0: tensor(95), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10247 dynamic_size: 10 +filter out voxels: 6704 +First batch: fn: 1.0000, fp: 2.2634, label 0: tensor(92), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10278 dynamic_size: 10 +filter out voxels: 6745 +First batch: fn: 1.0000, fp: 2.2732, label 0: tensor(79), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10336 dynamic_size: 10 +filter out voxels: 6793 +First batch: fn: 1.0000, fp: 2.2917, label 0: tensor(77), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:07.256] dice before refine 0.0 and after 0.0, label 0: tensor(77, device='cuda:0'), label 1: tensor(115, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:07.626] dice before refine 0.0033370412420481443 and after 0.015297775156795979, label 0: tensor(0, device='cuda:0'), label 1: tensor(87, device='cuda:0') +num_clicks 10 points_length: 24074 dynamic_size: 10 +filter out voxels: 15663 +First batch: fn: 0.9404, fp: 6.7264, label 0: tensor(508), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21268 dynamic_size: 10 +filter out voxels: 13590 +First batch: fn: 0.9264, fp: 5.8468, label 0: tensor(510), label 1: tensor(185) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20657 dynamic_size: 10 +filter out voxels: 13411 +First batch: fn: 0.9115, fp: 5.6672, label 0: tensor(509), label 1: tensor(195) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19706 dynamic_size: 10 +filter out voxels: 12949 +First batch: fn: 0.9115, fp: 5.3643, label 0: tensor(441), label 1: tensor(225) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19051 dynamic_size: 10 +filter out voxels: 12735 +First batch: fn: 0.9032, fp: 5.1640, label 0: tensor(404), label 1: tensor(295) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18979 dynamic_size: 10 +filter out voxels: 12920 +First batch: fn: 0.8873, fp: 5.1570, label 0: tensor(456), label 1: tensor(286) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18822 dynamic_size: 10 +filter out voxels: 13024 +First batch: fn: 0.8739, fp: 5.1204, label 0: tensor(398), label 1: tensor(296) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18517 dynamic_size: 10 +filter out voxels: 12941 +First batch: fn: 0.8576, fp: 5.0395, label 0: tensor(320), label 1: tensor(328) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19278 dynamic_size: 10 +filter out voxels: 13699 +First batch: fn: 0.8481, fp: 5.2914, label 0: tensor(446), label 1: tensor(301) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18321 dynamic_size: 10 +filter out voxels: 13107 +First batch: fn: 0.8325, fp: 5.0022, label 0: tensor(355), label 1: tensor(291) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:15.022] dice before refine 0.002934272401034832 and after 0.05618207901716232, label 0: tensor(355, device='cuda:0'), label 1: tensor(291, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:15.412] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(85, device='cuda:0') +num_clicks 10 points_length: 10686 dynamic_size: 10 +filter out voxels: 6110 +First batch: fn: 1.0000, fp: 2.4032, label 0: tensor(228), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9907 dynamic_size: 10 +filter out voxels: 5635 +First batch: fn: 1.0000, fp: 2.1551, label 0: tensor(152), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9394 dynamic_size: 10 +filter out voxels: 5364 +First batch: fn: 1.0000, fp: 1.9917, label 0: tensor(103), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8962 dynamic_size: 10 +filter out voxels: 5089 +First batch: fn: 1.0000, fp: 1.8541, label 0: tensor(133), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8882 dynamic_size: 10 +filter out voxels: 5100 +First batch: fn: 1.0000, fp: 1.8287, label 0: tensor(82), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8816 dynamic_size: 10 +filter out voxels: 5080 +First batch: fn: 1.0000, fp: 1.8076, label 0: tensor(91), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8846 dynamic_size: 10 +filter out voxels: 5157 +First batch: fn: 1.0000, fp: 1.8172, label 0: tensor(123), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8914 dynamic_size: 10 +filter out voxels: 5268 +First batch: fn: 0.9994, fp: 1.8395, label 0: tensor(94), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8935 dynamic_size: 10 +filter out voxels: 5287 +First batch: fn: 0.9994, fp: 1.8462, label 0: tensor(79), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8844 dynamic_size: 10 +filter out voxels: 5227 +First batch: fn: 0.9990, fp: 1.8175, label 0: tensor(80), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:19.957] dice before refine 0.0 and after 0.0006927606300450861, label 0: tensor(80, device='cuda:0'), label 1: tensor(95, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:20.331] dice before refine 0.004847832024097443 and after 0.01776573248207569, label 0: tensor(0, device='cuda:0'), label 1: tensor(97, device='cuda:0') +num_clicks 10 points_length: 26096 dynamic_size: 10 +filter out voxels: 15821 +First batch: fn: 0.9248, fp: 7.3860, label 0: tensor(508), label 1: tensor(233) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22388 dynamic_size: 10 +filter out voxels: 13181 +First batch: fn: 0.9054, fp: 6.2245, label 0: tensor(508), label 1: tensor(198) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21490 dynamic_size: 10 +filter out voxels: 12832 +First batch: fn: 0.8965, fp: 5.9475, label 0: tensor(509), label 1: tensor(399) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21149 dynamic_size: 10 +filter out voxels: 12982 +First batch: fn: 0.8389, fp: 5.8965, label 0: tensor(510), label 1: tensor(275) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21053 dynamic_size: 10 +filter out voxels: 13230 +First batch: fn: 0.8287, fp: 5.8761, label 0: tensor(509), label 1: tensor(268) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19992 dynamic_size: 10 +filter out voxels: 12683 +First batch: fn: 0.8194, fp: 5.5475, label 0: tensor(502), label 1: tensor(249) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19235 dynamic_size: 10 +filter out voxels: 12407 +First batch: fn: 0.8073, fp: 5.3185, label 0: tensor(372), label 1: tensor(335) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19933 dynamic_size: 10 +filter out voxels: 13075 +First batch: fn: 0.8032, fp: 5.5449, label 0: tensor(477), label 1: tensor(471) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19706 dynamic_size: 10 +filter out voxels: 13120 +First batch: fn: 0.7857, fp: 5.4901, label 0: tensor(451), label 1: tensor(306) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18899 dynamic_size: 10 +filter out voxels: 12630 +First batch: fn: 0.7793, fp: 5.2395, label 0: tensor(445), label 1: tensor(275) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:28.233] dice before refine 0.004127358552068472 and after 0.07265148311853409, label 0: tensor(445, device='cuda:0'), label 1: tensor(275, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +0.0363835563713854 +[21:34:29.441] epoch: 0/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.0363835563713854 stich left and right side (total size): 1 +num_clicks 10 points_length: 23364 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:29.956] dice before refine 0.00042682146886363626 and after 0.0014713996788486838, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 32574 dynamic_size: 10 +filter out voxels: 9234 +First batch: fn: 0.9990, fp: 0.3952, label 0: tensor(1), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31791 dynamic_size: 10 +filter out voxels: 8514 +First batch: fn: 0.9963, fp: 0.3644, label 0: tensor(1), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30126 dynamic_size: 10 +filter out voxels: 6852 +First batch: fn: 0.9961, fp: 0.2933, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30821 dynamic_size: 10 +filter out voxels: 7563 +First batch: fn: 0.9955, fp: 0.3237, label 0: tensor(4), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30720 dynamic_size: 10 +filter out voxels: 7508 +First batch: fn: 0.9935, fp: 0.3213, label 0: tensor(4), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31332 dynamic_size: 10 +filter out voxels: 8255 +First batch: fn: 0.9877, fp: 0.3533, label 0: tensor(2), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31465 dynamic_size: 10 +filter out voxels: 8512 +First batch: fn: 0.9824, fp: 0.3643, label 0: tensor(4), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30511 dynamic_size: 10 +filter out voxels: 7683 +First batch: fn: 0.9771, fp: 0.3288, label 0: tensor(3), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30667 dynamic_size: 10 +filter out voxels: 8031 +First batch: fn: 0.9688, fp: 0.3437, label 0: tensor(2), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31300 dynamic_size: 10 +filter out voxels: 8805 +First batch: fn: 0.9628, fp: 0.3769, label 0: tensor(3), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:36.814] dice before refine 0.0003415592072997242 and after 0.05418814346194267, label 0: tensor(3, device='cuda:0'), label 1: tensor(507, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 88105 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:37.376] dice before refine 0.0038961186073720455 and after 0.3163600265979767, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 73533 dynamic_size: 10 +filter out voxels: 2420 +First batch: fn: 0.8069, fp: 0.0277, label 0: tensor(13), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74017 dynamic_size: 10 +filter out voxels: 2154 +First batch: fn: 0.8155, fp: 0.0246, label 0: tensor(6), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 73751 dynamic_size: 10 +filter out voxels: 2139 +First batch: fn: 0.8126, fp: 0.0244, label 0: tensor(7), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 73509 dynamic_size: 10 +filter out voxels: 2146 +First batch: fn: 0.8098, fp: 0.0245, label 0: tensor(9), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 72776 dynamic_size: 10 +filter out voxels: 2297 +First batch: fn: 0.7997, fp: 0.0263, label 0: tensor(9), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 72065 dynamic_size: 10 +filter out voxels: 2413 +First batch: fn: 0.7903, fp: 0.0276, label 0: tensor(13), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 72682 dynamic_size: 10 +filter out voxels: 2093 +First batch: fn: 0.8010, fp: 0.0239, label 0: tensor(7), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 72203 dynamic_size: 10 +filter out voxels: 2083 +First batch: fn: 0.7957, fp: 0.0238, label 0: tensor(6), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 70817 dynamic_size: 10 +filter out voxels: 2387 +First batch: fn: 0.7765, fp: 0.0273, label 0: tensor(11), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 71485 dynamic_size: 10 +filter out voxels: 2147 +First batch: fn: 0.7868, fp: 0.0245, label 0: tensor(7), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:44.881] dice before refine 0.003805597312748432 and after 0.3643198013305664, label 0: tensor(7, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 204709 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:45.555] dice before refine 0.0003809300542343408 and after 0.06998071074485779, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 199584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9633, fp: 0.0116, label 0: tensor(444), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 199513 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9674, fp: 0.0073, label 0: tensor(287), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 198929 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9659, fp: 0.0058, label 0: tensor(255), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 198339 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9638, fp: 0.0051, label 0: tensor(176), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 198095 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9634, fp: 0.0043, label 0: tensor(201), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 197805 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9629, fp: 0.0034, label 0: tensor(152), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 197523 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9611, fp: 0.0038, label 0: tensor(140), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 197650 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9624, fp: 0.0031, label 0: tensor(142), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 197585 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9624, fp: 0.0028, label 0: tensor(123), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 197087 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9597, fp: 0.0031, label 0: tensor(157), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:56.130] dice before refine 0.00023444482940249145 and after 0.07545099407434464, label 0: tensor(157, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 347521 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:34:56.965] dice before refine 0.0012250742875039577 and after 0.040976352989673615, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 340252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9791, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 339886 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9780, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 340022 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9784, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 339051 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9756, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 339281 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9763, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 338729 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9747, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 338206 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9732, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 337131 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9701, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 337501 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9712, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 338393 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9737, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:07.108] dice before refine 0.0013515222817659378 and after 0.06268169730901718, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25099 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:07.559] dice before refine 0.0008709077374078333 and after 0.02366194874048233, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 46626 dynamic_size: 10 +filter out voxels: 21466 +First batch: fn: 0.9775, fp: 0.8802, label 0: tensor(94), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43831 dynamic_size: 10 +filter out voxels: 19109 +First batch: fn: 0.9655, fp: 0.7808, label 0: tensor(84), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42793 dynamic_size: 10 +filter out voxels: 18288 +First batch: fn: 0.9604, fp: 0.7445, label 0: tensor(73), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42160 dynamic_size: 10 +filter out voxels: 17857 +First batch: fn: 0.9549, fp: 0.7248, label 0: tensor(60), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42899 dynamic_size: 10 +filter out voxels: 19001 +First batch: fn: 0.9378, fp: 0.7714, label 0: tensor(94), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41791 dynamic_size: 10 +filter out voxels: 18144 +First batch: fn: 0.9306, fp: 0.7344, label 0: tensor(72), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41662 dynamic_size: 10 +filter out voxels: 18163 +First batch: fn: 0.9259, fp: 0.7340, label 0: tensor(61), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42355 dynamic_size: 10 +filter out voxels: 19018 +First batch: fn: 0.9183, fp: 0.7692, label 0: tensor(72), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37304 dynamic_size: 10 +filter out voxels: 13872 +First batch: fn: 0.9276, fp: 0.5587, label 0: tensor(55), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37882 dynamic_size: 10 +filter out voxels: 14586 +First batch: fn: 0.9228, fp: 0.5865, label 0: tensor(51), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:14.900] dice before refine 0.0007929271087050438 and after 0.10599236190319061, label 0: tensor(51, device='cuda:0'), label 1: tensor(504, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 82461 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:15.482] dice before refine 0.0020348343532532454 and after 0.1640280783176422, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 79312 dynamic_size: 10 +filter out voxels: 2785 +First batch: fn: 0.9056, fp: 0.0562, label 0: tensor(288), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 79215 dynamic_size: 10 +filter out voxels: 2308 +First batch: fn: 0.9160, fp: 0.0446, label 0: tensor(225), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 78481 dynamic_size: 10 +filter out voxels: 2315 +First batch: fn: 0.9094, fp: 0.0423, label 0: tensor(161), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 77636 dynamic_size: 10 +filter out voxels: 2346 +First batch: fn: 0.9002, fp: 0.0413, label 0: tensor(233), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76809 dynamic_size: 10 +filter out voxels: 2511 +First batch: fn: 0.8900, fp: 0.0415, label 0: tensor(154), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76732 dynamic_size: 10 +filter out voxels: 2324 +First batch: fn: 0.8937, fp: 0.0368, label 0: tensor(150), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76150 dynamic_size: 10 +filter out voxels: 2334 +First batch: fn: 0.8876, fp: 0.0358, label 0: tensor(133), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75600 dynamic_size: 10 +filter out voxels: 2343 +First batch: fn: 0.8812, fp: 0.0356, label 0: tensor(141), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74320 dynamic_size: 10 +filter out voxels: 2619 +First batch: fn: 0.8615, fp: 0.0398, label 0: tensor(126), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75003 dynamic_size: 10 +filter out voxels: 2301 +First batch: fn: 0.8754, fp: 0.0342, label 0: tensor(135), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:24.808] dice before refine 0.0022041103802621365 and after 0.24722982943058014, label 0: tensor(135, device='cuda:0'), label 1: tensor(509, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 308412 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:25.602] dice before refine 0.00161983713041991 and after 0.1751549243927002, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 279248 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.9039, fp: 0.0016, label 0: tensor(83), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 280780 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.9092, fp: 0.0012, label 0: tensor(86), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 278785 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.9028, fp: 0.0011, label 0: tensor(97), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 278718 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.9027, fp: 0.0010, label 0: tensor(78), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 278665 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.9027, fp: 0.0009, label 0: tensor(100), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 279717 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.9063, fp: 0.0007, label 0: tensor(50), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 278970 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.9039, fp: 0.0006, label 0: tensor(60), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 276726 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.8966, fp: 0.0007, label 0: tensor(46), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 276030 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.8943, fp: 0.0007, label 0: tensor(54), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 276225 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.8950, fp: 0.0007, label 0: tensor(61), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:35.752] dice before refine 0.0016068993136286736 and after 0.19048093259334564, label 0: tensor(61, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 355661 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:36.614] dice before refine 0.001275671529583633 and after 0.03225815296173096, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 349979 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9836, fp: 0.0004, label 0: tensor(31), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 350481 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9850, fp: 0.0004, label 0: tensor(31), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 350481 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9851, fp: 0.0003, label 0: tensor(19), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 350148 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9842, fp: 0.0003, label 0: tensor(22), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 350013 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9838, fp: 0.0003, label 0: tensor(22), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 349876 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9835, fp: 0.0002, label 0: tensor(18), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 349613 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9828, fp: 0.0002, label 0: tensor(13), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 349263 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9818, fp: 0.0002, label 0: tensor(19), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 349241 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9818, fp: 0.0002, label 0: tensor(23), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 349020 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9811, fp: 0.0002, label 0: tensor(19), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:46.975] dice before refine 0.0013093675952404737 and after 0.04452347382903099, label 0: tensor(19, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.08414647118611769 +[21:35:47.653] epoch: 0/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.08414647118611769 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:48.167] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 17842 dynamic_size: 10 +filter out voxels: 17809 +First batch: fn: 1.0000, fp: 539.6667, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18581 dynamic_size: 10 +filter out voxels: 18548 +First batch: fn: 1.0000, fp: 562.0606, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18112 dynamic_size: 10 +filter out voxels: 18079 +First batch: fn: 1.0000, fp: 547.8485, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17960 dynamic_size: 10 +filter out voxels: 17927 +First batch: fn: 1.0000, fp: 543.2424, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18906 dynamic_size: 10 +filter out voxels: 18873 +First batch: fn: 1.0000, fp: 571.9091, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18627 dynamic_size: 10 +filter out voxels: 18594 +First batch: fn: 1.0000, fp: 563.4545, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19731 dynamic_size: 10 +filter out voxels: 19698 +First batch: fn: 1.0000, fp: 596.9091, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18237 dynamic_size: 10 +filter out voxels: 18204 +First batch: fn: 1.0000, fp: 551.6364, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18661 dynamic_size: 10 +filter out voxels: 18628 +First batch: fn: 1.0000, fp: 564.4849, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18198 dynamic_size: 10 +filter out voxels: 18165 +First batch: fn: 1.0000, fp: 550.4545, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:51.049] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:51.429] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 27342 dynamic_size: 10 +filter out voxels: 27309 +First batch: fn: 1.0000, fp: 827.5455, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27939 dynamic_size: 10 +filter out voxels: 27906 +First batch: fn: 1.0000, fp: 845.6364, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27630 dynamic_size: 10 +filter out voxels: 27597 +First batch: fn: 1.0000, fp: 836.2727, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28165 dynamic_size: 10 +filter out voxels: 28132 +First batch: fn: 1.0000, fp: 852.4849, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28162 dynamic_size: 10 +filter out voxels: 28129 +First batch: fn: 1.0000, fp: 852.3939, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27724 dynamic_size: 10 +filter out voxels: 27691 +First batch: fn: 1.0000, fp: 839.1212, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27606 dynamic_size: 10 +filter out voxels: 27573 +First batch: fn: 1.0000, fp: 835.5455, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27664 dynamic_size: 10 +filter out voxels: 27631 +First batch: fn: 1.0000, fp: 837.3030, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27989 dynamic_size: 10 +filter out voxels: 27956 +First batch: fn: 1.0000, fp: 847.1515, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28412 dynamic_size: 10 +filter out voxels: 28379 +First batch: fn: 1.0000, fp: 859.9697, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:54.274] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.0 +[21:35:54.719] epoch: 0/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:55.186] dice before refine 0.0 and after 0.026678141206502914, label 0: tensor(0, device='cuda:0'), label 1: tensor(168, device='cuda:0') +num_clicks 10 points_length: 2262 dynamic_size: 10 +filter out voxels: 889 +First batch: fn: 0.9779, fp: 0.6332, label 0: tensor(4), label 1: tensor(176) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2147 dynamic_size: 10 +filter out voxels: 825 +First batch: fn: 0.9416, fp: 0.5876, label 0: tensor(6), label 1: tensor(285) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2034 dynamic_size: 10 +filter out voxels: 778 +First batch: fn: 0.8946, fp: 0.5541, label 0: tensor(5), label 1: tensor(206) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2024 dynamic_size: 10 +filter out voxels: 797 +First batch: fn: 0.8739, fp: 0.5677, label 0: tensor(1), label 1: tensor(141) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1992 dynamic_size: 10 +filter out voxels: 781 +First batch: fn: 0.8625, fp: 0.5563, label 0: tensor(6), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1955 dynamic_size: 10 +filter out voxels: 746 +First batch: fn: 0.8611, fp: 0.5313, label 0: tensor(3), label 1: tensor(223) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1984 dynamic_size: 10 +filter out voxels: 803 +First batch: fn: 0.8412, fp: 0.5719, label 0: tensor(6), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1927 dynamic_size: 10 +filter out voxels: 740 +First batch: fn: 0.8454, fp: 0.5271, label 0: tensor(5), label 1: tensor(282) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1922 dynamic_size: 10 +filter out voxels: 749 +First batch: fn: 0.8355, fp: 0.5335, label 0: tensor(2), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1901 dynamic_size: 10 +filter out voxels: 738 +First batch: fn: 0.8283, fp: 0.5256, label 0: tensor(3), label 1: tensor(207) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:35:59.697] dice before refine 0.0 and after 0.20212766528129578, label 0: tensor(3, device='cuda:0'), label 1: tensor(207, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4392 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(497) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:00.117] dice before refine 0.00045320644858293235 and after 0.19218826293945312, label 0: tensor(0, device='cuda:0'), label 1: tensor(497, device='cuda:0') +num_clicks 10 points_length: 4943 dynamic_size: 10 +filter out voxels: 1068 +First batch: fn: 0.8661, fp: 0.2593, label 0: tensor(19), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4686 dynamic_size: 10 +filter out voxels: 1075 +First batch: fn: 0.8024, fp: 0.2646, label 0: tensor(36), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4474 dynamic_size: 10 +filter out voxels: 1063 +First batch: fn: 0.7582, fp: 0.2605, label 0: tensor(36), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4371 dynamic_size: 10 +filter out voxels: 1060 +First batch: fn: 0.7352, fp: 0.2600, label 0: tensor(27), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4279 dynamic_size: 10 +filter out voxels: 1062 +First batch: fn: 0.7133, fp: 0.2609, label 0: tensor(26), label 1: tensor(464) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4206 dynamic_size: 10 +filter out voxels: 1060 +First batch: fn: 0.6967, fp: 0.2609, label 0: tensor(26), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4148 dynamic_size: 10 +filter out voxels: 1055 +First batch: fn: 0.6853, fp: 0.2591, label 0: tensor(35), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4116 dynamic_size: 10 +filter out voxels: 1046 +First batch: fn: 0.6803, fp: 0.2568, label 0: tensor(25), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4072 dynamic_size: 10 +filter out voxels: 1056 +First batch: fn: 0.6678, fp: 0.2593, label 0: tensor(35), label 1: tensor(464) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4057 dynamic_size: 10 +filter out voxels: 1055 +First batch: fn: 0.6644, fp: 0.2593, label 0: tensor(35), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:06.726] dice before refine 0.0004534119216259569 and after 0.42451760172843933, label 0: tensor(35, device='cuda:0'), label 1: tensor(508, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:07.100] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(179, device='cuda:0') +num_clicks 10 points_length: 1446 dynamic_size: 10 +filter out voxels: 42 +First batch: fn: 1.0000, fp: 0.0299, label 0: tensor(0), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1449 dynamic_size: 10 +filter out voxels: 45 +First batch: fn: 1.0000, fp: 0.0321, label 0: tensor(1), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1403 dynamic_size: 10 +filter out voxels: 40 +First batch: fn: 0.9708, fp: 0.0285, label 0: tensor(1), label 1: tensor(194) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1386 dynamic_size: 10 +filter out voxels: 39 +First batch: fn: 0.9594, fp: 0.0278, label 0: tensor(0), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1362 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.9430, fp: 0.0271, label 0: tensor(0), label 1: tensor(310) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1318 dynamic_size: 10 +filter out voxels: 37 +First batch: fn: 0.9124, fp: 0.0264, label 0: tensor(0), label 1: tensor(232) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1299 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.8981, fp: 0.0271, label 0: tensor(1), label 1: tensor(243) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1266 dynamic_size: 10 +filter out voxels: 37 +First batch: fn: 0.8754, fp: 0.0264, label 0: tensor(0), label 1: tensor(177) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1251 dynamic_size: 10 +filter out voxels: 37 +First batch: fn: 0.8647, fp: 0.0264, label 0: tensor(1), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1244 dynamic_size: 10 +filter out voxels: 37 +First batch: fn: 0.8597, fp: 0.0264, label 0: tensor(0), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:11.217] dice before refine 0.0 and after 0.24053724110126495, label 0: tensor(0, device='cuda:0'), label 1: tensor(180, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4409 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:11.633] dice before refine 0.0017929179593920708 and after 0.24622531235218048, label 0: tensor(0, device='cuda:0'), label 1: tensor(522, device='cuda:0') +num_clicks 10 points_length: 5841 dynamic_size: 10 +filter out voxels: 2347 +First batch: fn: 0.7836, fp: 0.5412, label 0: tensor(17), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5544 dynamic_size: 10 +filter out voxels: 2342 +First batch: fn: 0.7169, fp: 0.5405, label 0: tensor(16), label 1: tensor(481) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5345 dynamic_size: 10 +filter out voxels: 2357 +First batch: fn: 0.6659, fp: 0.5464, label 0: tensor(21), label 1: tensor(470) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5205 dynamic_size: 10 +filter out voxels: 2336 +First batch: fn: 0.6389, fp: 0.5416, label 0: tensor(29), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5141 dynamic_size: 10 +filter out voxels: 2345 +First batch: fn: 0.6217, fp: 0.5443, label 0: tensor(27), label 1: tensor(434) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5089 dynamic_size: 10 +filter out voxels: 2329 +First batch: fn: 0.6135, fp: 0.5407, label 0: tensor(29), label 1: tensor(431) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5056 dynamic_size: 10 +filter out voxels: 2332 +First batch: fn: 0.6051, fp: 0.5416, label 0: tensor(34), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4999 dynamic_size: 10 +filter out voxels: 2331 +First batch: fn: 0.5927, fp: 0.5412, label 0: tensor(37), label 1: tensor(490) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4988 dynamic_size: 10 +filter out voxels: 2349 +First batch: fn: 0.5861, fp: 0.5452, label 0: tensor(36), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4934 dynamic_size: 10 +filter out voxels: 2332 +First batch: fn: 0.5777, fp: 0.5414, label 0: tensor(32), label 1: tensor(376) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:18.066] dice before refine 0.0013428827514871955 and after 0.4330326020717621, label 0: tensor(32, device='cuda:0'), label 1: tensor(376, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(235) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:18.446] dice before refine 0.0015461924485862255 and after 0.04390612989664078, label 0: tensor(0, device='cuda:0'), label 1: tensor(235, device='cuda:0') +num_clicks 10 points_length: 2526 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9776, fp: 0.0000, label 0: tensor(0), label 1: tensor(341) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2349 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9091, fp: 0.0000, label 0: tensor(0), label 1: tensor(317) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2248 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8700, fp: 0.0000, label 0: tensor(0), label 1: tensor(294) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2211 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8557, fp: 0.0000, label 0: tensor(0), label 1: tensor(385) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2170 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8398, fp: 0.0000, label 0: tensor(0), label 1: tensor(309) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2152 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8328, fp: 0.0000, label 0: tensor(0), label 1: tensor(347) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2099 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8123, fp: 0.0000, label 0: tensor(0), label 1: tensor(367) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2082 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8057, fp: 0.0000, label 0: tensor(0), label 1: tensor(369) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2066 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7995, fp: 0.0000, label 0: tensor(0), label 1: tensor(333) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2055 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7953, fp: 0.0000, label 0: tensor(0), label 1: tensor(264) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:23.430] dice before refine 0.0015461924485862255 and after 0.3457106351852417, label 0: tensor(0, device='cuda:0'), label 1: tensor(264, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8531 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:23.857] dice before refine 0.003975213505327702 and after 0.3840511441230774, label 0: tensor(0, device='cuda:0'), label 1: tensor(526, device='cuda:0') +num_clicks 10 points_length: 6550 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7606, fp: 0.0072, label 0: tensor(15), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6399 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7416, fp: 0.0084, label 0: tensor(27), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6035 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7006, fp: 0.0068, label 0: tensor(21), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5809 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6726, fp: 0.0083, label 0: tensor(20), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5692 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6592, fp: 0.0080, label 0: tensor(20), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5616 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6507, fp: 0.0076, label 0: tensor(11), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5385 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6208, fp: 0.0104, label 0: tensor(20), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5383 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6215, fp: 0.0095, label 0: tensor(27), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5398 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6249, fp: 0.0079, label 0: tensor(24), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5369 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6216, fp: 0.0077, label 0: tensor(17), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:30.475] dice before refine 0.003976142965257168 and after 0.5473897457122803, label 0: tensor(17, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(202) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:30.857] dice before refine 0.0007733951788395643 and after 0.05251313000917435, label 0: tensor(0, device='cuda:0'), label 1: tensor(202, device='cuda:0') +num_clicks 10 points_length: 2526 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.9729, fp: 0.0046, label 0: tensor(0), label 1: tensor(394) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2375 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.9141, fp: 0.0050, label 0: tensor(0), label 1: tensor(366) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2282 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.8781, fp: 0.0050, label 0: tensor(0), label 1: tensor(248) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2224 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.8557, fp: 0.0050, label 0: tensor(0), label 1: tensor(332) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2174 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.8371, fp: 0.0043, label 0: tensor(0), label 1: tensor(362) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2134 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.8212, fp: 0.0046, label 0: tensor(0), label 1: tensor(472) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2117 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.8142, fp: 0.0050, label 0: tensor(0), label 1: tensor(372) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2109 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.8115, fp: 0.0046, label 0: tensor(0), label 1: tensor(315) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2087 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.8026, fp: 0.0050, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2075 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.7980, fp: 0.0050, label 0: tensor(0), label 1: tensor(388) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:36.035] dice before refine 0.0007733951788395643 and after 0.3332263231277466, label 0: tensor(0, device='cuda:0'), label 1: tensor(388, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:36.460] dice before refine 0.0030352557078003883 and after 0.3505442440509796, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 6981 dynamic_size: 10 +filter out voxels: 310 +First batch: fn: 0.7796, fp: 0.0371, label 0: tensor(3), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6560 dynamic_size: 10 +filter out voxels: 312 +First batch: fn: 0.7294, fp: 0.0380, label 0: tensor(7), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6329 dynamic_size: 10 +filter out voxels: 307 +First batch: fn: 0.7031, fp: 0.0373, label 0: tensor(4), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6257 dynamic_size: 10 +filter out voxels: 309 +First batch: fn: 0.6948, fp: 0.0372, label 0: tensor(5), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6036 dynamic_size: 10 +filter out voxels: 298 +First batch: fn: 0.6700, fp: 0.0361, label 0: tensor(9), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5962 dynamic_size: 10 +filter out voxels: 306 +First batch: fn: 0.6602, fp: 0.0373, label 0: tensor(7), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5860 dynamic_size: 10 +filter out voxels: 301 +First batch: fn: 0.6487, fp: 0.0369, label 0: tensor(15), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5771 dynamic_size: 10 +filter out voxels: 297 +First batch: fn: 0.6390, fp: 0.0361, label 0: tensor(2), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5655 dynamic_size: 10 +filter out voxels: 303 +First batch: fn: 0.6246, fp: 0.0370, label 0: tensor(8), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5523 dynamic_size: 10 +filter out voxels: 290 +First batch: fn: 0.6109, fp: 0.0352, label 0: tensor(6), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:42.942] dice before refine 0.0030356100760400295 and after 0.5535772442817688, label 0: tensor(6, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +0.42724333026192407 +[21:36:43.673] epoch: 0/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.42724333026192407 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(158) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:44.172] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(158, device='cuda:0') +num_clicks 10 points_length: 7577 dynamic_size: 10 +filter out voxels: 6324 +First batch: fn: 1.0000, fp: 5.1154, label 0: tensor(22), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6613 dynamic_size: 10 +filter out voxels: 5370 +First batch: fn: 1.0000, fp: 4.3374, label 0: tensor(12), label 1: tensor(157) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7004 dynamic_size: 10 +filter out voxels: 5759 +First batch: fn: 1.0000, fp: 4.6529, label 0: tensor(14), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7025 dynamic_size: 10 +filter out voxels: 5780 +First batch: fn: 1.0000, fp: 4.6699, label 0: tensor(14), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6846 dynamic_size: 10 +filter out voxels: 5602 +First batch: fn: 1.0000, fp: 4.5254, label 0: tensor(10), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6974 dynamic_size: 10 +filter out voxels: 5729 +First batch: fn: 1.0000, fp: 4.6287, label 0: tensor(15), label 1: tensor(211) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6954 dynamic_size: 10 +filter out voxels: 5709 +First batch: fn: 1.0000, fp: 4.6126, label 0: tensor(12), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6807 dynamic_size: 10 +filter out voxels: 5564 +First batch: fn: 1.0000, fp: 4.4939, label 0: tensor(11), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6929 dynamic_size: 10 +filter out voxels: 5685 +First batch: fn: 1.0000, fp: 4.5924, label 0: tensor(11), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6806 dynamic_size: 10 +filter out voxels: 5563 +First batch: fn: 1.0000, fp: 4.4931, label 0: tensor(11), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:48.139] dice before refine 0.0 and after 0.0, label 0: tensor(11, device='cuda:0'), label 1: tensor(107, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 5457 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:48.564] dice before refine 0.0 and after 0.04056854173541069, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 26393 dynamic_size: 10 +filter out voxels: 10555 +First batch: fn: 0.8977, fp: 3.9388, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25507 dynamic_size: 10 +filter out voxels: 10202 +First batch: fn: 0.9078, fp: 3.7664, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25120 dynamic_size: 10 +filter out voxels: 10098 +First batch: fn: 0.9016, fp: 3.7017, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24650 dynamic_size: 10 +filter out voxels: 9937 +First batch: fn: 0.9076, fp: 3.6095, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24907 dynamic_size: 10 +filter out voxels: 10182 +First batch: fn: 0.9040, fp: 3.6603, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24980 dynamic_size: 10 +filter out voxels: 10348 +First batch: fn: 0.8963, fp: 3.6813, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24373 dynamic_size: 10 +filter out voxels: 10092 +First batch: fn: 0.8992, fp: 3.5672, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24255 dynamic_size: 10 +filter out voxels: 10128 +First batch: fn: 0.9005, fp: 3.5443, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24241 dynamic_size: 10 +filter out voxels: 10201 +First batch: fn: 0.8981, fp: 3.5441, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23917 dynamic_size: 10 +filter out voxels: 10085 +First batch: fn: 0.9023, fp: 3.4805, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:58.916] dice before refine 0.0 and after 0.0423901341855526, label 0: tensor(506, device='cuda:0'), label 1: tensor(504, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(158) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:36:59.359] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(158, device='cuda:0') +num_clicks 10 points_length: 2748 dynamic_size: 10 +filter out voxels: 1509 +First batch: fn: 1.0000, fp: 1.2179, label 0: tensor(4), label 1: tensor(120) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2590 dynamic_size: 10 +filter out voxels: 1351 +First batch: fn: 1.0000, fp: 1.0904, label 0: tensor(6), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2594 dynamic_size: 10 +filter out voxels: 1355 +First batch: fn: 1.0000, fp: 1.0936, label 0: tensor(6), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2571 dynamic_size: 10 +filter out voxels: 1332 +First batch: fn: 1.0000, fp: 1.0751, label 0: tensor(5), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2593 dynamic_size: 10 +filter out voxels: 1354 +First batch: fn: 1.0000, fp: 1.0928, label 0: tensor(4), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2566 dynamic_size: 10 +filter out voxels: 1327 +First batch: fn: 1.0000, fp: 1.0710, label 0: tensor(6), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2575 dynamic_size: 10 +filter out voxels: 1336 +First batch: fn: 1.0000, fp: 1.0783, label 0: tensor(4), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2546 dynamic_size: 10 +filter out voxels: 1307 +First batch: fn: 1.0000, fp: 1.0549, label 0: tensor(5), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2576 dynamic_size: 10 +filter out voxels: 1337 +First batch: fn: 1.0000, fp: 1.0791, label 0: tensor(7), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2599 dynamic_size: 10 +filter out voxels: 1360 +First batch: fn: 1.0000, fp: 1.0977, label 0: tensor(5), label 1: tensor(185) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:03.033] dice before refine 0.0 and after 0.0, label 0: tensor(5, device='cuda:0'), label 1: tensor(185, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 31898 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:03.513] dice before refine 0.006486621219664812 and after 0.369735985994339, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 30247 dynamic_size: 10 +filter out voxels: 3911 +First batch: fn: 0.7219, fp: 0.2264, label 0: tensor(328), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29591 dynamic_size: 10 +filter out voxels: 3387 +First batch: fn: 0.7311, fp: 0.1966, label 0: tensor(477), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29361 dynamic_size: 10 +filter out voxels: 3355 +First batch: fn: 0.7295, fp: 0.1910, label 0: tensor(438), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29303 dynamic_size: 10 +filter out voxels: 3529 +First batch: fn: 0.7238, fp: 0.1948, label 0: tensor(399), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28886 dynamic_size: 10 +filter out voxels: 3409 +First batch: fn: 0.7218, fp: 0.1838, label 0: tensor(393), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28549 dynamic_size: 10 +filter out voxels: 3418 +First batch: fn: 0.7158, fp: 0.1792, label 0: tensor(391), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28268 dynamic_size: 10 +filter out voxels: 3391 +First batch: fn: 0.7104, fp: 0.1758, label 0: tensor(357), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27973 dynamic_size: 10 +filter out voxels: 3371 +First batch: fn: 0.7063, fp: 0.1706, label 0: tensor(302), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27799 dynamic_size: 10 +filter out voxels: 3388 +First batch: fn: 0.7019, fp: 0.1696, label 0: tensor(341), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27597 dynamic_size: 10 +filter out voxels: 3408 +First batch: fn: 0.6996, fp: 0.1656, label 0: tensor(327), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:13.387] dice before refine 0.005431898403912783 and after 0.4143142104148865, label 0: tensor(327, device='cuda:0'), label 1: tensor(508, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +0.3024583784016696 +[21:37:14.284] epoch: 0/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.3024583784016696 stich left and right side (total size): 1 +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:14.713] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(44, device='cuda:0') +num_clicks 10 points_length: 1797 dynamic_size: 10 +filter out voxels: 397 +First batch: fn: 1.0000, fp: 2.6377, label 0: tensor(100), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1303 dynamic_size: 10 +filter out voxels: 242 +First batch: fn: 1.0000, fp: 1.6377, label 0: tensor(101), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1277 dynamic_size: 10 +filter out voxels: 274 +First batch: fn: 1.0000, fp: 1.5850, label 0: tensor(74), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1200 dynamic_size: 10 +filter out voxels: 246 +First batch: fn: 1.0000, fp: 1.4291, label 0: tensor(98), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1106 dynamic_size: 10 +filter out voxels: 252 +First batch: fn: 1.0000, fp: 1.2389, label 0: tensor(72), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1120 dynamic_size: 10 +filter out voxels: 236 +First batch: fn: 1.0000, fp: 1.2672, label 0: tensor(89), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 991 dynamic_size: 10 +filter out voxels: 247 +First batch: fn: 1.0000, fp: 1.0061, label 0: tensor(65), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1067 dynamic_size: 10 +filter out voxels: 244 +First batch: fn: 1.0000, fp: 1.1599, label 0: tensor(80), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 978 dynamic_size: 10 +filter out voxels: 235 +First batch: fn: 1.0000, fp: 0.9798, label 0: tensor(77), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 950 dynamic_size: 10 +filter out voxels: 223 +First batch: fn: 1.0000, fp: 0.9231, label 0: tensor(58), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:18.480] dice before refine 0.0 and after 0.0, label 0: tensor(58, device='cuda:0'), label 1: tensor(36, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:18.845] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(43, device='cuda:0') +num_clicks 10 points_length: 1680 dynamic_size: 10 +filter out voxels: 472 +First batch: fn: 1.0000, fp: 2.4008, label 0: tensor(115), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1609 dynamic_size: 10 +filter out voxels: 504 +First batch: fn: 1.0000, fp: 2.2571, label 0: tensor(77), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1525 dynamic_size: 10 +filter out voxels: 484 +First batch: fn: 1.0000, fp: 2.0870, label 0: tensor(124), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1443 dynamic_size: 10 +filter out voxels: 510 +First batch: fn: 1.0000, fp: 1.9211, label 0: tensor(77), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1375 dynamic_size: 10 +filter out voxels: 486 +First batch: fn: 1.0000, fp: 1.7834, label 0: tensor(60), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1337 dynamic_size: 10 +filter out voxels: 479 +First batch: fn: 1.0000, fp: 1.7065, label 0: tensor(55), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1281 dynamic_size: 10 +filter out voxels: 474 +First batch: fn: 1.0000, fp: 1.5931, label 0: tensor(47), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1257 dynamic_size: 10 +filter out voxels: 478 +First batch: fn: 1.0000, fp: 1.5445, label 0: tensor(51), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1248 dynamic_size: 10 +filter out voxels: 479 +First batch: fn: 1.0000, fp: 1.5263, label 0: tensor(51), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1227 dynamic_size: 10 +filter out voxels: 469 +First batch: fn: 1.0000, fp: 1.4838, label 0: tensor(57), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:22.584] dice before refine 0.0 and after 0.0, label 0: tensor(57, device='cuda:0'), label 1: tensor(34, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:22.956] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(126, device='cuda:0') +num_clicks 10 points_length: 4057 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 1.0000, fp: 3.4098, label 0: tensor(485), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2367 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 1.0000, fp: 1.5728, label 0: tensor(253), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2087 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 1.0000, fp: 1.2685, label 0: tensor(173), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1882 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 1.0457, label 0: tensor(184), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1633 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.7750, label 0: tensor(169), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1529 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.6620, label 0: tensor(123), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1576 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.7130, label 0: tensor(136), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1342 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.4587, label 0: tensor(121), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1405 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.5272, label 0: tensor(131), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1243 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.3511, label 0: tensor(94), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:28.349] dice before refine 0.0 and after 0.0, label 0: tensor(94, device='cuda:0'), label 1: tensor(153, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:28.721] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(113, device='cuda:0') +num_clicks 10 points_length: 4912 dynamic_size: 10 +filter out voxels: 65 +First batch: fn: 1.0000, fp: 4.3391, label 0: tensor(406), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4490 dynamic_size: 10 +filter out voxels: 59 +First batch: fn: 1.0000, fp: 3.8804, label 0: tensor(418), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4302 dynamic_size: 10 +filter out voxels: 62 +First batch: fn: 1.0000, fp: 3.6761, label 0: tensor(508), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4036 dynamic_size: 10 +filter out voxels: 73 +First batch: fn: 1.0000, fp: 3.3870, label 0: tensor(529), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3522 dynamic_size: 10 +filter out voxels: 67 +First batch: fn: 1.0000, fp: 2.8283, label 0: tensor(329), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3087 dynamic_size: 10 +filter out voxels: 64 +First batch: fn: 1.0000, fp: 2.3554, label 0: tensor(382), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2618 dynamic_size: 10 +filter out voxels: 65 +First batch: fn: 1.0000, fp: 1.8457, label 0: tensor(367), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2270 dynamic_size: 10 +filter out voxels: 64 +First batch: fn: 1.0000, fp: 1.4674, label 0: tensor(237), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2126 dynamic_size: 10 +filter out voxels: 53 +First batch: fn: 1.0000, fp: 1.3109, label 0: tensor(237), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1988 dynamic_size: 10 +filter out voxels: 52 +First batch: fn: 1.0000, fp: 1.1609, label 0: tensor(160), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:34.971] dice before refine 0.0 and after 0.0, label 0: tensor(160, device='cuda:0'), label 1: tensor(132, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 838 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:35.344] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(168, device='cuda:0') +num_clicks 10 points_length: 4402 dynamic_size: 10 +filter out voxels: 3228 +First batch: fn: 1.0000, fp: 4.2530, label 0: tensor(55), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3741 dynamic_size: 10 +filter out voxels: 2633 +First batch: fn: 1.0000, fp: 3.4642, label 0: tensor(62), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3744 dynamic_size: 10 +filter out voxels: 2665 +First batch: fn: 1.0000, fp: 3.4678, label 0: tensor(58), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3556 dynamic_size: 10 +filter out voxels: 2523 +First batch: fn: 1.0000, fp: 3.2434, label 0: tensor(44), label 1: tensor(156) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3778 dynamic_size: 10 +filter out voxels: 2749 +First batch: fn: 1.0000, fp: 3.5084, label 0: tensor(68), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3605 dynamic_size: 10 +filter out voxels: 2618 +First batch: fn: 1.0000, fp: 3.3019, label 0: tensor(47), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3611 dynamic_size: 10 +filter out voxels: 2631 +First batch: fn: 1.0000, fp: 3.3091, label 0: tensor(38), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3719 dynamic_size: 10 +filter out voxels: 2732 +First batch: fn: 1.0000, fp: 3.4379, label 0: tensor(33), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3733 dynamic_size: 10 +filter out voxels: 2758 +First batch: fn: 1.0000, fp: 3.4547, label 0: tensor(31), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3749 dynamic_size: 10 +filter out voxels: 2773 +First batch: fn: 1.0000, fp: 3.4737, label 0: tensor(47), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:39.444] dice before refine 0.0 and after 0.0, label 0: tensor(47, device='cuda:0'), label 1: tensor(100, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 901 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:39.821] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(155, device='cuda:0') +num_clicks 10 points_length: 1580 dynamic_size: 10 +filter out voxels: 268 +First batch: fn: 1.0000, fp: 0.7536, label 0: tensor(56), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1486 dynamic_size: 10 +filter out voxels: 246 +First batch: fn: 1.0000, fp: 0.6493, label 0: tensor(61), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1436 dynamic_size: 10 +filter out voxels: 247 +First batch: fn: 1.0000, fp: 0.5938, label 0: tensor(52), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1401 dynamic_size: 10 +filter out voxels: 242 +First batch: fn: 1.0000, fp: 0.5549, label 0: tensor(71), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1341 dynamic_size: 10 +filter out voxels: 243 +First batch: fn: 1.0000, fp: 0.4883, label 0: tensor(41), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1329 dynamic_size: 10 +filter out voxels: 243 +First batch: fn: 1.0000, fp: 0.4750, label 0: tensor(42), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1301 dynamic_size: 10 +filter out voxels: 247 +First batch: fn: 1.0000, fp: 0.4440, label 0: tensor(33), label 1: tensor(157) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1294 dynamic_size: 10 +filter out voxels: 246 +First batch: fn: 1.0000, fp: 0.4362, label 0: tensor(50), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1259 dynamic_size: 10 +filter out voxels: 243 +First batch: fn: 1.0000, fp: 0.3973, label 0: tensor(38), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1253 dynamic_size: 10 +filter out voxels: 238 +First batch: fn: 1.0000, fp: 0.3907, label 0: tensor(32), label 1: tensor(160) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:44.129] dice before refine 0.0 and after 0.0, label 0: tensor(32, device='cuda:0'), label 1: tensor(160, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1964 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:44.504] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(94, device='cuda:0') +num_clicks 10 points_length: 13000 dynamic_size: 10 +filter out voxels: 5576 +First batch: fn: 1.0000, fp: 5.6191, label 0: tensor(440), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11345 dynamic_size: 10 +filter out voxels: 4603 +First batch: fn: 1.0000, fp: 4.7765, label 0: tensor(491), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11172 dynamic_size: 10 +filter out voxels: 4693 +First batch: fn: 1.0000, fp: 4.6884, label 0: tensor(454), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10949 dynamic_size: 10 +filter out voxels: 4686 +First batch: fn: 1.0000, fp: 4.5748, label 0: tensor(463), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10345 dynamic_size: 10 +filter out voxels: 4632 +First batch: fn: 1.0000, fp: 4.2673, label 0: tensor(535), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9367 dynamic_size: 10 +filter out voxels: 4535 +First batch: fn: 1.0000, fp: 3.7693, label 0: tensor(508), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8278 dynamic_size: 10 +filter out voxels: 4466 +First batch: fn: 1.0000, fp: 3.2149, label 0: tensor(230), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8797 dynamic_size: 10 +filter out voxels: 4689 +First batch: fn: 1.0000, fp: 3.4791, label 0: tensor(388), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8033 dynamic_size: 10 +filter out voxels: 4517 +First batch: fn: 1.0000, fp: 3.0901, label 0: tensor(172), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8570 dynamic_size: 10 +filter out voxels: 4711 +First batch: fn: 1.0000, fp: 3.3635, label 0: tensor(312), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:51.038] dice before refine 0.0 and after 0.0, label 0: tensor(312, device='cuda:0'), label 1: tensor(104, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2027 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:51.420] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(152, device='cuda:0') +num_clicks 10 points_length: 7643 dynamic_size: 10 +filter out voxels: 854 +First batch: fn: 1.0000, fp: 2.7706, label 0: tensor(507), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6907 dynamic_size: 10 +filter out voxels: 732 +First batch: fn: 1.0000, fp: 2.4075, label 0: tensor(506), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6484 dynamic_size: 10 +filter out voxels: 761 +First batch: fn: 1.0000, fp: 2.1988, label 0: tensor(503), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5749 dynamic_size: 10 +filter out voxels: 716 +First batch: fn: 1.0000, fp: 1.8362, label 0: tensor(506), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5234 dynamic_size: 10 +filter out voxels: 684 +First batch: fn: 1.0000, fp: 1.5821, label 0: tensor(425), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4806 dynamic_size: 10 +filter out voxels: 631 +First batch: fn: 1.0000, fp: 1.3710, label 0: tensor(436), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4347 dynamic_size: 10 +filter out voxels: 605 +First batch: fn: 1.0000, fp: 1.1445, label 0: tensor(345), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3907 dynamic_size: 10 +filter out voxels: 530 +First batch: fn: 1.0000, fp: 0.9275, label 0: tensor(211), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3870 dynamic_size: 10 +filter out voxels: 510 +First batch: fn: 1.0000, fp: 0.9092, label 0: tensor(133), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4030 dynamic_size: 10 +filter out voxels: 545 +First batch: fn: 1.0000, fp: 0.9882, label 0: tensor(222), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:58.007] dice before refine 0.0 and after 0.0, label 0: tensor(222, device='cuda:0'), label 1: tensor(102, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.0 +[21:37:58.686] epoch: 0/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(482) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:37:59.176] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(482, device='cuda:0') +num_clicks 10 points_length: 25463 dynamic_size: 10 +filter out voxels: 15540 +First batch: fn: 1.0000, fp: 2.4890, label 0: tensor(300), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22577 dynamic_size: 10 +filter out voxels: 13240 +First batch: fn: 1.0000, fp: 2.0936, label 0: tensor(187), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22546 dynamic_size: 10 +filter out voxels: 13303 +First batch: fn: 0.9997, fp: 2.0896, label 0: tensor(263), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22342 dynamic_size: 10 +filter out voxels: 13329 +First batch: fn: 0.9990, fp: 2.0623, label 0: tensor(199), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22504 dynamic_size: 10 +filter out voxels: 13547 +First batch: fn: 0.9984, fp: 2.0852, label 0: tensor(226), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22529 dynamic_size: 10 +filter out voxels: 13670 +First batch: fn: 0.9970, fp: 2.0900, label 0: tensor(258), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22125 dynamic_size: 10 +filter out voxels: 13435 +First batch: fn: 0.9962, fp: 2.0355, label 0: tensor(176), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22472 dynamic_size: 10 +filter out voxels: 13825 +First batch: fn: 0.9911, fp: 2.0881, label 0: tensor(184), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22367 dynamic_size: 10 +filter out voxels: 13799 +First batch: fn: 0.9879, fp: 2.0769, label 0: tensor(187), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22696 dynamic_size: 10 +filter out voxels: 14129 +First batch: fn: 0.9867, fp: 2.1232, label 0: tensor(157), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:07.459] dice before refine 0.0 and after 0.01078427117317915, label 0: tensor(157, device='cuda:0'), label 1: tensor(503, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(458) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:07.903] dice before refine 0.0 and after 0.020714227110147476, label 0: tensor(0, device='cuda:0'), label 1: tensor(458, device='cuda:0') +num_clicks 10 points_length: 23638 dynamic_size: 10 +filter out voxels: 12777 +First batch: fn: 0.9657, fp: 2.2732, label 0: tensor(391), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21002 dynamic_size: 10 +filter out voxels: 10932 +First batch: fn: 0.9607, fp: 1.9171, label 0: tensor(295), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21119 dynamic_size: 10 +filter out voxels: 11290 +First batch: fn: 0.9329, fp: 1.9609, label 0: tensor(348), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20508 dynamic_size: 10 +filter out voxels: 11081 +First batch: fn: 0.9075, fp: 1.9026, label 0: tensor(312), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20427 dynamic_size: 10 +filter out voxels: 11226 +First batch: fn: 0.8882, fp: 1.9108, label 0: tensor(364), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19997 dynamic_size: 10 +filter out voxels: 11117 +First batch: fn: 0.8763, fp: 1.8638, label 0: tensor(314), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19538 dynamic_size: 10 +filter out voxels: 10931 +First batch: fn: 0.8650, fp: 1.8121, label 0: tensor(288), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19736 dynamic_size: 10 +filter out voxels: 11266 +First batch: fn: 0.8537, fp: 1.8506, label 0: tensor(313), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19603 dynamic_size: 10 +filter out voxels: 11229 +First batch: fn: 0.8520, fp: 1.8341, label 0: tensor(331), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19130 dynamic_size: 10 +filter out voxels: 10940 +First batch: fn: 0.8482, fp: 1.7731, label 0: tensor(278), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:16.913] dice before refine 0.0 and after 0.10523897409439087, label 0: tensor(278, device='cuda:0'), label 1: tensor(505, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(336) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:17.334] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(336, device='cuda:0') +num_clicks 10 points_length: 12702 dynamic_size: 10 +filter out voxels: 4664 +First batch: fn: 1.0000, fp: 0.7915, label 0: tensor(132), label 1: tensor(388) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12213 dynamic_size: 10 +filter out voxels: 4289 +First batch: fn: 0.9997, fp: 0.7228, label 0: tensor(181), label 1: tensor(473) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12137 dynamic_size: 10 +filter out voxels: 4289 +First batch: fn: 0.9986, fp: 0.7133, label 0: tensor(172), label 1: tensor(434) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12018 dynamic_size: 10 +filter out voxels: 4238 +First batch: fn: 0.9956, fp: 0.6994, label 0: tensor(100), label 1: tensor(388) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12008 dynamic_size: 10 +filter out voxels: 4291 +First batch: fn: 0.9900, fp: 0.7037, label 0: tensor(122), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12012 dynamic_size: 10 +filter out voxels: 4380 +First batch: fn: 0.9815, fp: 0.7127, label 0: tensor(129), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11907 dynamic_size: 10 +filter out voxels: 4402 +First batch: fn: 0.9669, fp: 0.7126, label 0: tensor(117), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11742 dynamic_size: 10 +filter out voxels: 4402 +First batch: fn: 0.9444, fp: 0.7117, label 0: tensor(119), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11597 dynamic_size: 10 +filter out voxels: 4354 +First batch: fn: 0.9347, fp: 0.7010, label 0: tensor(109), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11510 dynamic_size: 10 +filter out voxels: 4311 +First batch: fn: 0.9315, fp: 0.6920, label 0: tensor(102), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:24.716] dice before refine 0.0 and after 0.07778224349021912, label 0: tensor(102, device='cuda:0'), label 1: tensor(506, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(423) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:25.140] dice before refine 0.0008363535162061453 and after 0.19942976534366608, label 0: tensor(0, device='cuda:0'), label 1: tensor(423, device='cuda:0') +num_clicks 10 points_length: 10389 dynamic_size: 10 +filter out voxels: 3057 +First batch: fn: 0.8175, fp: 0.6478, label 0: tensor(270), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9793 dynamic_size: 10 +filter out voxels: 2744 +First batch: fn: 0.7984, fp: 0.5828, label 0: tensor(242), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9409 dynamic_size: 10 +filter out voxels: 2651 +First batch: fn: 0.7728, fp: 0.5543, label 0: tensor(173), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9356 dynamic_size: 10 +filter out voxels: 2693 +First batch: fn: 0.7643, fp: 0.5553, label 0: tensor(206), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9245 dynamic_size: 10 +filter out voxels: 2673 +First batch: fn: 0.7577, fp: 0.5463, label 0: tensor(210), label 1: tensor(554) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9079 dynamic_size: 10 +filter out voxels: 2685 +First batch: fn: 0.7389, fp: 0.5416, label 0: tensor(221), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8882 dynamic_size: 10 +filter out voxels: 2736 +First batch: fn: 0.7080, fp: 0.5447, label 0: tensor(160), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8717 dynamic_size: 10 +filter out voxels: 2673 +First batch: fn: 0.7006, fp: 0.5289, label 0: tensor(169), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8655 dynamic_size: 10 +filter out voxels: 2712 +First batch: fn: 0.6882, fp: 0.5326, label 0: tensor(193), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8516 dynamic_size: 10 +filter out voxels: 2596 +First batch: fn: 0.6938, fp: 0.5073, label 0: tensor(171), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:33.205] dice before refine 0.0005593623500317335 and after 0.3474556505680084, label 0: tensor(171, device='cuda:0'), label 1: tensor(506, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 36954 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:33.749] dice before refine 0.0002693675342015922 and after 0.047121383249759674, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 46591 dynamic_size: 10 +filter out voxels: 6499 +First batch: fn: 0.9688, fp: 0.2920, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44971 dynamic_size: 10 +filter out voxels: 5652 +First batch: fn: 0.9750, fp: 0.2420, label 0: tensor(503), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44134 dynamic_size: 10 +filter out voxels: 5444 +First batch: fn: 0.9728, fp: 0.2215, label 0: tensor(406), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43806 dynamic_size: 10 +filter out voxels: 5449 +First batch: fn: 0.9694, fp: 0.2160, label 0: tensor(325), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43493 dynamic_size: 10 +filter out voxels: 5421 +First batch: fn: 0.9664, fp: 0.2105, label 0: tensor(415), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43529 dynamic_size: 10 +filter out voxels: 5589 +First batch: fn: 0.9637, fp: 0.2142, label 0: tensor(307), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43178 dynamic_size: 10 +filter out voxels: 5594 +First batch: fn: 0.9574, fp: 0.2111, label 0: tensor(354), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43022 dynamic_size: 10 +filter out voxels: 5534 +First batch: fn: 0.9580, fp: 0.2062, label 0: tensor(359), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42448 dynamic_size: 10 +filter out voxels: 5301 +First batch: fn: 0.9570, fp: 0.1916, label 0: tensor(291), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42567 dynamic_size: 10 +filter out voxels: 5492 +First batch: fn: 0.9529, fp: 0.1990, label 0: tensor(335), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:44.638] dice before refine 5.3998595831217244e-05 and after 0.07831805944442749, label 0: tensor(335, device='cuda:0'), label 1: tensor(508, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 35104 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:45.174] dice before refine 5.681818220182322e-05 and after 0.01607510820031166, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 42968 dynamic_size: 10 +filter out voxels: 3981 +First batch: fn: 0.9900, fp: 0.2340, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41135 dynamic_size: 10 +filter out voxels: 3162 +First batch: fn: 0.9901, fp: 0.1817, label 0: tensor(546), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40438 dynamic_size: 10 +filter out voxels: 2986 +First batch: fn: 0.9895, fp: 0.1624, label 0: tensor(445), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40584 dynamic_size: 10 +filter out voxels: 3166 +First batch: fn: 0.9884, fp: 0.1677, label 0: tensor(350), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40629 dynamic_size: 10 +filter out voxels: 3243 +First batch: fn: 0.9874, fp: 0.1700, label 0: tensor(378), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40127 dynamic_size: 10 +filter out voxels: 3150 +First batch: fn: 0.9856, fp: 0.1575, label 0: tensor(383), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40031 dynamic_size: 10 +filter out voxels: 3155 +First batch: fn: 0.9844, fp: 0.1560, label 0: tensor(264), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40023 dynamic_size: 10 +filter out voxels: 3215 +First batch: fn: 0.9830, fp: 0.1571, label 0: tensor(392), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39601 dynamic_size: 10 +filter out voxels: 3115 +First batch: fn: 0.9807, fp: 0.1474, label 0: tensor(364), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39431 dynamic_size: 10 +filter out voxels: 3076 +First batch: fn: 0.9799, fp: 0.1433, label 0: tensor(333), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:56.046] dice before refine 5.6882821809267625e-05 and after 0.03483671694993973, label 0: tensor(333, device='cuda:0'), label 1: tensor(508, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26886 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:38:56.575] dice before refine 7.419223402393982e-05 and after 0.008586850017309189, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 32328 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.9948, fp: 0.2076, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30575 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.9958, fp: 0.1414, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30715 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.9951, fp: 0.1474, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30423 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.9945, fp: 0.1371, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29900 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.9939, fp: 0.1182, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29296 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.9905, fp: 0.0991, label 0: tensor(475), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29237 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9893, fp: 0.0981, label 0: tensor(399), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29091 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9886, fp: 0.0934, label 0: tensor(401), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28820 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9862, fp: 0.0857, label 0: tensor(455), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28751 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9859, fp: 0.0834, label 0: tensor(447), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:07.976] dice before refine 0.0 and after 0.02824566885828972, label 0: tensor(447, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:08.504] dice before refine 0.0 and after 0.014310820959508419, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 31408 dynamic_size: 10 +filter out voxels: 79 +First batch: fn: 0.9913, fp: 0.2051, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30336 dynamic_size: 10 +filter out voxels: 32 +First batch: fn: 0.9920, fp: 0.1636, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29556 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.9893, fp: 0.1365, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29544 dynamic_size: 10 +filter out voxels: 20 +First batch: fn: 0.9872, fp: 0.1382, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29171 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.9855, fp: 0.1257, label 0: tensor(529), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28850 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.9850, fp: 0.1140, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28841 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.9829, fp: 0.1157, label 0: tensor(527), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28876 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.9813, fp: 0.1187, label 0: tensor(519), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28428 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.9802, fp: 0.1027, label 0: tensor(398), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28542 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.9792, fp: 0.1080, label 0: tensor(550), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:20.206] dice before refine 0.0 and after 0.044880203902721405, label 0: tensor(550, device='cuda:0'), label 1: tensor(509, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.028557270595973187 +[21:39:20.797] epoch: 0/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.028557270595973187 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:21.315] dice before refine 0.0018885741010308266 and after 0.00035631569335237145, label 0: tensor(0, device='cuda:0'), label 1: tensor(113, device='cuda:0') +num_clicks 10 points_length: 5611 dynamic_size: 10 +filter out voxels: 2476 +First batch: fn: 0.9997, fp: 0.7895, label 0: tensor(5), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5406 dynamic_size: 10 +filter out voxels: 2290 +First batch: fn: 0.9936, fp: 0.7302, label 0: tensor(5), label 1: tensor(194) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5390 dynamic_size: 10 +filter out voxels: 2308 +First batch: fn: 0.9828, fp: 0.7360, label 0: tensor(5), label 1: tensor(367) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5234 dynamic_size: 10 +filter out voxels: 2320 +First batch: fn: 0.9292, fp: 0.7398, label 0: tensor(6), label 1: tensor(378) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5076 dynamic_size: 10 +filter out voxels: 2303 +First batch: fn: 0.8842, fp: 0.7344, label 0: tensor(4), label 1: tensor(317) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5014 dynamic_size: 10 +filter out voxels: 2306 +First batch: fn: 0.8635, fp: 0.7353, label 0: tensor(6), label 1: tensor(441) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4910 dynamic_size: 10 +filter out voxels: 2302 +First batch: fn: 0.8316, fp: 0.7341, label 0: tensor(6), label 1: tensor(463) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4827 dynamic_size: 10 +filter out voxels: 2308 +First batch: fn: 0.8029, fp: 0.7363, label 0: tensor(7), label 1: tensor(278) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4801 dynamic_size: 10 +filter out voxels: 2285 +First batch: fn: 0.8023, fp: 0.7286, label 0: tensor(5), label 1: tensor(479) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4770 dynamic_size: 10 +filter out voxels: 2312 +First batch: fn: 0.7838, fp: 0.7372, label 0: tensor(6), label 1: tensor(397) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:26.217] dice before refine 0.0012618296314030886 and after 0.21877044439315796, label 0: tensor(6, device='cuda:0'), label 1: tensor(397, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:26.599] dice before refine 0.013174404390156269 and after 0.2222222238779068, label 0: tensor(0, device='cuda:0'), label 1: tensor(139, device='cuda:0') +num_clicks 10 points_length: 4445 dynamic_size: 10 +filter out voxels: 1944 +First batch: fn: 0.7975, fp: 0.6199, label 0: tensor(4), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4040 dynamic_size: 10 +filter out voxels: 1928 +First batch: fn: 0.6728, fp: 0.6154, label 0: tensor(5), label 1: tensor(344) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3884 dynamic_size: 10 +filter out voxels: 1878 +First batch: fn: 0.6390, fp: 0.5995, label 0: tensor(5), label 1: tensor(420) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3811 dynamic_size: 10 +filter out voxels: 1935 +First batch: fn: 0.5973, fp: 0.6180, label 0: tensor(11), label 1: tensor(230) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3714 dynamic_size: 10 +filter out voxels: 1863 +First batch: fn: 0.5896, fp: 0.5947, label 0: tensor(8), label 1: tensor(432) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3713 dynamic_size: 10 +filter out voxels: 1934 +First batch: fn: 0.5660, fp: 0.6180, label 0: tensor(8), label 1: tensor(355) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3645 dynamic_size: 10 +filter out voxels: 1904 +First batch: fn: 0.5539, fp: 0.6084, label 0: tensor(8), label 1: tensor(280) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3591 dynamic_size: 10 +filter out voxels: 1853 +First batch: fn: 0.5533, fp: 0.5918, label 0: tensor(6), label 1: tensor(393) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3609 dynamic_size: 10 +filter out voxels: 1897 +First batch: fn: 0.5446, fp: 0.6062, label 0: tensor(10), label 1: tensor(349) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3545 dynamic_size: 10 +filter out voxels: 1843 +First batch: fn: 0.5418, fp: 0.5886, label 0: tensor(8), label 1: tensor(319) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:31.908] dice before refine 0.013182674534618855 and after 0.4482811689376831, label 0: tensor(8, device='cuda:0'), label 1: tensor(319, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:32.290] dice before refine 0.002541295951232314 and after 0.058986175805330276, label 0: tensor(0, device='cuda:0'), label 1: tensor(174, device='cuda:0') +num_clicks 10 points_length: 3063 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.9694, fp: 0.0073, label 0: tensor(0), label 1: tensor(327) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2949 dynamic_size: 10 +filter out voxels: 29 +First batch: fn: 0.9311, fp: 0.0092, label 0: tensor(0), label 1: tensor(382) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2753 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.8689, fp: 0.0089, label 0: tensor(0), label 1: tensor(418) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2509 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.7908, fp: 0.0092, label 0: tensor(2), label 1: tensor(337) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2409 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.7596, fp: 0.0086, label 0: tensor(0), label 1: tensor(400) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2315 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.7296, fp: 0.0086, label 0: tensor(0), label 1: tensor(307) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2266 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.7140, fp: 0.0086, label 0: tensor(0), label 1: tensor(368) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2182 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.6869, fp: 0.0089, label 0: tensor(1), label 1: tensor(457) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2135 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.6716, fp: 0.0092, label 0: tensor(2), label 1: tensor(438) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2148 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.6760, fp: 0.0089, label 0: tensor(1), label 1: tensor(281) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:37.518] dice before refine 0.0031746032182127237 and after 0.4885386824607849, label 0: tensor(1, device='cuda:0'), label 1: tensor(281, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:37.900] dice before refine 0.008199306204915047 and after 0.22797131538391113, label 0: tensor(0, device='cuda:0'), label 1: tensor(127, device='cuda:0') +num_clicks 10 points_length: 3014 dynamic_size: 10 +filter out voxels: 323 +First batch: fn: 0.8581, fp: 0.1030, label 0: tensor(0), label 1: tensor(371) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2784 dynamic_size: 10 +filter out voxels: 324 +First batch: fn: 0.7841, fp: 0.1036, label 0: tensor(1), label 1: tensor(448) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2600 dynamic_size: 10 +filter out voxels: 327 +First batch: fn: 0.7245, fp: 0.1046, label 0: tensor(1), label 1: tensor(468) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2433 dynamic_size: 10 +filter out voxels: 333 +First batch: fn: 0.6693, fp: 0.1065, label 0: tensor(2), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2306 dynamic_size: 10 +filter out voxels: 355 +First batch: fn: 0.6218, fp: 0.1135, label 0: tensor(3), label 1: tensor(391) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2282 dynamic_size: 10 +filter out voxels: 351 +First batch: fn: 0.6154, fp: 0.1122, label 0: tensor(2), label 1: tensor(483) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2161 dynamic_size: 10 +filter out voxels: 329 +First batch: fn: 0.5842, fp: 0.1049, label 0: tensor(2), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2135 dynamic_size: 10 +filter out voxels: 353 +First batch: fn: 0.5682, fp: 0.1126, label 0: tensor(3), label 1: tensor(331) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2088 dynamic_size: 10 +filter out voxels: 324 +First batch: fn: 0.5622, fp: 0.1036, label 0: tensor(3), label 1: tensor(354) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2104 dynamic_size: 10 +filter out voxels: 354 +First batch: fn: 0.5580, fp: 0.1129, label 0: tensor(0), label 1: tensor(307) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:43.484] dice before refine 0.008824456483125687 and after 0.5757325887680054, label 0: tensor(0, device='cuda:0'), label 1: tensor(307, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.2919971617785367 +[21:39:43.937] epoch: 0/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.2919971617785367 stich left and right side (total size): 1 +num_clicks 10 points_length: 19676 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:44.481] dice before refine 0.000302236556308344 and after 0.028667518869042397, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 54009 dynamic_size: 10 +filter out voxels: 33090 +First batch: fn: 0.9595, fp: 1.7854, label 0: tensor(249), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48665 dynamic_size: 10 +filter out voxels: 28048 +First batch: fn: 0.9620, fp: 1.5113, label 0: tensor(220), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48765 dynamic_size: 10 +filter out voxels: 28579 +First batch: fn: 0.9439, fp: 1.5345, label 0: tensor(251), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47551 dynamic_size: 10 +filter out voxels: 27526 +First batch: fn: 0.9419, fp: 1.4748, label 0: tensor(235), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48713 dynamic_size: 10 +filter out voxels: 28956 +First batch: fn: 0.9297, fp: 1.5461, label 0: tensor(196), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48836 dynamic_size: 10 +filter out voxels: 29249 +First batch: fn: 0.9242, fp: 1.5578, label 0: tensor(298), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47214 dynamic_size: 10 +filter out voxels: 27903 +First batch: fn: 0.9215, fp: 1.4780, label 0: tensor(215), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46712 dynamic_size: 10 +filter out voxels: 27574 +First batch: fn: 0.9143, fp: 1.4597, label 0: tensor(207), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46888 dynamic_size: 10 +filter out voxels: 27988 +First batch: fn: 0.9050, fp: 1.4780, label 0: tensor(224), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47723 dynamic_size: 10 +filter out voxels: 28940 +First batch: fn: 0.9001, fp: 1.5253, label 0: tensor(228), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:53.350] dice before refine 0.00030295379110611975 and after 0.07540111988782883, label 0: tensor(228, device='cuda:0'), label 1: tensor(504, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 30548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:39:53.851] dice before refine 0.00032601962448097765 and after 0.04785635322332382, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 50058 dynamic_size: 10 +filter out voxels: 18629 +First batch: fn: 0.9588, fp: 0.6798, label 0: tensor(295), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47496 dynamic_size: 10 +filter out voxels: 16211 +First batch: fn: 0.9629, fp: 0.5919, label 0: tensor(230), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47666 dynamic_size: 10 +filter out voxels: 16540 +First batch: fn: 0.9594, fp: 0.6009, label 0: tensor(280), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47758 dynamic_size: 10 +filter out voxels: 16796 +First batch: fn: 0.9565, fp: 0.6069, label 0: tensor(225), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47121 dynamic_size: 10 +filter out voxels: 16447 +First batch: fn: 0.9516, fp: 0.5909, label 0: tensor(285), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47066 dynamic_size: 10 +filter out voxels: 16649 +First batch: fn: 0.9464, fp: 0.5943, label 0: tensor(273), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46888 dynamic_size: 10 +filter out voxels: 16718 +First batch: fn: 0.9418, fp: 0.5931, label 0: tensor(233), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46712 dynamic_size: 10 +filter out voxels: 16636 +First batch: fn: 0.9398, fp: 0.5893, label 0: tensor(261), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46259 dynamic_size: 10 +filter out voxels: 16312 +First batch: fn: 0.9394, fp: 0.5749, label 0: tensor(269), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46346 dynamic_size: 10 +filter out voxels: 16654 +First batch: fn: 0.9310, fp: 0.5861, label 0: tensor(263), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:40:03.182] dice before refine 0.0002611733216326684 and after 0.08644517511129379, label 0: tensor(263, device='cuda:0'), label 1: tensor(509, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 23425 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:40:03.643] dice before refine 0.015483114868402481 and after 0.48169299960136414, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 24957 dynamic_size: 10 +filter out voxels: 4353 +First batch: fn: 0.5049, fp: 0.5605, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23243 dynamic_size: 10 +filter out voxels: 3354 +First batch: fn: 0.5312, fp: 0.4610, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22876 dynamic_size: 10 +filter out voxels: 3481 +First batch: fn: 0.5092, fp: 0.4673, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22227 dynamic_size: 10 +filter out voxels: 3457 +First batch: fn: 0.4946, fp: 0.4543, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21590 dynamic_size: 10 +filter out voxels: 3304 +First batch: fn: 0.4873, fp: 0.4344, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21294 dynamic_size: 10 +filter out voxels: 3354 +First batch: fn: 0.4805, fp: 0.4285, label 0: tensor(511), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20948 dynamic_size: 10 +filter out voxels: 3371 +First batch: fn: 0.4724, fp: 0.4219, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20490 dynamic_size: 10 +filter out voxels: 3280 +First batch: fn: 0.4723, fp: 0.4024, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20076 dynamic_size: 10 +filter out voxels: 3263 +First batch: fn: 0.4681, fp: 0.3889, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19439 dynamic_size: 10 +filter out voxels: 3331 +First batch: fn: 0.4556, fp: 0.3742, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:40:13.892] dice before refine 0.005254682619124651 and after 0.5739263296127319, label 0: tensor(505, device='cuda:0'), label 1: tensor(505, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25823 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:40:14.368] dice before refine 0.02493993751704693 and after 0.5771890878677368, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 19440 dynamic_size: 10 +filter out voxels: 1025 +First batch: fn: 0.4862, fp: 0.2667, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18523 dynamic_size: 10 +filter out voxels: 869 +First batch: fn: 0.4906, fp: 0.2267, label 0: tensor(514), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17589 dynamic_size: 10 +filter out voxels: 724 +First batch: fn: 0.4886, fp: 0.1925, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17298 dynamic_size: 10 +filter out voxels: 815 +First batch: fn: 0.4742, fp: 0.1957, label 0: tensor(497), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16922 dynamic_size: 10 +filter out voxels: 786 +First batch: fn: 0.4728, fp: 0.1825, label 0: tensor(509), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16225 dynamic_size: 10 +filter out voxels: 663 +First batch: fn: 0.4698, fp: 0.1585, label 0: tensor(530), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16066 dynamic_size: 10 +filter out voxels: 777 +First batch: fn: 0.4556, fp: 0.1666, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15254 dynamic_size: 10 +filter out voxels: 706 +First batch: fn: 0.4497, fp: 0.1410, label 0: tensor(475), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15081 dynamic_size: 10 +filter out voxels: 747 +First batch: fn: 0.4408, fp: 0.1432, label 0: tensor(398), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14591 dynamic_size: 10 +filter out voxels: 687 +First batch: fn: 0.4374, fp: 0.1276, label 0: tensor(474), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:40:24.847] dice before refine 0.012753534130752087 and after 0.671230673789978, label 0: tensor(474, device='cuda:0'), label 1: tensor(507, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 69252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:40:25.427] dice before refine 0.0010375387500971556 and after 0.06997781991958618, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 95610 dynamic_size: 10 +filter out voxels: 6265 +First batch: fn: 0.9481, fp: 0.4326, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 87458 dynamic_size: 10 +filter out voxels: 4470 +First batch: fn: 0.9653, fp: 0.2976, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 88622 dynamic_size: 10 +filter out voxels: 4998 +First batch: fn: 0.9537, fp: 0.3260, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 88334 dynamic_size: 10 +filter out voxels: 5090 +First batch: fn: 0.9500, fp: 0.3256, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 87470 dynamic_size: 10 +filter out voxels: 5093 +First batch: fn: 0.9462, fp: 0.3169, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 86082 dynamic_size: 10 +filter out voxels: 5027 +First batch: fn: 0.9430, fp: 0.3000, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 85675 dynamic_size: 10 +filter out voxels: 5166 +First batch: fn: 0.9376, fp: 0.2995, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 82748 dynamic_size: 10 +filter out voxels: 4723 +First batch: fn: 0.9438, fp: 0.2511, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 83986 dynamic_size: 10 +filter out voxels: 5318 +First batch: fn: 0.9281, fp: 0.2846, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 81241 dynamic_size: 10 +filter out voxels: 4864 +First batch: fn: 0.9338, fp: 0.2393, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:40:37.786] dice before refine 0.0006924608605913818 and after 0.11106137931346893, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 92139 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:40:38.396] dice before refine 0.0014959349064156413 and after 0.11465582251548767, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 95549 dynamic_size: 10 +filter out voxels: 5459 +First batch: fn: 0.9329, fp: 0.1042, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 93967 dynamic_size: 10 +filter out voxels: 4371 +First batch: fn: 0.9441, fp: 0.0757, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 93173 dynamic_size: 10 +filter out voxels: 4363 +First batch: fn: 0.9401, fp: 0.0711, label 0: tensor(425), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 92658 dynamic_size: 10 +filter out voxels: 4679 +First batch: fn: 0.9299, fp: 0.0757, label 0: tensor(323), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 92246 dynamic_size: 10 +filter out voxels: 4285 +First batch: fn: 0.9348, fp: 0.0664, label 0: tensor(353), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91616 dynamic_size: 10 +filter out voxels: 4850 +First batch: fn: 0.9173, fp: 0.0770, label 0: tensor(423), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91231 dynamic_size: 10 +filter out voxels: 4229 +First batch: fn: 0.9272, fp: 0.0629, label 0: tensor(333), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91069 dynamic_size: 10 +filter out voxels: 4605 +First batch: fn: 0.9186, fp: 0.0698, label 0: tensor(341), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 90749 dynamic_size: 10 +filter out voxels: 4386 +First batch: fn: 0.9200, fp: 0.0649, label 0: tensor(344), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 90318 dynamic_size: 10 +filter out voxels: 4369 +First batch: fn: 0.9164, fp: 0.0639, label 0: tensor(342), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:40:49.982] dice before refine 0.0009327650186605752 and after 0.1443548947572708, label 0: tensor(342, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 10350 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:40:50.431] dice before refine 0.0009462528396397829 and after 0.08038022369146347, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 22058 dynamic_size: 10 +filter out voxels: 4284 +First batch: fn: 0.9069, fp: 1.2243, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19641 dynamic_size: 10 +filter out voxels: 3294 +First batch: fn: 0.9037, fp: 0.9940, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18926 dynamic_size: 10 +filter out voxels: 3350 +First batch: fn: 0.8818, fp: 0.9468, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17794 dynamic_size: 10 +filter out voxels: 3127 +First batch: fn: 0.8783, fp: 0.8410, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17792 dynamic_size: 10 +filter out voxels: 3408 +First batch: fn: 0.8666, fp: 0.8525, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16407 dynamic_size: 10 +filter out voxels: 3072 +First batch: fn: 0.8636, fp: 0.7216, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15807 dynamic_size: 10 +filter out voxels: 3053 +First batch: fn: 0.8599, fp: 0.6673, label 0: tensor(544), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15555 dynamic_size: 10 +filter out voxels: 3209 +First batch: fn: 0.8512, fp: 0.6517, label 0: tensor(515), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15498 dynamic_size: 10 +filter out voxels: 3422 +First batch: fn: 0.8450, fp: 0.6524, label 0: tensor(386), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15044 dynamic_size: 10 +filter out voxels: 3319 +First batch: fn: 0.8425, fp: 0.6110, label 0: tensor(419), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:41:00.726] dice before refine 0.00019056693417951465 and after 0.1852818727493286, label 0: tensor(419, device='cuda:0'), label 1: tensor(506, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 9566 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:41:01.181] dice before refine 0.0033195021096616983 and after 0.14563831686973572, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 14877 dynamic_size: 10 +filter out voxels: 5805 +First batch: fn: 0.8674, fp: 0.6877, label 0: tensor(102), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14254 dynamic_size: 10 +filter out voxels: 5317 +First batch: fn: 0.8625, fp: 0.6275, label 0: tensor(87), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14113 dynamic_size: 10 +filter out voxels: 5340 +First batch: fn: 0.8500, fp: 0.6253, label 0: tensor(129), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13897 dynamic_size: 10 +filter out voxels: 5247 +First batch: fn: 0.8464, fp: 0.6063, label 0: tensor(74), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14121 dynamic_size: 10 +filter out voxels: 5604 +First batch: fn: 0.8314, fp: 0.6448, label 0: tensor(107), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13729 dynamic_size: 10 +filter out voxels: 5306 +First batch: fn: 0.8310, fp: 0.6042, label 0: tensor(118), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13547 dynamic_size: 10 +filter out voxels: 5217 +First batch: fn: 0.8267, fp: 0.5895, label 0: tensor(69), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13627 dynamic_size: 10 +filter out voxels: 5366 +First batch: fn: 0.8181, fp: 0.6064, label 0: tensor(74), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13542 dynamic_size: 10 +filter out voxels: 5331 +First batch: fn: 0.8171, fp: 0.5986, label 0: tensor(87), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13491 dynamic_size: 10 +filter out voxels: 5340 +First batch: fn: 0.8125, fp: 0.5978, label 0: tensor(82), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:41:08.395] dice before refine 0.0029069767333567142 and after 0.21290284395217896, label 0: tensor(82, device='cuda:0'), label 1: tensor(504, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.22139538011767648 +[21:41:08.950] epoch: 0/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.22139538011767648 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:41:09.470] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(20, device='cuda:0') +num_clicks 10 points_length: 14460 dynamic_size: 10 +filter out voxels: 14332 +First batch: fn: 1.0000, fp: 111.9688, label 0: tensor(10), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13712 dynamic_size: 10 +filter out voxels: 13584 +First batch: fn: 1.0000, fp: 106.1250, label 0: tensor(10), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13736 dynamic_size: 10 +filter out voxels: 13608 +First batch: fn: 1.0000, fp: 106.3125, label 0: tensor(10), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13445 dynamic_size: 10 +filter out voxels: 13317 +First batch: fn: 1.0000, fp: 104.0391, label 0: tensor(10), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13583 dynamic_size: 10 +filter out voxels: 13455 +First batch: fn: 1.0000, fp: 105.1172, label 0: tensor(10), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13705 dynamic_size: 10 +filter out voxels: 13577 +First batch: fn: 1.0000, fp: 106.0703, label 0: tensor(10), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13383 dynamic_size: 10 +filter out voxels: 13255 +First batch: fn: 1.0000, fp: 103.5547, label 0: tensor(10), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13779 dynamic_size: 10 +filter out voxels: 13651 +First batch: fn: 1.0000, fp: 106.6484, label 0: tensor(10), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13810 dynamic_size: 10 +filter out voxels: 13682 +First batch: fn: 1.0000, fp: 106.8906, label 0: tensor(10), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13810 dynamic_size: 10 +filter out voxels: 13682 +First batch: fn: 1.0000, fp: 106.8906, label 0: tensor(10), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:41:12.470] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(25, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:41:12.823] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(28, device='cuda:0') +num_clicks 10 points_length: 7567 dynamic_size: 10 +filter out voxels: 7439 +First batch: fn: 1.0000, fp: 58.1172, label 0: tensor(10), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7251 dynamic_size: 10 +filter out voxels: 7123 +First batch: fn: 1.0000, fp: 55.6484, label 0: tensor(10), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7202 dynamic_size: 10 +filter out voxels: 7074 +First batch: fn: 1.0000, fp: 55.2656, label 0: tensor(10), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7378 dynamic_size: 10 +filter out voxels: 7250 +First batch: fn: 1.0000, fp: 56.6406, label 0: tensor(9), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7162 dynamic_size: 10 +filter out voxels: 7034 +First batch: fn: 1.0000, fp: 54.9531, label 0: tensor(10), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7281 dynamic_size: 10 +filter out voxels: 7153 +First batch: fn: 1.0000, fp: 55.8828, label 0: tensor(10), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8205 dynamic_size: 10 +filter out voxels: 8077 +First batch: fn: 1.0000, fp: 63.1016, label 0: tensor(10), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7209 dynamic_size: 10 +filter out voxels: 7081 +First batch: fn: 1.0000, fp: 55.3203, label 0: tensor(10), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7112 dynamic_size: 10 +filter out voxels: 6984 +First batch: fn: 1.0000, fp: 54.5625, label 0: tensor(10), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8030 dynamic_size: 10 +filter out voxels: 7902 +First batch: fn: 1.0000, fp: 61.7344, label 0: tensor(9), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:41:15.771] dice before refine 0.0 and after 0.0, label 0: tensor(9, device='cuda:0'), label 1: tensor(22, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.0 +[21:41:16.385] epoch: 0/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +[21:41:16.386] - Val metrics mean dice: 0.12668530324179092 +Checkpoint Directory exists! +[21:41:17.015] - Val metrics best mean dice: 0.12668530324179092 at epoch 0 +num_clicks 50 points_length: 1632 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(195) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012613015715032816 and after 0.06799832731485367 +num_clicks 50 points_length: 56506 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 54874 +First batch: fn: 0.9270, fp: 0.0001, label 0: tensor(0), label 1: tensor(238) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0010611455654725432 and after 0.06778374314308167 +num_clicks 50 points_length: 55993 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 54361 +First batch: fn: 0.9273, fp: 0.0001, label 0: tensor(0), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012613164726644754 and after 0.07106443494558334 +num_clicks 50 points_length: 56334 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 54702 +First batch: fn: 0.9235, fp: 0.0001, label 0: tensor(0), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001190672628581524 and after 0.06698306649923325 +num_clicks 50 points_length: 55300 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 53668 +First batch: fn: 0.9282, fp: 0.0001, label 0: tensor(0), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012966193025931716 and after 0.07527092844247818 +num_clicks 50 points_length: 56196 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 54564 +First batch: fn: 0.9186, fp: 0.0001, label 0: tensor(0), label 1: tensor(158) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0010493550216779113 and after 0.07623958587646484 +num_clicks 50 points_length: 54607 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 52975 +First batch: fn: 0.9175, fp: 0.0001, label 0: tensor(0), label 1: tensor(171) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0010611331090331078 and after 0.07811904698610306 +num_clicks 50 points_length: 55339 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 53707 +First batch: fn: 0.9153, fp: 0.0001, label 0: tensor(0), label 1: tensor(184) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0010964653920382261 and after 0.07604902982711792 +num_clicks 50 points_length: 56254 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 54622 +First batch: fn: 0.9177, fp: 0.0001, label 0: tensor(0), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0012142217019572854 and after 0.0814569890499115 +num_clicks 50 points_length: 54916 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 53284 +First batch: fn: 0.9113, fp: 0.0001, label 0: tensor(0), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001190672628581524 and after 0.07838978618383408 +num_clicks 50 points_length: 55576 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 53944 +First batch: fn: 0.9149, fp: 0.0001, label 0: tensor(0), label 1: tensor(195) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0010846882360056043 and after 0.08114819973707199 +epoch: 1/20, iter: 0/42: loss:3.7377: rank:-1 +[21:41:40.236] epoch: 1/20, iter: 0/42: loss:3.7377: rank:-1 +num_clicks 50 points_length: 374 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.008860645815730095 and after 0.11963853240013123 +num_clicks 50 points_length: 6835 dynamic_size: 39 +filter out voxels: 6446 +filter out voxels: 8639 +First batch: fn: 0.9545, fp: 17.3209, label 0: tensor(45), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.009834599681198597 and after 0.12649005651474 +num_clicks 50 points_length: 4725 dynamic_size: 15 +filter out voxels: 4353 +filter out voxels: 8480 +First batch: fn: 0.9733, fp: 11.6604, label 0: tensor(17), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.007003681268543005 and after 0.13500255346298218 +num_clicks 50 points_length: 5688 dynamic_size: 34 +filter out voxels: 5355 +filter out voxels: 7516 +First batch: fn: 0.8422, fp: 14.3663, label 0: tensor(39), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.010178571566939354 and after 0.14282383024692535 +num_clicks 50 points_length: 4782 dynamic_size: 12 +filter out voxels: 4463 +filter out voxels: 8690 +First batch: fn: 0.8316, fp: 11.9545, label 0: tensor(18), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.006382596213370562 and after 0.1470012217760086 +num_clicks 50 points_length: 5421 dynamic_size: 48 +filter out voxels: 5133 +filter out voxels: 7447 +First batch: fn: 0.7460, fp: 13.7487, label 0: tensor(51), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.008245944045484066 and after 0.15347081422805786 +num_clicks 50 points_length: 4339 dynamic_size: 11 +filter out voxels: 4051 +filter out voxels: 7835 +First batch: fn: 0.7567, fp: 10.8449, label 0: tensor(11), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.010003572329878807 and after 0.15517666935920715 +num_clicks 50 points_length: 5559 dynamic_size: 49 +filter out voxels: 5294 +filter out voxels: 8803 +First batch: fn: 0.6845, fp: 14.1791, label 0: tensor(56), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0094837611541152 and after 0.16322539746761322 +num_clicks 50 points_length: 4647 dynamic_size: 50 +filter out voxels: 4381 +filter out voxels: 8319 +First batch: fn: 0.6898, fp: 11.7353, label 0: tensor(49), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.007268485147505999 and after 0.16757966578006744 +num_clicks 50 points_length: 4124 dynamic_size: 49 +filter out voxels: 3862 +filter out voxels: 7490 +First batch: fn: 0.6845, fp: 10.3422, label 0: tensor(50), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01009469386190176 and after 0.1682511866092682 +num_clicks 50 points_length: 4702 dynamic_size: 17 +filter out voxels: 4447 +filter out voxels: 8556 +First batch: fn: 0.6604, fp: 11.9118, label 0: tensor(21), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.007181328721344471 and after 0.169187530875206 +epoch: 1/20, iter: 1/42: loss:4.1152: rank:-1 +[21:41:50.081] epoch: 1/20, iter: 1/42: loss:4.1152: rank:-1 +num_clicks 50 points_length: 821 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0003125488292425871 and after 0.011922013014554977 +num_clicks 50 points_length: 5970 dynamic_size: 17 +filter out voxels: 23542 +filter out voxels: 4661 +First batch: fn: 0.9409, fp: 3.8943, label 0: tensor(14), label 1: tensor(194) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004674353403970599 and after 0.013315209187567234 +num_clicks 50 points_length: 5342 dynamic_size: 47 +filter out voxels: 23154 +filter out voxels: 4124 +First batch: fn: 0.9367, fp: 3.8277, label 0: tensor(37), label 1: tensor(189) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004691898648161441 and after 0.015706924721598625 +num_clicks 50 points_length: 5352 dynamic_size: 11 +filter out voxels: 22736 +filter out voxels: 4164 +First batch: fn: 0.9277, fp: 3.7582, label 0: tensor(9), label 1: tensor(218) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00046533270506188273 and after 0.017650477588176727 +num_clicks 50 points_length: 5307 dynamic_size: 17 +filter out voxels: 23737 +filter out voxels: 4164 +First batch: fn: 0.9163, fp: 3.9245, label 0: tensor(15), label 1: tensor(195) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004650441696867347 and after 0.01953478343784809 +num_clicks 50 points_length: 5233 dynamic_size: 7 +filter out voxels: 23703 +filter out voxels: 4116 +First batch: fn: 0.9098, fp: 3.9186, label 0: tensor(7), label 1: tensor(206) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0006191950524225831 and after 0.022073891013860703 +num_clicks 50 points_length: 5327 dynamic_size: 18 +filter out voxels: 23786 +filter out voxels: 4211 +First batch: fn: 0.9011, fp: 3.9333, label 0: tensor(14), label 1: tensor(219) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0006179515039548278 and after 0.023830939084291458 +num_clicks 50 points_length: 5261 dynamic_size: 16 +filter out voxels: 23900 +filter out voxels: 4157 +First batch: fn: 0.8938, fp: 3.9519, label 0: tensor(15), label 1: tensor(194) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004652605566661805 and after 0.02524818666279316 +num_clicks 50 points_length: 5253 dynamic_size: 18 +filter out voxels: 23512 +filter out voxels: 4156 +First batch: fn: 0.8909, fp: 3.8868, label 0: tensor(14), label 1: tensor(185) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004675810341723263 and after 0.026359673589468002 +num_clicks 50 points_length: 5213 dynamic_size: 38 +filter out voxels: 23242 +filter out voxels: 4135 +First batch: fn: 0.8892, fp: 3.8423, label 0: tensor(30), label 1: tensor(198) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00046736252261325717 and after 0.027618926018476486 +num_clicks 50 points_length: 5187 dynamic_size: 21 +filter out voxels: 23422 +filter out voxels: 4108 +First batch: fn: 0.8832, fp: 3.8719, label 0: tensor(19), label 1: tensor(223) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00046670815208926797 and after 0.028622856363654137 +epoch: 1/20, iter: 2/42: loss:4.3866: rank:-1 +[21:42:02.097] epoch: 1/20, iter: 2/42: loss:4.3866: rank:-1 +num_clicks 50 points_length: 26477 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01037595421075821 and after 0.26128774881362915 +num_clicks 50 points_length: 26378 dynamic_size: 4 +filter out voxels: 1206 +filter out voxels: 0 +First batch: fn: 0.6594, fp: 0.0416, label 0: tensor(48), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.010630171746015549 and after 0.2650565803050995 +num_clicks 50 points_length: 26268 dynamic_size: 35 +filter out voxels: 1185 +filter out voxels: 0 +First batch: fn: 0.6593, fp: 0.0399, label 0: tensor(53), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.009959562681615353 and after 0.26496878266334534 +num_clicks 50 points_length: 26216 dynamic_size: 16 +filter out voxels: 1156 +filter out voxels: 0 +First batch: fn: 0.6597, fp: 0.0390, label 0: tensor(56), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01168343797326088 and after 0.2674553394317627 +num_clicks 50 points_length: 26206 dynamic_size: 7 +filter out voxels: 1187 +filter out voxels: 0 +First batch: fn: 0.6544, fp: 0.0391, label 0: tensor(66), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.011909534223377705 and after 0.26852115988731384 +num_clicks 50 points_length: 26202 dynamic_size: 34 +filter out voxels: 1192 +filter out voxels: 0 +First batch: fn: 0.6520, fp: 0.0386, label 0: tensor(66), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01081314031034708 and after 0.268194317817688 +num_clicks 50 points_length: 26197 dynamic_size: 13 +filter out voxels: 1159 +filter out voxels: 0 +First batch: fn: 0.6527, fp: 0.0376, label 0: tensor(49), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.011366385035216808 and after 0.2709568440914154 +num_clicks 50 points_length: 26175 dynamic_size: 16 +filter out voxels: 1165 +filter out voxels: 0 +First batch: fn: 0.6486, fp: 0.0373, label 0: tensor(54), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.011635088361799717 and after 0.27530890703201294 +num_clicks 50 points_length: 26110 dynamic_size: 44 +filter out voxels: 1175 +filter out voxels: 0 +First batch: fn: 0.6454, fp: 0.0372, label 0: tensor(60), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.012461422942578793 and after 0.277970552444458 +num_clicks 50 points_length: 26078 dynamic_size: 12 +filter out voxels: 1202 +filter out voxels: 0 +First batch: fn: 0.6422, fp: 0.0374, label 0: tensor(53), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.010713513009250164 and after 0.2768694758415222 +num_clicks 50 points_length: 26063 dynamic_size: 1 +filter out voxels: 1142 +filter out voxels: 0 +First batch: fn: 0.6448, fp: 0.0358, label 0: tensor(54), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.011846360750496387 and after 0.2786901891231537 +epoch: 1/20, iter: 3/42: loss:3.2495: rank:-1 +[21:42:21.174] epoch: 1/20, iter: 3/42: loss:3.2495: rank:-1 +num_clicks 50 points_length: 2739 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(185) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.009773635305464268 and after 0.16389131546020508 +num_clicks 50 points_length: 6168 dynamic_size: 6 +filter out voxels: 3969 +filter out voxels: 0 +First batch: fn: 0.7568, fp: 1.4951, label 0: tensor(20), label 1: tensor(359) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.009456595405936241 and after 0.19456563889980316 +num_clicks 50 points_length: 5814 dynamic_size: 35 +filter out voxels: 3721 +filter out voxels: 0 +First batch: fn: 0.7247, fp: 1.3980, label 0: tensor(40), label 1: tensor(360) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.009459514170885086 and after 0.20860548317432404 +num_clicks 50 points_length: 5644 dynamic_size: 31 +filter out voxels: 3620 +filter out voxels: 0 +First batch: fn: 0.7046, fp: 1.3560, label 0: tensor(34), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.009335998445749283 and after 0.22346922755241394 +num_clicks 50 points_length: 5621 dynamic_size: 24 +filter out voxels: 3695 +filter out voxels: 0 +First batch: fn: 0.6700, fp: 1.3823, label 0: tensor(27), label 1: tensor(272) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.008984943851828575 and after 0.2335253655910492 +num_clicks 50 points_length: 5435 dynamic_size: 20 +filter out voxels: 3539 +filter out voxels: 0 +First batch: fn: 0.6616, fp: 1.3227, label 0: tensor(34), label 1: tensor(341) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0094319898635149 and after 0.23765942454338074 +num_clicks 50 points_length: 5480 dynamic_size: 46 +filter out voxels: 3599 +filter out voxels: 0 +First batch: fn: 0.6561, fp: 1.3447, label 0: tensor(42), label 1: tensor(378) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.009399165399372578 and after 0.24374906718730927 +num_clicks 50 points_length: 5427 dynamic_size: 11 +filter out voxels: 3572 +filter out voxels: 0 +First batch: fn: 0.6477, fp: 1.3337, label 0: tensor(15), label 1: tensor(344) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.009281174279749393 and after 0.24346907436847687 +num_clicks 50 points_length: 5495 dynamic_size: 27 +filter out voxels: 3653 +filter out voxels: 0 +First batch: fn: 0.6411, fp: 1.3651, label 0: tensor(30), label 1: tensor(320) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.009303229860961437 and after 0.24944187700748444 +num_clicks 50 points_length: 5384 dynamic_size: 44 +filter out voxels: 3549 +filter out voxels: 0 +First batch: fn: 0.6400, fp: 1.3257, label 0: tensor(39), label 1: tensor(438) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00939637515693903 and after 0.2547130882740021 +num_clicks 50 points_length: 5384 dynamic_size: 44 +filter out voxels: 3564 +filter out voxels: 0 +First batch: fn: 0.6334, fp: 1.3322, label 0: tensor(37), label 1: tensor(359) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.009322460740804672 and after 0.2580181956291199 +epoch: 1/20, iter: 4/42: loss:3.5876: rank:-1 +[21:42:37.133] epoch: 1/20, iter: 4/42: loss:3.5876: rank:-1 +num_clicks 50 points_length: 6980 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0011649827938526869 and after 0.07612551748752594 +num_clicks 50 points_length: 6455 dynamic_size: 39 +filter out voxels: 310 +filter out voxels: 0 +First batch: fn: 0.9939, fp: 0.0016, label 0: tensor(1), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0013078806223347783 and after 0.1266990453004837 +num_clicks 50 points_length: 6021 dynamic_size: 13 +filter out voxels: 296 +filter out voxels: 0 +First batch: fn: 0.9942, fp: 0.0015, label 0: tensor(2), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0014507375890389085 and after 0.15087063610553741 +num_clicks 50 points_length: 5798 dynamic_size: 21 +filter out voxels: 296 +filter out voxels: 0 +First batch: fn: 0.9942, fp: 0.0015, label 0: tensor(2), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0014507375890389085 and after 0.17681598663330078 +num_clicks 50 points_length: 5560 dynamic_size: 25 +filter out voxels: 298 +filter out voxels: 0 +First batch: fn: 0.9926, fp: 0.0015, label 0: tensor(2), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0013078805059194565 and after 0.19288977980613708 +num_clicks 50 points_length: 5417 dynamic_size: 9 +filter out voxels: 297 +filter out voxels: 0 +First batch: fn: 0.9906, fp: 0.0015, label 0: tensor(2), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001450737239792943 and after 0.19743089377880096 +num_clicks 50 points_length: 5383 dynamic_size: 12 +filter out voxels: 296 +filter out voxels: 0 +First batch: fn: 0.9894, fp: 0.0015, label 0: tensor(2), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0014507375890389085 and after 0.19981873035430908 +num_clicks 50 points_length: 5359 dynamic_size: 25 +filter out voxels: 295 +filter out voxels: 0 +First batch: fn: 0.9894, fp: 0.0015, label 0: tensor(2), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0014507374726235867 and after 0.20423592627048492 +num_clicks 50 points_length: 5312 dynamic_size: 46 +filter out voxels: 298 +filter out voxels: 0 +First batch: fn: 0.9893, fp: 0.0015, label 0: tensor(2), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0014507375890389085 and after 0.2098928540945053 +num_clicks 50 points_length: 5253 dynamic_size: 6 +filter out voxels: 296 +filter out voxels: 0 +First batch: fn: 0.9893, fp: 0.0015, label 0: tensor(2), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0014507375890389085 and after 0.21300595998764038 +num_clicks 50 points_length: 5221 dynamic_size: 22 +filter out voxels: 294 +filter out voxels: 0 +First batch: fn: 0.9892, fp: 0.0015, label 0: tensor(2), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0014456558274105191 and after 0.21685639023780823 +epoch: 1/20, iter: 5/42: loss:4.1841: rank:-1 +[21:42:56.360] epoch: 1/20, iter: 5/42: loss:4.1841: rank:-1 +num_clicks 50 points_length: 295 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0751357227563858 and after 0.39762958884239197 +num_clicks 50 points_length: 4645 dynamic_size: 35 +filter out voxels: 4341 +filter out voxels: 2945 +First batch: fn: 1.0000, fp: 14.7458, label 0: tensor(42), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08846225589513779 and after 0.3990805447101593 +num_clicks 50 points_length: 3944 dynamic_size: 42 +filter out voxels: 3643 +filter out voxels: 3022 +First batch: fn: 1.0000, fp: 12.3695, label 0: tensor(46), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08162693679332733 and after 0.39821818470954895 +num_clicks 50 points_length: 3964 dynamic_size: 50 +filter out voxels: 3663 +filter out voxels: 2953 +First batch: fn: 1.0000, fp: 12.4373, label 0: tensor(55), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08023960888385773 and after 0.3985989987850189 +num_clicks 50 points_length: 3900 dynamic_size: 32 +filter out voxels: 3601 +filter out voxels: 2930 +First batch: fn: 0.9932, fp: 12.2271, label 0: tensor(32), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09299954026937485 and after 0.4027997553348541 +num_clicks 50 points_length: 3913 dynamic_size: 26 +filter out voxels: 3624 +filter out voxels: 3073 +First batch: fn: 0.9593, fp: 12.3051, label 0: tensor(32), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08944172412157059 and after 0.40276744961738586 +num_clicks 50 points_length: 3896 dynamic_size: 5 +filter out voxels: 3608 +filter out voxels: 3040 +First batch: fn: 0.9559, fp: 12.2508, label 0: tensor(9), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0868220329284668 and after 0.4047669470310211 +num_clicks 50 points_length: 4291 dynamic_size: 49 +filter out voxels: 4014 +filter out voxels: 3004 +First batch: fn: 0.9186, fp: 13.6271, label 0: tensor(53), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08725012838840485 and after 0.40576183795928955 +num_clicks 50 points_length: 3819 dynamic_size: 21 +filter out voxels: 3543 +filter out voxels: 3001 +First batch: fn: 0.9153, fp: 12.0305, label 0: tensor(25), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08274156600236893 and after 0.40541088581085205 +num_clicks 50 points_length: 4045 dynamic_size: 30 +filter out voxels: 3771 +filter out voxels: 2958 +First batch: fn: 0.9085, fp: 12.8034, label 0: tensor(35), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08853746205568314 and after 0.40657204389572144 +num_clicks 50 points_length: 3899 dynamic_size: 7 +filter out voxels: 3626 +filter out voxels: 3018 +First batch: fn: 0.9051, fp: 12.3119, label 0: tensor(12), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07645700126886368 and after 0.40584883093833923 +epoch: 1/20, iter: 6/42: loss:3.3689: rank:-1 +[21:43:07.596] epoch: 1/20, iter: 6/42: loss:3.3689: rank:-1 +num_clicks 50 points_length: 837 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05212454870343208 and after 0.22545035183429718 +num_clicks 50 points_length: 37317 dynamic_size: 39 +filter out voxels: 13741 +filter out voxels: 36480 +First batch: fn: 0.6445, fp: 0.2212, label 0: tensor(9), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04856673255562782 and after 0.22368577122688293 +num_clicks 50 points_length: 35357 dynamic_size: 43 +filter out voxels: 12890 +filter out voxels: 34520 +First batch: fn: 0.6519, fp: 0.2080, label 0: tensor(7), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.050901927053928375 and after 0.22528113424777985 +num_clicks 50 points_length: 35462 dynamic_size: 14 +filter out voxels: 13247 +filter out voxels: 34625 +First batch: fn: 0.6471, fp: 0.2135, label 0: tensor(3), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05096184462308884 and after 0.2259121984243393 +num_clicks 50 points_length: 35786 dynamic_size: 11 +filter out voxels: 13323 +filter out voxels: 34949 +First batch: fn: 0.6455, fp: 0.2146, label 0: tensor(5), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.044887810945510864 and after 0.2236485481262207 +num_clicks 50 points_length: 35966 dynamic_size: 8 +filter out voxels: 12505 +filter out voxels: 35129 +First batch: fn: 0.6537, fp: 0.2021, label 0: tensor(4), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05319201201200485 and after 0.22762787342071533 +num_clicks 50 points_length: 36156 dynamic_size: 8 +filter out voxels: 13387 +filter out voxels: 35319 +First batch: fn: 0.6417, fp: 0.2159, label 0: tensor(2), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05393148213624954 and after 0.22877226769924164 +num_clicks 50 points_length: 36078 dynamic_size: 32 +filter out voxels: 13538 +filter out voxels: 35241 +First batch: fn: 0.6387, fp: 0.2182, label 0: tensor(9), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04802067577838898 and after 0.224993035197258 +num_clicks 50 points_length: 35826 dynamic_size: 31 +filter out voxels: 12879 +filter out voxels: 34989 +First batch: fn: 0.6494, fp: 0.2077, label 0: tensor(9), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05035802721977234 and after 0.22730888426303864 +num_clicks 50 points_length: 35454 dynamic_size: 37 +filter out voxels: 13283 +filter out voxels: 34617 +First batch: fn: 0.6428, fp: 0.2141, label 0: tensor(6), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.047670893371105194 and after 0.22585327923297882 +num_clicks 50 points_length: 35357 dynamic_size: 43 +filter out voxels: 12813 +filter out voxels: 34520 +First batch: fn: 0.6480, fp: 0.2066, label 0: tensor(13), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.048602957278490067 and after 0.2268078476190567 +epoch: 1/20, iter: 7/42: loss:3.5175: rank:-1 +[21:43:18.101] epoch: 1/20, iter: 7/42: loss:3.5175: rank:-1 +num_clicks 50 points_length: 19736 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22780385613441467 and after 0.3227733373641968 +num_clicks 50 points_length: 24803 dynamic_size: 41 +filter out voxels: 3912 +filter out voxels: 20756 +First batch: fn: 0.8183, fp: 0.4385, label 0: tensor(418), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20077456533908844 and after 0.34589582681655884 +num_clicks 50 points_length: 23533 dynamic_size: 9 +filter out voxels: 3749 +filter out voxels: 19644 +First batch: fn: 0.7981, fp: 0.3943, label 0: tensor(437), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21874769032001495 and after 0.36591973900794983 +num_clicks 50 points_length: 22651 dynamic_size: 50 +filter out voxels: 3921 +filter out voxels: 20009 +First batch: fn: 0.7681, fp: 0.3796, label 0: tensor(344), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22025847434997559 and after 0.3826950192451477 +num_clicks 50 points_length: 21985 dynamic_size: 14 +filter out voxels: 3962 +filter out voxels: 19849 +First batch: fn: 0.7448, fp: 0.3692, label 0: tensor(409), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2143770456314087 and after 0.39840346574783325 +num_clicks 50 points_length: 20987 dynamic_size: 22 +filter out voxels: 3822 +filter out voxels: 19911 +First batch: fn: 0.7257, fp: 0.3377, label 0: tensor(396), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2015974372625351 and after 0.4176529049873352 +num_clicks 50 points_length: 20134 dynamic_size: 26 +filter out voxels: 3837 +filter out voxels: 19530 +First batch: fn: 0.7005, fp: 0.3196, label 0: tensor(277), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21358147263526917 and after 0.43268895149230957 +num_clicks 50 points_length: 19400 dynamic_size: 3 +filter out voxels: 3863 +filter out voxels: 19684 +First batch: fn: 0.6746, fp: 0.3084, label 0: tensor(267), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22184184193611145 and after 0.44103294610977173 +num_clicks 50 points_length: 18839 dynamic_size: 32 +filter out voxels: 3793 +filter out voxels: 20090 +First batch: fn: 0.6608, fp: 0.2938, label 0: tensor(301), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21837270259857178 and after 0.4503721296787262 +num_clicks 50 points_length: 18393 dynamic_size: 48 +filter out voxels: 3808 +filter out voxels: 20024 +First batch: fn: 0.6481, fp: 0.2839, label 0: tensor(190), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2167535275220871 and after 0.4592210650444031 +num_clicks 50 points_length: 17954 dynamic_size: 17 +filter out voxels: 3718 +filter out voxels: 19791 +First batch: fn: 0.6365, fp: 0.2732, label 0: tensor(236), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22027161717414856 and after 0.4705057740211487 +epoch: 1/20, iter: 8/42: loss:2.8581: rank:-1 +[21:43:40.401] epoch: 1/20, iter: 8/42: loss:2.8581: rank:-1 +num_clicks 50 points_length: 20486 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35729891061782837 and after 0.6897648572921753 +num_clicks 50 points_length: 6161 dynamic_size: 22 +filter out voxels: 1390 +filter out voxels: 1371 +First batch: fn: 0.1034, fp: 0.1974, label 0: tensor(512), label 1: tensor(411) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34230324625968933 and after 0.6950324177742004 +num_clicks 50 points_length: 5543 dynamic_size: 33 +filter out voxels: 1189 +filter out voxels: 1261 +First batch: fn: 0.0957, fp: 0.1749, label 0: tensor(505), label 1: tensor(385) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3377636671066284 and after 0.6970064043998718 +num_clicks 50 points_length: 5284 dynamic_size: 50 +filter out voxels: 1173 +filter out voxels: 1198 +First batch: fn: 0.0883, fp: 0.1696, label 0: tensor(437), label 1: tensor(442) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3409046530723572 and after 0.7025672793388367 +num_clicks 50 points_length: 5137 dynamic_size: 27 +filter out voxels: 1182 +filter out voxels: 1221 +First batch: fn: 0.0815, fp: 0.1693, label 0: tensor(465), label 1: tensor(479) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3412048816680908 and after 0.7019047737121582 +num_clicks 50 points_length: 5016 dynamic_size: 49 +filter out voxels: 1186 +filter out voxels: 1188 +First batch: fn: 0.0782, fp: 0.1667, label 0: tensor(473), label 1: tensor(378) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33950117230415344 and after 0.7052717804908752 +num_clicks 50 points_length: 4896 dynamic_size: 22 +filter out voxels: 1174 +filter out voxels: 1198 +First batch: fn: 0.0755, fp: 0.1635, label 0: tensor(497), label 1: tensor(417) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3395605683326721 and after 0.7079406976699829 +num_clicks 50 points_length: 4821 dynamic_size: 49 +filter out voxels: 1170 +filter out voxels: 1181 +First batch: fn: 0.0744, fp: 0.1609, label 0: tensor(459), label 1: tensor(413) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34624356031417847 and after 0.7120571732521057 +num_clicks 50 points_length: 4753 dynamic_size: 34 +filter out voxels: 1151 +filter out voxels: 1234 +First batch: fn: 0.0727, fp: 0.1593, label 0: tensor(444), label 1: tensor(403) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.343766450881958 and after 0.7138396501541138 +num_clicks 50 points_length: 4699 dynamic_size: 33 +filter out voxels: 1141 +filter out voxels: 1203 +First batch: fn: 0.0714, fp: 0.1580, label 0: tensor(415), label 1: tensor(449) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.339293897151947 and after 0.7142012119293213 +num_clicks 50 points_length: 4624 dynamic_size: 19 +filter out voxels: 1129 +filter out voxels: 1150 +First batch: fn: 0.0700, fp: 0.1557, label 0: tensor(453), label 1: tensor(429) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3400169014930725 and after 0.7172110080718994 +epoch: 1/20, iter: 9/42: loss:2.4715: rank:-1 +[21:44:04.699] epoch: 1/20, iter: 9/42: loss:2.4715: rank:-1 +num_clicks 50 points_length: 556 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14333312213420868 and after 0.3413955271244049 +num_clicks 50 points_length: 59843 dynamic_size: 20 +filter out voxels: 59254 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 106.6313, label 0: tensor(30), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13848131895065308 and after 0.33981162309646606 +num_clicks 50 points_length: 58335 dynamic_size: 1 +filter out voxels: 57762 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 103.9191, label 0: tensor(12), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14600560069084167 and after 0.3423681855201721 +num_clicks 50 points_length: 58797 dynamic_size: 22 +filter out voxels: 58219 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 104.7500, label 0: tensor(34), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1457347720861435 and after 0.34082603454589844 +num_clicks 50 points_length: 58485 dynamic_size: 16 +filter out voxels: 57915 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 104.1889, label 0: tensor(26), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14404550194740295 and after 0.3408534824848175 +num_clicks 50 points_length: 58280 dynamic_size: 50 +filter out voxels: 57712 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 103.8201, label 0: tensor(57), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14039111137390137 and after 0.3398096561431885 +num_clicks 50 points_length: 58389 dynamic_size: 49 +filter out voxels: 57819 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 104.0162, label 0: tensor(58), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14356710016727448 and after 0.34095510840415955 +num_clicks 50 points_length: 58160 dynamic_size: 44 +filter out voxels: 57590 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 103.6043, label 0: tensor(54), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1406026929616928 and after 0.34092646837234497 +num_clicks 50 points_length: 58474 dynamic_size: 18 +filter out voxels: 57904 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 104.1691, label 0: tensor(26), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14614778757095337 and after 0.3416329622268677 +num_clicks 50 points_length: 58296 dynamic_size: 38 +filter out voxels: 57728 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 103.8489, label 0: tensor(46), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13692694902420044 and after 0.34077781438827515 +num_clicks 50 points_length: 58289 dynamic_size: 48 +filter out voxels: 57721 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 103.8363, label 0: tensor(55), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1462453454732895 and after 0.34220123291015625 +epoch: 1/20, iter: 10/42: loss:3.4599: rank:-1 +[21:44:16.939] epoch: 1/20, iter: 10/42: loss:3.4599: rank:-1 +num_clicks 50 points_length: 650 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.572264515445568e-05 and after 0.004539428744465113 +num_clicks 50 points_length: 24667 dynamic_size: 21 +filter out voxels: 21446 +filter out voxels: 84699 +First batch: fn: 0.9491, fp: 10.1571, label 0: tensor(19), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.004733680747449398 +num_clicks 50 points_length: 24901 dynamic_size: 20 +filter out voxels: 21747 +filter out voxels: 79946 +First batch: fn: 0.9464, fp: 10.2652, label 0: tensor(17), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.005960400216281414 +num_clicks 50 points_length: 24203 dynamic_size: 45 +filter out voxels: 21078 +filter out voxels: 81212 +First batch: fn: 0.9343, fp: 9.9631, label 0: tensor(41), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.005527147091925144 +num_clicks 50 points_length: 26302 dynamic_size: 4 +filter out voxels: 23208 +filter out voxels: 78873 +First batch: fn: 0.9338, fp: 10.9086, label 0: tensor(3), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.466080281417817e-05 and after 0.007231920026242733 +num_clicks 50 points_length: 23712 dynamic_size: 31 +filter out voxels: 20584 +filter out voxels: 81621 +First batch: fn: 0.9217, fp: 9.7546, label 0: tensor(26), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.007496610749512911 +num_clicks 50 points_length: 24702 dynamic_size: 17 +filter out voxels: 21641 +filter out voxels: 79885 +First batch: fn: 0.9154, fp: 10.2067, label 0: tensor(14), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0079788314178586 +num_clicks 50 points_length: 24173 dynamic_size: 31 +filter out voxels: 21101 +filter out voxels: 80732 +First batch: fn: 0.9118, fp: 9.9721, label 0: tensor(28), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0077025857754051685 +num_clicks 50 points_length: 25054 dynamic_size: 3 +filter out voxels: 22022 +filter out voxels: 79636 +First batch: fn: 0.9118, fp: 10.3688, label 0: tensor(3), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 4.4843051000498235e-05 and after 0.008732711896300316 +num_clicks 50 points_length: 23515 dynamic_size: 3 +filter out voxels: 20434 +filter out voxels: 82693 +First batch: fn: 0.9059, fp: 9.6817, label 0: tensor(3), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.00863285455852747 +num_clicks 50 points_length: 23678 dynamic_size: 43 +filter out voxels: 20611 +filter out voxels: 81887 +First batch: fn: 0.9063, fp: 9.7546, label 0: tensor(41), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.007634590845555067 +epoch: 1/20, iter: 11/42: loss:4.4791: rank:-1 +[21:44:25.642] epoch: 1/20, iter: 11/42: loss:4.4791: rank:-1 +num_clicks 50 points_length: 4579 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(189) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00029097963124513626 and after 0.00836564414203167 +num_clicks 50 points_length: 13296 dynamic_size: 6 +filter out voxels: 3341 +filter out voxels: 40996 +First batch: fn: 1.0000, fp: 0.3356, label 0: tensor(1), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00023713540576864034 and after 0.010748633183538914 +num_clicks 50 points_length: 13491 dynamic_size: 4 +filter out voxels: 3536 +filter out voxels: 41127 +First batch: fn: 1.0000, fp: 0.3552, label 0: tensor(0), label 1: tensor(169) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00023905144189484417 and after 0.013268948532640934 +num_clicks 50 points_length: 13467 dynamic_size: 48 +filter out voxels: 3512 +filter out voxels: 40924 +First batch: fn: 1.0000, fp: 0.3528, label 0: tensor(9), label 1: tensor(223) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00023979664547368884 and after 0.015904029831290245 +num_clicks 50 points_length: 13456 dynamic_size: 1 +filter out voxels: 3501 +filter out voxels: 40775 +First batch: fn: 1.0000, fp: 0.3517, label 0: tensor(0), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002380952355451882 and after 0.018496844917535782 +num_clicks 50 points_length: 13517 dynamic_size: 13 +filter out voxels: 3562 +filter out voxels: 40883 +First batch: fn: 1.0000, fp: 0.3578, label 0: tensor(4), label 1: tensor(197) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00023940627579577267 and after 0.02002050168812275 +num_clicks 50 points_length: 13438 dynamic_size: 21 +filter out voxels: 3483 +filter out voxels: 40774 +First batch: fn: 1.0000, fp: 0.3499, label 0: tensor(9), label 1: tensor(182) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00023937188962008804 and after 0.02067475952208042 +num_clicks 50 points_length: 13372 dynamic_size: 1 +filter out voxels: 3417 +filter out voxels: 40644 +First batch: fn: 1.0000, fp: 0.3432, label 0: tensor(0), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00024060439318418503 and after 0.021856777369976044 +num_clicks 50 points_length: 13441 dynamic_size: 6 +filter out voxels: 3486 +filter out voxels: 40577 +First batch: fn: 1.0000, fp: 0.3502, label 0: tensor(2), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002380385558353737 and after 0.02218237891793251 +num_clicks 50 points_length: 13441 dynamic_size: 50 +filter out voxels: 3486 +filter out voxels: 40831 +First batch: fn: 1.0000, fp: 0.3502, label 0: tensor(12), label 1: tensor(163) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00024183797359000891 and after 0.02283315919339657 +num_clicks 50 points_length: 13373 dynamic_size: 27 +filter out voxels: 3418 +filter out voxels: 40515 +First batch: fn: 1.0000, fp: 0.3433, label 0: tensor(8), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002434037596685812 and after 0.023201415315270424 +epoch: 1/20, iter: 12/42: loss:4.3862: rank:-1 +[21:44:36.714] epoch: 1/20, iter: 12/42: loss:4.3862: rank:-1 +num_clicks 50 points_length: 1719 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.020478878170251846 and after 0.028817862272262573 +num_clicks 50 points_length: 23903 dynamic_size: 24 +filter out voxels: 29642 +filter out voxels: 2983 +First batch: fn: 0.8202, fp: 26.5748, label 0: tensor(523), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.022255655378103256 and after 0.04063621163368225 +num_clicks 50 points_length: 22429 dynamic_size: 11 +filter out voxels: 30128 +filter out voxels: 2396 +First batch: fn: 0.7877, fp: 26.5288, label 0: tensor(511), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.022916698828339577 and after 0.0556037537753582 +num_clicks 50 points_length: 22024 dynamic_size: 33 +filter out voxels: 30241 +filter out voxels: 2487 +First batch: fn: 0.7627, fp: 26.5265, label 0: tensor(532), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.022456148639321327 and after 0.06957003474235535 +num_clicks 50 points_length: 21594 dynamic_size: 1 +filter out voxels: 29991 +filter out voxels: 2531 +First batch: fn: 0.7516, fp: 25.8947, label 0: tensor(501), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.023132476955652237 and after 0.0801469013094902 +num_clicks 50 points_length: 21189 dynamic_size: 29 +filter out voxels: 30520 +filter out voxels: 2473 +First batch: fn: 0.7452, fp: 26.2461, label 0: tensor(528), label 1: tensor(170) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0234360434114933 and after 0.09106381237506866 +num_clicks 50 points_length: 20741 dynamic_size: 41 +filter out voxels: 29854 +filter out voxels: 2432 +First batch: fn: 0.7475, fp: 24.9994, label 0: tensor(541), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.022695349529385567 and after 0.09598947316408157 +num_clicks 50 points_length: 20404 dynamic_size: 46 +filter out voxels: 30011 +filter out voxels: 2341 +First batch: fn: 0.7417, fp: 24.7504, label 0: tensor(544), label 1: tensor(169) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.023550305515527725 and after 0.1157805398106575 +num_clicks 50 points_length: 19938 dynamic_size: 20 +filter out voxels: 30277 +filter out voxels: 2387 +First batch: fn: 0.7347, fp: 24.7766, label 0: tensor(520), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.022787226364016533 and after 0.1280449628829956 +num_clicks 50 points_length: 19650 dynamic_size: 6 +filter out voxels: 30411 +filter out voxels: 2451 +First batch: fn: 0.7289, fp: 24.7202, label 0: tensor(506), label 1: tensor(169) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.02319985255599022 and after 0.14178651571273804 +num_clicks 50 points_length: 19180 dynamic_size: 34 +filter out voxels: 29968 +filter out voxels: 2417 +First batch: fn: 0.7312, fp: 24.0081, label 0: tensor(533), label 1: tensor(170) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.02295524813234806 and after 0.15734946727752686 +epoch: 1/20, iter: 13/42: loss:4.0136: rank:-1 +[21:44:55.985] epoch: 1/20, iter: 13/42: loss:4.0136: rank:-1 +num_clicks 50 points_length: 111241 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18893951177597046 and after 0.22580008208751678 +num_clicks 50 points_length: 92018 dynamic_size: 19 +filter out voxels: 12056 +filter out voxels: 0 +First batch: fn: 0.7185, fp: 0.1087, label 0: tensor(6), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19184385240077972 and after 0.2284640222787857 +num_clicks 50 points_length: 92002 dynamic_size: 7 +filter out voxels: 12248 +filter out voxels: 0 +First batch: fn: 0.7167, fp: 0.1104, label 0: tensor(2), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19216345250606537 and after 0.2296501100063324 +num_clicks 50 points_length: 91859 dynamic_size: 42 +filter out voxels: 12201 +filter out voxels: 0 +First batch: fn: 0.7158, fp: 0.1100, label 0: tensor(8), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19062590599060059 and after 0.22993670403957367 +num_clicks 50 points_length: 91672 dynamic_size: 3 +filter out voxels: 12144 +filter out voxels: 0 +First batch: fn: 0.7146, fp: 0.1094, label 0: tensor(3), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19072115421295166 and after 0.23158961534500122 +num_clicks 50 points_length: 91352 dynamic_size: 21 +filter out voxels: 12056 +filter out voxels: 0 +First batch: fn: 0.7126, fp: 0.1086, label 0: tensor(3), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19240279495716095 and after 0.23256026208400726 +num_clicks 50 points_length: 91382 dynamic_size: 26 +filter out voxels: 12271 +filter out voxels: 0 +First batch: fn: 0.7109, fp: 0.1106, label 0: tensor(4), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1922953873872757 and after 0.23336055874824524 +num_clicks 50 points_length: 91260 dynamic_size: 30 +filter out voxels: 12202 +filter out voxels: 0 +First batch: fn: 0.7104, fp: 0.1099, label 0: tensor(5), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19058899581432343 and after 0.23502300679683685 +num_clicks 50 points_length: 90925 dynamic_size: 6 +filter out voxels: 12027 +filter out voxels: 0 +First batch: fn: 0.7090, fp: 0.1084, label 0: tensor(2), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1917603462934494 and after 0.23752526938915253 +num_clicks 50 points_length: 90602 dynamic_size: 18 +filter out voxels: 12075 +filter out voxels: 0 +First batch: fn: 0.7057, fp: 0.1088, label 0: tensor(7), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19065137207508087 and after 0.23690608143806458 +num_clicks 50 points_length: 90410 dynamic_size: 34 +filter out voxels: 11943 +filter out voxels: 0 +First batch: fn: 0.7051, fp: 0.1076, label 0: tensor(7), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19152776896953583 and after 0.23856788873672485 +epoch: 1/20, iter: 14/42: loss:4.4249: rank:-1 +[21:45:19.876] epoch: 1/20, iter: 14/42: loss:4.4249: rank:-1 +num_clicks 50 points_length: 4170 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(227) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0580710768699646 and after 0.10592271387577057 +num_clicks 50 points_length: 37209 dynamic_size: 48 +filter out voxels: 31187 +filter out voxels: 20400 +First batch: fn: 0.5355, fp: 8.3875, label 0: tensor(482), label 1: tensor(276) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.050753407180309296 and after 0.11361270397901535 +num_clicks 50 points_length: 34468 dynamic_size: 45 +filter out voxels: 29278 +filter out voxels: 18475 +First batch: fn: 0.5151, fp: 7.7506, label 0: tensor(431), label 1: tensor(254) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.053427714854478836 and after 0.12028053402900696 +num_clicks 50 points_length: 33621 dynamic_size: 40 +filter out voxels: 28957 +filter out voxels: 18971 +First batch: fn: 0.4871, fp: 7.5755, label 0: tensor(340), label 1: tensor(333) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05359383672475815 and after 0.126929372549057 +num_clicks 50 points_length: 33131 dynamic_size: 4 +filter out voxels: 28782 +filter out voxels: 18742 +First batch: fn: 0.4405, fp: 7.5046, label 0: tensor(321), label 1: tensor(255) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05617406219244003 and after 0.13165995478630066 +num_clicks 50 points_length: 32600 dynamic_size: 37 +filter out voxels: 28555 +filter out voxels: 19280 +First batch: fn: 0.4283, fp: 7.3894, label 0: tensor(342), label 1: tensor(280) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05457811802625656 and after 0.13534653186798096 +num_clicks 50 points_length: 32250 dynamic_size: 18 +filter out voxels: 28389 +filter out voxels: 18679 +First batch: fn: 0.4216, fp: 7.3122, label 0: tensor(288), label 1: tensor(341) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.055832043290138245 and after 0.1391553282737732 +num_clicks 50 points_length: 32194 dynamic_size: 11 +filter out voxels: 28495 +filter out voxels: 18812 +First batch: fn: 0.4005, fp: 7.3199, label 0: tensor(329), label 1: tensor(269) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.056376829743385315 and after 0.14104601740837097 +num_clicks 50 points_length: 31842 dynamic_size: 36 +filter out voxels: 28262 +filter out voxels: 19023 +First batch: fn: 0.3988, fp: 7.2372, label 0: tensor(324), label 1: tensor(197) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05966486781835556 and after 0.14310678839683533 +num_clicks 50 points_length: 31506 dynamic_size: 12 +filter out voxels: 28104 +filter out voxels: 20085 +First batch: fn: 0.3890, fp: 7.1664, label 0: tensor(253), label 1: tensor(286) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05993098020553589 and after 0.14448435604572296 +num_clicks 50 points_length: 31660 dynamic_size: 15 +filter out voxels: 28268 +filter out voxels: 19678 +First batch: fn: 0.3847, fp: 7.2077, label 0: tensor(244), label 1: tensor(228) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06067962199449539 and after 0.145704984664917 +epoch: 1/20, iter: 15/42: loss:3.9379: rank:-1 +[21:45:37.501] epoch: 1/20, iter: 15/42: loss:3.9379: rank:-1 +num_clicks 50 points_length: 1560 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.002336216624826193 and after 0.01481700874865055 +num_clicks 50 points_length: 22509 dynamic_size: 3 +filter out voxels: 8181 +filter out voxels: 38218 +First batch: fn: 0.9461, fp: 2.6622, label 0: tensor(158), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.001992777455598116 and after 0.03230199217796326 +num_clicks 50 points_length: 21367 dynamic_size: 17 +filter out voxels: 7817 +filter out voxels: 37291 +First batch: fn: 0.8860, fp: 2.5393, label 0: tensor(150), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0021292315796017647 and after 0.04931805655360222 +num_clicks 50 points_length: 21015 dynamic_size: 8 +filter out voxels: 7873 +filter out voxels: 37281 +First batch: fn: 0.8233, fp: 2.5455, label 0: tensor(211), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0022508956026285887 and after 0.06258826702833176 +num_clicks 50 points_length: 20596 dynamic_size: 13 +filter out voxels: 7857 +filter out voxels: 37156 +First batch: fn: 0.7754, fp: 2.5263, label 0: tensor(141), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0023389908019453287 and after 0.07007268816232681 +num_clicks 50 points_length: 20595 dynamic_size: 17 +filter out voxels: 7981 +filter out voxels: 37068 +First batch: fn: 0.7466, fp: 2.5550, label 0: tensor(227), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0023469433654099703 and after 0.08072727918624878 +num_clicks 50 points_length: 19983 dynamic_size: 36 +filter out voxels: 7774 +filter out voxels: 37155 +First batch: fn: 0.7103, fp: 2.4931, label 0: tensor(135), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00243334099650383 and after 0.08928634971380234 +num_clicks 50 points_length: 19863 dynamic_size: 44 +filter out voxels: 7877 +filter out voxels: 37238 +First batch: fn: 0.6747, fp: 2.5095, label 0: tensor(249), label 1: tensor(464) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.002229026984423399 and after 0.0940084159374237 +num_clicks 50 points_length: 19562 dynamic_size: 11 +filter out voxels: 7812 +filter out voxels: 37281 +First batch: fn: 0.6584, fp: 2.4776, label 0: tensor(208), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0024389224126935005 and after 0.09688985347747803 +num_clicks 50 points_length: 19497 dynamic_size: 28 +filter out voxels: 7841 +filter out voxels: 37082 +First batch: fn: 0.6478, fp: 2.4777, label 0: tensor(175), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0025613708421587944 and after 0.10294324159622192 +num_clicks 50 points_length: 19166 dynamic_size: 16 +filter out voxels: 7745 +filter out voxels: 37203 +First batch: fn: 0.6271, fp: 2.4453, label 0: tensor(198), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0022360915318131447 and after 0.10489116609096527 +epoch: 1/20, iter: 16/42: loss:4.0784: rank:-1 +[21:45:55.269] epoch: 1/20, iter: 16/42: loss:4.0784: rank:-1 +num_clicks 50 points_length: 16694 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04358042776584625 and after 0.24617522954940796 +num_clicks 50 points_length: 13909 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 2708 +First batch: fn: 0.9824, fp: 0.0040, label 0: tensor(72), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04166940227150917 and after 0.26498982310295105 +num_clicks 50 points_length: 12967 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 2382 +First batch: fn: 0.9831, fp: 0.0029, label 0: tensor(52), label 1: tensor(534) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04166225343942642 and after 0.279286652803421 +num_clicks 50 points_length: 12470 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 2341 +First batch: fn: 0.9817, fp: 0.0025, label 0: tensor(36), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04364245757460594 and after 0.29156923294067383 +num_clicks 50 points_length: 12127 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 2376 +First batch: fn: 0.9796, fp: 0.0024, label 0: tensor(53), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04033144935965538 and after 0.3067045509815216 +num_clicks 50 points_length: 11453 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 2163 +First batch: fn: 0.9787, fp: 0.0022, label 0: tensor(52), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.042819589376449585 and after 0.3146829903125763 +num_clicks 50 points_length: 11221 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 2227 +First batch: fn: 0.9777, fp: 0.0020, label 0: tensor(63), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.040421344339847565 and after 0.3284294009208679 +num_clicks 50 points_length: 10648 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 2106 +First batch: fn: 0.9766, fp: 0.0018, label 0: tensor(55), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04129240661859512 and after 0.3360610604286194 +num_clicks 50 points_length: 10369 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 2080 +First batch: fn: 0.9755, fp: 0.0017, label 0: tensor(49), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.040445633232593536 and after 0.34517568349838257 +num_clicks 50 points_length: 10047 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 1994 +First batch: fn: 0.9731, fp: 0.0017, label 0: tensor(58), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.042631570249795914 and after 0.3518652617931366 +num_clicks 50 points_length: 9873 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 2069 +First batch: fn: 0.9716, fp: 0.0016, label 0: tensor(65), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.040038175880908966 and after 0.3590060770511627 +epoch: 1/20, iter: 17/42: loss:3.5738: rank:-1 +[21:46:16.145] epoch: 1/20, iter: 17/42: loss:3.5738: rank:-1 +num_clicks 50 points_length: 106087 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.043227218091487885 and after 0.11711689829826355 +num_clicks 50 points_length: 121273 dynamic_size: 33 +filter out voxels: 2236 +filter out voxels: 405 +First batch: fn: 0.9284, fp: 0.0229, label 0: tensor(500), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04639885574579239 and after 0.13368374109268188 +num_clicks 50 points_length: 114118 dynamic_size: 49 +filter out voxels: 2104 +filter out voxels: 321 +First batch: fn: 0.9312, fp: 0.0202, label 0: tensor(377), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04486699402332306 and after 0.13227540254592896 +num_clicks 50 points_length: 114554 dynamic_size: 49 +filter out voxels: 2114 +filter out voxels: 335 +First batch: fn: 0.9305, fp: 0.0198, label 0: tensor(419), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04459202289581299 and after 0.13939785957336426 +num_clicks 50 points_length: 112624 dynamic_size: 33 +filter out voxels: 2090 +filter out voxels: 324 +First batch: fn: 0.9296, fp: 0.0189, label 0: tensor(399), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04382557421922684 and after 0.1418306976556778 +num_clicks 50 points_length: 112297 dynamic_size: 43 +filter out voxels: 2057 +filter out voxels: 329 +First batch: fn: 0.9300, fp: 0.0178, label 0: tensor(352), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04635128006339073 and after 0.15188810229301453 +num_clicks 50 points_length: 110792 dynamic_size: 4 +filter out voxels: 2046 +filter out voxels: 304 +First batch: fn: 0.9295, fp: 0.0171, label 0: tensor(349), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0458691380918026 and after 0.15238730609416962 +num_clicks 50 points_length: 109932 dynamic_size: 8 +filter out voxels: 2071 +filter out voxels: 274 +First batch: fn: 0.9272, fp: 0.0172, label 0: tensor(353), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04663291200995445 and after 0.1637219786643982 +num_clicks 50 points_length: 107859 dynamic_size: 45 +filter out voxels: 2049 +filter out voxels: 266 +First batch: fn: 0.9267, fp: 0.0166, label 0: tensor(404), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.046317022293806076 and after 0.16628018021583557 +num_clicks 50 points_length: 107401 dynamic_size: 29 +filter out voxels: 2030 +filter out voxels: 274 +First batch: fn: 0.9258, fp: 0.0162, label 0: tensor(351), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04491177201271057 and after 0.1652473509311676 +num_clicks 50 points_length: 107265 dynamic_size: 47 +filter out voxels: 2053 +filter out voxels: 278 +First batch: fn: 0.9245, fp: 0.0162, label 0: tensor(302), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0462910495698452 and after 0.18018974363803864 +epoch: 1/20, iter: 18/42: loss:4.1122: rank:-1 +[21:46:43.897] epoch: 1/20, iter: 18/42: loss:4.1122: rank:-1 +num_clicks 50 points_length: 961 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21928101778030396 and after 0.13754995167255402 +num_clicks 50 points_length: 29386 dynamic_size: 15 +filter out voxels: 25190 +filter out voxels: 131169 +First batch: fn: 0.4233, fp: 2.6163, label 0: tensor(13), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21865880489349365 and after 0.14094111323356628 +num_clicks 50 points_length: 28752 dynamic_size: 14 +filter out voxels: 24625 +filter out voxels: 130059 +First batch: fn: 0.4163, fp: 2.5576, label 0: tensor(11), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2191799134016037 and after 0.14294713735580444 +num_clicks 50 points_length: 28340 dynamic_size: 47 +filter out voxels: 24244 +filter out voxels: 129512 +First batch: fn: 0.4132, fp: 2.5181, label 0: tensor(39), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22003886103630066 and after 0.14516620337963104 +num_clicks 50 points_length: 27924 dynamic_size: 3 +filter out voxels: 23867 +filter out voxels: 130506 +First batch: fn: 0.4092, fp: 2.4791, label 0: tensor(2), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21831214427947998 and after 0.14309844374656677 +num_clicks 50 points_length: 28975 dynamic_size: 13 +filter out voxels: 25008 +filter out voxels: 131701 +First batch: fn: 0.3994, fp: 2.5976, label 0: tensor(10), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21829746663570404 and after 0.1461920440196991 +num_clicks 50 points_length: 28515 dynamic_size: 36 +filter out voxels: 24627 +filter out voxels: 131755 +First batch: fn: 0.3912, fp: 2.5582, label 0: tensor(28), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21937601268291473 and after 0.14878088235855103 +num_clicks 50 points_length: 27985 dynamic_size: 8 +filter out voxels: 24130 +filter out voxels: 131563 +First batch: fn: 0.3879, fp: 2.5067, label 0: tensor(6), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21891118586063385 and after 0.14926469326019287 +num_clicks 50 points_length: 28348 dynamic_size: 5 +filter out voxels: 24588 +filter out voxels: 132143 +First batch: fn: 0.3776, fp: 2.5545, label 0: tensor(4), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21760442852973938 and after 0.15012383460998535 +num_clicks 50 points_length: 28482 dynamic_size: 1 +filter out voxels: 24790 +filter out voxels: 133237 +First batch: fn: 0.3703, fp: 2.5757, label 0: tensor(1), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21714594960212708 and after 0.15046191215515137 +num_clicks 50 points_length: 28685 dynamic_size: 34 +filter out voxels: 25052 +filter out voxels: 132605 +First batch: fn: 0.3641, fp: 2.6029, label 0: tensor(31), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21926355361938477 and after 0.15442690253257751 +epoch: 1/20, iter: 19/42: loss:3.7243: rank:-1 +[21:46:53.840] epoch: 1/20, iter: 19/42: loss:3.7243: rank:-1 +num_clicks 50 points_length: 281 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24110808968544006 and after 0.3691983222961426 +num_clicks 50 points_length: 15036 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 12786 +First batch: fn: 0.4235, fp: 0.0041, label 0: tensor(0), label 1: tensor(328) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2478216141462326 and after 0.37315481901168823 +num_clicks 50 points_length: 13157 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 11419 +First batch: fn: 0.4199, fp: 0.0041, label 0: tensor(0), label 1: tensor(342) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24798128008842468 and after 0.374763548374176 +num_clicks 50 points_length: 12583 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 11205 +First batch: fn: 0.4188, fp: 0.0041, label 0: tensor(0), label 1: tensor(329) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24929724633693695 and after 0.37708592414855957 +num_clicks 50 points_length: 12431 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 11232 +First batch: fn: 0.4153, fp: 0.0042, label 0: tensor(1), label 1: tensor(341) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24909086525440216 and after 0.3779381513595581 +num_clicks 50 points_length: 12418 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 11304 +First batch: fn: 0.4153, fp: 0.0042, label 0: tensor(0), label 1: tensor(326) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25008368492126465 and after 0.380635529756546 +num_clicks 50 points_length: 12304 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 11227 +First batch: fn: 0.4101, fp: 0.0042, label 0: tensor(0), label 1: tensor(299) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24754421412944794 and after 0.38012421131134033 +num_clicks 50 points_length: 12402 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 11347 +First batch: fn: 0.4122, fp: 0.0042, label 0: tensor(1), label 1: tensor(350) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24876399338245392 and after 0.38193774223327637 +num_clicks 50 points_length: 12115 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 11171 +First batch: fn: 0.4094, fp: 0.0042, label 0: tensor(0), label 1: tensor(278) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24952222406864166 and after 0.38370561599731445 +num_clicks 50 points_length: 12141 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 11179 +First batch: fn: 0.4048, fp: 0.0043, label 0: tensor(0), label 1: tensor(270) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24804937839508057 and after 0.3825297951698303 +num_clicks 50 points_length: 12165 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 11218 +First batch: fn: 0.4080, fp: 0.0042, label 0: tensor(1), label 1: tensor(271) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24970777332782745 and after 0.3834441900253296 +epoch: 1/20, iter: 20/42: loss:3.5075: rank:-1 +[21:47:09.752] epoch: 1/20, iter: 20/42: loss:3.5075: rank:-1 +num_clicks 50 points_length: 2966 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(141) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3791936933994293 and after 0.36286306381225586 +num_clicks 50 points_length: 14183 dynamic_size: 17 +filter out voxels: 16950 +filter out voxels: 1070 +First batch: fn: 0.9086, fp: 5.9464, label 0: tensor(150), label 1: tensor(391) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3855259418487549 and after 0.3873167037963867 +num_clicks 50 points_length: 13037 dynamic_size: 47 +filter out voxels: 16273 +filter out voxels: 810 +First batch: fn: 0.8055, fp: 5.6494, label 0: tensor(117), label 1: tensor(470) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.385844886302948 and after 0.40303510427474976 +num_clicks 50 points_length: 12719 dynamic_size: 43 +filter out voxels: 16164 +filter out voxels: 784 +First batch: fn: 0.7185, fp: 5.5769, label 0: tensor(110), label 1: tensor(311) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.382259339094162 and after 0.40745973587036133 +num_clicks 50 points_length: 12988 dynamic_size: 32 +filter out voxels: 16053 +filter out voxels: 867 +First batch: fn: 0.6804, fp: 5.5172, label 0: tensor(124), label 1: tensor(329) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3858261704444885 and after 0.4188454747200012 +num_clicks 50 points_length: 12496 dynamic_size: 25 +filter out voxels: 15847 +filter out voxels: 795 +First batch: fn: 0.6325, fp: 5.4275, label 0: tensor(90), label 1: tensor(390) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3850421607494354 and after 0.42296093702316284 +num_clicks 50 points_length: 12319 dynamic_size: 13 +filter out voxels: 16055 +filter out voxels: 789 +First batch: fn: 0.6106, fp: 5.4922, label 0: tensor(96), label 1: tensor(332) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38750141859054565 and after 0.42991167306900024 +num_clicks 50 points_length: 12005 dynamic_size: 39 +filter out voxels: 16002 +filter out voxels: 783 +First batch: fn: 0.5796, fp: 5.4710, label 0: tensor(94), label 1: tensor(253) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38324713706970215 and after 0.431455135345459 +num_clicks 50 points_length: 12277 dynamic_size: 13 +filter out voxels: 15775 +filter out voxels: 845 +First batch: fn: 0.5597, fp: 5.3945, label 0: tensor(69), label 1: tensor(274) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38528937101364136 and after 0.43514978885650635 +num_clicks 50 points_length: 11961 dynamic_size: 45 +filter out voxels: 15999 +filter out voxels: 810 +First batch: fn: 0.5452, fp: 5.4700, label 0: tensor(122), label 1: tensor(303) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3865599036216736 and after 0.43962350487709045 +num_clicks 50 points_length: 11626 dynamic_size: 29 +filter out voxels: 15752 +filter out voxels: 789 +First batch: fn: 0.5384, fp: 5.3793, label 0: tensor(92), label 1: tensor(220) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3838644027709961 and after 0.44008925557136536 +epoch: 1/20, iter: 21/42: loss:2.7696: rank:-1 +[21:47:24.907] epoch: 1/20, iter: 21/42: loss:2.7696: rank:-1 +num_clicks 50 points_length: 1841 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(227) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5199428796768188 and after 0.5345696210861206 +num_clicks 50 points_length: 15124 dynamic_size: 49 +filter out voxels: 11018 +filter out voxels: 42 +First batch: fn: 0.1928, fp: 8.0223, label 0: tensor(478), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5368557572364807 and after 0.5528280138969421 +num_clicks 50 points_length: 12764 dynamic_size: 10 +filter out voxels: 9417 +filter out voxels: 38 +First batch: fn: 0.1505, fp: 6.7827, label 0: tensor(349), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5373644232749939 and after 0.5564360022544861 +num_clicks 50 points_length: 12550 dynamic_size: 6 +filter out voxels: 9434 +filter out voxels: 38 +First batch: fn: 0.1358, fp: 6.6812, label 0: tensor(382), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5393204689025879 and after 0.5593838095664978 +num_clicks 50 points_length: 12160 dynamic_size: 38 +filter out voxels: 9352 +filter out voxels: 36 +First batch: fn: 0.1369, fp: 6.4682, label 0: tensor(399), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5397620797157288 and after 0.5629335641860962 +num_clicks 50 points_length: 11809 dynamic_size: 38 +filter out voxels: 9242 +filter out voxels: 34 +First batch: fn: 0.1315, fp: 6.2830, label 0: tensor(270), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5359339118003845 and after 0.5647211074829102 +num_clicks 50 points_length: 11742 dynamic_size: 32 +filter out voxels: 9313 +filter out voxels: 38 +First batch: fn: 0.1233, fp: 6.2548, label 0: tensor(253), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5342385172843933 and after 0.565304696559906 +num_clicks 50 points_length: 11747 dynamic_size: 4 +filter out voxels: 9359 +filter out voxels: 35 +First batch: fn: 0.1190, fp: 6.2618, label 0: tensor(252), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5378193855285645 and after 0.5678069591522217 +num_clicks 50 points_length: 11466 dynamic_size: 31 +filter out voxels: 9171 +filter out voxels: 34 +First batch: fn: 0.1179, fp: 6.1103, label 0: tensor(218), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5346035957336426 and after 0.5677797198295593 +num_clicks 50 points_length: 11468 dynamic_size: 45 +filter out voxels: 9206 +filter out voxels: 34 +First batch: fn: 0.1200, fp: 6.1092, label 0: tensor(279), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5350923538208008 and after 0.5694834589958191 +num_clicks 50 points_length: 11404 dynamic_size: 36 +filter out voxels: 9186 +filter out voxels: 34 +First batch: fn: 0.1152, fp: 6.0793, label 0: tensor(334), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5377839207649231 and after 0.5713700652122498 +epoch: 1/20, iter: 22/42: loss:3.0569: rank:-1 +[21:47:41.074] epoch: 1/20, iter: 22/42: loss:3.0569: rank:-1 +num_clicks 50 points_length: 1406 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.029622819274663925 and after 0.03959999606013298 +num_clicks 50 points_length: 23898 dynamic_size: 33 +filter out voxels: 93113 +filter out voxels: 20875 +First batch: fn: 0.9749, fp: 0.7109, label 0: tensor(13), label 1: tensor(497) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.028422275558114052 and after 0.04464835673570633 +num_clicks 50 points_length: 22645 dynamic_size: 6 +filter out voxels: 93926 +filter out voxels: 20095 +First batch: fn: 0.9737, fp: 0.7123, label 0: tensor(3), label 1: tensor(391) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.028710490092635155 and after 0.048096224665641785 +num_clicks 50 points_length: 22373 dynamic_size: 43 +filter out voxels: 94326 +filter out voxels: 20015 +First batch: fn: 0.9710, fp: 0.7165, label 0: tensor(19), label 1: tensor(498) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.02860383689403534 and after 0.05212395638227463 +num_clicks 50 points_length: 22190 dynamic_size: 35 +filter out voxels: 94151 +filter out voxels: 20091 +First batch: fn: 0.9694, fp: 0.7145, label 0: tensor(11), label 1: tensor(362) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.028386849910020828 and after 0.053985655307769775 +num_clicks 50 points_length: 22073 dynamic_size: 34 +filter out voxels: 93716 +filter out voxels: 20119 +First batch: fn: 0.9687, fp: 0.7097, label 0: tensor(13), label 1: tensor(327) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.028663847595453262 and after 0.055674128234386444 +num_clicks 50 points_length: 22203 dynamic_size: 10 +filter out voxels: 93692 +filter out voxels: 20264 +First batch: fn: 0.9666, fp: 0.7103, label 0: tensor(4), label 1: tensor(327) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.028778882697224617 and after 0.057934537529945374 +num_clicks 50 points_length: 21951 dynamic_size: 30 +filter out voxels: 93904 +filter out voxels: 20143 +First batch: fn: 0.9644, fp: 0.7124, label 0: tensor(12), label 1: tensor(382) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.028471866622567177 and after 0.059252768754959106 +num_clicks 50 points_length: 21997 dynamic_size: 23 +filter out voxels: 93476 +filter out voxels: 20253 +First batch: fn: 0.9650, fp: 0.7072, label 0: tensor(4), label 1: tensor(302) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.028534889221191406 and after 0.06108778715133667 +num_clicks 50 points_length: 22013 dynamic_size: 43 +filter out voxels: 93773 +filter out voxels: 20310 +First batch: fn: 0.9627, fp: 0.7102, label 0: tensor(14), label 1: tensor(337) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.028653517365455627 and after 0.06317611783742905 +num_clicks 50 points_length: 21502 dynamic_size: 13 +filter out voxels: 93841 +filter out voxels: 19915 +First batch: fn: 0.9605, fp: 0.7106, label 0: tensor(9), label 1: tensor(324) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.02848244458436966 and after 0.06280268728733063 +epoch: 1/20, iter: 23/42: loss:4.734: rank:-1 +[21:47:58.127] epoch: 1/20, iter: 23/42: loss:4.734: rank:-1 +num_clicks 50 points_length: 1804 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(266) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18151603639125824 and after 0.17517410218715668 +num_clicks 50 points_length: 4115 dynamic_size: 44 +filter out voxels: 398 +filter out voxels: 139265 +First batch: fn: 0.7808, fp: 0.1002, label 0: tensor(28), label 1: tensor(461) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18236875534057617 and after 0.24450641870498657 +num_clicks 50 points_length: 3536 dynamic_size: 13 +filter out voxels: 342 +filter out voxels: 127153 +First batch: fn: 0.6652, fp: 0.0918, label 0: tensor(1), label 1: tensor(544) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18283453583717346 and after 0.28678667545318604 +num_clicks 50 points_length: 3168 dynamic_size: 42 +filter out voxels: 338 +filter out voxels: 127725 +First batch: fn: 0.5789, fp: 0.0993, label 0: tensor(42), label 1: tensor(431) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18156622350215912 and after 0.3107946515083313 +num_clicks 50 points_length: 2924 dynamic_size: 46 +filter out voxels: 326 +filter out voxels: 126585 +First batch: fn: 0.5271, fp: 0.0989, label 0: tensor(49), label 1: tensor(390) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18125124275684357 and after 0.3264421820640564 +num_clicks 50 points_length: 2747 dynamic_size: 12 +filter out voxels: 299 +filter out voxels: 125460 +First batch: fn: 0.4933, fp: 0.0948, label 0: tensor(49), label 1: tensor(338) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18089808523654938 and after 0.33922383189201355 +num_clicks 50 points_length: 2608 dynamic_size: 18 +filter out voxels: 280 +filter out voxels: 127952 +First batch: fn: 0.4616, fp: 0.0968, label 0: tensor(60), label 1: tensor(295) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18018503487110138 and after 0.34540677070617676 +num_clicks 50 points_length: 2531 dynamic_size: 13 +filter out voxels: 268 +filter out voxels: 127396 +First batch: fn: 0.4479, fp: 0.0940, label 0: tensor(61), label 1: tensor(360) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1802220493555069 and after 0.3543260991573334 +num_clicks 50 points_length: 2433 dynamic_size: 2 +filter out voxels: 265 +filter out voxels: 126012 +First batch: fn: 0.4245, fp: 0.0963, label 0: tensor(65), label 1: tensor(264) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17989328503608704 and after 0.3589576184749603 +num_clicks 50 points_length: 2374 dynamic_size: 14 +filter out voxels: 257 +filter out voxels: 125796 +First batch: fn: 0.4136, fp: 0.0946, label 0: tensor(67), label 1: tensor(388) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1803433895111084 and after 0.3654537796974182 +num_clicks 50 points_length: 2301 dynamic_size: 36 +filter out voxels: 265 +filter out voxels: 128258 +First batch: fn: 0.3941, fp: 0.0985, label 0: tensor(69), label 1: tensor(302) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17977850139141083 and after 0.3673548400402069 +epoch: 1/20, iter: 24/42: loss:3.8168: rank:-1 +[21:48:13.789] epoch: 1/20, iter: 24/42: loss:3.8168: rank:-1 +num_clicks 50 points_length: 131538 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7623607516288757 and after 0.72580885887146 +num_clicks 50 points_length: 40786 dynamic_size: 30 +filter out voxels: 247 +filter out voxels: 36 +First batch: fn: 0.5156, fp: 0.0793, label 0: tensor(504), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7579168677330017 and after 0.7343702912330627 +num_clicks 50 points_length: 39930 dynamic_size: 40 +filter out voxels: 195 +filter out voxels: 24 +First batch: fn: 0.5034, fp: 0.0711, label 0: tensor(505), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7603441476821899 and after 0.7393572330474854 +num_clicks 50 points_length: 38881 dynamic_size: 26 +filter out voxels: 203 +filter out voxels: 21 +First batch: fn: 0.4985, fp: 0.0684, label 0: tensor(502), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7596484422683716 and after 0.7489051222801208 +num_clicks 50 points_length: 38063 dynamic_size: 10 +filter out voxels: 198 +filter out voxels: 23 +First batch: fn: 0.4821, fp: 0.0648, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7590739727020264 and after 0.7554337978363037 +num_clicks 50 points_length: 36804 dynamic_size: 31 +filter out voxels: 184 +filter out voxels: 22 +First batch: fn: 0.4767, fp: 0.0582, label 0: tensor(503), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7602422833442688 and after 0.7589429616928101 +num_clicks 50 points_length: 35847 dynamic_size: 18 +filter out voxels: 201 +filter out voxels: 20 +First batch: fn: 0.4748, fp: 0.0551, label 0: tensor(502), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7581185102462769 and after 0.764227032661438 +num_clicks 50 points_length: 35174 dynamic_size: 10 +filter out voxels: 190 +filter out voxels: 21 +First batch: fn: 0.4671, fp: 0.0521, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7582608461380005 and after 0.7706055641174316 +num_clicks 50 points_length: 34301 dynamic_size: 21 +filter out voxels: 194 +filter out voxels: 19 +First batch: fn: 0.4576, fp: 0.0500, label 0: tensor(503), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7599597573280334 and after 0.7760971188545227 +num_clicks 50 points_length: 33670 dynamic_size: 19 +filter out voxels: 190 +filter out voxels: 19 +First batch: fn: 0.4489, fp: 0.0478, label 0: tensor(500), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7552251815795898 and after 0.7833216190338135 +num_clicks 50 points_length: 32771 dynamic_size: 21 +filter out voxels: 160 +filter out voxels: 19 +First batch: fn: 0.4383, fp: 0.0435, label 0: tensor(501), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7599436640739441 and after 0.7873632907867432 +epoch: 1/20, iter: 25/42: loss:2.2866: rank:-1 +[21:48:39.553] epoch: 1/20, iter: 25/42: loss:2.2866: rank:-1 +num_clicks 50 points_length: 572 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.057861682027578354 and after 0.06885374337434769 +num_clicks 50 points_length: 5115 dynamic_size: 28 +filter out voxels: 4861 +filter out voxels: 3357 +First batch: fn: 0.3112, fp: 8.6311, label 0: tensor(57), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06077348068356514 and after 0.08096905052661896 +num_clicks 50 points_length: 4560 dynamic_size: 7 +filter out voxels: 4343 +filter out voxels: 3594 +First batch: fn: 0.2657, fp: 7.7063, label 0: tensor(40), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.062358926981687546 and after 0.08357155323028564 +num_clicks 50 points_length: 4461 dynamic_size: 10 +filter out voxels: 4254 +filter out voxels: 3836 +First batch: fn: 0.2535, fp: 7.5455, label 0: tensor(25), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05956212431192398 and after 0.0814005583524704 +num_clicks 50 points_length: 4662 dynamic_size: 37 +filter out voxels: 4453 +filter out voxels: 3784 +First batch: fn: 0.2483, fp: 7.9021, label 0: tensor(66), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06271965801715851 and after 0.0857292115688324 +num_clicks 50 points_length: 4330 dynamic_size: 45 +filter out voxels: 4127 +filter out voxels: 3689 +First batch: fn: 0.2552, fp: 7.3147, label 0: tensor(69), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0628528818488121 and after 0.08751650154590607 +num_clicks 50 points_length: 4293 dynamic_size: 19 +filter out voxels: 4094 +filter out voxels: 3633 +First batch: fn: 0.2483, fp: 7.2570, label 0: tensor(47), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06248295679688454 and after 0.08746463805437088 +num_clicks 50 points_length: 4326 dynamic_size: 35 +filter out voxels: 4125 +filter out voxels: 3665 +First batch: fn: 0.2517, fp: 7.3112, label 0: tensor(64), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06291826069355011 and after 0.090966135263443 +num_clicks 50 points_length: 4148 dynamic_size: 36 +filter out voxels: 3950 +filter out voxels: 3566 +First batch: fn: 0.2500, fp: 7.0017, label 0: tensor(64), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06293335556983948 and after 0.09243583679199219 +num_clicks 50 points_length: 4153 dynamic_size: 5 +filter out voxels: 3961 +filter out voxels: 3511 +First batch: fn: 0.2395, fp: 7.0210, label 0: tensor(29), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.061116497963666916 and after 0.09131214022636414 +num_clicks 50 points_length: 4325 dynamic_size: 24 +filter out voxels: 4133 +filter out voxels: 3717 +First batch: fn: 0.2308, fp: 7.3304, label 0: tensor(55), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06264404952526093 and after 0.09382201731204987 +epoch: 1/20, iter: 26/42: loss:4.2865: rank:-1 +[21:48:50.613] epoch: 1/20, iter: 26/42: loss:4.2865: rank:-1 +num_clicks 50 points_length: 879 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19802778959274292 and after 0.2155567705631256 +num_clicks 50 points_length: 3591 dynamic_size: 10 +filter out voxels: 2708 +filter out voxels: 2408 +First batch: fn: 0.6985, fp: 3.3868, label 0: tensor(101), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20207861065864563 and after 0.24631363153457642 +num_clicks 50 points_length: 3214 dynamic_size: 48 +filter out voxels: 2415 +filter out voxels: 2365 +First batch: fn: 0.6621, fp: 2.9943, label 0: tensor(76), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19766581058502197 and after 0.2703421115875244 +num_clicks 50 points_length: 3184 dynamic_size: 22 +filter out voxels: 2433 +filter out voxels: 2243 +First batch: fn: 0.6064, fp: 3.0159, label 0: tensor(69), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19822987914085388 and after 0.2842405438423157 +num_clicks 50 points_length: 3119 dynamic_size: 16 +filter out voxels: 2391 +filter out voxels: 2369 +First batch: fn: 0.5882, fp: 2.9602, label 0: tensor(66), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20023179054260254 and after 0.2946786880493164 +num_clicks 50 points_length: 3007 dynamic_size: 17 +filter out voxels: 2308 +filter out voxels: 2384 +First batch: fn: 0.5711, fp: 2.8498, label 0: tensor(57), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19790685176849365 and after 0.30504900217056274 +num_clicks 50 points_length: 2996 dynamic_size: 25 +filter out voxels: 2316 +filter out voxels: 2234 +First batch: fn: 0.5529, fp: 2.8555, label 0: tensor(60), label 1: tensor(120) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19791658222675323 and after 0.31268468499183655 +num_clicks 50 points_length: 2961 dynamic_size: 49 +filter out voxels: 2291 +filter out voxels: 2322 +First batch: fn: 0.5370, fp: 2.8316, label 0: tensor(128), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20234903693199158 and after 0.3259687125682831 +num_clicks 50 points_length: 2759 dynamic_size: 13 +filter out voxels: 2106 +filter out voxels: 2197 +First batch: fn: 0.5370, fp: 2.6018, label 0: tensor(57), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1970996856689453 and after 0.33081692457199097 +num_clicks 50 points_length: 2850 dynamic_size: 38 +filter out voxels: 2203 +filter out voxels: 2191 +First batch: fn: 0.5267, fp: 2.7156, label 0: tensor(95), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19992581009864807 and after 0.34422722458839417 +num_clicks 50 points_length: 2699 dynamic_size: 30 +filter out voxels: 2071 +filter out voxels: 2145 +First batch: fn: 0.5176, fp: 2.5529, label 0: tensor(69), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1976603865623474 and after 0.35312122106552124 +epoch: 1/20, iter: 27/42: loss:3.64: rank:-1 +[21:49:02.678] epoch: 1/20, iter: 27/42: loss:3.64: rank:-1 +num_clicks 50 points_length: 10284 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(302) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3104924261569977 and after 0.2651352286338806 +num_clicks 50 points_length: 20095 dynamic_size: 31 +filter out voxels: 8785 +filter out voxels: 6585 +First batch: fn: 0.2108, fp: 1.7432, label 0: tensor(528), label 1: tensor(302) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3257138431072235 and after 0.29573822021484375 +num_clicks 50 points_length: 17381 dynamic_size: 33 +filter out voxels: 7322 +filter out voxels: 6215 +First batch: fn: 0.1874, fp: 1.5027, label 0: tensor(530), label 1: tensor(264) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3280089497566223 and after 0.3169941008090973 +num_clicks 50 points_length: 16202 dynamic_size: 33 +filter out voxels: 7100 +filter out voxels: 6219 +First batch: fn: 0.1697, fp: 1.4058, label 0: tensor(531), label 1: tensor(237) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3300177752971649 and after 0.3302614092826843 +num_clicks 50 points_length: 15412 dynamic_size: 1 +filter out voxels: 7015 +filter out voxels: 6143 +First batch: fn: 0.1552, fp: 1.3434, label 0: tensor(501), label 1: tensor(361) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32331380248069763 and after 0.345918208360672 +num_clicks 50 points_length: 15308 dynamic_size: 21 +filter out voxels: 7284 +filter out voxels: 6218 +First batch: fn: 0.1246, fp: 1.3640, label 0: tensor(519), label 1: tensor(158) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33405232429504395 and after 0.3627352714538574 +num_clicks 50 points_length: 13962 dynamic_size: 48 +filter out voxels: 6786 +filter out voxels: 6200 +First batch: fn: 0.1196, fp: 1.2380, label 0: tensor(545), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3338252604007721 and after 0.3760238289833069 +num_clicks 50 points_length: 13418 dynamic_size: 24 +filter out voxels: 6664 +filter out voxels: 6152 +First batch: fn: 0.1143, fp: 1.1905, label 0: tensor(521), label 1: tensor(193) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33071786165237427 and after 0.38318997621536255 +num_clicks 50 points_length: 13399 dynamic_size: 13 +filter out voxels: 6826 +filter out voxels: 6138 +First batch: fn: 0.1050, fp: 1.1979, label 0: tensor(510), label 1: tensor(198) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33324575424194336 and after 0.39868777990341187 +num_clicks 50 points_length: 12807 dynamic_size: 6 +filter out voxels: 6692 +filter out voxels: 6224 +First batch: fn: 0.0992, fp: 1.1461, label 0: tensor(459), label 1: tensor(169) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33499428629875183 and after 0.409748911857605 +num_clicks 50 points_length: 12432 dynamic_size: 22 +filter out voxels: 6616 +filter out voxels: 6230 +First batch: fn: 0.0981, fp: 1.1108, label 0: tensor(541), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.334870845079422 and after 0.4185517430305481 +epoch: 1/20, iter: 28/42: loss:3.2795: rank:-1 +[21:49:24.081] epoch: 1/20, iter: 28/42: loss:3.2795: rank:-1 +num_clicks 50 points_length: 7941 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(320) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1876397281885147 and after 0.2506365478038788 +num_clicks 50 points_length: 7948 dynamic_size: 2 +filter out voxels: 7 +filter out voxels: 263 +First batch: fn: 1.0000, fp: 0.0009, label 0: tensor(0), label 1: tensor(249) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19373445212841034 and after 0.2593255341053009 +num_clicks 50 points_length: 7947 dynamic_size: 15 +filter out voxels: 6 +filter out voxels: 263 +First batch: fn: 1.0000, fp: 0.0008, label 0: tensor(0), label 1: tensor(295) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19081752002239227 and after 0.2634122371673584 +num_clicks 50 points_length: 7948 dynamic_size: 5 +filter out voxels: 7 +filter out voxels: 241 +First batch: fn: 1.0000, fp: 0.0009, label 0: tensor(0), label 1: tensor(304) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18996916711330414 and after 0.2685481905937195 +num_clicks 50 points_length: 7947 dynamic_size: 20 +filter out voxels: 6 +filter out voxels: 231 +First batch: fn: 1.0000, fp: 0.0008, label 0: tensor(0), label 1: tensor(190) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18719211220741272 and after 0.26717355847358704 +num_clicks 50 points_length: 7947 dynamic_size: 4 +filter out voxels: 6 +filter out voxels: 215 +First batch: fn: 1.0000, fp: 0.0008, label 0: tensor(0), label 1: tensor(283) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1930065006017685 and after 0.27556079626083374 +num_clicks 50 points_length: 7947 dynamic_size: 42 +filter out voxels: 6 +filter out voxels: 248 +First batch: fn: 1.0000, fp: 0.0008, label 0: tensor(0), label 1: tensor(258) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19111326336860657 and after 0.2796405553817749 +num_clicks 50 points_length: 7947 dynamic_size: 24 +filter out voxels: 6 +filter out voxels: 231 +First batch: fn: 1.0000, fp: 0.0008, label 0: tensor(0), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18834690749645233 and after 0.2787635922431946 +num_clicks 50 points_length: 7947 dynamic_size: 27 +filter out voxels: 6 +filter out voxels: 215 +First batch: fn: 1.0000, fp: 0.0008, label 0: tensor(0), label 1: tensor(241) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19176757335662842 and after 0.28314968943595886 +num_clicks 50 points_length: 7947 dynamic_size: 1 +filter out voxels: 6 +filter out voxels: 233 +First batch: fn: 1.0000, fp: 0.0008, label 0: tensor(0), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19000154733657837 and after 0.2834102511405945 +num_clicks 50 points_length: 7947 dynamic_size: 21 +filter out voxels: 6 +filter out voxels: 230 +First batch: fn: 1.0000, fp: 0.0008, label 0: tensor(0), label 1: tensor(244) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19102580845355988 and after 0.28777310252189636 +epoch: 1/20, iter: 29/42: loss:3.3827: rank:-1 +[21:49:36.549] epoch: 1/20, iter: 29/42: loss:3.3827: rank:-1 +num_clicks 50 points_length: 7907 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2897951602935791 and after 0.4173034429550171 +num_clicks 50 points_length: 13000 dynamic_size: 19 +filter out voxels: 2066 +filter out voxels: 114 +First batch: fn: 0.8059, fp: 0.8382, label 0: tensor(380), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29407069087028503 and after 0.4461778700351715 +num_clicks 50 points_length: 11588 dynamic_size: 34 +filter out voxels: 1531 +filter out voxels: 90 +First batch: fn: 0.7764, fp: 0.6891, label 0: tensor(334), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2955508530139923 and after 0.4825746417045593 +num_clicks 50 points_length: 10994 dynamic_size: 38 +filter out voxels: 1558 +filter out voxels: 89 +First batch: fn: 0.7089, fp: 0.6815, label 0: tensor(321), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29642507433891296 and after 0.5073937773704529 +num_clicks 50 points_length: 10539 dynamic_size: 8 +filter out voxels: 1522 +filter out voxels: 90 +First batch: fn: 0.6742, fp: 0.6587, label 0: tensor(247), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2966504991054535 and after 0.5328102111816406 +num_clicks 50 points_length: 10126 dynamic_size: 14 +filter out voxels: 1537 +filter out voxels: 87 +First batch: fn: 0.6245, fp: 0.6561, label 0: tensor(303), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29700136184692383 and after 0.5536208748817444 +num_clicks 50 points_length: 9709 dynamic_size: 24 +filter out voxels: 1508 +filter out voxels: 87 +First batch: fn: 0.5907, fp: 0.6372, label 0: tensor(326), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2967338562011719 and after 0.5746226906776428 +num_clicks 50 points_length: 9257 dynamic_size: 47 +filter out voxels: 1438 +filter out voxels: 86 +First batch: fn: 0.5617, fp: 0.6091, label 0: tensor(302), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2994077503681183 and after 0.5893886089324951 +num_clicks 50 points_length: 9097 dynamic_size: 28 +filter out voxels: 1458 +filter out voxels: 87 +First batch: fn: 0.5422, fp: 0.6083, label 0: tensor(300), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2998315393924713 and after 0.6014947891235352 +num_clicks 50 points_length: 8811 dynamic_size: 10 +filter out voxels: 1424 +filter out voxels: 84 +First batch: fn: 0.5224, fp: 0.5919, label 0: tensor(246), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.30054712295532227 and after 0.6095746755599976 +num_clicks 50 points_length: 8703 dynamic_size: 10 +filter out voxels: 1449 +filter out voxels: 83 +First batch: fn: 0.5066, fp: 0.5940, label 0: tensor(339), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.299485981464386 and after 0.6185733079910278 +epoch: 1/20, iter: 30/42: loss:2.693: rank:-1 +[21:49:58.116] epoch: 1/20, iter: 30/42: loss:2.693: rank:-1 +num_clicks 50 points_length: 12095 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(384) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34452468156814575 and after 0.3621492385864258 +num_clicks 50 points_length: 21812 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 359 +First batch: fn: 0.7904, fp: 0.0029, label 0: tensor(84), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3492029905319214 and after 0.3782413601875305 +num_clicks 50 points_length: 21174 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 301 +First batch: fn: 0.7851, fp: 0.0024, label 0: tensor(75), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3499222993850708 and after 0.3904710114002228 +num_clicks 50 points_length: 20568 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 291 +First batch: fn: 0.7823, fp: 0.0022, label 0: tensor(68), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34863799810409546 and after 0.3965771198272705 +num_clicks 50 points_length: 20324 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 298 +First batch: fn: 0.7837, fp: 0.0020, label 0: tensor(65), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3502997159957886 and after 0.40508952736854553 +num_clicks 50 points_length: 20018 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 295 +First batch: fn: 0.7798, fp: 0.0020, label 0: tensor(61), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35017794370651245 and after 0.4111286997795105 +num_clicks 50 points_length: 19814 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 299 +First batch: fn: 0.7782, fp: 0.0019, label 0: tensor(48), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.350277841091156 and after 0.4176247715950012 +num_clicks 50 points_length: 19499 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 294 +First batch: fn: 0.7764, fp: 0.0018, label 0: tensor(70), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3502110242843628 and after 0.42281097173690796 +num_clicks 50 points_length: 19208 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 289 +First batch: fn: 0.7746, fp: 0.0016, label 0: tensor(55), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3492778539657593 and after 0.4263087511062622 +num_clicks 50 points_length: 19000 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 289 +First batch: fn: 0.7752, fp: 0.0015, label 0: tensor(49), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3498302102088928 and after 0.4304172396659851 +num_clicks 50 points_length: 18867 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 289 +First batch: fn: 0.7731, fp: 0.0016, label 0: tensor(56), label 1: tensor(534) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34985485672950745 and after 0.4350575804710388 +epoch: 1/20, iter: 31/42: loss:3.1584: rank:-1 +[21:50:18.337] epoch: 1/20, iter: 31/42: loss:3.1584: rank:-1 +num_clicks 50 points_length: 179 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.004209267906844616 and after 0.019340794533491135 +num_clicks 50 points_length: 6559 dynamic_size: 34 +filter out voxels: 14031 +filter out voxels: 6429 +First batch: fn: 0.9711, fp: 1.5384, label 0: tensor(21), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.004175584297627211 and after 0.022716429084539413 +num_clicks 50 points_length: 6273 dynamic_size: 16 +filter out voxels: 14167 +filter out voxels: 6157 +First batch: fn: 0.9697, fp: 1.5723, label 0: tensor(7), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.004119801335036755 and after 0.024050042033195496 +num_clicks 50 points_length: 6268 dynamic_size: 32 +filter out voxels: 14266 +filter out voxels: 6158 +First batch: fn: 0.9688, fp: 1.5891, label 0: tensor(17), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.003909124061465263 and after 0.02515297569334507 +num_clicks 50 points_length: 6003 dynamic_size: 14 +filter out voxels: 14095 +filter out voxels: 5894 +First batch: fn: 0.9679, fp: 1.5745, label 0: tensor(8), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.004110362846404314 and after 0.02667286992073059 +num_clicks 50 points_length: 6234 dynamic_size: 49 +filter out voxels: 14184 +filter out voxels: 6128 +First batch: fn: 0.9645, fp: 1.5822, label 0: tensor(33), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00384026812389493 and after 0.026456043124198914 +num_clicks 50 points_length: 6016 dynamic_size: 10 +filter out voxels: 13950 +filter out voxels: 5910 +First batch: fn: 0.9667, fp: 1.5565, label 0: tensor(7), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.004092182032763958 and after 0.028182007372379303 +num_clicks 50 points_length: 6282 dynamic_size: 22 +filter out voxels: 14180 +filter out voxels: 6178 +First batch: fn: 0.9627, fp: 1.5793, label 0: tensor(14), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0041771335527300835 and after 0.028652474284172058 +num_clicks 50 points_length: 6211 dynamic_size: 49 +filter out voxels: 14158 +filter out voxels: 6108 +First batch: fn: 0.9619, fp: 1.5754, label 0: tensor(30), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0038690376095473766 and after 0.028874080628156662 +num_clicks 50 points_length: 5965 dynamic_size: 9 +filter out voxels: 13982 +filter out voxels: 5864 +First batch: fn: 0.9634, fp: 1.5624, label 0: tensor(6), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.004250286612659693 and after 0.029985636472702026 +num_clicks 50 points_length: 6256 dynamic_size: 18 +filter out voxels: 14084 +filter out voxels: 6156 +First batch: fn: 0.9598, fp: 1.5714, label 0: tensor(12), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.004111684858798981 and after 0.03087257593870163 +epoch: 1/20, iter: 32/42: loss:4.1169: rank:-1 +[21:50:28.146] epoch: 1/20, iter: 32/42: loss:4.1169: rank:-1 +num_clicks 50 points_length: 14769 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(335) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19749198853969574 and after 0.19851426780223846 +num_clicks 50 points_length: 22563 dynamic_size: 10 +filter out voxels: 30761 +filter out voxels: 7234 +First batch: fn: 0.9963, fp: 0.1943, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18974345922470093 and after 0.20187732577323914 +num_clicks 50 points_length: 22636 dynamic_size: 26 +filter out voxels: 30926 +filter out voxels: 7632 +First batch: fn: 0.9965, fp: 0.1923, label 0: tensor(500), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18963925540447235 and after 0.21248939633369446 +num_clicks 50 points_length: 22065 dynamic_size: 6 +filter out voxels: 30899 +filter out voxels: 7631 +First batch: fn: 0.9965, fp: 0.1906, label 0: tensor(502), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18991470336914062 and after 0.22133560478687286 +num_clicks 50 points_length: 21644 dynamic_size: 1 +filter out voxels: 30879 +filter out voxels: 7612 +First batch: fn: 0.9965, fp: 0.1897, label 0: tensor(500), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1904028207063675 and after 0.22738613188266754 +num_clicks 50 points_length: 21355 dynamic_size: 18 +filter out voxels: 31061 +filter out voxels: 7628 +First batch: fn: 0.9965, fp: 0.1901, label 0: tensor(505), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19033896923065186 and after 0.23481500148773193 +num_clicks 50 points_length: 20908 dynamic_size: 35 +filter out voxels: 31029 +filter out voxels: 7597 +First batch: fn: 0.9964, fp: 0.1890, label 0: tensor(503), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19043000042438507 and after 0.2416219413280487 +num_clicks 50 points_length: 20544 dynamic_size: 25 +filter out voxels: 31021 +filter out voxels: 7585 +First batch: fn: 0.9964, fp: 0.1885, label 0: tensor(508), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.190471351146698 and after 0.24798306822776794 +num_clicks 50 points_length: 20146 dynamic_size: 14 +filter out voxels: 31086 +filter out voxels: 7541 +First batch: fn: 0.9964, fp: 0.1882, label 0: tensor(501), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19075950980186462 and after 0.25322115421295166 +num_clicks 50 points_length: 19965 dynamic_size: 28 +filter out voxels: 30881 +filter out voxels: 7586 +First batch: fn: 0.9963, fp: 0.1872, label 0: tensor(505), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19123652577400208 and after 0.25858867168426514 +num_clicks 50 points_length: 19663 dynamic_size: 9 +filter out voxels: 30866 +filter out voxels: 7567 +First batch: fn: 0.9963, fp: 0.1871, label 0: tensor(500), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1908416897058487 and after 0.2621551752090454 +epoch: 1/20, iter: 33/42: loss:5.9586: rank:-1 +[21:50:56.548] epoch: 1/20, iter: 33/42: loss:5.9586: rank:-1 +num_clicks 50 points_length: 22061 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2564135193824768 and after 0.2941353917121887 +num_clicks 50 points_length: 71820 dynamic_size: 9 +filter out voxels: 85864 +filter out voxels: 39 +First batch: fn: 0.8991, fp: 4.1652, label 0: tensor(126), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2591761648654938 and after 0.30328667163848877 +num_clicks 50 points_length: 71165 dynamic_size: 43 +filter out voxels: 86296 +filter out voxels: 27 +First batch: fn: 0.8632, fp: 4.2185, label 0: tensor(129), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25998929142951965 and after 0.3106417655944824 +num_clicks 50 points_length: 70597 dynamic_size: 35 +filter out voxels: 86137 +filter out voxels: 26 +First batch: fn: 0.8372, fp: 4.2030, label 0: tensor(120), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2601137161254883 and after 0.3213265538215637 +num_clicks 50 points_length: 70069 dynamic_size: 5 +filter out voxels: 86399 +filter out voxels: 27 +First batch: fn: 0.7905, fp: 4.2055, label 0: tensor(93), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2608460783958435 and after 0.3284316956996918 +num_clicks 50 points_length: 69591 dynamic_size: 29 +filter out voxels: 86534 +filter out voxels: 27 +First batch: fn: 0.7626, fp: 4.2033, label 0: tensor(117), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26053327322006226 and after 0.34099987149238586 +num_clicks 50 points_length: 68960 dynamic_size: 27 +filter out voxels: 86064 +filter out voxels: 26 +First batch: fn: 0.7087, fp: 4.1628, label 0: tensor(133), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26131486892700195 and after 0.35231757164001465 +num_clicks 50 points_length: 68522 dynamic_size: 33 +filter out voxels: 85860 +filter out voxels: 27 +First batch: fn: 0.6561, fp: 4.1444, label 0: tensor(136), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2613562047481537 and after 0.3604333996772766 +num_clicks 50 points_length: 68312 dynamic_size: 21 +filter out voxels: 84842 +filter out voxels: 25 +First batch: fn: 0.6187, fp: 4.0743, label 0: tensor(137), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2612285017967224 and after 0.3688807785511017 +num_clicks 50 points_length: 67530 dynamic_size: 23 +filter out voxels: 84978 +filter out voxels: 24 +First batch: fn: 0.5890, fp: 4.0714, label 0: tensor(144), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2606746554374695 and after 0.3783569037914276 +num_clicks 50 points_length: 66757 dynamic_size: 2 +filter out voxels: 85160 +filter out voxels: 21 +First batch: fn: 0.5522, fp: 4.0732, label 0: tensor(101), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26270943880081177 and after 0.3925076425075531 +epoch: 1/20, iter: 34/42: loss:3.4004: rank:-1 +[21:51:15.396] epoch: 1/20, iter: 34/42: loss:3.4004: rank:-1 +num_clicks 50 points_length: 50512 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8298671245574951 and after 0.830051064491272 +num_clicks 50 points_length: 20313 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 1456 +First batch: fn: 0.2294, fp: 0.0397, label 0: tensor(501), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8318578004837036 and after 0.8370069265365601 +num_clicks 50 points_length: 18714 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 1405 +First batch: fn: 0.2324, fp: 0.0359, label 0: tensor(506), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8323990702629089 and after 0.8425580263137817 +num_clicks 50 points_length: 17768 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 1355 +First batch: fn: 0.2298, fp: 0.0353, label 0: tensor(506), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8323355317115784 and after 0.8460928201675415 +num_clicks 50 points_length: 17254 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 1357 +First batch: fn: 0.2274, fp: 0.0347, label 0: tensor(502), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8318842649459839 and after 0.8495531678199768 +num_clicks 50 points_length: 16739 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 1364 +First batch: fn: 0.2253, fp: 0.0338, label 0: tensor(502), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8321001529693604 and after 0.8531661033630371 +num_clicks 50 points_length: 16171 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 1360 +First batch: fn: 0.2226, fp: 0.0336, label 0: tensor(507), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8330552577972412 and after 0.85608971118927 +num_clicks 50 points_length: 15729 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 1317 +First batch: fn: 0.2191, fp: 0.0339, label 0: tensor(506), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8331934213638306 and after 0.8593606948852539 +num_clicks 50 points_length: 15219 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 1283 +First batch: fn: 0.2172, fp: 0.0329, label 0: tensor(506), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8326195478439331 and after 0.86063551902771 +num_clicks 50 points_length: 15148 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 1311 +First batch: fn: 0.2148, fp: 0.0329, label 0: tensor(500), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8327994346618652 and after 0.863444447517395 +num_clicks 50 points_length: 14625 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 1264 +First batch: fn: 0.2136, fp: 0.0323, label 0: tensor(500), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8328102827072144 and after 0.8654257655143738 +epoch: 1/20, iter: 35/42: loss:2.0897: rank:-1 +[21:51:40.451] epoch: 1/20, iter: 35/42: loss:2.0897: rank:-1 +num_clicks 50 points_length: 27468 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4303527772426605 and after 0.4499638080596924 +num_clicks 50 points_length: 39084 dynamic_size: 16 +filter out voxels: 11720 +filter out voxels: 15372 +First batch: fn: 0.0196, fp: 1.6443, label 0: tensor(516), label 1: tensor(221) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45164644718170166 and after 0.48165595531463623 +num_clicks 50 points_length: 37785 dynamic_size: 35 +filter out voxels: 10059 +filter out voxels: 16048 +First batch: fn: 0.0143, fp: 1.5376, label 0: tensor(535), label 1: tensor(138) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4535170793533325 and after 0.5027689933776855 +num_clicks 50 points_length: 36310 dynamic_size: 19 +filter out voxels: 9771 +filter out voxels: 16077 +First batch: fn: 0.0118, fp: 1.5092, label 0: tensor(519), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4565534293651581 and after 0.518658459186554 +num_clicks 50 points_length: 35246 dynamic_size: 37 +filter out voxels: 9550 +filter out voxels: 16129 +First batch: fn: 0.0111, fp: 1.4812, label 0: tensor(537), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4596359431743622 and after 0.5314435958862305 +num_clicks 50 points_length: 34318 dynamic_size: 8 +filter out voxels: 9450 +filter out voxels: 16243 +First batch: fn: 0.0104, fp: 1.4714, label 0: tensor(508), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.460543155670166 and after 0.5420691967010498 +num_clicks 50 points_length: 33375 dynamic_size: 29 +filter out voxels: 9420 +filter out voxels: 16171 +First batch: fn: 0.0100, fp: 1.4645, label 0: tensor(529), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4628494381904602 and after 0.548048198223114 +num_clicks 50 points_length: 32918 dynamic_size: 25 +filter out voxels: 9348 +filter out voxels: 16134 +First batch: fn: 0.0093, fp: 1.4528, label 0: tensor(525), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45783984661102295 and after 0.5558004379272461 +num_clicks 50 points_length: 31930 dynamic_size: 43 +filter out voxels: 9668 +filter out voxels: 15986 +First batch: fn: 0.0090, fp: 1.4658, label 0: tensor(543), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4602922797203064 and after 0.562734842300415 +num_clicks 50 points_length: 31520 dynamic_size: 18 +filter out voxels: 9534 +filter out voxels: 16068 +First batch: fn: 0.0091, fp: 1.4465, label 0: tensor(518), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4607616364955902 and after 0.5675057768821716 +num_clicks 50 points_length: 31136 dynamic_size: 32 +filter out voxels: 9582 +filter out voxels: 16104 +First batch: fn: 0.0086, fp: 1.4444, label 0: tensor(532), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46228182315826416 and after 0.5730656385421753 +epoch: 1/20, iter: 36/42: loss:2.3034: rank:-1 +[21:51:59.536] epoch: 1/20, iter: 36/42: loss:2.3034: rank:-1 +num_clicks 50 points_length: 15281 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3008071780204773 and after 0.32002466917037964 +num_clicks 50 points_length: 23740 dynamic_size: 35 +filter out voxels: 22336 +filter out voxels: 19333 +First batch: fn: 0.6975, fp: 4.8099, label 0: tensor(369), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3065187633037567 and after 0.33897241950035095 +num_clicks 50 points_length: 22129 dynamic_size: 48 +filter out voxels: 22172 +filter out voxels: 17930 +First batch: fn: 0.6524, fp: 4.7383, label 0: tensor(239), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.309513121843338 and after 0.3492787480354309 +num_clicks 50 points_length: 21476 dynamic_size: 35 +filter out voxels: 22510 +filter out voxels: 17545 +First batch: fn: 0.6128, fp: 4.7741, label 0: tensor(420), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3090108036994934 and after 0.35977011919021606 +num_clicks 50 points_length: 21173 dynamic_size: 4 +filter out voxels: 22020 +filter out voxels: 17550 +First batch: fn: 0.5651, fp: 4.7180, label 0: tensor(299), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3096960186958313 and after 0.3710007071495056 +num_clicks 50 points_length: 20967 dynamic_size: 33 +filter out voxels: 22204 +filter out voxels: 17548 +First batch: fn: 0.4991, fp: 4.7366, label 0: tensor(255), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31264007091522217 and after 0.3795183002948761 +num_clicks 50 points_length: 20334 dynamic_size: 5 +filter out voxels: 22375 +filter out voxels: 17065 +First batch: fn: 0.4647, fp: 4.7522, label 0: tensor(261), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3101874887943268 and after 0.3822369873523712 +num_clicks 50 points_length: 20747 dynamic_size: 6 +filter out voxels: 22190 +filter out voxels: 17506 +First batch: fn: 0.4334, fp: 4.7342, label 0: tensor(218), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31278908252716064 and after 0.38844871520996094 +num_clicks 50 points_length: 20330 dynamic_size: 43 +filter out voxels: 22420 +filter out voxels: 17161 +First batch: fn: 0.4038, fp: 4.7575, label 0: tensor(301), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31154143810272217 and after 0.39242053031921387 +num_clicks 50 points_length: 20406 dynamic_size: 15 +filter out voxels: 21963 +filter out voxels: 17272 +First batch: fn: 0.3806, fp: 4.6894, label 0: tensor(180), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.310562402009964 and after 0.39359432458877563 +num_clicks 50 points_length: 20670 dynamic_size: 23 +filter out voxels: 22567 +filter out voxels: 17550 +First batch: fn: 0.3555, fp: 4.7512, label 0: tensor(276), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31018173694610596 and after 0.39745646715164185 +epoch: 1/20, iter: 37/42: loss:2.8798: rank:-1 +[21:52:20.837] epoch: 1/20, iter: 37/42: loss:2.8798: rank:-1 +num_clicks 50 points_length: 2964 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(243) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06476779282093048 and after 0.10045415163040161 +num_clicks 50 points_length: 8986 dynamic_size: 30 +filter out voxels: 24536 +filter out voxels: 2567 +First batch: fn: 0.5284, fp: 7.4546, label 0: tensor(186), label 1: tensor(366) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06045114994049072 and after 0.13625282049179077 +num_clicks 50 points_length: 7592 dynamic_size: 28 +filter out voxels: 24896 +filter out voxels: 1957 +First batch: fn: 0.4162, fp: 7.5909, label 0: tensor(223), label 1: tensor(282) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05921623855829239 and after 0.16833707690238953 +num_clicks 50 points_length: 7403 dynamic_size: 32 +filter out voxels: 24624 +filter out voxels: 2031 +First batch: fn: 0.3543, fp: 7.4845, label 0: tensor(211), label 1: tensor(253) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.059591565281152725 and after 0.18658210337162018 +num_clicks 50 points_length: 6937 dynamic_size: 16 +filter out voxels: 24533 +filter out voxels: 1929 +First batch: fn: 0.3183, fp: 7.4458, label 0: tensor(173), label 1: tensor(201) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05871710181236267 and after 0.20462258160114288 +num_clicks 50 points_length: 7288 dynamic_size: 49 +filter out voxels: 24494 +filter out voxels: 2169 +First batch: fn: 0.2984, fp: 7.4297, label 0: tensor(228), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05883681774139404 and after 0.21782779693603516 +num_clicks 50 points_length: 6958 dynamic_size: 28 +filter out voxels: 24432 +filter out voxels: 2088 +First batch: fn: 0.2846, fp: 7.4074, label 0: tensor(198), label 1: tensor(189) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05984239652752876 and after 0.23286999762058258 +num_clicks 50 points_length: 6191 dynamic_size: 16 +filter out voxels: 24439 +filter out voxels: 1796 +First batch: fn: 0.2749, fp: 7.4077, label 0: tensor(130), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.060708750039339066 and after 0.24059447646141052 +num_clicks 50 points_length: 5849 dynamic_size: 21 +filter out voxels: 24652 +filter out voxels: 1739 +First batch: fn: 0.2579, fp: 7.4815, label 0: tensor(201), label 1: tensor(233) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06092395633459091 and after 0.2508908212184906 +num_clicks 50 points_length: 5421 dynamic_size: 1 +filter out voxels: 24488 +filter out voxels: 1664 +First batch: fn: 0.2494, fp: 7.4250, label 0: tensor(144), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06101100519299507 and after 0.25640207529067993 +num_clicks 50 points_length: 5236 dynamic_size: 19 +filter out voxels: 24568 +filter out voxels: 1654 +First batch: fn: 0.2441, fp: 7.4502, label 0: tensor(190), label 1: tensor(267) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06285832822322845 and after 0.27340880036354065 +epoch: 1/20, iter: 38/42: loss:4.0638: rank:-1 +[21:52:36.082] epoch: 1/20, iter: 38/42: loss:4.0638: rank:-1 +num_clicks 50 points_length: 8527 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.292836993932724 and after 0.3324459493160248 +num_clicks 50 points_length: 37461 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 19057 +First batch: fn: 0.6045, fp: 0.0057, label 0: tensor(166), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2899783253669739 and after 0.3612748682498932 +num_clicks 50 points_length: 36725 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 19536 +First batch: fn: 0.6098, fp: 0.0043, label 0: tensor(209), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29806140065193176 and after 0.3906612992286682 +num_clicks 50 points_length: 35308 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 19271 +First batch: fn: 0.5953, fp: 0.0038, label 0: tensor(132), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29941532015800476 and after 0.4109739065170288 +num_clicks 50 points_length: 34669 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 19497 +First batch: fn: 0.5924, fp: 0.0041, label 0: tensor(148), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.30063679814338684 and after 0.42404717206954956 +num_clicks 50 points_length: 33597 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 19200 +First batch: fn: 0.5908, fp: 0.0037, label 0: tensor(125), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29538431763648987 and after 0.4320644736289978 +num_clicks 50 points_length: 32839 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 19026 +First batch: fn: 0.5940, fp: 0.0032, label 0: tensor(107), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3016108274459839 and after 0.4429839849472046 +num_clicks 50 points_length: 32694 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 19171 +First batch: fn: 0.5845, fp: 0.0036, label 0: tensor(129), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.30128219723701477 and after 0.44903120398521423 +num_clicks 50 points_length: 32025 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 18922 +First batch: fn: 0.5828, fp: 0.0035, label 0: tensor(151), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29573288559913635 and after 0.4512186348438263 +num_clicks 50 points_length: 31249 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 18603 +First batch: fn: 0.5871, fp: 0.0030, label 0: tensor(114), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3011678159236908 and after 0.4566846787929535 +num_clicks 50 points_length: 31393 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 18780 +First batch: fn: 0.5782, fp: 0.0036, label 0: tensor(128), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.300881028175354 and after 0.45853137969970703 +epoch: 1/20, iter: 39/42: loss:3.4877: rank:-1 +[21:52:55.971] epoch: 1/20, iter: 39/42: loss:3.4877: rank:-1 +num_clicks 50 points_length: 5322 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(201) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26896005868911743 and after 0.26971161365509033 +num_clicks 50 points_length: 17274 dynamic_size: 3 +filter out voxels: 25781 +filter out voxels: 5758 +First batch: fn: 0.2356, fp: 5.2704, label 0: tensor(300), label 1: tensor(254) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2686857283115387 and after 0.3147928714752197 +num_clicks 50 points_length: 16136 dynamic_size: 34 +filter out voxels: 26535 +filter out voxels: 5996 +First batch: fn: 0.1933, fp: 5.3465, label 0: tensor(259), label 1: tensor(314) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26622679829597473 and after 0.3640012741088867 +num_clicks 50 points_length: 14586 dynamic_size: 14 +filter out voxels: 26634 +filter out voxels: 5948 +First batch: fn: 0.1377, fp: 5.3209, label 0: tensor(229), label 1: tensor(189) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26663434505462646 and after 0.3820151686668396 +num_clicks 50 points_length: 13984 dynamic_size: 20 +filter out voxels: 26857 +filter out voxels: 5958 +First batch: fn: 0.1176, fp: 5.3408, label 0: tensor(291), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27310723066329956 and after 0.4114307165145874 +num_clicks 50 points_length: 13079 dynamic_size: 2 +filter out voxels: 25346 +filter out voxels: 5901 +First batch: fn: 0.1095, fp: 4.9767, label 0: tensor(248), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2721324563026428 and after 0.4224579632282257 +num_clicks 50 points_length: 12613 dynamic_size: 7 +filter out voxels: 25963 +filter out voxels: 5937 +First batch: fn: 0.1000, fp: 5.0862, label 0: tensor(255), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2729361355304718 and after 0.4390210509300232 +num_clicks 50 points_length: 11973 dynamic_size: 19 +filter out voxels: 25428 +filter out voxels: 5857 +First batch: fn: 0.0964, fp: 4.9669, label 0: tensor(183), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27142032980918884 and after 0.44626349210739136 +num_clicks 50 points_length: 11599 dynamic_size: 32 +filter out voxels: 26012 +filter out voxels: 5853 +First batch: fn: 0.0911, fp: 5.0808, label 0: tensor(313), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2755415439605713 and after 0.45992812514305115 +num_clicks 50 points_length: 11218 dynamic_size: 24 +filter out voxels: 24803 +filter out voxels: 5806 +First batch: fn: 0.0904, fp: 4.8331, label 0: tensor(214), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2709187865257263 and after 0.4630812704563141 +num_clicks 50 points_length: 10893 dynamic_size: 3 +filter out voxels: 26180 +filter out voxels: 5814 +First batch: fn: 0.0838, fp: 5.1064, label 0: tensor(177), label 1: tensor(158) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2697297930717468 and after 0.4686840772628784 +epoch: 1/20, iter: 40/42: loss:2.874: rank:-1 +[21:53:10.333] epoch: 1/20, iter: 40/42: loss:2.874: rank:-1 +num_clicks 50 points_length: 39484 dynamic_size: 5 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3423704504966736 and after 0.3445553183555603 +num_clicks 50 points_length: 36524 dynamic_size: 41 +filter out voxels: 1616 +First batch: fn: 0.7569, fp: 0.1682, label 0: tensor(317), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3458215296268463 and after 0.37279677391052246 +num_clicks 50 points_length: 35442 dynamic_size: 41 +filter out voxels: 1569 +First batch: fn: 0.7332, fp: 0.1644, label 0: tensor(294), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34492307901382446 and after 0.40213543176651 +num_clicks 50 points_length: 34269 dynamic_size: 38 +filter out voxels: 1534 +First batch: fn: 0.7081, fp: 0.1598, label 0: tensor(408), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3488546907901764 and after 0.42595306038856506 +num_clicks 50 points_length: 33293 dynamic_size: 7 +filter out voxels: 1521 +First batch: fn: 0.6872, fp: 0.1560, label 0: tensor(305), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3476143777370453 and after 0.45926177501678467 +num_clicks 50 points_length: 32009 dynamic_size: 11 +filter out voxels: 1484 +First batch: fn: 0.6557, fp: 0.1549, label 0: tensor(299), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34917858242988586 and after 0.48302024602890015 +num_clicks 50 points_length: 31071 dynamic_size: 2 +filter out voxels: 1494 +First batch: fn: 0.6324, fp: 0.1545, label 0: tensor(327), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3505554497241974 and after 0.5006505846977234 +num_clicks 50 points_length: 30319 dynamic_size: 8 +filter out voxels: 1506 +First batch: fn: 0.6151, fp: 0.1528, label 0: tensor(233), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3524675965309143 and after 0.5256519913673401 +num_clicks 50 points_length: 29337 dynamic_size: 20 +filter out voxels: 1507 +First batch: fn: 0.5883, fp: 0.1547, label 0: tensor(216), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3544920086860657 and after 0.5492280721664429 +num_clicks 50 points_length: 28322 dynamic_size: 4 +filter out voxels: 1531 +First batch: fn: 0.5630, fp: 0.1543, label 0: tensor(378), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.351196825504303 and after 0.5616809725761414 +num_clicks 50 points_length: 27661 dynamic_size: 41 +filter out voxels: 1473 +First batch: fn: 0.5511, fp: 0.1494, label 0: tensor(317), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.341905415058136 and after 0.5700859427452087 +epoch: 1/20, iter: 41/42: loss:2.6461: rank:-1 +[21:53:20.556] epoch: 1/20, iter: 41/42: loss:2.6461: rank:-1 +current lr: 3.9920800000000006e-05 +[21:53:20.557] - Train metrics: 3.5737934 +found empty patch +found empty patch +num_clicks 10 points_length: 2119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(190) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:53:24.272] dice before refine 0.003340480849146843 and after 0.015238719061017036, label 0: tensor(0, device='cuda:0'), label 1: tensor(190, device='cuda:0') +num_clicks 10 points_length: 48079 dynamic_size: 10 +filter out voxels: 45834 +First batch: fn: 0.8244, fp: 21.8650, label 0: tensor(53), label 1: tensor(372) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47636 dynamic_size: 10 +filter out voxels: 45856 +First batch: fn: 0.6196, fp: 21.8608, label 0: tensor(59), label 1: tensor(278) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46809 dynamic_size: 10 +filter out voxels: 45213 +First batch: fn: 0.5304, fp: 21.5597, label 0: tensor(55), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46172 dynamic_size: 10 +filter out voxels: 44678 +First batch: fn: 0.4795, fp: 21.3101, label 0: tensor(57), label 1: tensor(208) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46371 dynamic_size: 10 +filter out voxels: 44936 +First batch: fn: 0.4441, fp: 21.4394, label 0: tensor(74), label 1: tensor(259) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45966 dynamic_size: 10 +filter out voxels: 44589 +First batch: fn: 0.4158, fp: 21.2765, label 0: tensor(88), label 1: tensor(184) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48308 dynamic_size: 10 +filter out voxels: 46914 +First batch: fn: 0.3903, fp: 22.4073, label 0: tensor(110), label 1: tensor(228) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48227 dynamic_size: 10 +filter out voxels: 46890 +First batch: fn: 0.3766, fp: 22.3827, label 0: tensor(96), label 1: tensor(199) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48095 dynamic_size: 10 +filter out voxels: 46805 +First batch: fn: 0.3596, fp: 22.3374, label 0: tensor(130), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47290 dynamic_size: 10 +filter out voxels: 46012 +First batch: fn: 0.3591, fp: 21.9580, label 0: tensor(109), label 1: tensor(164) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:53:29.815] dice before refine 0.0018803725251927972 and after 0.0546722449362278, label 0: tensor(109, device='cuda:0'), label 1: tensor(164, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4016 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(384) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:53:30.268] dice before refine 0.000777076231315732 and after 0.05481570586562157, label 0: tensor(0, device='cuda:0'), label 1: tensor(384, device='cuda:0') +num_clicks 10 points_length: 33003 dynamic_size: 10 +filter out voxels: 27989 +First batch: fn: 0.7617, fp: 7.4562, label 0: tensor(238), label 1: tensor(471) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32950 dynamic_size: 10 +filter out voxels: 28491 +First batch: fn: 0.6541, fp: 7.5505, label 0: tensor(251), label 1: tensor(452) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32487 dynamic_size: 10 +filter out voxels: 28328 +First batch: fn: 0.5819, fp: 7.5075, label 0: tensor(190), label 1: tensor(438) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32577 dynamic_size: 10 +filter out voxels: 28638 +First batch: fn: 0.5254, fp: 7.5864, label 0: tensor(265), label 1: tensor(399) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31529 dynamic_size: 10 +filter out voxels: 27758 +First batch: fn: 0.5050, fp: 7.3459, label 0: tensor(258), label 1: tensor(412) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31232 dynamic_size: 10 +filter out voxels: 27591 +First batch: fn: 0.4768, fp: 7.3000, label 0: tensor(241), label 1: tensor(410) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31267 dynamic_size: 10 +filter out voxels: 27716 +First batch: fn: 0.4564, fp: 7.3292, label 0: tensor(320), label 1: tensor(412) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30750 dynamic_size: 10 +filter out voxels: 27308 +First batch: fn: 0.4415, fp: 7.2154, label 0: tensor(322), label 1: tensor(388) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30386 dynamic_size: 10 +filter out voxels: 27023 +First batch: fn: 0.4305, fp: 7.1357, label 0: tensor(245), label 1: tensor(440) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31175 dynamic_size: 10 +filter out voxels: 27844 +First batch: fn: 0.4176, fp: 7.3451, label 0: tensor(312), label 1: tensor(382) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:53:38.774] dice before refine 0.0005091811763122678 and after 0.1332227885723114, label 0: tensor(312, device='cuda:0'), label 1: tensor(382, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 343 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:53:39.135] dice before refine 0.026561731472611427 and after 0.023694733157753944, label 0: tensor(0, device='cuda:0'), label 1: tensor(36, device='cuda:0') +num_clicks 10 points_length: 26123 dynamic_size: 10 +filter out voxels: 25368 +First batch: fn: 0.0758, fp: 76.0845, label 0: tensor(219), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26581 dynamic_size: 10 +filter out voxels: 25968 +First batch: fn: 0.0554, fp: 77.4402, label 0: tensor(177), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26952 dynamic_size: 10 +filter out voxels: 26395 +First batch: fn: 0.0496, fp: 78.5277, label 0: tensor(131), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27035 dynamic_size: 10 +filter out voxels: 26486 +First batch: fn: 0.0496, fp: 78.7697, label 0: tensor(186), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26933 dynamic_size: 10 +filter out voxels: 26425 +First batch: fn: 0.0525, fp: 78.4694, label 0: tensor(104), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27098 dynamic_size: 10 +filter out voxels: 26599 +First batch: fn: 0.0496, fp: 78.9534, label 0: tensor(129), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27177 dynamic_size: 10 +filter out voxels: 26679 +First batch: fn: 0.0496, fp: 79.1837, label 0: tensor(162), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27031 dynamic_size: 10 +filter out voxels: 26561 +First batch: fn: 0.0525, fp: 78.7551, label 0: tensor(143), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26897 dynamic_size: 10 +filter out voxels: 26439 +First batch: fn: 0.0525, fp: 78.3644, label 0: tensor(119), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27074 dynamic_size: 10 +filter out voxels: 26600 +First batch: fn: 0.0496, fp: 78.8834, label 0: tensor(158), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:53:43.306] dice before refine 0.02675613760948181 and after 0.023605462163686752, label 0: tensor(158, device='cuda:0'), label 1: tensor(12, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 2248 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(253) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:53:43.726] dice before refine 0.01709246262907982 and after 0.030085531994700432, label 0: tensor(0, device='cuda:0'), label 1: tensor(253, device='cuda:0') +num_clicks 10 points_length: 32432 dynamic_size: 10 +filter out voxels: 8426 +First batch: fn: 0.7762, fp: 13.6508, label 0: tensor(510), label 1: tensor(303) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33400 dynamic_size: 10 +filter out voxels: 9334 +First batch: fn: 0.7015, fp: 14.1561, label 0: tensor(510), label 1: tensor(242) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32634 dynamic_size: 10 +filter out voxels: 9267 +First batch: fn: 0.6641, fp: 13.8528, label 0: tensor(510), label 1: tensor(222) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32213 dynamic_size: 10 +filter out voxels: 9168 +First batch: fn: 0.6241, fp: 13.7055, label 0: tensor(509), label 1: tensor(272) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32359 dynamic_size: 10 +filter out voxels: 9417 +First batch: fn: 0.5872, fp: 13.8074, label 0: tensor(510), label 1: tensor(255) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31626 dynamic_size: 10 +filter out voxels: 9259 +First batch: fn: 0.5645, fp: 13.5040, label 0: tensor(509), label 1: tensor(216) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31124 dynamic_size: 10 +filter out voxels: 9198 +First batch: fn: 0.5387, fp: 13.3065, label 0: tensor(510), label 1: tensor(200) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30502 dynamic_size: 10 +filter out voxels: 9087 +First batch: fn: 0.5311, fp: 13.0374, label 0: tensor(510), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30043 dynamic_size: 10 +filter out voxels: 8996 +First batch: fn: 0.5254, fp: 12.8390, label 0: tensor(509), label 1: tensor(264) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30534 dynamic_size: 10 +filter out voxels: 9315 +First batch: fn: 0.5147, fp: 13.0681, label 0: tensor(509), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:53:52.439] dice before refine 0.01608228124678135 and after 0.07126905769109726, label 0: tensor(509, device='cuda:0'), label 1: tensor(153, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3675 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(287) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:53:52.860] dice before refine 0.0 and after 0.06913086771965027, label 0: tensor(0, device='cuda:0'), label 1: tensor(287, device='cuda:0') +num_clicks 10 points_length: 4659 dynamic_size: 10 +filter out voxels: 1154 +First batch: fn: 0.9529, fp: 0.3148, label 0: tensor(5), label 1: tensor(426) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4518 dynamic_size: 10 +filter out voxels: 1360 +First batch: fn: 0.8509, fp: 0.3785, label 0: tensor(23), label 1: tensor(454) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4034 dynamic_size: 10 +filter out voxels: 1145 +First batch: fn: 0.7714, fp: 0.3263, label 0: tensor(46), label 1: tensor(458) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3759 dynamic_size: 10 +filter out voxels: 1077 +First batch: fn: 0.7129, fp: 0.3099, label 0: tensor(46), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3580 dynamic_size: 10 +filter out voxels: 1082 +First batch: fn: 0.6558, fp: 0.3184, label 0: tensor(53), label 1: tensor(407) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3392 dynamic_size: 10 +filter out voxels: 1029 +First batch: fn: 0.6171, fp: 0.3059, label 0: tensor(57), label 1: tensor(405) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3308 dynamic_size: 10 +filter out voxels: 1019 +First batch: fn: 0.5916, fp: 0.3086, label 0: tensor(72), label 1: tensor(410) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3211 dynamic_size: 10 +filter out voxels: 987 +First batch: fn: 0.5733, fp: 0.3004, label 0: tensor(62), label 1: tensor(365) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3159 dynamic_size: 10 +filter out voxels: 981 +First batch: fn: 0.5576, fp: 0.3020, label 0: tensor(72), label 1: tensor(325) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3075 dynamic_size: 10 +filter out voxels: 934 +First batch: fn: 0.5475, fp: 0.2893, label 0: tensor(73), label 1: tensor(366) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:53:59.419] dice before refine 0.0 and after 0.5300309658050537, label 0: tensor(73, device='cuda:0'), label 1: tensor(366, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.04953528822145679 +[21:53:59.933] epoch: 1/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.04953528822145679 stich left and right side (total size): 1 +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:00.468] dice before refine 0.0005402219831012189 and after 0.00018795226060319692, label 0: tensor(0, device='cuda:0'), label 1: tensor(108, device='cuda:0') +num_clicks 10 points_length: 42556 dynamic_size: 10 +filter out voxels: 26657 +First batch: fn: 0.9987, fp: 12.5541, label 0: tensor(509), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42430 dynamic_size: 10 +filter out voxels: 25510 +First batch: fn: 0.9952, fp: 12.5175, label 0: tensor(510), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42661 dynamic_size: 10 +filter out voxels: 25501 +First batch: fn: 0.9933, fp: 12.5930, label 0: tensor(508), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42891 dynamic_size: 10 +filter out voxels: 25923 +First batch: fn: 0.9904, fp: 12.6691, label 0: tensor(510), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42546 dynamic_size: 10 +filter out voxels: 25841 +First batch: fn: 0.9869, fp: 12.5627, label 0: tensor(509), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40903 dynamic_size: 10 +filter out voxels: 25273 +First batch: fn: 0.9892, fp: 12.0373, label 0: tensor(509), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40039 dynamic_size: 10 +filter out voxels: 25245 +First batch: fn: 0.9917, fp: 11.7596, label 0: tensor(509), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40192 dynamic_size: 10 +filter out voxels: 25594 +First batch: fn: 0.9895, fp: 11.8105, label 0: tensor(510), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40419 dynamic_size: 10 +filter out voxels: 26101 +First batch: fn: 0.9777, fp: 11.8946, label 0: tensor(509), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39656 dynamic_size: 10 +filter out voxels: 25890 +First batch: fn: 0.9732, fp: 11.6561, label 0: tensor(510), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:07.602] dice before refine 0.00045618126750923693 and after 0.005249076522886753, label 0: tensor(510, device='cuda:0'), label 1: tensor(107, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:07.972] dice before refine 0.039232052862644196 and after 0.04670967161655426, label 0: tensor(0, device='cuda:0'), label 1: tensor(99, device='cuda:0') +num_clicks 10 points_length: 52165 dynamic_size: 10 +filter out voxels: 27298 +First batch: fn: 0.5930, fp: 16.0201, label 0: tensor(510), label 1: tensor(239) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50966 dynamic_size: 10 +filter out voxels: 26224 +First batch: fn: 0.5306, fp: 15.7006, label 0: tensor(510), label 1: tensor(175) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50173 dynamic_size: 10 +filter out voxels: 25897 +First batch: fn: 0.4917, fp: 15.4869, label 0: tensor(510), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49132 dynamic_size: 10 +filter out voxels: 25539 +First batch: fn: 0.4745, fp: 15.1726, label 0: tensor(510), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49189 dynamic_size: 10 +filter out voxels: 25913 +First batch: fn: 0.4433, fp: 15.2220, label 0: tensor(510), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49049 dynamic_size: 10 +filter out voxels: 25984 +First batch: fn: 0.4277, fp: 15.1930, label 0: tensor(510), label 1: tensor(160) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47859 dynamic_size: 10 +filter out voxels: 25339 +First batch: fn: 0.3818, fp: 14.8599, label 0: tensor(510), label 1: tensor(176) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48414 dynamic_size: 10 +filter out voxels: 25879 +First batch: fn: 0.3987, fp: 15.0197, label 0: tensor(509), label 1: tensor(183) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48120 dynamic_size: 10 +filter out voxels: 25862 +First batch: fn: 0.3911, fp: 14.9338, label 0: tensor(510), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47833 dynamic_size: 10 +filter out voxels: 25813 +First batch: fn: 0.3806, fp: 14.8529, label 0: tensor(510), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:15.565] dice before refine 0.03959696739912033 and after 0.07602180540561676, label 0: tensor(510, device='cuda:0'), label 1: tensor(179, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:15.974] dice before refine 0.001134816207922995 and after 0.0007874015718698502, label 0: tensor(0, device='cuda:0'), label 1: tensor(155, device='cuda:0') +num_clicks 10 points_length: 38070 dynamic_size: 10 +filter out voxels: 29955 +First batch: fn: 0.9952, fp: 11.1290, label 0: tensor(509), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34272 dynamic_size: 10 +filter out voxels: 27916 +First batch: fn: 1.0000, fp: 9.9146, label 0: tensor(356), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34199 dynamic_size: 10 +filter out voxels: 28082 +First batch: fn: 0.9990, fp: 9.8924, label 0: tensor(307), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33127 dynamic_size: 10 +filter out voxels: 27176 +First batch: fn: 0.9971, fp: 9.5529, label 0: tensor(323), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32934 dynamic_size: 10 +filter out voxels: 27273 +First batch: fn: 0.9971, fp: 9.4914, label 0: tensor(318), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32440 dynamic_size: 10 +filter out voxels: 27077 +First batch: fn: 0.9971, fp: 9.3341, label 0: tensor(302), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32334 dynamic_size: 10 +filter out voxels: 27120 +First batch: fn: 0.9943, fp: 9.3032, label 0: tensor(253), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32352 dynamic_size: 10 +filter out voxels: 27230 +First batch: fn: 0.9914, fp: 9.3118, label 0: tensor(238), label 1: tensor(120) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32240 dynamic_size: 10 +filter out voxels: 27202 +First batch: fn: 0.9822, fp: 9.2853, label 0: tensor(259), label 1: tensor(214) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32542 dynamic_size: 10 +filter out voxels: 27586 +First batch: fn: 0.9354, fp: 9.4283, label 0: tensor(294), label 1: tensor(192) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:22.079] dice before refine 0.0007910188869573176 and after 0.016381919384002686, label 0: tensor(294, device='cuda:0'), label 1: tensor(192, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:22.453] dice before refine 0.034989919513463974 and after 0.04875690117478371, label 0: tensor(0, device='cuda:0'), label 1: tensor(121, device='cuda:0') +num_clicks 10 points_length: 37381 dynamic_size: 10 +filter out voxels: 21787 +First batch: fn: 0.6949, fp: 11.2099, label 0: tensor(509), label 1: tensor(324) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33203 dynamic_size: 10 +filter out voxels: 18903 +First batch: fn: 0.5971, fp: 9.9771, label 0: tensor(510), label 1: tensor(323) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32768 dynamic_size: 10 +filter out voxels: 19043 +First batch: fn: 0.5083, fp: 9.9274, label 0: tensor(509), label 1: tensor(160) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30846 dynamic_size: 10 +filter out voxels: 18230 +First batch: fn: 0.4968, fp: 9.3268, label 0: tensor(510), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30358 dynamic_size: 10 +filter out voxels: 18324 +First batch: fn: 0.4885, fp: 9.1796, label 0: tensor(510), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29377 dynamic_size: 10 +filter out voxels: 18021 +First batch: fn: 0.4755, fp: 8.8803, label 0: tensor(510), label 1: tensor(207) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29359 dynamic_size: 10 +filter out voxels: 18334 +First batch: fn: 0.4694, fp: 8.8806, label 0: tensor(510), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29139 dynamic_size: 10 +filter out voxels: 18443 +First batch: fn: 0.4564, fp: 8.8236, label 0: tensor(510), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28302 dynamic_size: 10 +filter out voxels: 18242 +First batch: fn: 0.4424, fp: 8.5710, label 0: tensor(510), label 1: tensor(184) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27626 dynamic_size: 10 +filter out voxels: 18031 +First batch: fn: 0.4376, fp: 8.3605, label 0: tensor(509), label 1: tensor(201) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:30.206] dice before refine 0.03728582710027695 and after 0.11566172540187836, label 0: tensor(509, device='cuda:0'), label 1: tensor(201, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +0.06609219448132948 +[21:54:31.530] epoch: 1/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.06609219448132948 stich left and right side (total size): 1 +num_clicks 10 points_length: 23364 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:32.052] dice before refine 0.1727641075849533 and after 0.22971299290657043, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 29227 dynamic_size: 10 +filter out voxels: 9862 +First batch: fn: 0.8135, fp: 0.4375, label 0: tensor(90), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28981 dynamic_size: 10 +filter out voxels: 11216 +First batch: fn: 0.7379, fp: 0.5025, label 0: tensor(106), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27133 dynamic_size: 10 +filter out voxels: 10175 +First batch: fn: 0.7197, fp: 0.4417, label 0: tensor(47), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26653 dynamic_size: 10 +filter out voxels: 10899 +First batch: fn: 0.6627, fp: 0.4780, label 0: tensor(61), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25583 dynamic_size: 10 +filter out voxels: 10521 +First batch: fn: 0.6342, fp: 0.4608, label 0: tensor(92), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24159 dynamic_size: 10 +filter out voxels: 9908 +First batch: fn: 0.6032, fp: 0.4308, label 0: tensor(49), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23788 dynamic_size: 10 +filter out voxels: 10306 +First batch: fn: 0.5635, fp: 0.4547, label 0: tensor(96), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22472 dynamic_size: 10 +filter out voxels: 9791 +First batch: fn: 0.5344, fp: 0.4274, label 0: tensor(48), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22373 dynamic_size: 10 +filter out voxels: 10384 +First batch: fn: 0.5033, fp: 0.4542, label 0: tensor(116), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21591 dynamic_size: 10 +filter out voxels: 10045 +First batch: fn: 0.4811, fp: 0.4430, label 0: tensor(55), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:39.199] dice before refine 0.2290586233139038 and after 0.5419644117355347, label 0: tensor(55, device='cuda:0'), label 1: tensor(504, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 88105 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:39.765] dice before refine 0.6828361749649048 and after 0.7100183963775635, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 40928 dynamic_size: 10 +filter out voxels: 433 +First batch: fn: 0.4313, fp: 0.0332, label 0: tensor(449), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37288 dynamic_size: 10 +filter out voxels: 280 +First batch: fn: 0.4007, fp: 0.0225, label 0: tensor(322), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35903 dynamic_size: 10 +filter out voxels: 266 +First batch: fn: 0.3871, fp: 0.0204, label 0: tensor(306), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34836 dynamic_size: 10 +filter out voxels: 254 +First batch: fn: 0.3767, fp: 0.0186, label 0: tensor(291), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33453 dynamic_size: 10 +filter out voxels: 268 +First batch: fn: 0.3610, fp: 0.0187, label 0: tensor(375), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31902 dynamic_size: 10 +filter out voxels: 208 +First batch: fn: 0.3461, fp: 0.0160, label 0: tensor(252), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31371 dynamic_size: 10 +filter out voxels: 136 +First batch: fn: 0.3433, fp: 0.0128, label 0: tensor(285), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30898 dynamic_size: 10 +filter out voxels: 92 +First batch: fn: 0.3395, fp: 0.0112, label 0: tensor(260), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30314 dynamic_size: 10 +filter out voxels: 87 +First batch: fn: 0.3330, fp: 0.0111, label 0: tensor(256), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28816 dynamic_size: 10 +filter out voxels: 144 +First batch: fn: 0.3135, fp: 0.0136, label 0: tensor(346), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:49.607] dice before refine 0.7210025787353516 and after 0.812035083770752, label 0: tensor(346, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 204709 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:50.287] dice before refine 0.43470498919487 and after 0.443069726228714, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 146564 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7152, fp: 0.0008, label 0: tensor(43), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 144157 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7038, fp: 0.0004, label 0: tensor(26), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 142674 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6966, fp: 0.0003, label 0: tensor(22), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 141600 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6914, fp: 0.0003, label 0: tensor(26), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 141070 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6888, fp: 0.0003, label 0: tensor(21), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 140115 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6842, fp: 0.0003, label 0: tensor(31), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 139709 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6822, fp: 0.0003, label 0: tensor(31), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 139227 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6798, fp: 0.0003, label 0: tensor(28), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 138547 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6766, fp: 0.0002, label 0: tensor(26), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 138011 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6739, fp: 0.0002, label 0: tensor(31), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:58.651] dice before refine 0.45325762033462524 and after 0.49985530972480774, label 0: tensor(31, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 347521 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:54:59.489] dice before refine 0.3868134319782257 and after 0.43968045711517334, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 251881 dynamic_size: 10 +filter out voxels: 333 +First batch: fn: 0.7156, fp: 0.0092, label 0: tensor(332), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 248592 dynamic_size: 10 +filter out voxels: 217 +First batch: fn: 0.7098, fp: 0.0055, label 0: tensor(264), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 242406 dynamic_size: 10 +filter out voxels: 197 +First batch: fn: 0.6932, fp: 0.0043, label 0: tensor(208), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 242888 dynamic_size: 10 +filter out voxels: 140 +First batch: fn: 0.6963, fp: 0.0026, label 0: tensor(120), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 237200 dynamic_size: 10 +filter out voxels: 161 +First batch: fn: 0.6797, fp: 0.0029, label 0: tensor(185), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 236062 dynamic_size: 10 +filter out voxels: 138 +First batch: fn: 0.6770, fp: 0.0023, label 0: tensor(182), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 238449 dynamic_size: 10 +filter out voxels: 110 +First batch: fn: 0.6848, fp: 0.0013, label 0: tensor(83), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 233478 dynamic_size: 10 +filter out voxels: 124 +First batch: fn: 0.6701, fp: 0.0017, label 0: tensor(131), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 231673 dynamic_size: 10 +filter out voxels: 121 +First batch: fn: 0.6652, fp: 0.0015, label 0: tensor(105), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 230501 dynamic_size: 10 +filter out voxels: 116 +First batch: fn: 0.6619, fp: 0.0014, label 0: tensor(97), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:10.330] dice before refine 0.42541539669036865 and after 0.5145308375358582, label 0: tensor(97, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25099 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:10.785] dice before refine 0.13374046981334686 and after 0.12191975116729736, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 27224 dynamic_size: 10 +filter out voxels: 1378 +First batch: fn: 0.9247, fp: 0.1600, label 0: tensor(290), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26386 dynamic_size: 10 +filter out voxels: 1203 +First batch: fn: 0.9226, fp: 0.1287, label 0: tensor(295), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25992 dynamic_size: 10 +filter out voxels: 1208 +First batch: fn: 0.9200, fp: 0.1156, label 0: tensor(272), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25354 dynamic_size: 10 +filter out voxels: 1163 +First batch: fn: 0.9087, fp: 0.1015, label 0: tensor(232), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25040 dynamic_size: 10 +filter out voxels: 1219 +First batch: fn: 0.8987, fp: 0.0990, label 0: tensor(193), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24814 dynamic_size: 10 +filter out voxels: 1308 +First batch: fn: 0.8861, fp: 0.1026, label 0: tensor(179), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24058 dynamic_size: 10 +filter out voxels: 1222 +First batch: fn: 0.8659, fp: 0.0926, label 0: tensor(156), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24113 dynamic_size: 10 +filter out voxels: 1433 +First batch: fn: 0.8497, fp: 0.1110, label 0: tensor(209), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22988 dynamic_size: 10 +filter out voxels: 1203 +First batch: fn: 0.8278, fp: 0.0881, label 0: tensor(176), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22412 dynamic_size: 10 +filter out voxels: 1253 +First batch: fn: 0.8014, fp: 0.0916, label 0: tensor(161), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:19.371] dice before refine 0.13193561136722565 and after 0.33539244532585144, label 0: tensor(161, device='cuda:0'), label 1: tensor(507, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 82461 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:19.946] dice before refine 0.09640924632549286 and after 0.07208490371704102, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 79475 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.9626, fp: 0.0012, label 0: tensor(65), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 79022 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.9573, fp: 0.0010, label 0: tensor(56), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 78085 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.9459, fp: 0.0010, label 0: tensor(44), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 77073 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.9336, fp: 0.0011, label 0: tensor(46), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76681 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.9287, fp: 0.0012, label 0: tensor(57), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9218, fp: 0.0010, label 0: tensor(53), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75771 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9178, fp: 0.0011, label 0: tensor(56), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75202 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9107, fp: 0.0013, label 0: tensor(63), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75231 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9111, fp: 0.0012, label 0: tensor(74), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74869 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9067, fp: 0.0013, label 0: tensor(73), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:28.424] dice before refine 0.10521295666694641 and after 0.18768863379955292, label 0: tensor(73, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 308412 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:29.201] dice before refine 0.4189198613166809 and after 0.44261839985847473, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 220926 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7156, fp: 0.0008, label 0: tensor(76), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 215728 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6989, fp: 0.0005, label 0: tensor(64), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 214166 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6939, fp: 0.0005, label 0: tensor(45), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 213013 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6902, fp: 0.0005, label 0: tensor(57), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 211517 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6853, fp: 0.0005, label 0: tensor(64), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 211625 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6857, fp: 0.0004, label 0: tensor(63), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 210709 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6828, fp: 0.0004, label 0: tensor(56), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 210198 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6811, fp: 0.0004, label 0: tensor(55), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 210353 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6817, fp: 0.0004, label 0: tensor(61), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 210549 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6823, fp: 0.0004, label 0: tensor(47), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:38.695] dice before refine 0.44351834058761597 and after 0.485770583152771, label 0: tensor(47, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 355661 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:39.525] dice before refine 0.22443927824497223 and after 0.23095321655273438, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 311244 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8686, fp: 0.0065, label 0: tensor(411), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 309145 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8640, fp: 0.0052, label 0: tensor(413), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 308310 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8630, fp: 0.0038, label 0: tensor(326), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 306676 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8587, fp: 0.0035, label 0: tensor(291), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 305494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8558, fp: 0.0031, label 0: tensor(387), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 304173 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8526, fp: 0.0027, label 0: tensor(246), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 303237 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8501, fp: 0.0025, label 0: tensor(187), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 301690 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8458, fp: 0.0024, label 0: tensor(193), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 301694 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8460, fp: 0.0023, label 0: tensor(190), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 301506 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8456, fp: 0.0022, label 0: tensor(233), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:51.994] dice before refine 0.23984569311141968 and after 0.26615944504737854, label 0: tensor(233, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.4145325070077723 +[21:55:52.671] epoch: 1/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.4145325070077723 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:53.187] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 108 dynamic_size: 10 +filter out voxels: 75 +First batch: fn: 1.0000, fp: 2.2727, label 0: tensor(5), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74 dynamic_size: 10 +filter out voxels: 41 +First batch: fn: 1.0000, fp: 1.2424, label 0: tensor(6), label 1: tensor(4) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 66 dynamic_size: 10 +filter out voxels: 33 +First batch: fn: 1.0000, fp: 1.0000, label 0: tensor(4), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74 dynamic_size: 10 +filter out voxels: 41 +First batch: fn: 1.0000, fp: 1.2424, label 0: tensor(5), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 1.0000, fp: 0.8182, label 0: tensor(2), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 73 dynamic_size: 10 +filter out voxels: 40 +First batch: fn: 1.0000, fp: 1.2121, label 0: tensor(7), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53 dynamic_size: 10 +filter out voxels: 20 +First batch: fn: 1.0000, fp: 0.6061, label 0: tensor(1), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 73 dynamic_size: 10 +filter out voxels: 40 +First batch: fn: 1.0000, fp: 1.2121, label 0: tensor(4), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 1.0000, fp: 0.7576, label 0: tensor(3), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 63 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 1.0000, fp: 0.9091, label 0: tensor(3), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:56.031] dice before refine 0.0 and after 0.0, label 0: tensor(3, device='cuda:0'), label 1: tensor(7, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:56.407] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 70 dynamic_size: 10 +filter out voxels: 37 +First batch: fn: 1.0000, fp: 1.1212, label 0: tensor(7), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 1.0000, fp: 0.1212, label 0: tensor(1), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53 dynamic_size: 10 +filter out voxels: 20 +First batch: fn: 1.0000, fp: 0.6061, label 0: tensor(5), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 1.0000, fp: 0.2121, label 0: tensor(3), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 1.0000, fp: 0.3030, label 0: tensor(2), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 1.0000, fp: 0.4242, label 0: tensor(3), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 1.0000, fp: 0.2727, label 0: tensor(1), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 1.0000, fp: 0.5152, label 0: tensor(5), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 1.0000, fp: 0.1212, label 0: tensor(1), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 1.0000, fp: 0.4242, label 0: tensor(2), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:55:59.260] dice before refine 0.0 and after 0.0, label 0: tensor(2, device='cuda:0'), label 1: tensor(8, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.0 +[21:55:59.638] epoch: 1/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:00.100] dice before refine 0.0 and after 0.010077178478240967, label 0: tensor(0, device='cuda:0'), label 1: tensor(155, device='cuda:0') +num_clicks 10 points_length: 24755 dynamic_size: 10 +filter out voxels: 23384 +First batch: fn: 0.9103, fp: 16.7215, label 0: tensor(35), label 1: tensor(280) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25896 dynamic_size: 10 +filter out voxels: 24844 +First batch: fn: 0.7001, fp: 17.7443, label 0: tensor(36), label 1: tensor(240) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25502 dynamic_size: 10 +filter out voxels: 24613 +First batch: fn: 0.5897, fp: 17.5741, label 0: tensor(35), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24995 dynamic_size: 10 +filter out voxels: 24137 +First batch: fn: 0.5670, fp: 17.2358, label 0: tensor(31), label 1: tensor(210) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25146 dynamic_size: 10 +filter out voxels: 24415 +First batch: fn: 0.4608, fp: 17.4494, label 0: tensor(42), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24395 dynamic_size: 10 +filter out voxels: 23693 +First batch: fn: 0.4444, fp: 16.9309, label 0: tensor(44), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23936 dynamic_size: 10 +filter out voxels: 23255 +First batch: fn: 0.4295, fp: 16.6189, label 0: tensor(36), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24308 dynamic_size: 10 +filter out voxels: 23636 +First batch: fn: 0.4145, fp: 16.8989, label 0: tensor(43), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23927 dynamic_size: 10 +filter out voxels: 23264 +First batch: fn: 0.4088, fp: 16.6332, label 0: tensor(30), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24632 dynamic_size: 10 +filter out voxels: 24001 +First batch: fn: 0.3768, fp: 17.1674, label 0: tensor(39), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:04.527] dice before refine 0.0 and after 0.06718818098306656, label 0: tensor(39, device='cuda:0'), label 1: tensor(75, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4392 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:04.944] dice before refine 0.040945131331682205 and after 0.12534186244010925, label 0: tensor(0, device='cuda:0'), label 1: tensor(506, device='cuda:0') +num_clicks 10 points_length: 18869 dynamic_size: 10 +filter out voxels: 15649 +First batch: fn: 0.6922, fp: 3.6041, label 0: tensor(28), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19165 dynamic_size: 10 +filter out voxels: 16622 +First batch: fn: 0.5383, fp: 3.8254, label 0: tensor(47), label 1: tensor(300) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18468 dynamic_size: 10 +filter out voxels: 16159 +First batch: fn: 0.4841, fp: 3.7209, label 0: tensor(49), label 1: tensor(323) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18215 dynamic_size: 10 +filter out voxels: 16137 +First batch: fn: 0.4242, fp: 3.7231, label 0: tensor(70), label 1: tensor(375) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17912 dynamic_size: 10 +filter out voxels: 16036 +First batch: fn: 0.3768, fp: 3.7015, label 0: tensor(72), label 1: tensor(319) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17606 dynamic_size: 10 +filter out voxels: 15862 +First batch: fn: 0.3490, fp: 3.6596, label 0: tensor(87), label 1: tensor(256) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17219 dynamic_size: 10 +filter out voxels: 15551 +First batch: fn: 0.3402, fp: 3.5804, label 0: tensor(77), label 1: tensor(283) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17180 dynamic_size: 10 +filter out voxels: 15613 +First batch: fn: 0.3219, fp: 3.5897, label 0: tensor(57), label 1: tensor(322) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17402 dynamic_size: 10 +filter out voxels: 15930 +First batch: fn: 0.2962, fp: 3.6660, label 0: tensor(82), label 1: tensor(221) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16791 dynamic_size: 10 +filter out voxels: 15344 +First batch: fn: 0.2951, fp: 3.5280, label 0: tensor(63), label 1: tensor(229) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:10.814] dice before refine 0.041124165058135986 and after 0.27250775694847107, label 0: tensor(63, device='cuda:0'), label 1: tensor(229, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(172) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:11.203] dice before refine 0.011595971882343292 and after 0.15169847011566162, label 0: tensor(0, device='cuda:0'), label 1: tensor(172, device='cuda:0') +num_clicks 10 points_length: 1823 dynamic_size: 10 +filter out voxels: 578 +First batch: fn: 0.8839, fp: 0.4145, label 0: tensor(8), label 1: tensor(163) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1641 dynamic_size: 10 +filter out voxels: 594 +First batch: fn: 0.7372, fp: 0.4316, label 0: tensor(18), label 1: tensor(252) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1391 dynamic_size: 10 +filter out voxels: 585 +First batch: fn: 0.5548, fp: 0.4359, label 0: tensor(21), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1292 dynamic_size: 10 +filter out voxels: 548 +First batch: fn: 0.5043, fp: 0.4160, label 0: tensor(30), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1190 dynamic_size: 10 +filter out voxels: 538 +First batch: fn: 0.4252, fp: 0.4224, label 0: tensor(31), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1149 dynamic_size: 10 +filter out voxels: 521 +First batch: fn: 0.4017, fp: 0.4167, label 0: tensor(26), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1125 dynamic_size: 10 +filter out voxels: 505 +First batch: fn: 0.3932, fp: 0.4081, label 0: tensor(28), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1101 dynamic_size: 10 +filter out voxels: 491 +First batch: fn: 0.3875, fp: 0.3967, label 0: tensor(38), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1073 dynamic_size: 10 +filter out voxels: 497 +First batch: fn: 0.3611, fp: 0.4031, label 0: tensor(34), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1063 dynamic_size: 10 +filter out voxels: 474 +First batch: fn: 0.3711, fp: 0.3860, label 0: tensor(32), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:15.287] dice before refine 0.011560693383216858 and after 0.6383712887763977, label 0: tensor(32, device='cuda:0'), label 1: tensor(132, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4409 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:15.702] dice before refine 0.06213347613811493 and after 0.1426905393600464, label 0: tensor(0, device='cuda:0'), label 1: tensor(503, device='cuda:0') +num_clicks 10 points_length: 16907 dynamic_size: 10 +filter out voxels: 13429 +First batch: fn: 0.6809, fp: 3.1538, label 0: tensor(90), label 1: tensor(476) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16666 dynamic_size: 10 +filter out voxels: 13887 +First batch: fn: 0.5616, fp: 3.2184, label 0: tensor(80), label 1: tensor(477) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16194 dynamic_size: 10 +filter out voxels: 13870 +First batch: fn: 0.4749, fp: 3.1980, label 0: tensor(85), label 1: tensor(437) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15719 dynamic_size: 10 +filter out voxels: 13656 +First batch: fn: 0.4200, fp: 3.1452, label 0: tensor(92), label 1: tensor(241) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15178 dynamic_size: 10 +filter out voxels: 13176 +First batch: fn: 0.4126, fp: 3.0299, label 0: tensor(72), label 1: tensor(275) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15317 dynamic_size: 10 +filter out voxels: 13451 +First batch: fn: 0.3817, fp: 3.0923, label 0: tensor(83), label 1: tensor(286) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15151 dynamic_size: 10 +filter out voxels: 13349 +First batch: fn: 0.3692, fp: 3.0671, label 0: tensor(91), label 1: tensor(325) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15020 dynamic_size: 10 +filter out voxels: 13332 +First batch: fn: 0.3436, fp: 3.0631, label 0: tensor(103), label 1: tensor(345) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16300 dynamic_size: 10 +filter out voxels: 14654 +First batch: fn: 0.3341, fp: 3.3629, label 0: tensor(77), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14699 dynamic_size: 10 +filter out voxels: 13086 +First batch: fn: 0.3271, fp: 3.0068, label 0: tensor(88), label 1: tensor(254) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:21.989] dice before refine 0.060316428542137146 and after 0.2924569249153137, label 0: tensor(88, device='cuda:0'), label 1: tensor(254, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(367) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:22.378] dice before refine 0.0025343953166157007 and after 0.02253587916493416, label 0: tensor(0, device='cuda:0'), label 1: tensor(367, device='cuda:0') +num_clicks 10 points_length: 32964 dynamic_size: 10 +filter out voxels: 29848 +First batch: fn: 0.8529, fp: 11.9040, label 0: tensor(151), label 1: tensor(386) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28268 dynamic_size: 10 +filter out voxels: 26252 +First batch: fn: 0.6966, fp: 10.2430, label 0: tensor(51), label 1: tensor(259) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38827 dynamic_size: 10 +filter out voxels: 36976 +First batch: fn: 0.6010, fp: 14.4249, label 0: tensor(60), label 1: tensor(296) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38372 dynamic_size: 10 +filter out voxels: 36773 +First batch: fn: 0.5313, fp: 14.3185, label 0: tensor(67), label 1: tensor(271) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37832 dynamic_size: 10 +filter out voxels: 36423 +First batch: fn: 0.4787, fp: 14.1622, label 0: tensor(58), label 1: tensor(242) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34609 dynamic_size: 10 +filter out voxels: 33294 +First batch: fn: 0.4536, fp: 12.9400, label 0: tensor(56), label 1: tensor(176) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36920 dynamic_size: 10 +filter out voxels: 35687 +First batch: fn: 0.4245, fp: 13.8634, label 0: tensor(61), label 1: tensor(298) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37614 dynamic_size: 10 +filter out voxels: 36447 +First batch: fn: 0.3943, fp: 14.1622, label 0: tensor(41), label 1: tensor(290) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37502 dynamic_size: 10 +filter out voxels: 36390 +First batch: fn: 0.3700, fp: 14.1432, label 0: tensor(62), label 1: tensor(243) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36705 dynamic_size: 10 +filter out voxels: 35624 +First batch: fn: 0.3572, fp: 13.8475, label 0: tensor(63), label 1: tensor(184) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:27.922] dice before refine 0.0021678106859326363 and after 0.08523908257484436, label 0: tensor(63, device='cuda:0'), label 1: tensor(184, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8531 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:28.352] dice before refine 0.25951817631721497 and after 0.45987674593925476, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 8151 dynamic_size: 10 +filter out voxels: 2991 +First batch: fn: 0.5932, fp: 0.3622, label 0: tensor(23), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8384 dynamic_size: 10 +filter out voxels: 3914 +First batch: fn: 0.5093, fp: 0.4734, label 0: tensor(47), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7294 dynamic_size: 10 +filter out voxels: 3404 +First batch: fn: 0.4404, fp: 0.4146, label 0: tensor(55), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6845 dynamic_size: 10 +filter out voxels: 3424 +First batch: fn: 0.3807, fp: 0.4216, label 0: tensor(80), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6107 dynamic_size: 10 +filter out voxels: 3026 +First batch: fn: 0.3370, fp: 0.3789, label 0: tensor(66), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5710 dynamic_size: 10 +filter out voxels: 2961 +First batch: fn: 0.2941, fp: 0.3752, label 0: tensor(93), label 1: tensor(492) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5304 dynamic_size: 10 +filter out voxels: 2731 +First batch: fn: 0.2719, fp: 0.3498, label 0: tensor(104), label 1: tensor(407) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5080 dynamic_size: 10 +filter out voxels: 2599 +First batch: fn: 0.2581, fp: 0.3374, label 0: tensor(79), label 1: tensor(425) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5061 dynamic_size: 10 +filter out voxels: 2687 +First batch: fn: 0.2412, fp: 0.3520, label 0: tensor(70), label 1: tensor(359) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4929 dynamic_size: 10 +filter out voxels: 2618 +First batch: fn: 0.2331, fp: 0.3446, label 0: tensor(115), label 1: tensor(339) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:35.179] dice before refine 0.2636151909828186 and after 0.7392035722732544, label 0: tensor(115, device='cuda:0'), label 1: tensor(339, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(241) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:35.561] dice before refine 0.035682689398527145 and after 0.0994846522808075, label 0: tensor(0, device='cuda:0'), label 1: tensor(241, device='cuda:0') +num_clicks 10 points_length: 4019 dynamic_size: 10 +filter out voxels: 1657 +First batch: fn: 0.9141, fp: 0.6413, label 0: tensor(5), label 1: tensor(247) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4005 dynamic_size: 10 +filter out voxels: 2133 +First batch: fn: 0.7183, fp: 0.8317, label 0: tensor(13), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3628 dynamic_size: 10 +filter out voxels: 1881 +First batch: fn: 0.6672, fp: 0.7368, label 0: tensor(20), label 1: tensor(320) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3434 dynamic_size: 10 +filter out voxels: 1926 +First batch: fn: 0.5604, fp: 0.7686, label 0: tensor(18), label 1: tensor(322) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3127 dynamic_size: 10 +filter out voxels: 1796 +First batch: fn: 0.4837, fp: 0.7264, label 0: tensor(24), label 1: tensor(194) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2822 dynamic_size: 10 +filter out voxels: 1572 +First batch: fn: 0.4485, fp: 0.6436, label 0: tensor(31), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2534 dynamic_size: 10 +filter out voxels: 1340 +First batch: fn: 0.4234, fp: 0.5573, label 0: tensor(30), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2455 dynamic_size: 10 +filter out voxels: 1282 +First batch: fn: 0.4118, fp: 0.5383, label 0: tensor(26), label 1: tensor(259) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2665 dynamic_size: 10 +filter out voxels: 1574 +First batch: fn: 0.3719, fp: 0.6594, label 0: tensor(29), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2462 dynamic_size: 10 +filter out voxels: 1410 +First batch: fn: 0.3572, fp: 0.5956, label 0: tensor(39), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:40.080] dice before refine 0.03980099409818649 and after 0.6023444533348083, label 0: tensor(39, device='cuda:0'), label 1: tensor(155, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:40.504] dice before refine 0.2674132287502289 and after 0.28182780742645264, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 17634 dynamic_size: 10 +filter out voxels: 12216 +First batch: fn: 0.5952, fp: 1.4677, label 0: tensor(89), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18602 dynamic_size: 10 +filter out voxels: 13840 +First batch: fn: 0.5245, fp: 1.6517, label 0: tensor(70), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16530 dynamic_size: 10 +filter out voxels: 12469 +First batch: fn: 0.4440, fp: 1.4898, label 0: tensor(85), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15754 dynamic_size: 10 +filter out voxels: 12141 +First batch: fn: 0.3925, fp: 1.4505, label 0: tensor(79), label 1: tensor(550) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15313 dynamic_size: 10 +filter out voxels: 12049 +First batch: fn: 0.3493, fp: 1.4421, label 0: tensor(76), label 1: tensor(433) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16354 dynamic_size: 10 +filter out voxels: 13147 +First batch: fn: 0.3360, fp: 1.5772, label 0: tensor(97), label 1: tensor(464) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14327 dynamic_size: 10 +filter out voxels: 11426 +First batch: fn: 0.3022, fp: 1.3739, label 0: tensor(117), label 1: tensor(438) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13854 dynamic_size: 10 +filter out voxels: 11132 +First batch: fn: 0.2794, fp: 1.3414, label 0: tensor(130), label 1: tensor(427) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13154 dynamic_size: 10 +filter out voxels: 10569 +First batch: fn: 0.2631, fp: 1.2757, label 0: tensor(79), label 1: tensor(378) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13649 dynamic_size: 10 +filter out voxels: 11173 +First batch: fn: 0.2447, fp: 1.3520, label 0: tensor(105), label 1: tensor(320) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:47.423] dice before refine 0.2776637077331543 and after 0.5020270943641663, label 0: tensor(105, device='cuda:0'), label 1: tensor(320, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +0.2821330468763005 +[21:56:48.124] epoch: 1/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.2821330468763005 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:48.633] dice before refine 0.0 and after 5.2893261454300955e-05, label 0: tensor(0, device='cuda:0'), label 1: tensor(103, device='cuda:0') +num_clicks 10 points_length: 75620 dynamic_size: 10 +filter out voxels: 74123 +First batch: fn: 0.9984, fp: 60.0347, label 0: tensor(47), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 80207 dynamic_size: 10 +filter out voxels: 78732 +First batch: fn: 0.9580, fp: 63.7772, label 0: tensor(51), label 1: tensor(239) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 77542 dynamic_size: 10 +filter out voxels: 76260 +First batch: fn: 0.8337, fp: 61.7506, label 0: tensor(57), label 1: tensor(213) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 77329 dynamic_size: 10 +filter out voxels: 76196 +First batch: fn: 0.7191, fp: 61.6933, label 0: tensor(47), label 1: tensor(169) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 77228 dynamic_size: 10 +filter out voxels: 76165 +First batch: fn: 0.6731, fp: 61.6578, label 0: tensor(60), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76201 dynamic_size: 10 +filter out voxels: 75184 +First batch: fn: 0.6634, fp: 60.8386, label 0: tensor(54), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76598 dynamic_size: 10 +filter out voxels: 75622 +First batch: fn: 0.6287, fp: 61.1937, label 0: tensor(53), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76655 dynamic_size: 10 +filter out voxels: 75710 +First batch: fn: 0.6013, fp: 61.2672, label 0: tensor(51), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76439 dynamic_size: 10 +filter out voxels: 75518 +First batch: fn: 0.5868, fp: 61.1073, label 0: tensor(56), label 1: tensor(169) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76686 dynamic_size: 10 +filter out voxels: 75816 +First batch: fn: 0.5383, fp: 61.3551, label 0: tensor(59), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:52.973] dice before refine 0.0 and after 0.014423954300582409, label 0: tensor(59, device='cuda:0'), label 1: tensor(84, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 5457 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:56:53.388] dice before refine 0.13637873530387878 and after 0.21381323039531708, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 8082 dynamic_size: 10 +filter out voxels: 2264 +First batch: fn: 0.7986, fp: 0.6824, label 0: tensor(174), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7483 dynamic_size: 10 +filter out voxels: 2249 +First batch: fn: 0.6947, fp: 0.6766, label 0: tensor(162), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7017 dynamic_size: 10 +filter out voxels: 2216 +First batch: fn: 0.6247, fp: 0.6612, label 0: tensor(213), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6520 dynamic_size: 10 +filter out voxels: 2160 +First batch: fn: 0.5686, fp: 0.6262, label 0: tensor(149), label 1: tensor(490) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6166 dynamic_size: 10 +filter out voxels: 2184 +First batch: fn: 0.4992, fp: 0.6307, label 0: tensor(170), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5924 dynamic_size: 10 +filter out voxels: 2154 +First batch: fn: 0.4666, fp: 0.6190, label 0: tensor(172), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5679 dynamic_size: 10 +filter out voxels: 2147 +First batch: fn: 0.4338, fp: 0.6069, label 0: tensor(252), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5448 dynamic_size: 10 +filter out voxels: 2103 +First batch: fn: 0.4147, fp: 0.5837, label 0: tensor(151), label 1: tensor(432) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5329 dynamic_size: 10 +filter out voxels: 2121 +First batch: fn: 0.3863, fp: 0.5903, label 0: tensor(192), label 1: tensor(369) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5187 dynamic_size: 10 +filter out voxels: 2082 +First batch: fn: 0.3762, fp: 0.5743, label 0: tensor(143), label 1: tensor(430) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:01.163] dice before refine 0.14006111025810242 and after 0.5794454216957092, label 0: tensor(143, device='cuda:0'), label 1: tensor(430, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:01.610] dice before refine 0.0 and after 0.002095150528475642, label 0: tensor(0, device='cuda:0'), label 1: tensor(94, device='cuda:0') +num_clicks 10 points_length: 39056 dynamic_size: 10 +filter out voxels: 37726 +First batch: fn: 0.9669, fp: 30.5553, label 0: tensor(53), label 1: tensor(160) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41758 dynamic_size: 10 +filter out voxels: 40534 +First batch: fn: 0.8612, fp: 32.8418, label 0: tensor(60), label 1: tensor(177) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41569 dynamic_size: 10 +filter out voxels: 40430 +First batch: fn: 0.7974, fp: 32.7530, label 0: tensor(66), label 1: tensor(187) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41474 dynamic_size: 10 +filter out voxels: 40404 +First batch: fn: 0.7708, fp: 32.7030, label 0: tensor(32), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41194 dynamic_size: 10 +filter out voxels: 40151 +First batch: fn: 0.7490, fp: 32.4988, label 0: tensor(48), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40499 dynamic_size: 10 +filter out voxels: 39487 +First batch: fn: 0.7272, fp: 31.9596, label 0: tensor(40), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41298 dynamic_size: 10 +filter out voxels: 40314 +First batch: fn: 0.6990, fp: 32.6328, label 0: tensor(39), label 1: tensor(164) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41355 dynamic_size: 10 +filter out voxels: 40428 +First batch: fn: 0.6376, fp: 32.7401, label 0: tensor(64), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40569 dynamic_size: 10 +filter out voxels: 39671 +First batch: fn: 0.6239, fp: 32.1194, label 0: tensor(37), label 1: tensor(194) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41279 dynamic_size: 10 +filter out voxels: 40443 +First batch: fn: 0.5634, fp: 32.7530, label 0: tensor(56), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:05.707] dice before refine 0.0 and after 0.02576112374663353, label 0: tensor(56, device='cuda:0'), label 1: tensor(98, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 31898 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:06.204] dice before refine 0.5483456254005432 and after 0.5501400828361511, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 28105 dynamic_size: 10 +filter out voxels: 7806 +First batch: fn: 0.4613, fp: 0.4198, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24119 dynamic_size: 10 +filter out voxels: 6404 +First batch: fn: 0.4207, fp: 0.3354, label 0: tensor(483), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23001 dynamic_size: 10 +filter out voxels: 6658 +First batch: fn: 0.3855, fp: 0.3355, label 0: tensor(434), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21431 dynamic_size: 10 +filter out voxels: 6331 +First batch: fn: 0.3595, fp: 0.3124, label 0: tensor(535), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20363 dynamic_size: 10 +filter out voxels: 6393 +First batch: fn: 0.3304, fp: 0.3080, label 0: tensor(433), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19338 dynamic_size: 10 +filter out voxels: 6394 +First batch: fn: 0.3019, fp: 0.3043, label 0: tensor(425), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18550 dynamic_size: 10 +filter out voxels: 6127 +First batch: fn: 0.2913, fp: 0.2903, label 0: tensor(390), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17820 dynamic_size: 10 +filter out voxels: 6139 +First batch: fn: 0.2688, fp: 0.2899, label 0: tensor(435), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17055 dynamic_size: 10 +filter out voxels: 5990 +First batch: fn: 0.2523, fp: 0.2824, label 0: tensor(360), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16952 dynamic_size: 10 +filter out voxels: 6246 +First batch: fn: 0.2364, fp: 0.2950, label 0: tensor(514), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:16.506] dice before refine 0.5774121880531311 and after 0.7540242671966553, label 0: tensor(514, device='cuda:0'), label 1: tensor(504, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +0.2878344424746253 +[21:57:17.473] epoch: 1/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.2878344424746253 stich left and right side (total size): 1 +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:17.895] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(44, device='cuda:0') +num_clicks 10 points_length: 41942 dynamic_size: 10 +filter out voxels: 40583 +First batch: fn: 1.0000, fp: 83.9028, label 0: tensor(88), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40710 dynamic_size: 10 +filter out voxels: 39574 +First batch: fn: 1.0000, fp: 81.4089, label 0: tensor(105), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40949 dynamic_size: 10 +filter out voxels: 39872 +First batch: fn: 1.0000, fp: 81.8927, label 0: tensor(113), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40602 dynamic_size: 10 +filter out voxels: 39586 +First batch: fn: 1.0000, fp: 81.1903, label 0: tensor(73), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40764 dynamic_size: 10 +filter out voxels: 39752 +First batch: fn: 1.0000, fp: 81.5182, label 0: tensor(112), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40159 dynamic_size: 10 +filter out voxels: 39179 +First batch: fn: 1.0000, fp: 80.2935, label 0: tensor(72), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41465 dynamic_size: 10 +filter out voxels: 40450 +First batch: fn: 1.0000, fp: 82.9372, label 0: tensor(89), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41190 dynamic_size: 10 +filter out voxels: 40193 +First batch: fn: 1.0000, fp: 82.3806, label 0: tensor(80), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41210 dynamic_size: 10 +filter out voxels: 40219 +First batch: fn: 1.0000, fp: 82.4211, label 0: tensor(63), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41693 dynamic_size: 10 +filter out voxels: 40682 +First batch: fn: 1.0000, fp: 83.3988, label 0: tensor(106), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:21.673] dice before refine 0.0 and after 0.0, label 0: tensor(106, device='cuda:0'), label 1: tensor(32, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:22.033] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(45, device='cuda:0') +num_clicks 10 points_length: 52898 dynamic_size: 10 +filter out voxels: 52307 +First batch: fn: 1.0000, fp: 106.0810, label 0: tensor(32), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53534 dynamic_size: 10 +filter out voxels: 52959 +First batch: fn: 1.0000, fp: 107.3684, label 0: tensor(21), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53915 dynamic_size: 10 +filter out voxels: 53342 +First batch: fn: 1.0000, fp: 108.1397, label 0: tensor(25), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53866 dynamic_size: 10 +filter out voxels: 53296 +First batch: fn: 1.0000, fp: 108.0405, label 0: tensor(25), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53640 dynamic_size: 10 +filter out voxels: 53073 +First batch: fn: 1.0000, fp: 107.5830, label 0: tensor(25), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53337 dynamic_size: 10 +filter out voxels: 52771 +First batch: fn: 1.0000, fp: 106.9696, label 0: tensor(29), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53163 dynamic_size: 10 +filter out voxels: 52598 +First batch: fn: 1.0000, fp: 106.6174, label 0: tensor(28), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53315 dynamic_size: 10 +filter out voxels: 52750 +First batch: fn: 1.0000, fp: 106.9251, label 0: tensor(24), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53502 dynamic_size: 10 +filter out voxels: 52938 +First batch: fn: 1.0000, fp: 107.3036, label 0: tensor(27), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53545 dynamic_size: 10 +filter out voxels: 52981 +First batch: fn: 1.0000, fp: 107.3907, label 0: tensor(25), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:25.300] dice before refine 0.0 and after 0.0, label 0: tensor(25, device='cuda:0'), label 1: tensor(33, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:25.672] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(135, device='cuda:0') +num_clicks 10 points_length: 17146 dynamic_size: 10 +filter out voxels: 677 +First batch: fn: 1.0000, fp: 17.6370, label 0: tensor(510), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15694 dynamic_size: 10 +filter out voxels: 339 +First batch: fn: 1.0000, fp: 16.0587, label 0: tensor(510), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15242 dynamic_size: 10 +filter out voxels: 350 +First batch: fn: 1.0000, fp: 15.5674, label 0: tensor(510), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15288 dynamic_size: 10 +filter out voxels: 377 +First batch: fn: 0.9967, fp: 15.6207, label 0: tensor(509), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15244 dynamic_size: 10 +filter out voxels: 369 +First batch: fn: 0.9359, fp: 15.6337, label 0: tensor(508), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14562 dynamic_size: 10 +filter out voxels: 373 +First batch: fn: 0.8826, fp: 14.9457, label 0: tensor(509), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14338 dynamic_size: 10 +filter out voxels: 383 +First batch: fn: 0.8065, fp: 14.7783, label 0: tensor(509), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14013 dynamic_size: 10 +filter out voxels: 384 +First batch: fn: 0.6978, fp: 14.5337, label 0: tensor(510), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14591 dynamic_size: 10 +filter out voxels: 396 +First batch: fn: 0.6033, fp: 15.2565, label 0: tensor(510), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13292 dynamic_size: 10 +filter out voxels: 354 +First batch: fn: 0.5870, fp: 13.8609, label 0: tensor(509), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:32.994] dice before refine 0.0 and after 0.06005706265568733, label 0: tensor(509, device='cuda:0'), label 1: tensor(104, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:33.365] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(96, device='cuda:0') +num_clicks 10 points_length: 21726 dynamic_size: 10 +filter out voxels: 20420 +First batch: fn: 1.0000, fp: 22.6152, label 0: tensor(53), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22752 dynamic_size: 10 +filter out voxels: 21545 +First batch: fn: 1.0000, fp: 23.7304, label 0: tensor(34), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23171 dynamic_size: 10 +filter out voxels: 21959 +First batch: fn: 1.0000, fp: 24.1859, label 0: tensor(39), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23011 dynamic_size: 10 +filter out voxels: 21821 +First batch: fn: 1.0000, fp: 24.0120, label 0: tensor(46), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22889 dynamic_size: 10 +filter out voxels: 21716 +First batch: fn: 1.0000, fp: 23.8793, label 0: tensor(45), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22735 dynamic_size: 10 +filter out voxels: 21571 +First batch: fn: 1.0000, fp: 23.7120, label 0: tensor(37), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22232 dynamic_size: 10 +filter out voxels: 21044 +First batch: fn: 0.9989, fp: 23.1663, label 0: tensor(34), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22357 dynamic_size: 10 +filter out voxels: 21174 +First batch: fn: 0.9935, fp: 23.3076, label 0: tensor(34), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22153 dynamic_size: 10 +filter out voxels: 20997 +First batch: fn: 0.9739, fp: 23.1054, label 0: tensor(37), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22060 dynamic_size: 10 +filter out voxels: 20938 +First batch: fn: 0.9424, fp: 23.0359, label 0: tensor(38), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:37.439] dice before refine 0.0 and after 0.00808135885745287, label 0: tensor(38, device='cuda:0'), label 1: tensor(132, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 838 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:37.811] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(122, device='cuda:0') +num_clicks 10 points_length: 25608 dynamic_size: 10 +filter out voxels: 24711 +First batch: fn: 1.0000, fp: 29.5585, label 0: tensor(18), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28438 dynamic_size: 10 +filter out voxels: 27549 +First batch: fn: 1.0000, fp: 32.9356, label 0: tensor(20), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28565 dynamic_size: 10 +filter out voxels: 27685 +First batch: fn: 1.0000, fp: 33.0871, label 0: tensor(19), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28792 dynamic_size: 10 +filter out voxels: 27911 +First batch: fn: 1.0000, fp: 33.3580, label 0: tensor(21), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28471 dynamic_size: 10 +filter out voxels: 27599 +First batch: fn: 0.9928, fp: 32.9821, label 0: tensor(19), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28707 dynamic_size: 10 +filter out voxels: 27863 +First batch: fn: 0.9594, fp: 33.2971, label 0: tensor(19), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28510 dynamic_size: 10 +filter out voxels: 27706 +First batch: fn: 0.9045, fp: 33.1169, label 0: tensor(20), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28427 dynamic_size: 10 +filter out voxels: 27652 +First batch: fn: 0.8616, fp: 33.0609, label 0: tensor(27), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27812 dynamic_size: 10 +filter out voxels: 27051 +First batch: fn: 0.8508, fp: 32.3377, label 0: tensor(20), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28025 dynamic_size: 10 +filter out voxels: 27290 +First batch: fn: 0.8150, fp: 32.6277, label 0: tensor(25), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:41.685] dice before refine 0.0 and after 0.01133907400071621, label 0: tensor(25, device='cuda:0'), label 1: tensor(118, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 901 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:42.061] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(135, device='cuda:0') +num_clicks 10 points_length: 11804 dynamic_size: 10 +filter out voxels: 10702 +First batch: fn: 1.0000, fp: 12.1010, label 0: tensor(44), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12492 dynamic_size: 10 +filter out voxels: 11458 +First batch: fn: 1.0000, fp: 12.8646, label 0: tensor(40), label 1: tensor(141) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12591 dynamic_size: 10 +filter out voxels: 11578 +First batch: fn: 1.0000, fp: 12.9745, label 0: tensor(33), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12447 dynamic_size: 10 +filter out voxels: 11454 +First batch: fn: 1.0000, fp: 12.8147, label 0: tensor(30), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12702 dynamic_size: 10 +filter out voxels: 11709 +First batch: fn: 1.0000, fp: 13.0977, label 0: tensor(33), label 1: tensor(193) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12671 dynamic_size: 10 +filter out voxels: 11697 +First batch: fn: 0.9900, fp: 13.0733, label 0: tensor(26), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12581 dynamic_size: 10 +filter out voxels: 11640 +First batch: fn: 0.9478, fp: 13.0155, label 0: tensor(31), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12369 dynamic_size: 10 +filter out voxels: 11443 +First batch: fn: 0.9334, fp: 12.7947, label 0: tensor(29), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12244 dynamic_size: 10 +filter out voxels: 11334 +First batch: fn: 0.9090, fp: 12.6804, label 0: tensor(33), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12142 dynamic_size: 10 +filter out voxels: 11247 +First batch: fn: 0.8990, fp: 12.5771, label 0: tensor(30), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:46.259] dice before refine 0.0 and after 0.017273690551519394, label 0: tensor(30, device='cuda:0'), label 1: tensor(123, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1964 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:46.633] dice before refine 0.0004007012175861746 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(129, device='cuda:0') +num_clicks 10 points_length: 14780 dynamic_size: 10 +filter out voxels: 5692 +First batch: fn: 1.0000, fp: 6.5255, label 0: tensor(516), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13706 dynamic_size: 10 +filter out voxels: 4974 +First batch: fn: 1.0000, fp: 5.9786, label 0: tensor(507), label 1: tensor(160) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13317 dynamic_size: 10 +filter out voxels: 4864 +First batch: fn: 0.9995, fp: 5.7811, label 0: tensor(520), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13043 dynamic_size: 10 +filter out voxels: 4838 +First batch: fn: 0.9664, fp: 5.6746, label 0: tensor(509), label 1: tensor(322) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12863 dynamic_size: 10 +filter out voxels: 5015 +First batch: fn: 0.7352, fp: 5.8142, label 0: tensor(507), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12449 dynamic_size: 10 +filter out voxels: 4917 +First batch: fn: 0.6339, fp: 5.7047, label 0: tensor(462), label 1: tensor(258) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12702 dynamic_size: 10 +filter out voxels: 5192 +First batch: fn: 0.4399, fp: 6.0275, label 0: tensor(524), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11994 dynamic_size: 10 +filter out voxels: 4908 +First batch: fn: 0.3753, fp: 5.7317, label 0: tensor(509), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11840 dynamic_size: 10 +filter out voxels: 4896 +First batch: fn: 0.3167, fp: 5.7118, label 0: tensor(510), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11645 dynamic_size: 10 +filter out voxels: 4850 +First batch: fn: 0.2826, fp: 5.6466, label 0: tensor(510), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:54.069] dice before refine 0.0003573342983145267 and after 0.20065905153751373, label 0: tensor(510, device='cuda:0'), label 1: tensor(81, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2027 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:57:54.450] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(121, device='cuda:0') +num_clicks 10 points_length: 13612 dynamic_size: 10 +filter out voxels: 6188 +First batch: fn: 1.0000, fp: 5.7153, label 0: tensor(507), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11728 dynamic_size: 10 +filter out voxels: 5597 +First batch: fn: 1.0000, fp: 4.7859, label 0: tensor(525), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9306 dynamic_size: 10 +filter out voxels: 4791 +First batch: fn: 1.0000, fp: 3.5910, label 0: tensor(224), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10520 dynamic_size: 10 +filter out voxels: 5719 +First batch: fn: 1.0000, fp: 4.1899, label 0: tensor(452), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8912 dynamic_size: 10 +filter out voxels: 5148 +First batch: fn: 1.0000, fp: 3.3966, label 0: tensor(280), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9223 dynamic_size: 10 +filter out voxels: 5562 +First batch: fn: 0.9906, fp: 3.5594, label 0: tensor(235), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8831 dynamic_size: 10 +filter out voxels: 5408 +First batch: fn: 0.9452, fp: 3.4114, label 0: tensor(227), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8557 dynamic_size: 10 +filter out voxels: 5414 +First batch: fn: 0.8683, fp: 3.3532, label 0: tensor(250), label 1: tensor(306) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8110 dynamic_size: 10 +filter out voxels: 5310 +First batch: fn: 0.6887, fp: 3.3123, label 0: tensor(317), label 1: tensor(197) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7597 dynamic_size: 10 +filter out voxels: 4999 +First batch: fn: 0.6537, fp: 3.0942, label 0: tensor(140), label 1: tensor(207) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:01.142] dice before refine 0.0 and after 0.1853710561990738, label 0: tensor(140, device='cuda:0'), label 1: tensor(207, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.016184079206802628 +[21:58:01.895] epoch: 1/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.016184079206802628 stich left and right side (total size): 1 +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:02.388] dice before refine 0.13980938494205475 and after 0.17563876509666443, label 0: tensor(0, device='cuda:0'), label 1: tensor(529, device='cuda:0') +num_clicks 10 points_length: 40749 dynamic_size: 10 +filter out voxels: 27314 +First batch: fn: 0.4052, fp: 5.1784, label 0: tensor(508), label 1: tensor(435) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37663 dynamic_size: 10 +filter out voxels: 25785 +First batch: fn: 0.3239, fp: 4.8368, label 0: tensor(508), label 1: tensor(389) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38056 dynamic_size: 10 +filter out voxels: 26375 +First batch: fn: 0.2646, fp: 4.9500, label 0: tensor(510), label 1: tensor(268) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36952 dynamic_size: 10 +filter out voxels: 26121 +First batch: fn: 0.2297, fp: 4.8337, label 0: tensor(508), label 1: tensor(225) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35875 dynamic_size: 10 +filter out voxels: 25689 +First batch: fn: 0.2225, fp: 4.6932, label 0: tensor(510), label 1: tensor(243) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35455 dynamic_size: 10 +filter out voxels: 25696 +First batch: fn: 0.2055, fp: 4.6526, label 0: tensor(509), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34809 dynamic_size: 10 +filter out voxels: 25568 +First batch: fn: 0.1868, fp: 4.5829, label 0: tensor(510), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34101 dynamic_size: 10 +filter out voxels: 25231 +First batch: fn: 0.1846, fp: 4.4881, label 0: tensor(509), label 1: tensor(166) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33664 dynamic_size: 10 +filter out voxels: 25115 +First batch: fn: 0.1784, fp: 4.4344, label 0: tensor(510), label 1: tensor(201) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33616 dynamic_size: 10 +filter out voxels: 25393 +First batch: fn: 0.1691, fp: 4.4371, label 0: tensor(557), label 1: tensor(246) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:11.097] dice before refine 0.1509052962064743 and after 0.26588866114616394, label 0: tensor(557, device='cuda:0'), label 1: tensor(246, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:11.532] dice before refine 0.17059260606765747 and after 0.18398119509220123, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 40264 dynamic_size: 10 +filter out voxels: 19825 +First batch: fn: 0.3780, fp: 5.1391, label 0: tensor(509), label 1: tensor(474) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38780 dynamic_size: 10 +filter out voxels: 18937 +First batch: fn: 0.2730, fp: 5.0408, label 0: tensor(510), label 1: tensor(326) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37486 dynamic_size: 10 +filter out voxels: 18143 +First batch: fn: 0.2460, fp: 4.8905, label 0: tensor(510), label 1: tensor(275) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36869 dynamic_size: 10 +filter out voxels: 18334 +First batch: fn: 0.1983, fp: 4.8537, label 0: tensor(509), label 1: tensor(156) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34169 dynamic_size: 10 +filter out voxels: 16634 +First batch: fn: 0.2065, fp: 4.4755, label 0: tensor(510), label 1: tensor(267) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35276 dynamic_size: 10 +filter out voxels: 17746 +First batch: fn: 0.1820, fp: 4.6517, label 0: tensor(510), label 1: tensor(216) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35336 dynamic_size: 10 +filter out voxels: 18402 +First batch: fn: 0.1603, fp: 4.6816, label 0: tensor(510), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34564 dynamic_size: 10 +filter out voxels: 18142 +First batch: fn: 0.1558, fp: 4.5803, label 0: tensor(509), label 1: tensor(176) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33576 dynamic_size: 10 +filter out voxels: 17527 +First batch: fn: 0.1579, fp: 4.4429, label 0: tensor(509), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33693 dynamic_size: 10 +filter out voxels: 18085 +First batch: fn: 0.1436, fp: 4.4731, label 0: tensor(510), label 1: tensor(187) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:20.431] dice before refine 0.18075956404209137 and after 0.275420218706131, label 0: tensor(510, device='cuda:0'), label 1: tensor(187, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(480) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:20.855] dice before refine 0.08281469345092773 and after 0.19250275194644928, label 0: tensor(0, device='cuda:0'), label 1: tensor(480, device='cuda:0') +num_clicks 10 points_length: 15445 dynamic_size: 10 +filter out voxels: 5859 +First batch: fn: 0.7403, fp: 1.4381, label 0: tensor(447), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13902 dynamic_size: 10 +filter out voxels: 5565 +First batch: fn: 0.6659, fp: 1.2949, label 0: tensor(402), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12940 dynamic_size: 10 +filter out voxels: 5561 +First batch: fn: 0.5788, fp: 1.2463, label 0: tensor(412), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12053 dynamic_size: 10 +filter out voxels: 5513 +First batch: fn: 0.4982, fp: 1.2018, label 0: tensor(320), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11489 dynamic_size: 10 +filter out voxels: 5562 +First batch: fn: 0.4039, fp: 1.2165, label 0: tensor(314), label 1: tensor(442) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11059 dynamic_size: 10 +filter out voxels: 5493 +First batch: fn: 0.3745, fp: 1.1853, label 0: tensor(339), label 1: tensor(361) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10632 dynamic_size: 10 +filter out voxels: 5431 +First batch: fn: 0.3491, fp: 1.1505, label 0: tensor(386), label 1: tensor(275) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10838 dynamic_size: 10 +filter out voxels: 5697 +First batch: fn: 0.3429, fp: 1.1858, label 0: tensor(390), label 1: tensor(345) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10813 dynamic_size: 10 +filter out voxels: 5781 +First batch: fn: 0.3274, fp: 1.1977, label 0: tensor(361), label 1: tensor(304) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10138 dynamic_size: 10 +filter out voxels: 5381 +First batch: fn: 0.3162, fp: 1.1137, label 0: tensor(328), label 1: tensor(317) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:29.703] dice before refine 0.08583156019449234 and after 0.493971049785614, label 0: tensor(328, device='cuda:0'), label 1: tensor(317, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(385) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:30.124] dice before refine 0.05358508229255676 and after 0.10520032048225403, label 0: tensor(0, device='cuda:0'), label 1: tensor(385, device='cuda:0') +num_clicks 10 points_length: 26980 dynamic_size: 10 +filter out voxels: 9802 +First batch: fn: 0.7763, fp: 3.0291, label 0: tensor(507), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23877 dynamic_size: 10 +filter out voxels: 9162 +First batch: fn: 0.7324, fp: 2.6353, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22987 dynamic_size: 10 +filter out voxels: 9227 +First batch: fn: 0.6550, fp: 2.5872, label 0: tensor(510), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21962 dynamic_size: 10 +filter out voxels: 9170 +First batch: fn: 0.5764, fp: 2.5212, label 0: tensor(506), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21147 dynamic_size: 10 +filter out voxels: 9155 +First batch: fn: 0.5138, fp: 2.4688, label 0: tensor(508), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20649 dynamic_size: 10 +filter out voxels: 9185 +First batch: fn: 0.4640, fp: 2.4484, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21687 dynamic_size: 10 +filter out voxels: 9883 +First batch: fn: 0.4293, fp: 2.6295, label 0: tensor(508), label 1: tensor(469) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19517 dynamic_size: 10 +filter out voxels: 9071 +First batch: fn: 0.4102, fp: 2.3426, label 0: tensor(544), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18885 dynamic_size: 10 +filter out voxels: 8987 +First batch: fn: 0.3914, fp: 2.2722, label 0: tensor(506), label 1: tensor(417) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18398 dynamic_size: 10 +filter out voxels: 8892 +First batch: fn: 0.3798, fp: 2.2151, label 0: tensor(509), label 1: tensor(425) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:40.146] dice before refine 0.05447370931506157 and after 0.33316150307655334, label 0: tensor(509, device='cuda:0'), label 1: tensor(425, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 36954 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:40.685] dice before refine 0.4587603807449341 and after 0.46844449639320374, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 30776 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6330, fp: 0.1998, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29220 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6020, fp: 0.1887, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27458 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5605, fp: 0.1826, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26578 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5456, fp: 0.1736, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25623 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5249, fp: 0.1685, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25121 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5122, fp: 0.1676, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24664 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4984, fp: 0.1690, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23791 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4833, fp: 0.1605, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23221 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4625, fp: 0.1659, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22763 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4553, fp: 0.1607, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:52.322] dice before refine 0.45758816599845886 and after 0.6479492783546448, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 35104 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:58:52.860] dice before refine 0.45574504137039185 and after 0.45912596583366394, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 27835 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6635, fp: 0.1295, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26507 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6416, fp: 0.1135, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24509 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5887, fp: 0.1095, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22951 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5491, fp: 0.1047, label 0: tensor(530), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22339 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5347, fp: 0.1017, label 0: tensor(489), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21797 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5216, fp: 0.0994, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21475 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5122, fp: 0.0996, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21134 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5036, fp: 0.0984, label 0: tensor(535), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20716 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4943, fp: 0.0958, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20292 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4826, fp: 0.0955, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:04.026] dice before refine 0.45428794622421265 and after 0.6576166749000549, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26886 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:04.553] dice before refine 0.32414883375167847 and after 0.3593980669975281, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 26904 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7193, fp: 0.2814, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25583 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7043, fp: 0.2472, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24815 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6879, fp: 0.2351, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23418 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6714, fp: 0.1996, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22175 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6179, fp: 0.2069, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21042 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6014, fp: 0.1812, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20483 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5895, fp: 0.1724, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20232 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5612, fp: 0.1913, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19157 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5300, fp: 0.1825, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18726 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5121, fp: 0.1844, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:15.734] dice before refine 0.33066532015800476 and after 0.5967575311660767, label 0: tensor(504, device='cuda:0'), label 1: tensor(506, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:16.281] dice before refine 0.34057918190956116 and after 0.3618077337741852, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 24557 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7348, fp: 0.2006, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22940 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7025, fp: 0.1713, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21409 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6633, fp: 0.1523, label 0: tensor(455), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21036 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6450, fp: 0.1563, label 0: tensor(491), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20144 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6213, fp: 0.1460, label 0: tensor(470), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19382 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6043, fp: 0.1340, label 0: tensor(519), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18263 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5695, fp: 0.1262, label 0: tensor(511), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17821 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5469, fp: 0.1320, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17374 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5348, fp: 0.1270, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17029 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5210, fp: 0.1276, label 0: tensor(543), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:27.362] dice before refine 0.341221421957016 and after 0.6098010540008545, label 0: tensor(543, device='cuda:0'), label 1: tensor(506, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.3736454112963243 +[21:59:27.866] epoch: 1/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.3736454112963243 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:28.368] dice before refine 0.2791828215122223 and after 0.2549408972263336, label 0: tensor(0, device='cuda:0'), label 1: tensor(102, device='cuda:0') +num_clicks 10 points_length: 15758 dynamic_size: 10 +filter out voxels: 13406 +First batch: fn: 0.1403, fp: 4.8846, label 0: tensor(333), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13073 dynamic_size: 10 +filter out voxels: 11662 +First batch: fn: 0.1298, fp: 4.0389, label 0: tensor(210), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12741 dynamic_size: 10 +filter out voxels: 11488 +First batch: fn: 0.1177, fp: 3.9452, label 0: tensor(173), label 1: tensor(170) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15091 dynamic_size: 10 +filter out voxels: 13772 +First batch: fn: 0.0845, fp: 4.7277, label 0: tensor(198), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12904 dynamic_size: 10 +filter out voxels: 11845 +First batch: fn: 0.0778, fp: 4.0370, label 0: tensor(178), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13552 dynamic_size: 10 +filter out voxels: 12499 +First batch: fn: 0.0705, fp: 4.2510, label 0: tensor(171), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12718 dynamic_size: 10 +filter out voxels: 11758 +First batch: fn: 0.0717, fp: 3.9837, label 0: tensor(181), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12737 dynamic_size: 10 +filter out voxels: 11801 +First batch: fn: 0.0689, fp: 3.9927, label 0: tensor(185), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12752 dynamic_size: 10 +filter out voxels: 11827 +First batch: fn: 0.0641, fp: 4.0022, label 0: tensor(175), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13169 dynamic_size: 10 +filter out voxels: 12221 +First batch: fn: 0.0647, fp: 4.1346, label 0: tensor(272), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:33.393] dice before refine 0.3240678012371063 and after 0.3245672583580017, label 0: tensor(272, device='cuda:0'), label 1: tensor(70, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:33.769] dice before refine 0.5171263813972473 and after 0.5345258116722107, label 0: tensor(0, device='cuda:0'), label 1: tensor(149, device='cuda:0') +num_clicks 10 points_length: 4476 dynamic_size: 10 +filter out voxels: 3260 +First batch: fn: 0.1805, fp: 1.2468, label 0: tensor(137), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3470 dynamic_size: 10 +filter out voxels: 2425 +First batch: fn: 0.1531, fp: 0.9534, label 0: tensor(125), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4309 dynamic_size: 10 +filter out voxels: 3289 +First batch: fn: 0.1314, fp: 1.2427, label 0: tensor(135), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4340 dynamic_size: 10 +filter out voxels: 3380 +First batch: fn: 0.1142, fp: 1.2698, label 0: tensor(150), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4014 dynamic_size: 10 +filter out voxels: 3114 +First batch: fn: 0.1049, fp: 1.1751, label 0: tensor(154), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4017 dynamic_size: 10 +filter out voxels: 3151 +First batch: fn: 0.0963, fp: 1.1846, label 0: tensor(161), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3795 dynamic_size: 10 +filter out voxels: 2942 +First batch: fn: 0.0918, fp: 1.1183, label 0: tensor(166), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3724 dynamic_size: 10 +filter out voxels: 2895 +First batch: fn: 0.0826, fp: 1.1049, label 0: tensor(160), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2621 dynamic_size: 10 +filter out voxels: 1877 +First batch: fn: 0.0848, fp: 0.7510, label 0: tensor(144), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3883 dynamic_size: 10 +filter out voxels: 3086 +First batch: fn: 0.0698, fp: 1.1684, label 0: tensor(182), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:38.301] dice before refine 0.4808308184146881 and after 0.6292572021484375, label 0: tensor(182, device='cuda:0'), label 1: tensor(79, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:38.680] dice before refine 0.5753604173660278 and after 0.5632568001747131, label 0: tensor(0, device='cuda:0'), label 1: tensor(188, device='cuda:0') +num_clicks 10 points_length: 4184 dynamic_size: 10 +filter out voxels: 2523 +First batch: fn: 0.1397, fp: 1.1945, label 0: tensor(215), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3046 dynamic_size: 10 +filter out voxels: 1718 +First batch: fn: 0.1097, fp: 0.8616, label 0: tensor(129), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3269 dynamic_size: 10 +filter out voxels: 2000 +First batch: fn: 0.0810, fp: 0.9614, label 0: tensor(226), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2507 dynamic_size: 10 +filter out voxels: 1438 +First batch: fn: 0.0864, fp: 0.7130, label 0: tensor(176), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2962 dynamic_size: 10 +filter out voxels: 1906 +First batch: fn: 0.0737, fp: 0.8709, label 0: tensor(173), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2499 dynamic_size: 10 +filter out voxels: 1535 +First batch: fn: 0.0746, fp: 0.7223, label 0: tensor(165), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2432 dynamic_size: 10 +filter out voxels: 1494 +First batch: fn: 0.0717, fp: 0.7038, label 0: tensor(151), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2811 dynamic_size: 10 +filter out voxels: 1850 +First batch: fn: 0.0663, fp: 0.8300, label 0: tensor(152), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2777 dynamic_size: 10 +filter out voxels: 1833 +First batch: fn: 0.0622, fp: 0.8233, label 0: tensor(183), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2389 dynamic_size: 10 +filter out voxels: 1498 +First batch: fn: 0.0663, fp: 0.6955, label 0: tensor(142), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:43.481] dice before refine 0.593384325504303 and after 0.6970019936561584, label 0: tensor(142, device='cuda:0'), label 1: tensor(108, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(164) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:43.858] dice before refine 0.5646978616714478 and after 0.6109082102775574, label 0: tensor(0, device='cuda:0'), label 1: tensor(164, device='cuda:0') +num_clicks 10 points_length: 3196 dynamic_size: 10 +filter out voxels: 1942 +First batch: fn: 0.1999, fp: 0.8192, label 0: tensor(164), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2717 dynamic_size: 10 +filter out voxels: 1651 +First batch: fn: 0.1575, fp: 0.7089, label 0: tensor(86), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2833 dynamic_size: 10 +filter out voxels: 1831 +First batch: fn: 0.1205, fp: 0.7828, label 0: tensor(238), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2385 dynamic_size: 10 +filter out voxels: 1515 +First batch: fn: 0.1097, fp: 0.6508, label 0: tensor(173), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2345 dynamic_size: 10 +filter out voxels: 1516 +First batch: fn: 0.1027, fp: 0.6451, label 0: tensor(90), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2480 dynamic_size: 10 +filter out voxels: 1653 +First batch: fn: 0.0886, fp: 0.7022, label 0: tensor(149), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2317 dynamic_size: 10 +filter out voxels: 1530 +First batch: fn: 0.0874, fp: 0.6515, label 0: tensor(185), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2154 dynamic_size: 10 +filter out voxels: 1391 +First batch: fn: 0.0890, fp: 0.5979, label 0: tensor(141), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2112 dynamic_size: 10 +filter out voxels: 1360 +First batch: fn: 0.0848, fp: 0.5886, label 0: tensor(217), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2111 dynamic_size: 10 +filter out voxels: 1378 +First batch: fn: 0.0807, fp: 0.5925, label 0: tensor(173), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:48.572] dice before refine 0.5773726105690002 and after 0.737730085849762, label 0: tensor(173, device='cuda:0'), label 1: tensor(76, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.6285893808711659 +[21:59:49.004] epoch: 1/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.6285893808711659 stich left and right side (total size): 1 +num_clicks 10 points_length: 19676 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[21:59:49.534] dice before refine 0.03501142933964729 and after 0.03513247147202492, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 76404 dynamic_size: 10 +filter out voxels: 49959 +First batch: fn: 0.9293, fp: 2.9538, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74013 dynamic_size: 10 +filter out voxels: 48834 +First batch: fn: 0.9180, fp: 2.8436, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 73602 dynamic_size: 10 +filter out voxels: 49000 +First batch: fn: 0.9120, fp: 2.8287, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 73055 dynamic_size: 10 +filter out voxels: 48959 +First batch: fn: 0.9087, fp: 2.8042, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 72373 dynamic_size: 10 +filter out voxels: 48767 +First batch: fn: 0.9056, fp: 2.7726, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 72031 dynamic_size: 10 +filter out voxels: 48834 +First batch: fn: 0.9001, fp: 2.7608, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 71461 dynamic_size: 10 +filter out voxels: 48636 +First batch: fn: 0.8936, fp: 2.7383, label 0: tensor(556), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 70972 dynamic_size: 10 +filter out voxels: 48541 +First batch: fn: 0.8878, fp: 2.7193, label 0: tensor(496), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 70956 dynamic_size: 10 +filter out voxels: 48724 +First batch: fn: 0.8840, fp: 2.7222, label 0: tensor(537), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 70473 dynamic_size: 10 +filter out voxels: 48532 +First batch: fn: 0.8822, fp: 2.6994, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:00.296] dice before refine 0.037149377167224884 and after 0.06667641550302505, label 0: tensor(509, device='cuda:0'), label 1: tensor(501, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 30548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:00.796] dice before refine 0.03947385773062706 and after 0.03859706595540047, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 82398 dynamic_size: 10 +filter out voxels: 42586 +First batch: fn: 0.9459, fp: 1.7515, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 80461 dynamic_size: 10 +filter out voxels: 42547 +First batch: fn: 0.9422, fp: 1.6918, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 78419 dynamic_size: 10 +filter out voxels: 42052 +First batch: fn: 0.9376, fp: 1.6294, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 77127 dynamic_size: 10 +filter out voxels: 41974 +First batch: fn: 0.9278, fp: 1.5970, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76638 dynamic_size: 10 +filter out voxels: 42285 +First batch: fn: 0.9272, fp: 1.5816, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75658 dynamic_size: 10 +filter out voxels: 41956 +First batch: fn: 0.9206, fp: 1.5560, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75269 dynamic_size: 10 +filter out voxels: 42062 +First batch: fn: 0.9146, fp: 1.5494, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74344 dynamic_size: 10 +filter out voxels: 41723 +First batch: fn: 0.9135, fp: 1.5201, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74174 dynamic_size: 10 +filter out voxels: 41877 +First batch: fn: 0.9110, fp: 1.5171, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 73858 dynamic_size: 10 +filter out voxels: 41854 +First batch: fn: 0.9089, fp: 1.5089, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:12.058] dice before refine 0.04207717999815941 and after 0.07039148360490799, label 0: tensor(507, device='cuda:0'), label 1: tensor(503, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 23425 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:12.521] dice before refine 0.46548664569854736 and after 0.48316338658332825, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 25801 dynamic_size: 10 +filter out voxels: 1238 +First batch: fn: 0.4852, fp: 0.6163, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22651 dynamic_size: 10 +filter out voxels: 1106 +First batch: fn: 0.4485, fp: 0.5185, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21749 dynamic_size: 10 +filter out voxels: 1108 +First batch: fn: 0.4223, fp: 0.5062, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20843 dynamic_size: 10 +filter out voxels: 1064 +First batch: fn: 0.4056, fp: 0.4841, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19870 dynamic_size: 10 +filter out voxels: 999 +First batch: fn: 0.3901, fp: 0.4581, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19016 dynamic_size: 10 +filter out voxels: 935 +First batch: fn: 0.3748, fp: 0.4370, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18200 dynamic_size: 10 +filter out voxels: 925 +First batch: fn: 0.3571, fp: 0.4199, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17701 dynamic_size: 10 +filter out voxels: 923 +First batch: fn: 0.3445, fp: 0.4112, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17432 dynamic_size: 10 +filter out voxels: 972 +First batch: fn: 0.3325, fp: 0.4117, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16818 dynamic_size: 10 +filter out voxels: 929 +First batch: fn: 0.3222, fp: 0.3957, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:22.890] dice before refine 0.4956962764263153 and after 0.6622840166091919, label 0: tensor(505, device='cuda:0'), label 1: tensor(505, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25823 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:23.362] dice before refine 0.4767422378063202 and after 0.48062893748283386, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 28407 dynamic_size: 10 +filter out voxels: 100 +First batch: fn: 0.4910, fp: 0.6091, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26856 dynamic_size: 10 +filter out voxels: 73 +First batch: fn: 0.4573, fp: 0.5827, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25191 dynamic_size: 10 +filter out voxels: 32 +First batch: fn: 0.4364, fp: 0.5391, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23682 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.4232, fp: 0.4939, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22942 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.4144, fp: 0.4740, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22057 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.3998, fp: 0.4544, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20977 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.3874, fp: 0.4250, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20183 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.3763, fp: 0.4053, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19396 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.3658, fp: 0.3853, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18789 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.3568, fp: 0.3708, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:34.192] dice before refine 0.49934789538383484 and after 0.6445888876914978, label 0: tensor(504, device='cuda:0'), label 1: tensor(506, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 69252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:34.773] dice before refine 0.476798415184021 and after 0.46645140647888184, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 60482 dynamic_size: 10 +filter out voxels: 288 +First batch: fn: 0.6182, fp: 0.2551, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58901 dynamic_size: 10 +filter out voxels: 224 +First batch: fn: 0.6080, fp: 0.2425, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 57840 dynamic_size: 10 +filter out voxels: 214 +First batch: fn: 0.6016, fp: 0.2336, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56186 dynamic_size: 10 +filter out voxels: 205 +First batch: fn: 0.5919, fp: 0.2194, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 55387 dynamic_size: 10 +filter out voxels: 215 +First batch: fn: 0.5821, fp: 0.2177, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 54216 dynamic_size: 10 +filter out voxels: 215 +First batch: fn: 0.5707, fp: 0.2122, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53402 dynamic_size: 10 +filter out voxels: 213 +First batch: fn: 0.5660, fp: 0.2051, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 52317 dynamic_size: 10 +filter out voxels: 206 +First batch: fn: 0.5613, fp: 0.1942, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 51793 dynamic_size: 10 +filter out voxels: 211 +First batch: fn: 0.5549, fp: 0.1930, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50582 dynamic_size: 10 +filter out voxels: 199 +First batch: fn: 0.5494, fp: 0.1810, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:46.377] dice before refine 0.47586119174957275 and after 0.5562226176261902, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 92139 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:46.996] dice before refine 0.4385472536087036 and after 0.4328904151916504, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 75370 dynamic_size: 10 +filter out voxels: 34 +First batch: fn: 0.6878, fp: 0.1302, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 73699 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.6786, fp: 0.1213, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 72711 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.6769, fp: 0.1123, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 71369 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.6649, fp: 0.1097, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 70716 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.6629, fp: 0.1046, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 69825 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.6606, fp: 0.0972, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 68448 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.6453, fp: 0.0976, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 68107 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.6455, fp: 0.0937, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 67802 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.6444, fp: 0.0915, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 66948 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.6367, fp: 0.0899, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:58.836] dice before refine 0.4384496510028839 and after 0.510100245475769, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 10350 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:00:59.280] dice before refine 0.24861639738082886 and after 0.2808257043361664, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 13030 dynamic_size: 10 +filter out voxels: 2431 +First batch: fn: 0.7542, fp: 0.5047, label 0: tensor(414), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11538 dynamic_size: 10 +filter out voxels: 1868 +First batch: fn: 0.7369, fp: 0.3779, label 0: tensor(393), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10896 dynamic_size: 10 +filter out voxels: 1877 +First batch: fn: 0.6939, fp: 0.3588, label 0: tensor(354), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10431 dynamic_size: 10 +filter out voxels: 1910 +First batch: fn: 0.6597, fp: 0.3481, label 0: tensor(313), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9841 dynamic_size: 10 +filter out voxels: 1916 +First batch: fn: 0.6010, fp: 0.3499, label 0: tensor(309), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9456 dynamic_size: 10 +filter out voxels: 1916 +First batch: fn: 0.5670, fp: 0.3467, label 0: tensor(302), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8821 dynamic_size: 10 +filter out voxels: 1858 +First batch: fn: 0.5161, fp: 0.3361, label 0: tensor(328), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8503 dynamic_size: 10 +filter out voxels: 1860 +First batch: fn: 0.4853, fp: 0.3362, label 0: tensor(331), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8148 dynamic_size: 10 +filter out voxels: 1842 +First batch: fn: 0.4574, fp: 0.3299, label 0: tensor(301), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7917 dynamic_size: 10 +filter out voxels: 1859 +First batch: fn: 0.4291, fp: 0.3358, label 0: tensor(347), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:01:08.470] dice before refine 0.26225438714027405 and after 0.6151355504989624, label 0: tensor(347, device='cuda:0'), label 1: tensor(505, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 9566 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:01:08.897] dice before refine 0.254607617855072 and after 0.26440247893333435, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 9270 dynamic_size: 10 +filter out voxels: 1275 +First batch: fn: 0.8258, fp: 0.1432, label 0: tensor(48), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8911 dynamic_size: 10 +filter out voxels: 1376 +First batch: fn: 0.7725, fp: 0.1590, label 0: tensor(64), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8620 dynamic_size: 10 +filter out voxels: 1340 +First batch: fn: 0.7460, fp: 0.1551, label 0: tensor(57), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7984 dynamic_size: 10 +filter out voxels: 1303 +First batch: fn: 0.6807, fp: 0.1539, label 0: tensor(98), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7556 dynamic_size: 10 +filter out voxels: 1252 +First batch: fn: 0.6401, fp: 0.1498, label 0: tensor(78), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7127 dynamic_size: 10 +filter out voxels: 1236 +First batch: fn: 0.5948, fp: 0.1502, label 0: tensor(111), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6825 dynamic_size: 10 +filter out voxels: 1209 +First batch: fn: 0.5655, fp: 0.1479, label 0: tensor(92), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6383 dynamic_size: 10 +filter out voxels: 1208 +First batch: fn: 0.5187, fp: 0.1485, label 0: tensor(139), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6094 dynamic_size: 10 +filter out voxels: 1142 +First batch: fn: 0.4937, fp: 0.1433, label 0: tensor(121), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5825 dynamic_size: 10 +filter out voxels: 1122 +First batch: fn: 0.4686, fp: 0.1403, label 0: tensor(93), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:01:16.109] dice before refine 0.26055312156677246 and after 0.6527829170227051, label 0: tensor(93, device='cuda:0'), label 1: tensor(507, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.4188787476582961 +[22:01:16.656] epoch: 1/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.4188787476582961 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:01:17.173] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(26, device='cuda:0') +num_clicks 10 points_length: 14921 dynamic_size: 10 +filter out voxels: 14793 +First batch: fn: 1.0000, fp: 115.5703, label 0: tensor(10), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15511 dynamic_size: 10 +filter out voxels: 15383 +First batch: fn: 1.0000, fp: 120.1797, label 0: tensor(10), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15877 dynamic_size: 10 +filter out voxels: 15749 +First batch: fn: 1.0000, fp: 123.0391, label 0: tensor(10), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15836 dynamic_size: 10 +filter out voxels: 15715 +First batch: fn: 0.9453, fp: 122.7734, label 0: tensor(10), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15777 dynamic_size: 10 +filter out voxels: 15667 +First batch: fn: 0.8438, fp: 122.4141, label 0: tensor(12), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15489 dynamic_size: 10 +filter out voxels: 15378 +First batch: fn: 0.8594, fp: 120.1484, label 0: tensor(11), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15564 dynamic_size: 10 +filter out voxels: 15458 +First batch: fn: 0.7656, fp: 120.8281, label 0: tensor(14), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15549 dynamic_size: 10 +filter out voxels: 15443 +First batch: fn: 0.7578, fp: 120.7188, label 0: tensor(15), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15599 dynamic_size: 10 +filter out voxels: 15493 +First batch: fn: 0.7422, fp: 121.1250, label 0: tensor(14), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15319 dynamic_size: 10 +filter out voxels: 15214 +First batch: fn: 0.7500, fp: 118.9297, label 0: tensor(15), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:01:20.125] dice before refine 0.0 and after 0.0045074052177369595, label 0: tensor(15, device='cuda:0'), label 1: tensor(12, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:01:20.479] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(17, device='cuda:0') +num_clicks 10 points_length: 4196 dynamic_size: 10 +filter out voxels: 4068 +First batch: fn: 1.0000, fp: 31.7812, label 0: tensor(10), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3597 dynamic_size: 10 +filter out voxels: 3484 +First batch: fn: 0.8359, fp: 27.2656, label 0: tensor(14), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3623 dynamic_size: 10 +filter out voxels: 3512 +First batch: fn: 0.7500, fp: 27.5547, label 0: tensor(18), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3428 dynamic_size: 10 +filter out voxels: 3310 +First batch: fn: 0.6875, fp: 26.0938, label 0: tensor(14), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3641 dynamic_size: 10 +filter out voxels: 3513 +First batch: fn: 0.5938, fp: 27.8516, label 0: tensor(24), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2982 dynamic_size: 10 +filter out voxels: 2862 +First batch: fn: 0.6016, fp: 22.6953, label 0: tensor(24), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3557 dynamic_size: 10 +filter out voxels: 3433 +First batch: fn: 0.5938, fp: 27.1953, label 0: tensor(18), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3592 dynamic_size: 10 +filter out voxels: 3467 +First batch: fn: 0.5938, fp: 27.4688, label 0: tensor(17), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2729 dynamic_size: 10 +filter out voxels: 2614 +First batch: fn: 0.6094, fp: 20.7109, label 0: tensor(21), label 1: tensor(4) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2877 dynamic_size: 10 +filter out voxels: 2758 +First batch: fn: 0.6094, fp: 21.8672, label 0: tensor(14), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:01:23.479] dice before refine 0.0 and after 0.02812499925494194, label 0: tensor(14, device='cuda:0'), label 1: tensor(33, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.02419630311090838 +[22:01:24.060] epoch: 1/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.02419630311090838 stich left and right side (total size): 1 +[22:01:24.060] - Val metrics mean dice: 0.23287467283681648 +Checkpoint Directory exists! +[22:01:24.915] - Val metrics best mean dice: 0.23287467283681648 at epoch 1 +num_clicks 50 points_length: 6178 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(279) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2823109030723572 and after 0.2610437273979187 +num_clicks 50 points_length: 21316 dynamic_size: 13 +filter out voxels: 95 +filter out voxels: 18160 +First batch: fn: 0.6840, fp: 1.2634, label 0: tensor(33), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26479607820510864 and after 0.28737276792526245 +num_clicks 50 points_length: 19396 dynamic_size: 23 +filter out voxels: 90 +filter out voxels: 16763 +First batch: fn: 0.6497, fp: 1.3128, label 0: tensor(80), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26924216747283936 and after 0.320845365524292 +num_clicks 50 points_length: 18540 dynamic_size: 46 +filter out voxels: 83 +filter out voxels: 16362 +First batch: fn: 0.5977, fp: 1.2138, label 0: tensor(31), label 1: tensor(459) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2703724801540375 and after 0.3443891406059265 +num_clicks 50 points_length: 17837 dynamic_size: 8 +filter out voxels: 88 +filter out voxels: 15868 +First batch: fn: 0.5395, fp: 1.2779, label 0: tensor(5), label 1: tensor(497) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2663828730583191 and after 0.36261171102523804 +num_clicks 50 points_length: 17986 dynamic_size: 37 +filter out voxels: 97 +filter out voxels: 16168 +First batch: fn: 0.4807, fp: 1.3108, label 0: tensor(27), label 1: tensor(403) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27628427743911743 and after 0.3844246566295624 +num_clicks 50 points_length: 16867 dynamic_size: 45 +filter out voxels: 89 +filter out voxels: 15145 +First batch: fn: 0.4439, fp: 1.2637, label 0: tensor(31), label 1: tensor(405) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27829694747924805 and after 0.39982736110687256 +num_clicks 50 points_length: 16706 dynamic_size: 20 +filter out voxels: 84 +filter out voxels: 15058 +First batch: fn: 0.4110, fp: 1.2178, label 0: tensor(16), label 1: tensor(287) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28377124667167664 and after 0.40973275899887085 +num_clicks 50 points_length: 16154 dynamic_size: 9 +filter out voxels: 83 +filter out voxels: 14538 +First batch: fn: 0.3833, fp: 1.2430, label 0: tensor(8), label 1: tensor(369) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27477240562438965 and after 0.41112226247787476 +num_clicks 50 points_length: 17016 dynamic_size: 49 +filter out voxels: 83 +filter out voxels: 15429 +First batch: fn: 0.3594, fp: 1.2494, label 0: tensor(42), label 1: tensor(375) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28133589029312134 and after 0.4287467896938324 +num_clicks 50 points_length: 16420 dynamic_size: 44 +filter out voxels: 81 +filter out voxels: 14860 +First batch: fn: 0.3382, fp: 1.1577, label 0: tensor(35), label 1: tensor(346) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2826794683933258 and after 0.4361032545566559 +epoch: 2/20, iter: 0/42: loss:3.3353: rank:-1 +[22:01:53.717] epoch: 2/20, iter: 0/42: loss:3.3353: rank:-1 +num_clicks 50 points_length: 2138 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09457868337631226 and after 0.046491023153066635 +num_clicks 50 points_length: 7406 dynamic_size: 40 +filter out voxels: 69 +filter out voxels: 31730 +First batch: fn: 1.0000, fp: 0.0094, label 0: tensor(1), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09641622006893158 and after 0.05084829032421112 +num_clicks 50 points_length: 7496 dynamic_size: 12 +filter out voxels: 159 +filter out voxels: 29849 +First batch: fn: 1.0000, fp: 0.0217, label 0: tensor(0), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0918339416384697 and after 0.049628376960754395 +num_clicks 50 points_length: 7494 dynamic_size: 19 +filter out voxels: 157 +filter out voxels: 31321 +First batch: fn: 1.0000, fp: 0.0214, label 0: tensor(0), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12854813039302826 and after 0.06276100128889084 +num_clicks 50 points_length: 7498 dynamic_size: 49 +filter out voxels: 161 +filter out voxels: 23518 +First batch: fn: 1.0000, fp: 0.0219, label 0: tensor(2), label 1: tensor(120) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12440431118011475 and after 0.06326081603765488 +num_clicks 50 points_length: 7489 dynamic_size: 20 +filter out voxels: 158 +filter out voxels: 23628 +First batch: fn: 0.9992, fp: 0.0215, label 0: tensor(1), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12837137281894684 and after 0.06819068640470505 +num_clicks 50 points_length: 7462 dynamic_size: 12 +filter out voxels: 158 +filter out voxels: 23013 +First batch: fn: 0.9955, fp: 0.0215, label 0: tensor(0), label 1: tensor(182) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13191887736320496 and after 0.07897021621465683 +num_clicks 50 points_length: 7395 dynamic_size: 15 +filter out voxels: 166 +filter out voxels: 22742 +First batch: fn: 0.9853, fp: 0.0226, label 0: tensor(0), label 1: tensor(256) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13696715235710144 and after 0.10292953252792358 +num_clicks 50 points_length: 7216 dynamic_size: 37 +filter out voxels: 163 +filter out voxels: 22203 +First batch: fn: 0.9613, fp: 0.0222, label 0: tensor(4), label 1: tensor(360) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14611290395259857 and after 0.13717631995677948 +num_clicks 50 points_length: 6950 dynamic_size: 50 +filter out voxels: 144 +filter out voxels: 20722 +First batch: fn: 0.9275, fp: 0.0198, label 0: tensor(1), label 1: tensor(383) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14652125537395477 and after 0.16976511478424072 +num_clicks 50 points_length: 6685 dynamic_size: 50 +filter out voxels: 144 +filter out voxels: 20320 +First batch: fn: 0.8904, fp: 0.0207, label 0: tensor(3), label 1: tensor(356) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1387336403131485 and after 0.20060992240905762 +epoch: 2/20, iter: 1/42: loss:4.0682: rank:-1 +[22:02:04.324] epoch: 2/20, iter: 1/42: loss:4.0682: rank:-1 +num_clicks 50 points_length: 859 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32428178191185 and after 0.3187319040298462 +num_clicks 50 points_length: 5304 dynamic_size: 21 +filter out voxels: 5115 +filter out voxels: 4359 +First batch: fn: 0.5411, fp: 0.2715, label 0: tensor(6), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33336925506591797 and after 0.33995258808135986 +num_clicks 50 points_length: 4812 dynamic_size: 7 +filter out voxels: 4897 +filter out voxels: 4011 +First batch: fn: 0.5087, fp: 0.2585, label 0: tensor(4), label 1: tensor(163) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33216628432273865 and after 0.33617815375328064 +num_clicks 50 points_length: 4891 dynamic_size: 32 +filter out voxels: 5343 +filter out voxels: 4138 +First batch: fn: 0.5048, fp: 0.2933, label 0: tensor(12), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33241409063339233 and after 0.34323930740356445 +num_clicks 50 points_length: 4550 dynamic_size: 3 +filter out voxels: 5232 +filter out voxels: 3850 +First batch: fn: 0.5029, fp: 0.2865, label 0: tensor(1), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33175352215766907 and after 0.34956806898117065 +num_clicks 50 points_length: 5064 dynamic_size: 7 +filter out voxels: 5447 +filter out voxels: 4400 +First batch: fn: 0.4921, fp: 0.3001, label 0: tensor(2), label 1: tensor(190) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33232325315475464 and after 0.35924220085144043 +num_clicks 50 points_length: 4697 dynamic_size: 11 +filter out voxels: 5316 +filter out voxels: 4076 +First batch: fn: 0.4857, fp: 0.2926, label 0: tensor(2), label 1: tensor(203) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33237743377685547 and after 0.3662105202674866 +num_clicks 50 points_length: 4814 dynamic_size: 17 +filter out voxels: 5153 +filter out voxels: 4216 +First batch: fn: 0.4840, fp: 0.2827, label 0: tensor(5), label 1: tensor(189) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33296680450439453 and after 0.3748263716697693 +num_clicks 50 points_length: 4467 dynamic_size: 35 +filter out voxels: 5176 +filter out voxels: 3881 +First batch: fn: 0.4765, fp: 0.2833, label 0: tensor(10), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3334309458732605 and after 0.38283246755599976 +num_clicks 50 points_length: 4199 dynamic_size: 30 +filter out voxels: 5118 +filter out voxels: 3622 +First batch: fn: 0.4715, fp: 0.2793, label 0: tensor(12), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3336382508277893 and after 0.3848176598548889 +num_clicks 50 points_length: 4272 dynamic_size: 48 +filter out voxels: 5021 +filter out voxels: 3696 +First batch: fn: 0.4687, fp: 0.2719, label 0: tensor(17), label 1: tensor(214) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33386895060539246 and after 0.39360982179641724 +epoch: 2/20, iter: 2/42: loss:3.1733: rank:-1 +[22:02:16.697] epoch: 2/20, iter: 2/42: loss:3.1733: rank:-1 +num_clicks 50 points_length: 9222 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(285) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5584779977798462 and after 0.5975524187088013 +num_clicks 50 points_length: 7925 dynamic_size: 25 +filter out voxels: 527 +filter out voxels: 0 +First batch: fn: 0.4649, fp: 0.0623, label 0: tensor(500), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5812972784042358 and after 0.6652922630310059 +num_clicks 50 points_length: 6060 dynamic_size: 3 +filter out voxels: 347 +filter out voxels: 0 +First batch: fn: 0.4403, fp: 0.0471, label 0: tensor(295), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5829777717590332 and after 0.6956161260604858 +num_clicks 50 points_length: 5545 dynamic_size: 44 +filter out voxels: 356 +filter out voxels: 0 +First batch: fn: 0.4191, fp: 0.0440, label 0: tensor(134), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5878030061721802 and after 0.7160048484802246 +num_clicks 50 points_length: 5158 dynamic_size: 23 +filter out voxels: 373 +filter out voxels: 0 +First batch: fn: 0.3941, fp: 0.0474, label 0: tensor(219), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5876219272613525 and after 0.7323691248893738 +num_clicks 50 points_length: 4791 dynamic_size: 7 +filter out voxels: 344 +filter out voxels: 0 +First batch: fn: 0.3828, fp: 0.0450, label 0: tensor(245), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.58896803855896 and after 0.7478101253509521 +num_clicks 50 points_length: 4565 dynamic_size: 1 +filter out voxels: 334 +filter out voxels: 0 +First batch: fn: 0.3626, fp: 0.0439, label 0: tensor(311), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.588010311126709 and after 0.7604005336761475 +num_clicks 50 points_length: 4343 dynamic_size: 5 +filter out voxels: 312 +filter out voxels: 0 +First batch: fn: 0.3515, fp: 0.0398, label 0: tensor(230), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5938481092453003 and after 0.7725592851638794 +num_clicks 50 points_length: 4181 dynamic_size: 8 +filter out voxels: 318 +filter out voxels: 0 +First batch: fn: 0.3345, fp: 0.0431, label 0: tensor(156), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5956944227218628 and after 0.7809005975723267 +num_clicks 50 points_length: 4013 dynamic_size: 41 +filter out voxels: 304 +filter out voxels: 0 +First batch: fn: 0.3216, fp: 0.0411, label 0: tensor(76), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5971872806549072 and after 0.7875487804412842 +num_clicks 50 points_length: 3989 dynamic_size: 49 +filter out voxels: 329 +filter out voxels: 0 +First batch: fn: 0.3056, fp: 0.0436, label 0: tensor(77), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5985288619995117 and after 0.7936333417892456 +epoch: 2/20, iter: 3/42: loss:2.1544: rank:-1 +[22:02:37.342] epoch: 2/20, iter: 3/42: loss:2.1544: rank:-1 +num_clicks 50 points_length: 858 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26127222180366516 and after 0.2586286664009094 +num_clicks 50 points_length: 35473 dynamic_size: 2 +filter out voxels: 43681 +filter out voxels: 479 +First batch: fn: 0.0047, fp: 80.7249, label 0: tensor(502), label 1: tensor(4) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2768225371837616 and after 0.2752155363559723 +num_clicks 50 points_length: 34220 dynamic_size: 2 +filter out voxels: 35327 +filter out voxels: 397 +First batch: fn: 0.0070, fp: 67.4697, label 0: tensor(502), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2793657183647156 and after 0.2843511998653412 +num_clicks 50 points_length: 33457 dynamic_size: 48 +filter out voxels: 35281 +filter out voxels: 406 +First batch: fn: 0.0070, fp: 66.2727, label 0: tensor(548), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2789551317691803 and after 0.287751168012619 +num_clicks 50 points_length: 33335 dynamic_size: 24 +filter out voxels: 35051 +filter out voxels: 426 +First batch: fn: 0.0070, fp: 64.6795, label 0: tensor(524), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2820720374584198 and after 0.2945629358291626 +num_clicks 50 points_length: 32521 dynamic_size: 20 +filter out voxels: 35159 +filter out voxels: 401 +First batch: fn: 0.0070, fp: 63.9732, label 0: tensor(520), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28076058626174927 and after 0.29514580965042114 +num_clicks 50 points_length: 32688 dynamic_size: 49 +filter out voxels: 34905 +filter out voxels: 427 +First batch: fn: 0.0070, fp: 62.5979, label 0: tensor(549), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2819952368736267 and after 0.30147498846054077 +num_clicks 50 points_length: 31903 dynamic_size: 31 +filter out voxels: 34848 +filter out voxels: 374 +First batch: fn: 0.0070, fp: 61.3205, label 0: tensor(531), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2818051278591156 and after 0.30328211188316345 +num_clicks 50 points_length: 31792 dynamic_size: 30 +filter out voxels: 34895 +filter out voxels: 394 +First batch: fn: 0.0093, fp: 60.7960, label 0: tensor(530), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28297117352485657 and after 0.3068554699420929 +num_clicks 50 points_length: 31482 dynamic_size: 29 +filter out voxels: 34277 +filter out voxels: 378 +First batch: fn: 0.0093, fp: 58.7669, label 0: tensor(529), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28140997886657715 and after 0.3092271685600281 +num_clicks 50 points_length: 31155 dynamic_size: 45 +filter out voxels: 35055 +filter out voxels: 349 +First batch: fn: 0.0105, fp: 59.4196, label 0: tensor(545), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2839059829711914 and after 0.3144727647304535 +epoch: 2/20, iter: 4/42: loss:3.344: rank:-1 +[22:02:54.529] epoch: 2/20, iter: 4/42: loss:3.344: rank:-1 +num_clicks 50 points_length: 2117 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25610342621803284 and after 0.29428285360336304 +num_clicks 50 points_length: 2158 dynamic_size: 35 +filter out voxels: 71 +filter out voxels: 3334 +First batch: fn: 0.9858, fp: 0.0335, label 0: tensor(3), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.275175541639328 and after 0.3820066452026367 +num_clicks 50 points_length: 1987 dynamic_size: 2 +filter out voxels: 75 +filter out voxels: 3294 +First batch: fn: 0.9032, fp: 0.0354, label 0: tensor(0), label 1: tensor(253) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2806259095668793 and after 0.5056649446487427 +num_clicks 50 points_length: 1661 dynamic_size: 49 +filter out voxels: 75 +filter out voxels: 3314 +First batch: fn: 0.7416, fp: 0.0430, label 0: tensor(12), label 1: tensor(283) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2814735174179077 and after 0.5750687122344971 +num_clicks 50 points_length: 1408 dynamic_size: 44 +filter out voxels: 68 +filter out voxels: 3170 +First batch: fn: 0.6145, fp: 0.0505, label 0: tensor(17), label 1: tensor(231) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28304436802864075 and after 0.6154389381408691 +num_clicks 50 points_length: 1286 dynamic_size: 38 +filter out voxels: 68 +filter out voxels: 3221 +First batch: fn: 0.5413, fp: 0.0661, label 0: tensor(34), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2856496274471283 and after 0.6307801008224487 +num_clicks 50 points_length: 1234 dynamic_size: 12 +filter out voxels: 61 +filter out voxels: 3161 +First batch: fn: 0.5154, fp: 0.0675, label 0: tensor(25), label 1: tensor(237) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2873777151107788 and after 0.6530933380126953 +num_clicks 50 points_length: 1164 dynamic_size: 19 +filter out voxels: 61 +filter out voxels: 3196 +First batch: fn: 0.4601, fp: 0.0897, label 0: tensor(51), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2855123281478882 and after 0.6535509824752808 +num_clicks 50 points_length: 1134 dynamic_size: 5 +filter out voxels: 60 +filter out voxels: 3069 +First batch: fn: 0.4549, fp: 0.0808, label 0: tensor(46), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2858627140522003 and after 0.6640903949737549 +num_clicks 50 points_length: 1096 dynamic_size: 31 +filter out voxels: 61 +filter out voxels: 3107 +First batch: fn: 0.4308, fp: 0.0869, label 0: tensor(65), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2873642146587372 and after 0.6782492399215698 +num_clicks 50 points_length: 1064 dynamic_size: 32 +filter out voxels: 54 +filter out voxels: 3137 +First batch: fn: 0.4180, fp: 0.0846, label 0: tensor(40), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28746122121810913 and after 0.6875095367431641 +epoch: 2/20, iter: 5/42: loss:3.0277: rank:-1 +[22:03:07.179] epoch: 2/20, iter: 5/42: loss:3.0277: rank:-1 +num_clicks 50 points_length: 22605 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(332) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5045893788337708 and after 0.563025951385498 +num_clicks 50 points_length: 19593 dynamic_size: 8 +filter out voxels: 3808 +filter out voxels: 0 +First batch: fn: 0.6810, fp: 0.1858, label 0: tensor(78), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5307484865188599 and after 0.6457000970840454 +num_clicks 50 points_length: 16620 dynamic_size: 3 +filter out voxels: 3893 +filter out voxels: 0 +First batch: fn: 0.5500, fp: 0.1853, label 0: tensor(84), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5353823900222778 and after 0.6889866590499878 +num_clicks 50 points_length: 14867 dynamic_size: 36 +filter out voxels: 3867 +filter out voxels: 0 +First batch: fn: 0.4749, fp: 0.1827, label 0: tensor(94), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5384500622749329 and after 0.7241955995559692 +num_clicks 50 points_length: 13583 dynamic_size: 15 +filter out voxels: 3820 +filter out voxels: 0 +First batch: fn: 0.4157, fp: 0.1852, label 0: tensor(155), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5348705649375916 and after 0.7541667222976685 +num_clicks 50 points_length: 12081 dynamic_size: 33 +filter out voxels: 3676 +filter out voxels: 0 +First batch: fn: 0.3543, fp: 0.1801, label 0: tensor(151), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.536507248878479 and after 0.7806639671325684 +num_clicks 50 points_length: 11149 dynamic_size: 10 +filter out voxels: 3665 +filter out voxels: 0 +First batch: fn: 0.3088, fp: 0.1844, label 0: tensor(148), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.53811115026474 and after 0.8021788597106934 +num_clicks 50 points_length: 10225 dynamic_size: 49 +filter out voxels: 3603 +filter out voxels: 0 +First batch: fn: 0.2610, fp: 0.1913, label 0: tensor(193), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5373733043670654 and after 0.8212476968765259 +num_clicks 50 points_length: 9270 dynamic_size: 11 +filter out voxels: 3531 +filter out voxels: 0 +First batch: fn: 0.2208, fp: 0.1893, label 0: tensor(205), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5377379059791565 and after 0.8338233232498169 +num_clicks 50 points_length: 8633 dynamic_size: 50 +filter out voxels: 3458 +filter out voxels: 0 +First batch: fn: 0.1889, fp: 0.1930, label 0: tensor(234), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5381559133529663 and after 0.8464528918266296 +num_clicks 50 points_length: 8042 dynamic_size: 14 +filter out voxels: 3424 +filter out voxels: 0 +First batch: fn: 0.1605, fp: 0.1952, label 0: tensor(197), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5398540496826172 and after 0.8578147888183594 +epoch: 2/20, iter: 6/42: loss:1.9549: rank:-1 +[22:03:25.607] epoch: 2/20, iter: 6/42: loss:1.9549: rank:-1 +num_clicks 50 points_length: 11227 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47983741760253906 and after 0.6060025691986084 +num_clicks 50 points_length: 10880 dynamic_size: 9 +filter out voxels: 2488 +filter out voxels: 426 +First batch: fn: 0.4252, fp: 0.5439, label 0: tensor(379), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5102666616439819 and after 0.6865686178207397 +num_clicks 50 points_length: 9050 dynamic_size: 9 +filter out voxels: 2449 +filter out voxels: 353 +First batch: fn: 0.2396, fp: 0.5665, label 0: tensor(508), label 1: tensor(313) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5212932825088501 and after 0.7280179262161255 +num_clicks 50 points_length: 7546 dynamic_size: 49 +filter out voxels: 2243 +filter out voxels: 346 +First batch: fn: 0.1654, fp: 0.5067, label 0: tensor(535), label 1: tensor(289) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5253850221633911 and after 0.7595158219337463 +num_clicks 50 points_length: 6683 dynamic_size: 34 +filter out voxels: 2184 +filter out voxels: 339 +First batch: fn: 0.1114, fp: 0.4838, label 0: tensor(452), label 1: tensor(262) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5269938111305237 and after 0.7792251110076904 +num_clicks 50 points_length: 6242 dynamic_size: 10 +filter out voxels: 2162 +filter out voxels: 357 +First batch: fn: 0.0767, fp: 0.4793, label 0: tensor(510), label 1: tensor(209) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5294700860977173 and after 0.7971929311752319 +num_clicks 50 points_length: 5759 dynamic_size: 8 +filter out voxels: 2137 +filter out voxels: 355 +First batch: fn: 0.0584, fp: 0.4545, label 0: tensor(540), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.530860185623169 and after 0.8098441362380981 +num_clicks 50 points_length: 5256 dynamic_size: 29 +filter out voxels: 2095 +filter out voxels: 338 +First batch: fn: 0.0508, fp: 0.4174, label 0: tensor(553), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5302294492721558 and after 0.8160943984985352 +num_clicks 50 points_length: 5057 dynamic_size: 17 +filter out voxels: 2086 +filter out voxels: 328 +First batch: fn: 0.0503, fp: 0.4001, label 0: tensor(545), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5120121240615845 and after 0.8210036754608154 +num_clicks 50 points_length: 4806 dynamic_size: 11 +filter out voxels: 2041 +filter out voxels: 327 +First batch: fn: 0.0580, fp: 0.3701, label 0: tensor(279), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.535663366317749 and after 0.8168456554412842 +num_clicks 50 points_length: 4979 dynamic_size: 41 +filter out voxels: 2142 +filter out voxels: 363 +First batch: fn: 0.0463, fp: 0.3972, label 0: tensor(388), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5325732827186584 and after 0.8225345611572266 +epoch: 2/20, iter: 7/42: loss:1.7372: rank:-1 +[22:03:45.844] epoch: 2/20, iter: 7/42: loss:1.7372: rank:-1 +num_clicks 50 points_length: 667 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3680608868598938 and after 0.3509341776371002 +num_clicks 50 points_length: 7545 dynamic_size: 36 +filter out voxels: 615 +filter out voxels: 3452 +First batch: fn: 0.0212, fp: 0.8251, label 0: tensor(327), label 1: tensor(211) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.367734432220459 and after 0.3583335280418396 +num_clicks 50 points_length: 6617 dynamic_size: 45 +filter out voxels: 391 +filter out voxels: 3281 +First batch: fn: 0.0138, fp: 0.8045, label 0: tensor(544), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3793675899505615 and after 0.37086841464042664 +num_clicks 50 points_length: 6266 dynamic_size: 10 +filter out voxels: 336 +filter out voxels: 3225 +First batch: fn: 0.0131, fp: 0.7364, label 0: tensor(401), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36981070041656494 and after 0.3751331865787506 +num_clicks 50 points_length: 6215 dynamic_size: 1 +filter out voxels: 348 +filter out voxels: 3246 +First batch: fn: 0.0096, fp: 0.7689, label 0: tensor(362), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3709195554256439 and after 0.38099205493927 +num_clicks 50 points_length: 6059 dynamic_size: 12 +filter out voxels: 329 +filter out voxels: 3200 +First batch: fn: 0.0091, fp: 0.7515, label 0: tensor(401), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37157055735588074 and after 0.386049747467041 +num_clicks 50 points_length: 6030 dynamic_size: 38 +filter out voxels: 329 +filter out voxels: 3218 +First batch: fn: 0.0089, fp: 0.7383, label 0: tensor(367), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3793286979198456 and after 0.394954115152359 +num_clicks 50 points_length: 5925 dynamic_size: 16 +filter out voxels: 318 +filter out voxels: 3180 +First batch: fn: 0.0095, fp: 0.6969, label 0: tensor(380), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3806360960006714 and after 0.3989107608795166 +num_clicks 50 points_length: 5879 dynamic_size: 4 +filter out voxels: 320 +filter out voxels: 3177 +First batch: fn: 0.0093, fp: 0.6789, label 0: tensor(407), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3701837658882141 and after 0.39594441652297974 +num_clicks 50 points_length: 5789 dynamic_size: 16 +filter out voxels: 340 +filter out voxels: 3164 +First batch: fn: 0.0082, fp: 0.7177, label 0: tensor(279), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3691696524620056 and after 0.39693987369537354 +num_clicks 50 points_length: 5744 dynamic_size: 45 +filter out voxels: 341 +filter out voxels: 3145 +First batch: fn: 0.0081, fp: 0.7132, label 0: tensor(321), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3795693516731262 and after 0.40601396560668945 +epoch: 2/20, iter: 8/42: loss:2.9768: rank:-1 +[22:04:02.445] epoch: 2/20, iter: 8/42: loss:2.9768: rank:-1 +num_clicks 50 points_length: 71863 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3124501705169678 and after 0.335175484418869 +num_clicks 50 points_length: 60580 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 6386 +First batch: fn: 0.8222, fp: 0.0002, label 0: tensor(0), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34808942675590515 and after 0.3688821792602539 +num_clicks 50 points_length: 59049 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 6674 +First batch: fn: 0.7950, fp: 0.0003, label 0: tensor(0), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3495463728904724 and after 0.37768709659576416 +num_clicks 50 points_length: 58000 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 6167 +First batch: fn: 0.7902, fp: 0.0004, label 0: tensor(5), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34914061427116394 and after 0.3829078674316406 +num_clicks 50 points_length: 57462 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 6056 +First batch: fn: 0.7879, fp: 0.0003, label 0: tensor(1), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35134536027908325 and after 0.39066755771636963 +num_clicks 50 points_length: 56821 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 6049 +First batch: fn: 0.7839, fp: 0.0003, label 0: tensor(0), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.350398987531662 and after 0.3978936970233917 +num_clicks 50 points_length: 55930 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 5875 +First batch: fn: 0.7822, fp: 0.0003, label 0: tensor(2), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3524184823036194 and after 0.402865469455719 +num_clicks 50 points_length: 55313 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 5874 +First batch: fn: 0.7820, fp: 0.0003, label 0: tensor(3), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35345423221588135 and after 0.4112517237663269 +num_clicks 50 points_length: 54335 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 5770 +First batch: fn: 0.7799, fp: 0.0003, label 0: tensor(6), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35384032130241394 and after 0.413337767124176 +num_clicks 50 points_length: 54420 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 6102 +First batch: fn: 0.7784, fp: 0.0003, label 0: tensor(3), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35570186376571655 and after 0.4239744544029236 +num_clicks 50 points_length: 53099 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 5637 +First batch: fn: 0.7742, fp: 0.0003, label 0: tensor(15), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35216856002807617 and after 0.4285052418708801 +epoch: 2/20, iter: 9/42: loss:3.9566: rank:-1 +[22:04:23.143] epoch: 2/20, iter: 9/42: loss:3.9566: rank:-1 +num_clicks 50 points_length: 2108 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(164) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.02612917870283127 +num_clicks 50 points_length: 6914 dynamic_size: 1 +filter out voxels: 34065 +filter out voxels: 4869 +First batch: fn: 0.7203, fp: 15.0000, label 0: tensor(18), label 1: tensor(285) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.13038580119609833 +num_clicks 50 points_length: 6237 dynamic_size: 49 +filter out voxels: 36758 +filter out voxels: 4830 +First batch: fn: 0.3748, fp: 16.2289, label 0: tensor(158), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.1820448935031891 +num_clicks 50 points_length: 5492 dynamic_size: 12 +filter out voxels: 34596 +filter out voxels: 4349 +First batch: fn: 0.2565, fp: 15.2182, label 0: tensor(133), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.2088903784751892 +num_clicks 50 points_length: 5273 dynamic_size: 12 +filter out voxels: 34368 +filter out voxels: 4286 +First batch: fn: 0.1842, fp: 15.1226, label 0: tensor(44), label 1: tensor(176) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.22887510061264038 +num_clicks 50 points_length: 4962 dynamic_size: 44 +filter out voxels: 35163 +filter out voxels: 4071 +First batch: fn: 0.1007, fp: 15.5340, label 0: tensor(177), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.24664464592933655 +num_clicks 50 points_length: 4590 dynamic_size: 6 +filter out voxels: 32956 +filter out voxels: 3764 +First batch: fn: 0.0994, fp: 14.5146, label 0: tensor(116), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.25224724411964417 +num_clicks 50 points_length: 4560 dynamic_size: 4 +filter out voxels: 33145 +filter out voxels: 3770 +First batch: fn: 0.0826, fp: 14.6063, label 0: tensor(133), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.2535901665687561 +num_clicks 50 points_length: 4633 dynamic_size: 7 +filter out voxels: 32880 +filter out voxels: 3864 +First batch: fn: 0.0848, fp: 14.4613, label 0: tensor(138), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.2641896605491638 +num_clicks 50 points_length: 4344 dynamic_size: 20 +filter out voxels: 32484 +filter out voxels: 3609 +First batch: fn: 0.0830, fp: 14.2620, label 0: tensor(110), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.26096227765083313 +num_clicks 50 points_length: 4474 dynamic_size: 15 +filter out voxels: 33245 +filter out voxels: 3743 +First batch: fn: 0.0766, fp: 14.6110, label 0: tensor(114), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.2649092972278595 +epoch: 2/20, iter: 10/42: loss:4.0184: rank:-1 +[22:04:35.113] epoch: 2/20, iter: 10/42: loss:4.0184: rank:-1 +num_clicks 50 points_length: 957 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3684617280960083 and after 0.36627066135406494 +num_clicks 50 points_length: 39218 dynamic_size: 11 +filter out voxels: 1144 +filter out voxels: 39449 +First batch: fn: 0.3733, fp: 0.0843, label 0: tensor(3), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37613430619239807 and after 0.3736512362957001 +num_clicks 50 points_length: 37311 dynamic_size: 19 +filter out voxels: 628 +filter out voxels: 40885 +First batch: fn: 0.3566, fp: 0.0788, label 0: tensor(5), label 1: tensor(161) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3773581087589264 and after 0.3815925717353821 +num_clicks 50 points_length: 36484 dynamic_size: 41 +filter out voxels: 599 +filter out voxels: 40922 +First batch: fn: 0.3467, fp: 0.0790, label 0: tensor(10), label 1: tensor(227) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37746506929397583 and after 0.3905942440032959 +num_clicks 50 points_length: 35546 dynamic_size: 49 +filter out voxels: 605 +filter out voxels: 40822 +First batch: fn: 0.3355, fp: 0.0792, label 0: tensor(7), label 1: tensor(193) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3759256601333618 and after 0.3951161503791809 +num_clicks 50 points_length: 35111 dynamic_size: 46 +filter out voxels: 545 +filter out voxels: 40653 +First batch: fn: 0.3328, fp: 0.0768, label 0: tensor(9), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3768293559551239 and after 0.39903366565704346 +num_clicks 50 points_length: 34359 dynamic_size: 44 +filter out voxels: 509 +filter out voxels: 40484 +First batch: fn: 0.3248, fp: 0.0762, label 0: tensor(9), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37711000442504883 and after 0.40297824144363403 +num_clicks 50 points_length: 33689 dynamic_size: 9 +filter out voxels: 504 +filter out voxels: 40472 +First batch: fn: 0.3162, fp: 0.0769, label 0: tensor(2), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3776839077472687 and after 0.40568941831588745 +num_clicks 50 points_length: 33277 dynamic_size: 36 +filter out voxels: 543 +filter out voxels: 40500 +First batch: fn: 0.3099, fp: 0.0784, label 0: tensor(5), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3764497637748718 and after 0.40618157386779785 +num_clicks 50 points_length: 33069 dynamic_size: 48 +filter out voxels: 480 +filter out voxels: 40248 +First batch: fn: 0.3095, fp: 0.0764, label 0: tensor(12), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3767201900482178 and after 0.4081824719905853 +num_clicks 50 points_length: 32610 dynamic_size: 18 +filter out voxels: 467 +filter out voxels: 40257 +First batch: fn: 0.3051, fp: 0.0754, label 0: tensor(5), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.376528799533844 and after 0.4096167981624603 +epoch: 2/20, iter: 11/42: loss:3.3748: rank:-1 +[22:04:46.897] epoch: 2/20, iter: 11/42: loss:3.3748: rank:-1 +num_clicks 50 points_length: 17254 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6286138296127319 and after 0.6449843049049377 +num_clicks 50 points_length: 9502 dynamic_size: 22 +filter out voxels: 2718 +filter out voxels: 4738 +First batch: fn: 0.3169, fp: 0.2339, label 0: tensor(227), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6271412372589111 and after 0.6645649671554565 +num_clicks 50 points_length: 9971 dynamic_size: 10 +filter out voxels: 4037 +filter out voxels: 4241 +First batch: fn: 0.2593, fp: 0.3186, label 0: tensor(241), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6209185123443604 and after 0.6811597347259521 +num_clicks 50 points_length: 9823 dynamic_size: 13 +filter out voxels: 4602 +filter out voxels: 4242 +First batch: fn: 0.2135, fp: 0.3559, label 0: tensor(254), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6212929487228394 and after 0.705941915512085 +num_clicks 50 points_length: 8960 dynamic_size: 21 +filter out voxels: 4587 +filter out voxels: 4156 +First batch: fn: 0.1585, fp: 0.3608, label 0: tensor(283), label 1: tensor(372) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6257219910621643 and after 0.7234784364700317 +num_clicks 50 points_length: 8248 dynamic_size: 22 +filter out voxels: 4349 +filter out voxels: 4133 +First batch: fn: 0.1293, fp: 0.3487, label 0: tensor(283), label 1: tensor(341) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6283078193664551 and after 0.7395033836364746 +num_clicks 50 points_length: 7854 dynamic_size: 15 +filter out voxels: 4268 +filter out voxels: 4152 +First batch: fn: 0.1121, fp: 0.3431, label 0: tensor(295), label 1: tensor(281) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.629831075668335 and after 0.750137984752655 +num_clicks 50 points_length: 7586 dynamic_size: 9 +filter out voxels: 4154 +filter out voxels: 4122 +First batch: fn: 0.1024, fp: 0.3373, label 0: tensor(395), label 1: tensor(252) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6292132139205933 and after 0.7579535245895386 +num_clicks 50 points_length: 7364 dynamic_size: 39 +filter out voxels: 4058 +filter out voxels: 4081 +First batch: fn: 0.0989, fp: 0.3279, label 0: tensor(347), label 1: tensor(263) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.631140947341919 and after 0.768601655960083 +num_clicks 50 points_length: 7222 dynamic_size: 16 +filter out voxels: 4040 +filter out voxels: 4053 +First batch: fn: 0.0916, fp: 0.3270, label 0: tensor(419), label 1: tensor(269) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6298670768737793 and after 0.7755162119865417 +num_clicks 50 points_length: 7073 dynamic_size: 7 +filter out voxels: 3979 +filter out voxels: 3968 +First batch: fn: 0.0861, fp: 0.3239, label 0: tensor(435), label 1: tensor(261) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6299090385437012 and after 0.7813481092453003 +epoch: 2/20, iter: 12/42: loss:1.911: rank:-1 +[22:05:06.786] epoch: 2/20, iter: 12/42: loss:1.911: rank:-1 +num_clicks 50 points_length: 1815 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(256) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.014135288074612617 and after 0.042039476335048676 +num_clicks 50 points_length: 2520 dynamic_size: 9 +filter out voxels: 19840 +filter out voxels: 276 +First batch: fn: 0.7361, fp: 5.8815, label 0: tensor(8), label 1: tensor(304) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01285376027226448 and after 0.10659036040306091 +num_clicks 50 points_length: 2124 dynamic_size: 3 +filter out voxels: 22932 +filter out voxels: 244 +First batch: fn: 0.5904, fp: 6.8108, label 0: tensor(3), label 1: tensor(296) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.012601779773831367 and after 0.2077305018901825 +num_clicks 50 points_length: 1824 dynamic_size: 8 +filter out voxels: 23362 +filter out voxels: 253 +First batch: fn: 0.4490, fp: 6.9864, label 0: tensor(45), label 1: tensor(252) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.012861225754022598 and after 0.2749857008457184 +num_clicks 50 points_length: 1640 dynamic_size: 11 +filter out voxels: 22991 +filter out voxels: 255 +First batch: fn: 0.3633, fp: 6.8879, label 0: tensor(45), label 1: tensor(193) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.013215658254921436 and after 0.30481618642807007 +num_clicks 50 points_length: 1523 dynamic_size: 25 +filter out voxels: 22850 +filter out voxels: 229 +First batch: fn: 0.3117, fp: 6.8702, label 0: tensor(68), label 1: tensor(234) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.013525575399398804 and after 0.33746713399887085 +num_clicks 50 points_length: 1420 dynamic_size: 23 +filter out voxels: 22673 +filter out voxels: 216 +First batch: fn: 0.2726, fp: 6.8276, label 0: tensor(194), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.013333969749510288 and after 0.3580508828163147 +num_clicks 50 points_length: 1373 dynamic_size: 19 +filter out voxels: 21746 +filter out voxels: 219 +First batch: fn: 0.2723, fp: 6.4664, label 0: tensor(35), label 1: tensor(221) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.013588929548859596 and after 0.36773598194122314 +num_clicks 50 points_length: 1324 dynamic_size: 42 +filter out voxels: 22402 +filter out voxels: 197 +First batch: fn: 0.2257, fp: 6.6990, label 0: tensor(226), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.013387830927968025 and after 0.38748568296432495 +num_clicks 50 points_length: 1271 dynamic_size: 9 +filter out voxels: 20849 +filter out voxels: 193 +First batch: fn: 0.2497, fp: 6.1732, label 0: tensor(74), label 1: tensor(209) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0137759605422616 and after 0.3915921151638031 +num_clicks 50 points_length: 1222 dynamic_size: 16 +filter out voxels: 21665 +filter out voxels: 167 +First batch: fn: 0.2239, fp: 6.4409, label 0: tensor(96), label 1: tensor(193) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.013809110969305038 and after 0.4001734256744385 +epoch: 2/20, iter: 13/42: loss:4.0467: rank:-1 +[22:05:19.871] epoch: 2/20, iter: 13/42: loss:4.0467: rank:-1 +num_clicks 50 points_length: 1706 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00017721070616971701 and after 0.08375365287065506 +num_clicks 50 points_length: 3893 dynamic_size: 15 +filter out voxels: 3837 +filter out voxels: 0 +First batch: fn: 0.8992, fp: 2.2491, label 0: tensor(8), label 1: tensor(246) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 8.930431795306504e-05 and after 0.2512381076812744 +num_clicks 50 points_length: 3560 dynamic_size: 41 +filter out voxels: 3982 +filter out voxels: 0 +First batch: fn: 0.6084, fp: 2.3435, label 0: tensor(49), label 1: tensor(304) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00010074551391880959 and after 0.3415348529815674 +num_clicks 50 points_length: 3094 dynamic_size: 37 +filter out voxels: 3992 +filter out voxels: 0 +First batch: fn: 0.3951, fp: 2.3669, label 0: tensor(46), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00014975888188928366 and after 0.3796387314796448 +num_clicks 50 points_length: 2996 dynamic_size: 19 +filter out voxels: 3753 +filter out voxels: 0 +First batch: fn: 0.3634, fp: 2.2374, label 0: tensor(41), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00013061650679446757 and after 0.4223204255104065 +num_clicks 50 points_length: 2800 dynamic_size: 3 +filter out voxels: 3724 +filter out voxels: 0 +First batch: fn: 0.3247, fp: 2.2292, label 0: tensor(31), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00023252723622135818 and after 0.4540340304374695 +num_clicks 50 points_length: 2655 dynamic_size: 18 +filter out voxels: 3659 +filter out voxels: 0 +First batch: fn: 0.2984, fp: 2.1999, label 0: tensor(40), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00020112631318625063 and after 0.48001179099082947 +num_clicks 50 points_length: 2517 dynamic_size: 41 +filter out voxels: 3641 +filter out voxels: 0 +First batch: fn: 0.2702, fp: 2.1905, label 0: tensor(79), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 6.877106352476403e-05 and after 0.5066688656806946 +num_clicks 50 points_length: 2343 dynamic_size: 14 +filter out voxels: 3301 +filter out voxels: 0 +First batch: fn: 0.2679, fp: 1.9889, label 0: tensor(49), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00010020709305536002 and after 0.520980715751648 +num_clicks 50 points_length: 2266 dynamic_size: 47 +filter out voxels: 3258 +filter out voxels: 0 +First batch: fn: 0.2573, fp: 1.9660, label 0: tensor(83), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 6.933129770914093e-05 and after 0.5432093739509583 +num_clicks 50 points_length: 2111 dynamic_size: 25 +filter out voxels: 3029 +filter out voxels: 0 +First batch: fn: 0.2538, fp: 1.8341, label 0: tensor(57), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0001012111606542021 and after 0.5503100156784058 +epoch: 2/20, iter: 14/42: loss:3.971: rank:-1 +[22:05:31.704] epoch: 2/20, iter: 14/42: loss:3.971: rank:-1 +num_clicks 50 points_length: 9094 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14729784429073334 and after 0.11269351094961166 +num_clicks 50 points_length: 34221 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 17763 +First batch: fn: 0.8561, fp: 0.4014, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13193245232105255 and after 0.15802420675754547 +num_clicks 50 points_length: 34542 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 19257 +First batch: fn: 0.8441, fp: 0.4648, label 0: tensor(513), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13354039192199707 and after 0.20390206575393677 +num_clicks 50 points_length: 33262 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 19602 +First batch: fn: 0.8268, fp: 0.4682, label 0: tensor(501), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13480009138584137 and after 0.248496413230896 +num_clicks 50 points_length: 31606 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 19498 +First batch: fn: 0.8036, fp: 0.4590, label 0: tensor(506), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1368887573480606 and after 0.27842259407043457 +num_clicks 50 points_length: 30720 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 19553 +First batch: fn: 0.7841, fp: 0.4656, label 0: tensor(497), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13743574917316437 and after 0.303842693567276 +num_clicks 50 points_length: 29589 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 19249 +First batch: fn: 0.7676, fp: 0.4656, label 0: tensor(303), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13874055445194244 and after 0.3174281418323517 +num_clicks 50 points_length: 28862 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 18860 +First batch: fn: 0.7552, fp: 0.4705, label 0: tensor(257), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1386985182762146 and after 0.3316200077533722 +num_clicks 50 points_length: 28305 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 18593 +First batch: fn: 0.7406, fp: 0.4618, label 0: tensor(263), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13985759019851685 and after 0.3391443192958832 +num_clicks 50 points_length: 28052 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 18495 +First batch: fn: 0.7305, fp: 0.4731, label 0: tensor(221), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14065317809581757 and after 0.3493077754974365 +num_clicks 50 points_length: 27883 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 18401 +First batch: fn: 0.7123, fp: 0.4743, label 0: tensor(130), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1423461139202118 and after 0.35559195280075073 +epoch: 2/20, iter: 15/42: loss:3.827: rank:-1 +[22:05:56.109] epoch: 2/20, iter: 15/42: loss:3.827: rank:-1 +num_clicks 50 points_length: 522 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 7.801833271514624e-05 and after 0.0028490028344094753 +num_clicks 50 points_length: 5933 dynamic_size: 29 +filter out voxels: 76 +filter out voxels: 9399 +First batch: fn: 0.9971, fp: 0.0152, label 0: tensor(0), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 6.665111141046509e-05 and after 0.008291874080896378 +num_clicks 50 points_length: 5930 dynamic_size: 12 +filter out voxels: 93 +filter out voxels: 10740 +First batch: fn: 0.9915, fp: 0.0203, label 0: tensor(1), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00010149536683456972 and after 0.013423745520412922 +num_clicks 50 points_length: 5908 dynamic_size: 47 +filter out voxels: 86 +filter out voxels: 11350 +First batch: fn: 0.9881, fp: 0.0200, label 0: tensor(1), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00010016025771619752 and after 0.02882896363735199 +num_clicks 50 points_length: 5881 dynamic_size: 36 +filter out voxels: 84 +filter out voxels: 11382 +First batch: fn: 0.9838, fp: 0.0196, label 0: tensor(0), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002906976733356714 and after 0.059678640216588974 +num_clicks 50 points_length: 5754 dynamic_size: 42 +filter out voxels: 71 +filter out voxels: 11503 +First batch: fn: 0.9681, fp: 0.0136, label 0: tensor(1), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0002679797762539238 and after 0.07621142268180847 +num_clicks 50 points_length: 5710 dynamic_size: 45 +filter out voxels: 82 +filter out voxels: 10420 +First batch: fn: 0.9543, fp: 0.0200, label 0: tensor(0), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.00026662222808226943 and after 0.10976122319698334 +num_clicks 50 points_length: 5498 dynamic_size: 37 +filter out voxels: 80 +filter out voxels: 10911 +First batch: fn: 0.9188, fp: 0.0193, label 0: tensor(2), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0003673401370178908 and after 0.13092593848705292 +num_clicks 50 points_length: 5364 dynamic_size: 24 +filter out voxels: 78 +filter out voxels: 10093 +First batch: fn: 0.8964, fp: 0.0188, label 0: tensor(0), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004986205021850765 and after 0.1386445164680481 +num_clicks 50 points_length: 5308 dynamic_size: 29 +filter out voxels: 80 +filter out voxels: 10385 +First batch: fn: 0.8859, fp: 0.0198, label 0: tensor(0), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0005643153563141823 and after 0.15714801847934723 +num_clicks 50 points_length: 5172 dynamic_size: 27 +filter out voxels: 80 +filter out voxels: 10602 +First batch: fn: 0.8628, fp: 0.0196, label 0: tensor(2), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0004000400076620281 and after 0.1695243865251541 +epoch: 2/20, iter: 16/42: loss:4.246: rank:-1 +[22:06:05.363] epoch: 2/20, iter: 16/42: loss:4.246: rank:-1 +num_clicks 50 points_length: 8766 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(534) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07402992248535156 and after 0.23679164052009583 +num_clicks 50 points_length: 7661 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 394 +First batch: fn: 0.9819, fp: 0.2674, label 0: tensor(271), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07896540313959122 and after 0.299083948135376 +num_clicks 50 points_length: 7315 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 749 +First batch: fn: 0.9496, fp: 0.3289, label 0: tensor(405), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08221903443336487 and after 0.3584289252758026 +num_clicks 50 points_length: 6426 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 737 +First batch: fn: 0.9201, fp: 0.3218, label 0: tensor(285), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08238939940929413 and after 0.40757521986961365 +num_clicks 50 points_length: 5941 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 715 +First batch: fn: 0.8811, fp: 0.3132, label 0: tensor(289), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08275598287582397 and after 0.44408291578292847 +num_clicks 50 points_length: 5612 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 694 +First batch: fn: 0.8461, fp: 0.2959, label 0: tensor(248), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08256056904792786 and after 0.47239887714385986 +num_clicks 50 points_length: 5374 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 695 +First batch: fn: 0.8162, fp: 0.2883, label 0: tensor(243), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08302977681159973 and after 0.5038235783576965 +num_clicks 50 points_length: 5202 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 684 +First batch: fn: 0.7697, fp: 0.3080, label 0: tensor(163), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08354674279689789 and after 0.5291269421577454 +num_clicks 50 points_length: 5091 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 685 +First batch: fn: 0.7323, fp: 0.3031, label 0: tensor(261), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08367940783500671 and after 0.554316520690918 +num_clicks 50 points_length: 4961 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 677 +First batch: fn: 0.6907, fp: 0.3082, label 0: tensor(113), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08373404294252396 and after 0.5859906673431396 +num_clicks 50 points_length: 4889 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 672 +First batch: fn: 0.6291, fp: 0.3103, label 0: tensor(116), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08427046239376068 and after 0.6130560040473938 +epoch: 2/20, iter: 17/42: loss:3.6012: rank:-1 +[22:06:26.801] epoch: 2/20, iter: 17/42: loss:3.6012: rank:-1 +num_clicks 50 points_length: 32630 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5923740863800049 and after 0.337451696395874 +num_clicks 50 points_length: 53860 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7395, fp: 0.9111, label 0: tensor(15), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5813891291618347 and after 0.36373257637023926 +num_clicks 50 points_length: 58237 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6914, fp: 1.0933, label 0: tensor(32), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5798243284225464 and after 0.4020679295063019 +num_clicks 50 points_length: 56552 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6344, fp: 1.0987, label 0: tensor(67), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5810596942901611 and after 0.43257108330726624 +num_clicks 50 points_length: 55222 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5885, fp: 1.1039, label 0: tensor(85), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5797622203826904 and after 0.46006524562835693 +num_clicks 50 points_length: 53831 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5505, fp: 1.0992, label 0: tensor(113), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.578772783279419 and after 0.4787110984325409 +num_clicks 50 points_length: 52715 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5171, fp: 1.0985, label 0: tensor(125), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5796478986740112 and after 0.5017353296279907 +num_clicks 50 points_length: 51865 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4873, fp: 1.1022, label 0: tensor(136), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5792063474655151 and after 0.5169541835784912 +num_clicks 50 points_length: 51175 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4618, fp: 1.1065, label 0: tensor(113), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5808212161064148 and after 0.5410401821136475 +num_clicks 50 points_length: 50290 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4279, fp: 1.1134, label 0: tensor(148), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5832569599151611 and after 0.5605366230010986 +num_clicks 50 points_length: 49132 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3877, fp: 1.1181, label 0: tensor(170), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5827544927597046 and after 0.5761795043945312 +epoch: 2/20, iter: 18/42: loss:2.7122: rank:-1 +[22:06:46.807] epoch: 2/20, iter: 18/42: loss:2.7122: rank:-1 +num_clicks 50 points_length: 3005 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.027592714875936508 and after 0.03207661956548691 +num_clicks 50 points_length: 6156 dynamic_size: 36 +filter out voxels: 87844 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 29.2326, label 0: tensor(35), label 1: tensor(172) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.024622103199362755 and after 0.10894044488668442 +num_clicks 50 points_length: 5765 dynamic_size: 25 +filter out voxels: 117053 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 38.9527, label 0: tensor(24), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.026005888357758522 and after 0.13792644441127777 +num_clicks 50 points_length: 5642 dynamic_size: 41 +filter out voxels: 118964 +filter out voxels: 0 +First batch: fn: 0.9977, fp: 39.5887, label 0: tensor(41), label 1: tensor(229) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.028059925884008408 and after 0.23209978640079498 +num_clicks 50 points_length: 4781 dynamic_size: 36 +filter out voxels: 118875 +filter out voxels: 0 +First batch: fn: 0.9484, fp: 39.5657, label 0: tensor(44), label 1: tensor(461) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.030949542298913002 and after 0.339199036359787 +num_clicks 50 points_length: 3575 dynamic_size: 10 +filter out voxels: 127641 +filter out voxels: 0 +First batch: fn: 0.7461, fp: 42.4968, label 0: tensor(24), label 1: tensor(281) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03549399971961975 and after 0.37064844369888306 +num_clicks 50 points_length: 3216 dynamic_size: 42 +filter out voxels: 115556 +filter out voxels: 0 +First batch: fn: 0.6582, fp: 38.4932, label 0: tensor(67), label 1: tensor(363) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.034738536924123764 and after 0.39401641488075256 +num_clicks 50 points_length: 2877 dynamic_size: 15 +filter out voxels: 117537 +filter out voxels: 0 +First batch: fn: 0.5298, fp: 39.1717, label 0: tensor(56), label 1: tensor(313) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03538862243294716 and after 0.40258005261421204 +num_clicks 50 points_length: 2824 dynamic_size: 28 +filter out voxels: 117403 +filter out voxels: 0 +First batch: fn: 0.4156, fp: 39.1604, label 0: tensor(86), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03817097470164299 and after 0.40645378828048706 +num_clicks 50 points_length: 2812 dynamic_size: 7 +filter out voxels: 120590 +filter out voxels: 0 +First batch: fn: 0.3903, fp: 40.2206, label 0: tensor(70), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.037845589220523834 and after 0.41033488512039185 +num_clicks 50 points_length: 2741 dynamic_size: 41 +filter out voxels: 117692 +filter out voxels: 0 +First batch: fn: 0.3448, fp: 39.2719, label 0: tensor(111), label 1: tensor(194) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.038194309920072556 and after 0.4127984642982483 +epoch: 2/20, iter: 19/42: loss:4.0997: rank:-1 +[22:06:59.101] epoch: 2/20, iter: 19/42: loss:4.0997: rank:-1 +num_clicks 50 points_length: 22374 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(544) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44037356972694397 and after 0.41789475083351135 +num_clicks 50 points_length: 6407 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2713, fp: 0.0151, label 0: tensor(30), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43807825446128845 and after 0.439607173204422 +num_clicks 50 points_length: 4969 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1917, fp: 0.0304, label 0: tensor(61), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4383794665336609 and after 0.44971296191215515 +num_clicks 50 points_length: 4257 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1492, fp: 0.0410, label 0: tensor(56), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.437797486782074 and after 0.4592721462249756 +num_clicks 50 points_length: 3561 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1026, fp: 0.0565, label 0: tensor(131), label 1: tensor(430) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43893763422966003 and after 0.46440282464027405 +num_clicks 50 points_length: 3163 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0786, fp: 0.0628, label 0: tensor(113), label 1: tensor(474) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4382215738296509 and after 0.4688010513782501 +num_clicks 50 points_length: 2864 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0551, fp: 0.0729, label 0: tensor(269), label 1: tensor(319) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4409981369972229 and after 0.4714680314064026 +num_clicks 50 points_length: 2663 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0510, fp: 0.0680, label 0: tensor(217), label 1: tensor(316) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4401000142097473 and after 0.4730789065361023 +num_clicks 50 points_length: 2556 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0433, fp: 0.0709, label 0: tensor(244), label 1: tensor(357) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44020333886146545 and after 0.47404375672340393 +num_clicks 50 points_length: 2453 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0373, fp: 0.0723, label 0: tensor(294), label 1: tensor(284) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44074955582618713 and after 0.47568002343177795 +num_clicks 50 points_length: 2439 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0372, fp: 0.0718, label 0: tensor(284), label 1: tensor(298) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4408068060874939 and after 0.4827667772769928 +epoch: 2/20, iter: 20/42: loss:2.898: rank:-1 +[22:07:19.004] epoch: 2/20, iter: 20/42: loss:2.898: rank:-1 +num_clicks 50 points_length: 9081 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13150881230831146 and after 0.12867335975170135 +num_clicks 50 points_length: 8385 dynamic_size: 34 +filter out voxels: 6 +filter out voxels: 0 +First batch: fn: 0.9401, fp: 0.0004, label 0: tensor(2), label 1: tensor(534) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15614092350006104 and after 0.33573052287101746 +num_clicks 50 points_length: 7516 dynamic_size: 8 +filter out voxels: 9 +filter out voxels: 0 +First batch: fn: 0.7886, fp: 0.0008, label 0: tensor(7), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16732726991176605 and after 0.4874470829963684 +num_clicks 50 points_length: 6935 dynamic_size: 33 +filter out voxels: 3 +filter out voxels: 0 +First batch: fn: 0.6158, fp: 0.0013, label 0: tensor(6), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17374175786972046 and after 0.597506046295166 +num_clicks 50 points_length: 6551 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4633, fp: 0.0022, label 0: tensor(36), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17435021698474884 and after 0.6641325950622559 +num_clicks 50 points_length: 6222 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3515, fp: 0.0065, label 0: tensor(64), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17928911745548248 and after 0.7150141000747681 +num_clicks 50 points_length: 5833 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2758, fp: 0.0115, label 0: tensor(101), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18299545347690582 and after 0.7792194485664368 +num_clicks 50 points_length: 4666 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2101, fp: 0.0172, label 0: tensor(120), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21550099551677704 and after 0.8178259134292603 +num_clicks 50 points_length: 3526 dynamic_size: 19 +filter out voxels: 1 +filter out voxels: 0 +First batch: fn: 0.1409, fp: 0.0309, label 0: tensor(233), label 1: tensor(427) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2239740490913391 and after 0.8414629697799683 +num_clicks 50 points_length: 2939 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1063, fp: 0.0369, label 0: tensor(206), label 1: tensor(336) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23117616772651672 and after 0.8542463779449463 +num_clicks 50 points_length: 2626 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0821, fp: 0.0459, label 0: tensor(235), label 1: tensor(335) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2315988838672638 and after 0.8594337701797485 +epoch: 2/20, iter: 21/42: loss:2.7943: rank:-1 +[22:07:37.172] epoch: 2/20, iter: 21/42: loss:2.7943: rank:-1 +num_clicks 50 points_length: 73798 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17037515342235565 and after 0.042600203305482864 +num_clicks 50 points_length: 73714 dynamic_size: 34 +filter out voxels: 1843 +filter out voxels: 0 +First batch: fn: 0.9611, fp: 0.0378, label 0: tensor(16), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1449568271636963 and after 0.10413094609975815 +num_clicks 50 points_length: 68342 dynamic_size: 23 +filter out voxels: 2242 +filter out voxels: 0 +First batch: fn: 0.8854, fp: 0.0407, label 0: tensor(12), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16766062378883362 and after 0.11161737889051437 +num_clicks 50 points_length: 67929 dynamic_size: 34 +filter out voxels: 2061 +filter out voxels: 0 +First batch: fn: 0.8805, fp: 0.0399, label 0: tensor(21), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1654135286808014 and after 0.14838849008083344 +num_clicks 50 points_length: 64990 dynamic_size: 45 +filter out voxels: 2004 +filter out voxels: 0 +First batch: fn: 0.8422, fp: 0.0385, label 0: tensor(60), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16598761081695557 and after 0.1832870990037918 +num_clicks 50 points_length: 61203 dynamic_size: 30 +filter out voxels: 2128 +filter out voxels: 0 +First batch: fn: 0.7920, fp: 0.0373, label 0: tensor(42), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1796976923942566 and after 0.2082836776971817 +num_clicks 50 points_length: 58997 dynamic_size: 37 +filter out voxels: 1861 +filter out voxels: 0 +First batch: fn: 0.7662, fp: 0.0332, label 0: tensor(48), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1810980588197708 and after 0.23890358209609985 +num_clicks 50 points_length: 55696 dynamic_size: 21 +filter out voxels: 1771 +filter out voxels: 0 +First batch: fn: 0.7224, fp: 0.0323, label 0: tensor(71), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19032971560955048 and after 0.2601832151412964 +num_clicks 50 points_length: 53226 dynamic_size: 25 +filter out voxels: 1623 +filter out voxels: 0 +First batch: fn: 0.6918, fp: 0.0295, label 0: tensor(52), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18899881839752197 and after 0.2807832658290863 +num_clicks 50 points_length: 50694 dynamic_size: 14 +filter out voxels: 1606 +filter out voxels: 0 +First batch: fn: 0.6553, fp: 0.0316, label 0: tensor(60), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19443397223949432 and after 0.30449679493904114 +num_clicks 50 points_length: 47971 dynamic_size: 35 +filter out voxels: 1540 +filter out voxels: 0 +First batch: fn: 0.6189, fp: 0.0312, label 0: tensor(54), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19637978076934814 and after 0.31940722465515137 +epoch: 2/20, iter: 22/42: loss:4.4599: rank:-1 +[22:08:00.393] epoch: 2/20, iter: 22/42: loss:4.4599: rank:-1 +num_clicks 50 points_length: 4775 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5842654705047607 and after 0.1368236094713211 +num_clicks 50 points_length: 6112 dynamic_size: 1 +filter out voxels: 564 +filter out voxels: 2017 +First batch: fn: 0.9512, fp: 0.0163, label 0: tensor(0), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5603222846984863 and after 0.35411903262138367 +num_clicks 50 points_length: 4506 dynamic_size: 3 +filter out voxels: 725 +filter out voxels: 2261 +First batch: fn: 0.9212, fp: 0.0237, label 0: tensor(0), label 1: tensor(234) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5817740559577942 and after 0.39175945520401 +num_clicks 50 points_length: 3832 dynamic_size: 9 +filter out voxels: 834 +filter out voxels: 1900 +First batch: fn: 0.9137, fp: 0.0253, label 0: tensor(0), label 1: tensor(316) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5805243849754333 and after 0.4353148639202118 +num_clicks 50 points_length: 3437 dynamic_size: 40 +filter out voxels: 790 +filter out voxels: 1939 +First batch: fn: 0.8984, fp: 0.0260, label 0: tensor(0), label 1: tensor(321) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5886895060539246 and after 0.46901294589042664 +num_clicks 50 points_length: 2942 dynamic_size: 10 +filter out voxels: 860 +filter out voxels: 1727 +First batch: fn: 0.8881, fp: 0.0300, label 0: tensor(1), label 1: tensor(238) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5938706398010254 and after 0.4908795654773712 +num_clicks 50 points_length: 2634 dynamic_size: 4 +filter out voxels: 817 +filter out voxels: 1573 +First batch: fn: 0.8787, fp: 0.0269, label 0: tensor(0), label 1: tensor(243) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5942235589027405 and after 0.5072617530822754 +num_clicks 50 points_length: 2539 dynamic_size: 43 +filter out voxels: 792 +filter out voxels: 1551 +First batch: fn: 0.8660, fp: 0.0260, label 0: tensor(1), label 1: tensor(298) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6001279354095459 and after 0.5208699107170105 +num_clicks 50 points_length: 2210 dynamic_size: 18 +filter out voxels: 753 +filter out voxels: 1294 +First batch: fn: 0.8627, fp: 0.0264, label 0: tensor(1), label 1: tensor(240) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6021782159805298 and after 0.5351027250289917 +num_clicks 50 points_length: 2020 dynamic_size: 6 +filter out voxels: 766 +filter out voxels: 1158 +First batch: fn: 0.8528, fp: 0.0269, label 0: tensor(0), label 1: tensor(268) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6023015379905701 and after 0.5476359128952026 +num_clicks 50 points_length: 1959 dynamic_size: 33 +filter out voxels: 699 +filter out voxels: 1117 +First batch: fn: 0.8387, fp: 0.0241, label 0: tensor(0), label 1: tensor(270) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6035967469215393 and after 0.5445408225059509 +epoch: 2/20, iter: 23/42: loss:2.5199: rank:-1 +[22:08:14.678] epoch: 2/20, iter: 23/42: loss:2.5199: rank:-1 +num_clicks 50 points_length: 1951 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(172) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1489122211933136 and after 0.15715084969997406 +num_clicks 50 points_length: 2019 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 334 +First batch: fn: 0.9620, fp: 0.0114, label 0: tensor(0), label 1: tensor(260) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14139577746391296 and after 0.272287517786026 +num_clicks 50 points_length: 2125 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 249 +First batch: fn: 0.9218, fp: 0.0149, label 0: tensor(0), label 1: tensor(265) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1458199918270111 and after 0.3730621337890625 +num_clicks 50 points_length: 1792 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 202 +First batch: fn: 0.8446, fp: 0.0149, label 0: tensor(1), label 1: tensor(239) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15399716794490814 and after 0.44736361503601074 +num_clicks 50 points_length: 1611 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 203 +First batch: fn: 0.7935, fp: 0.0200, label 0: tensor(0), label 1: tensor(248) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1495053917169571 and after 0.5208965539932251 +num_clicks 50 points_length: 1392 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 207 +First batch: fn: 0.7315, fp: 0.0150, label 0: tensor(0), label 1: tensor(308) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15452180802822113 and after 0.588302493095398 +num_clicks 50 points_length: 1177 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 192 +First batch: fn: 0.6771, fp: 0.0241, label 0: tensor(1), label 1: tensor(285) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15468721091747284 and after 0.6444720029830933 +num_clicks 50 points_length: 1046 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 195 +First batch: fn: 0.6038, fp: 0.0254, label 0: tensor(0), label 1: tensor(297) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16147522628307343 and after 0.685831606388092 +num_clicks 50 points_length: 960 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 191 +First batch: fn: 0.5428, fp: 0.0356, label 0: tensor(2), label 1: tensor(301) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15552623569965363 and after 0.7117666006088257 +num_clicks 50 points_length: 882 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 192 +First batch: fn: 0.5060, fp: 0.0387, label 0: tensor(3), label 1: tensor(308) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15457189083099365 and after 0.7321789860725403 +num_clicks 50 points_length: 855 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 192 +First batch: fn: 0.4640, fp: 0.0455, label 0: tensor(0), label 1: tensor(255) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16385520994663239 and after 0.7505468130111694 +epoch: 2/20, iter: 24/42: loss:3.1098: rank:-1 +[22:08:28.006] epoch: 2/20, iter: 24/42: loss:3.1098: rank:-1 +num_clicks 50 points_length: 1429 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(233) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17193350195884705 and after 0.17450204491615295 +num_clicks 50 points_length: 2085 dynamic_size: 44 +filter out voxels: 769 +filter out voxels: 8619 +First batch: fn: 0.6375, fp: 0.8216, label 0: tensor(150), label 1: tensor(209) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17949727177619934 and after 0.3187456429004669 +num_clicks 50 points_length: 1574 dynamic_size: 43 +filter out voxels: 551 +filter out voxels: 12004 +First batch: fn: 0.3653, fp: 0.7362, label 0: tensor(247), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.181971937417984 and after 0.4123965799808502 +num_clicks 50 points_length: 1321 dynamic_size: 17 +filter out voxels: 441 +filter out voxels: 12272 +First batch: fn: 0.2946, fp: 0.6298, label 0: tensor(184), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18232795596122742 and after 0.4462227523326874 +num_clicks 50 points_length: 1333 dynamic_size: 36 +filter out voxels: 459 +filter out voxels: 12770 +First batch: fn: 0.2617, fp: 0.6711, label 0: tensor(210), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18183094263076782 and after 0.487136572599411 +num_clicks 50 points_length: 1173 dynamic_size: 27 +filter out voxels: 374 +filter out voxels: 13039 +First batch: fn: 0.2715, fp: 0.5493, label 0: tensor(164), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18480247259140015 and after 0.5033930540084839 +num_clicks 50 points_length: 1217 dynamic_size: 14 +filter out voxels: 402 +filter out voxels: 12905 +First batch: fn: 0.2652, fp: 0.5864, label 0: tensor(145), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18602849543094635 and after 0.5232457518577576 +num_clicks 50 points_length: 1172 dynamic_size: 48 +filter out voxels: 377 +filter out voxels: 12648 +First batch: fn: 0.2561, fp: 0.5640, label 0: tensor(179), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18392065167427063 and after 0.5401734709739685 +num_clicks 50 points_length: 1162 dynamic_size: 39 +filter out voxels: 351 +filter out voxels: 12686 +First batch: fn: 0.2351, fp: 0.5780, label 0: tensor(169), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18556569516658783 and after 0.5613734126091003 +num_clicks 50 points_length: 1101 dynamic_size: 27 +filter out voxels: 318 +filter out voxels: 12633 +First batch: fn: 0.2365, fp: 0.5339, label 0: tensor(176), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1860947459936142 and after 0.5803107023239136 +num_clicks 50 points_length: 1065 dynamic_size: 40 +filter out voxels: 290 +filter out voxels: 12602 +First batch: fn: 0.2344, fp: 0.5108, label 0: tensor(194), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18566268682479858 and after 0.5972782373428345 +epoch: 2/20, iter: 25/42: loss:3.2056: rank:-1 +[22:08:42.067] epoch: 2/20, iter: 25/42: loss:3.2056: rank:-1 +num_clicks 50 points_length: 38582 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3429926633834839 and after 0.08575957268476486 +num_clicks 50 points_length: 36206 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9383, fp: 0.0002, label 0: tensor(6), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3710751533508301 and after 0.1478947401046753 +num_clicks 50 points_length: 33684 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8727, fp: 0.0003, label 0: tensor(8), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3886716961860657 and after 0.21430066227912903 +num_clicks 50 points_length: 31293 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8093, fp: 0.0018, label 0: tensor(32), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3914564847946167 and after 0.2877468466758728 +num_clicks 50 points_length: 27886 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7195, fp: 0.0033, label 0: tensor(43), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39261341094970703 and after 0.33532193303108215 +num_clicks 50 points_length: 25379 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6538, fp: 0.0040, label 0: tensor(41), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40373221039772034 and after 0.40056777000427246 +num_clicks 50 points_length: 22678 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5812, fp: 0.0066, label 0: tensor(40), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4234550893306732 and after 0.46730560064315796 +num_clicks 50 points_length: 18527 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4728, fp: 0.0074, label 0: tensor(34), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44792085886001587 and after 0.5148509740829468 +num_clicks 50 points_length: 16992 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4297, fp: 0.0108, label 0: tensor(38), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46137237548828125 and after 0.5479329824447632 +num_clicks 50 points_length: 15388 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3826, fp: 0.0162, label 0: tensor(47), label 1: tensor(544) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4685116410255432 and after 0.5886996984481812 +num_clicks 50 points_length: 13071 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3181, fp: 0.0207, label 0: tensor(114), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47512465715408325 and after 0.6100221276283264 +epoch: 2/20, iter: 26/42: loss:2.5794: rank:-1 +[22:09:00.618] epoch: 2/20, iter: 26/42: loss:2.5794: rank:-1 +num_clicks 50 points_length: 6967 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18999788165092468 and after 0.3040526509284973 +num_clicks 50 points_length: 6507 dynamic_size: 32 +filter out voxels: 347 +filter out voxels: 0 +First batch: fn: 0.6046, fp: 0.3294, label 0: tensor(122), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2179349958896637 and after 0.3811812996864319 +num_clicks 50 points_length: 5723 dynamic_size: 9 +filter out voxels: 296 +filter out voxels: 0 +First batch: fn: 0.4086, fp: 0.4128, label 0: tensor(92), label 1: tensor(482) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22483640909194946 and after 0.4242973029613495 +num_clicks 50 points_length: 5296 dynamic_size: 1 +filter out voxels: 260 +filter out voxels: 0 +First batch: fn: 0.2932, fp: 0.4669, label 0: tensor(244), label 1: tensor(323) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23026135563850403 and after 0.4552559554576874 +num_clicks 50 points_length: 5067 dynamic_size: 20 +filter out voxels: 234 +filter out voxels: 0 +First batch: fn: 0.2437, fp: 0.4836, label 0: tensor(373), label 1: tensor(321) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2344878613948822 and after 0.47181153297424316 +num_clicks 50 points_length: 4712 dynamic_size: 5 +filter out voxels: 229 +filter out voxels: 0 +First batch: fn: 0.2169, fp: 0.4595, label 0: tensor(236), label 1: tensor(363) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23934133350849152 and after 0.48838481307029724 +num_clicks 50 points_length: 4756 dynamic_size: 22 +filter out voxels: 238 +filter out voxels: 0 +First batch: fn: 0.1629, fp: 0.5197, label 0: tensor(406), label 1: tensor(227) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23972144722938538 and after 0.5039074420928955 +num_clicks 50 points_length: 4187 dynamic_size: 18 +filter out voxels: 196 +filter out voxels: 0 +First batch: fn: 0.1625, fp: 0.4385, label 0: tensor(329), label 1: tensor(281) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2410673201084137 and after 0.5178497433662415 +num_clicks 50 points_length: 4079 dynamic_size: 29 +filter out voxels: 198 +filter out voxels: 0 +First batch: fn: 0.1453, fp: 0.4402, label 0: tensor(461), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24476003646850586 and after 0.5333811044692993 +num_clicks 50 points_length: 3716 dynamic_size: 23 +filter out voxels: 165 +filter out voxels: 0 +First batch: fn: 0.1589, fp: 0.3745, label 0: tensor(354), label 1: tensor(269) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2464410960674286 and after 0.543327271938324 +num_clicks 50 points_length: 3700 dynamic_size: 50 +filter out voxels: 189 +filter out voxels: 0 +First batch: fn: 0.1432, fp: 0.3878, label 0: tensor(415), label 1: tensor(197) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24661961197853088 and after 0.554956316947937 +epoch: 2/20, iter: 27/42: loss:3.3894: rank:-1 +[22:09:21.467] epoch: 2/20, iter: 27/42: loss:3.3894: rank:-1 +num_clicks 50 points_length: 154 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22641320526599884 and after 0.09465906023979187 +num_clicks 50 points_length: 3105 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 2970 +First batch: fn: 0.9225, fp: 0.0267, label 0: tensor(0), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2326502948999405 and after 0.10413409024477005 +num_clicks 50 points_length: 2997 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 2865 +First batch: fn: 0.9148, fp: 0.0301, label 0: tensor(1), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23311810195446014 and after 0.11499661952257156 +num_clicks 50 points_length: 2963 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 2826 +First batch: fn: 0.9110, fp: 0.0295, label 0: tensor(0), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2337503880262375 and after 0.12030671536922455 +num_clicks 50 points_length: 2799 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 2694 +First batch: fn: 0.9060, fp: 0.0305, label 0: tensor(1), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23382633924484253 and after 0.12589488923549652 +num_clicks 50 points_length: 2803 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 2687 +First batch: fn: 0.9020, fp: 0.0310, label 0: tensor(0), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2336077094078064 and after 0.12331897020339966 +num_clicks 50 points_length: 2860 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 2747 +First batch: fn: 0.9037, fp: 0.0302, label 0: tensor(1), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23434443771839142 and after 0.1270652562379837 +num_clicks 50 points_length: 2838 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 2719 +First batch: fn: 0.8997, fp: 0.0308, label 0: tensor(0), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23458856344223022 and after 0.12674017250537872 +num_clicks 50 points_length: 2836 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 2715 +First batch: fn: 0.9000, fp: 0.0320, label 0: tensor(2), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2345324456691742 and after 0.1324893683195114 +num_clicks 50 points_length: 2626 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 2514 +First batch: fn: 0.8956, fp: 0.0315, label 0: tensor(2), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23451146483421326 and after 0.13762801885604858 +num_clicks 50 points_length: 2662 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 2541 +First batch: fn: 0.8895, fp: 0.0336, label 0: tensor(0), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23476549983024597 and after 0.1376124918460846 +epoch: 2/20, iter: 28/42: loss:3.3814: rank:-1 +[22:09:31.165] epoch: 2/20, iter: 28/42: loss:3.3814: rank:-1 +num_clicks 50 points_length: 261 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13990448415279388 and after 0.30788344144821167 +num_clicks 50 points_length: 744 dynamic_size: 16 +filter out voxels: 232 +filter out voxels: 11968 +First batch: fn: 0.4922, fp: 0.2373, label 0: tensor(12), label 1: tensor(138) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1432621031999588 and after 0.3960629105567932 +num_clicks 50 points_length: 540 dynamic_size: 49 +filter out voxels: 238 +filter out voxels: 11431 +First batch: fn: 0.1765, fp: 0.3529, label 0: tensor(81), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.153459370136261 and after 0.40468889474868774 +num_clicks 50 points_length: 556 dynamic_size: 29 +filter out voxels: 255 +filter out voxels: 10453 +First batch: fn: 0.0755, fp: 0.4696, label 0: tensor(88), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16709275543689728 and after 0.40975233912467957 +num_clicks 50 points_length: 528 dynamic_size: 3 +filter out voxels: 251 +filter out voxels: 10772 +First batch: fn: 0.0725, fp: 0.4451, label 0: tensor(24), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15674924850463867 and after 0.4094051122665405 +num_clicks 50 points_length: 540 dynamic_size: 14 +filter out voxels: 252 +filter out voxels: 11104 +First batch: fn: 0.0569, fp: 0.4725, label 0: tensor(85), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16708150506019592 and after 0.41530317068099976 +num_clicks 50 points_length: 509 dynamic_size: 5 +filter out voxels: 256 +filter out voxels: 10062 +First batch: fn: 0.0588, fp: 0.4402, label 0: tensor(24), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.154435396194458 and after 0.4143257737159729 +num_clicks 50 points_length: 509 dynamic_size: 24 +filter out voxels: 249 +filter out voxels: 10523 +First batch: fn: 0.0569, fp: 0.4422, label 0: tensor(51), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15980683267116547 and after 0.4139285087585449 +num_clicks 50 points_length: 512 dynamic_size: 24 +filter out voxels: 259 +filter out voxels: 10727 +First batch: fn: 0.0588, fp: 0.4431, label 0: tensor(43), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15779711306095123 and after 0.41597825288772583 +num_clicks 50 points_length: 502 dynamic_size: 31 +filter out voxels: 247 +filter out voxels: 10572 +First batch: fn: 0.0549, fp: 0.4373, label 0: tensor(51), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1581394523382187 and after 0.41904065012931824 +num_clicks 50 points_length: 490 dynamic_size: 10 +filter out voxels: 244 +filter out voxels: 10112 +First batch: fn: 0.0569, fp: 0.4235, label 0: tensor(45), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1612778902053833 and after 0.4208758771419525 +epoch: 2/20, iter: 29/42: loss:3.792: rank:-1 +[22:09:40.620] epoch: 2/20, iter: 29/42: loss:3.792: rank:-1 +num_clicks 50 points_length: 12342 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(431) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6605362296104431 and after 0.5067853927612305 +num_clicks 50 points_length: 4459 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8726, fp: 0.0001, label 0: tensor(4), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6646742820739746 and after 0.5539567470550537 +num_clicks 50 points_length: 3368 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8544, fp: 0.0001, label 0: tensor(7), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6664860248565674 and after 0.585061252117157 +num_clicks 50 points_length: 2713 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8389, fp: 0.0008, label 0: tensor(42), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6722342371940613 and after 0.6045182347297668 +num_clicks 50 points_length: 2165 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8280, fp: 0.0011, label 0: tensor(0), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6736682057380676 and after 0.620334804058075 +num_clicks 50 points_length: 1885 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8135, fp: 0.0023, label 0: tensor(0), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6747764348983765 and after 0.6255213022232056 +num_clicks 50 points_length: 1703 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8111, fp: 0.0023, label 0: tensor(0), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6741156578063965 and after 0.628804087638855 +num_clicks 50 points_length: 1615 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8087, fp: 0.0022, label 0: tensor(54), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6732969880104065 and after 0.6380487680435181 +num_clicks 50 points_length: 1535 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7976, fp: 0.0018, label 0: tensor(0), label 1: tensor(487) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6765319108963013 and after 0.6414437294006348 +num_clicks 50 points_length: 1491 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7939, fp: 0.0019, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6756030321121216 and after 0.6499625444412231 +num_clicks 50 points_length: 1475 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7818, fp: 0.0016, label 0: tensor(0), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6759868860244751 and after 0.6607213616371155 +epoch: 2/20, iter: 30/42: loss:2.4286: rank:-1 +[22:09:59.028] epoch: 2/20, iter: 30/42: loss:2.4286: rank:-1 +num_clicks 50 points_length: 6825 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4894542396068573 and after 0.5968115329742432 +num_clicks 50 points_length: 5238 dynamic_size: 48 +filter out voxels: 165 +filter out voxels: 6841 +First batch: fn: 0.3468, fp: 0.0651, label 0: tensor(206), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5002854466438293 and after 0.6973683834075928 +num_clicks 50 points_length: 3894 dynamic_size: 39 +filter out voxels: 190 +filter out voxels: 6218 +First batch: fn: 0.1785, fp: 0.1277, label 0: tensor(223), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5122311115264893 and after 0.7463852763175964 +num_clicks 50 points_length: 2876 dynamic_size: 43 +filter out voxels: 169 +filter out voxels: 5291 +First batch: fn: 0.0729, fp: 0.1533, label 0: tensor(280), label 1: tensor(329) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5191231369972229 and after 0.756926417350769 +num_clicks 50 points_length: 2671 dynamic_size: 29 +filter out voxels: 135 +filter out voxels: 5112 +First batch: fn: 0.0330, fp: 0.1770, label 0: tensor(422), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5209787487983704 and after 0.7654424905776978 +num_clicks 50 points_length: 2378 dynamic_size: 28 +filter out voxels: 114 +filter out voxels: 5108 +First batch: fn: 0.0279, fp: 0.1591, label 0: tensor(324), label 1: tensor(161) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5202484130859375 and after 0.7662442922592163 +num_clicks 50 points_length: 2206 dynamic_size: 47 +filter out voxels: 114 +filter out voxels: 5287 +First batch: fn: 0.0233, fp: 0.1502, label 0: tensor(408), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5205293893814087 and after 0.7696568965911865 +num_clicks 50 points_length: 2077 dynamic_size: 33 +filter out voxels: 110 +filter out voxels: 5275 +First batch: fn: 0.0250, fp: 0.1383, label 0: tensor(392), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5191650390625 and after 0.7749584913253784 +num_clicks 50 points_length: 1842 dynamic_size: 25 +filter out voxels: 84 +filter out voxels: 5287 +First batch: fn: 0.0289, fp: 0.1160, label 0: tensor(365), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5188782215118408 and after 0.7757257223129272 +num_clicks 50 points_length: 1862 dynamic_size: 27 +filter out voxels: 106 +filter out voxels: 5249 +First batch: fn: 0.0272, fp: 0.1192, label 0: tensor(359), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5188478231430054 and after 0.7779288291931152 +num_clicks 50 points_length: 1782 dynamic_size: 8 +filter out voxels: 108 +filter out voxels: 5229 +First batch: fn: 0.0279, fp: 0.1122, label 0: tensor(395), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5188025236129761 and after 0.7834471464157104 +epoch: 2/20, iter: 31/42: loss:2.0008: rank:-1 +[22:10:17.427] epoch: 2/20, iter: 31/42: loss:2.0008: rank:-1 +num_clicks 50 points_length: 1405 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0442434623837471 and after 0.016985293477773666 +num_clicks 50 points_length: 7120 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 3502 +First batch: fn: 0.9941, fp: 0.0001, label 0: tensor(0), label 1: tensor(428) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04586628079414368 and after 0.13568469882011414 +num_clicks 50 points_length: 3932 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 717 +First batch: fn: 0.9922, fp: 0.0001, label 0: tensor(0), label 1: tensor(397) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.053839970380067825 and after 0.1826382428407669 +num_clicks 50 points_length: 3772 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 637 +First batch: fn: 0.9887, fp: 0.0001, label 0: tensor(0), label 1: tensor(386) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.061392784118652344 and after 0.2039148211479187 +num_clicks 50 points_length: 3528 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 618 +First batch: fn: 0.9825, fp: 0.0002, label 0: tensor(0), label 1: tensor(315) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05948242172598839 and after 0.22545893490314484 +num_clicks 50 points_length: 3479 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 630 +First batch: fn: 0.9803, fp: 0.0002, label 0: tensor(0), label 1: tensor(422) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.061495013535022736 and after 0.23629212379455566 +num_clicks 50 points_length: 3386 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 632 +First batch: fn: 0.9794, fp: 0.0002, label 0: tensor(0), label 1: tensor(324) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06662102788686752 and after 0.24200643599033356 +num_clicks 50 points_length: 3290 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 632 +First batch: fn: 0.9782, fp: 0.0002, label 0: tensor(0), label 1: tensor(377) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06723055243492126 and after 0.24763044714927673 +num_clicks 50 points_length: 3223 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 616 +First batch: fn: 0.9750, fp: 0.0002, label 0: tensor(0), label 1: tensor(442) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06739821285009384 and after 0.25214940309524536 +num_clicks 50 points_length: 3188 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 624 +First batch: fn: 0.9718, fp: 0.0002, label 0: tensor(0), label 1: tensor(238) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06236922740936279 and after 0.2509380877017975 +num_clicks 50 points_length: 3222 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 617 +First batch: fn: 0.9710, fp: 0.0002, label 0: tensor(0), label 1: tensor(356) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06699325144290924 and after 0.2560299336910248 +epoch: 2/20, iter: 32/42: loss:4.6954: rank:-1 +[22:10:35.262] epoch: 2/20, iter: 32/42: loss:4.6954: rank:-1 +num_clicks 50 points_length: 6039 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(203) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5427615642547607 and after 0.543762743473053 +num_clicks 50 points_length: 4135 dynamic_size: 39 +filter out voxels: 1 +filter out voxels: 982 +First batch: fn: 0.6970, fp: 0.0086, label 0: tensor(82), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6112266778945923 and after 0.7035197615623474 +num_clicks 50 points_length: 3121 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 703 +First batch: fn: 0.5398, fp: 0.0106, label 0: tensor(1), label 1: tensor(496) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6619483828544617 and after 0.7649891376495361 +num_clicks 50 points_length: 2795 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 496 +First batch: fn: 0.4240, fp: 0.0191, label 0: tensor(3), label 1: tensor(455) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6808682084083557 and after 0.8078609704971313 +num_clicks 50 points_length: 2145 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 390 +First batch: fn: 0.3568, fp: 0.0291, label 0: tensor(2), label 1: tensor(389) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6883004903793335 and after 0.8384501934051514 +num_clicks 50 points_length: 1777 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 387 +First batch: fn: 0.2985, fp: 0.0361, label 0: tensor(3), label 1: tensor(334) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6979028582572937 and after 0.8550121784210205 +num_clicks 50 points_length: 1675 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 399 +First batch: fn: 0.2537, fp: 0.0429, label 0: tensor(8), label 1: tensor(226) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6979309320449829 and after 0.8636482954025269 +num_clicks 50 points_length: 1631 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 432 +First batch: fn: 0.2263, fp: 0.0499, label 0: tensor(8), label 1: tensor(344) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7052837610244751 and after 0.8752549886703491 +num_clicks 50 points_length: 1507 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 365 +First batch: fn: 0.1911, fp: 0.0637, label 0: tensor(0), label 1: tensor(252) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7039430141448975 and after 0.883013129234314 +num_clicks 50 points_length: 1480 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 385 +First batch: fn: 0.1640, fp: 0.0688, label 0: tensor(16), label 1: tensor(223) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.704600989818573 and after 0.8884866237640381 +num_clicks 50 points_length: 1461 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 365 +First batch: fn: 0.1417, fp: 0.0762, label 0: tensor(12), label 1: tensor(271) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7020663619041443 and after 0.8955585956573486 +epoch: 2/20, iter: 33/42: loss:1.6506: rank:-1 +[22:10:50.315] epoch: 2/20, iter: 33/42: loss:1.6506: rank:-1 +num_clicks 50 points_length: 4956 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(308) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.30823302268981934 and after 0.5696495175361633 +num_clicks 50 points_length: 3685 dynamic_size: 47 +filter out voxels: 246 +filter out voxels: 3143 +First batch: fn: 0.6689, fp: 0.0747, label 0: tensor(49), label 1: tensor(370) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37110984325408936 and after 0.7944890260696411 +num_clicks 50 points_length: 1786 dynamic_size: 47 +filter out voxels: 206 +filter out voxels: 2646 +First batch: fn: 0.2286, fp: 0.1318, label 0: tensor(104), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41871142387390137 and after 0.831023633480072 +num_clicks 50 points_length: 1421 dynamic_size: 14 +filter out voxels: 109 +filter out voxels: 2339 +First batch: fn: 0.1128, fp: 0.1739, label 0: tensor(174), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4284366965293884 and after 0.8424786925315857 +num_clicks 50 points_length: 1252 dynamic_size: 23 +filter out voxels: 87 +filter out voxels: 2228 +First batch: fn: 0.0813, fp: 0.1713, label 0: tensor(135), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4390982389450073 and after 0.8464312553405762 +num_clicks 50 points_length: 1236 dynamic_size: 26 +filter out voxels: 96 +filter out voxels: 2156 +First batch: fn: 0.0559, fp: 0.1935, label 0: tensor(174), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4345562756061554 and after 0.8521135449409485 +num_clicks 50 points_length: 1145 dynamic_size: 31 +filter out voxels: 78 +filter out voxels: 2159 +First batch: fn: 0.0567, fp: 0.1743, label 0: tensor(149), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43327540159225464 and after 0.856704831123352 +num_clicks 50 points_length: 1097 dynamic_size: 39 +filter out voxels: 68 +filter out voxels: 2070 +First batch: fn: 0.0551, fp: 0.1663, label 0: tensor(156), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43354538083076477 and after 0.8603665828704834 +num_clicks 50 points_length: 1084 dynamic_size: 28 +filter out voxels: 74 +filter out voxels: 2028 +First batch: fn: 0.0553, fp: 0.1634, label 0: tensor(165), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43141210079193115 and after 0.8639560341835022 +num_clicks 50 points_length: 1057 dynamic_size: 19 +filter out voxels: 57 +filter out voxels: 1961 +First batch: fn: 0.0515, fp: 0.1618, label 0: tensor(116), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4392487406730652 and after 0.8597451448440552 +num_clicks 50 points_length: 1193 dynamic_size: 4 +filter out voxels: 73 +filter out voxels: 1924 +First batch: fn: 0.0414, fp: 0.1994, label 0: tensor(153), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.445681631565094 and after 0.8667199015617371 +epoch: 2/20, iter: 34/42: loss:2.199: rank:-1 +[22:11:03.858] epoch: 2/20, iter: 34/42: loss:2.199: rank:-1 +num_clicks 50 points_length: 907 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.010085265152156353 and after 0.023757722228765488 +num_clicks 50 points_length: 4281 dynamic_size: 28 +filter out voxels: 3458 +filter out voxels: 857 +First batch: fn: 0.9074, fp: 3.8126, label 0: tensor(25), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.011204585433006287 and after 0.1036086305975914 +num_clicks 50 points_length: 4090 dynamic_size: 48 +filter out voxels: 3576 +filter out voxels: 2064 +First batch: fn: 0.4454, fp: 4.0639, label 0: tensor(90), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.010768409818410873 and after 0.13358129560947418 +num_clicks 50 points_length: 3753 dynamic_size: 40 +filter out voxels: 3369 +filter out voxels: 3397 +First batch: fn: 0.2822, fp: 3.8556, label 0: tensor(76), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.010482235811650753 and after 0.14795660972595215 +num_clicks 50 points_length: 3549 dynamic_size: 37 +filter out voxels: 3203 +filter out voxels: 3498 +First batch: fn: 0.2150, fp: 3.6979, label 0: tensor(77), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.011041812598705292 and after 0.16290283203125 +num_clicks 50 points_length: 3489 dynamic_size: 33 +filter out voxels: 3175 +filter out voxels: 3507 +First batch: fn: 0.1103, fp: 3.7365, label 0: tensor(99), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01037471741437912 and after 0.17203643918037415 +num_clicks 50 points_length: 3291 dynamic_size: 39 +filter out voxels: 2996 +filter out voxels: 3523 +First batch: fn: 0.0882, fp: 3.5402, label 0: tensor(119), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01025779452174902 and after 0.1816597580909729 +num_clicks 50 points_length: 3023 dynamic_size: 45 +filter out voxels: 2729 +filter out voxels: 3510 +First batch: fn: 0.0882, fp: 3.2448, label 0: tensor(95), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.010450189001858234 and after 0.1818935126066208 +num_clicks 50 points_length: 3005 dynamic_size: 25 +filter out voxels: 2722 +filter out voxels: 3404 +First batch: fn: 0.0915, fp: 3.2216, label 0: tensor(82), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.010781549848616123 and after 0.17871837317943573 +num_clicks 50 points_length: 3169 dynamic_size: 23 +filter out voxels: 2882 +filter out voxels: 3469 +First batch: fn: 0.0706, fp: 3.4234, label 0: tensor(82), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.010422561317682266 and after 0.18121832609176636 +num_clicks 50 points_length: 3104 dynamic_size: 36 +filter out voxels: 2816 +filter out voxels: 3528 +First batch: fn: 0.0695, fp: 3.3528, label 0: tensor(104), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01005545724183321 and after 0.19039686024188995 +epoch: 2/20, iter: 35/42: loss:6.9445: rank:-1 +[22:11:21.148] epoch: 2/20, iter: 35/42: loss:6.9445: rank:-1 +num_clicks 50 points_length: 216 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28894543647766113 and after 0.3662446141242981 +num_clicks 50 points_length: 844 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 541 +First batch: fn: 0.7530, fp: 0.0003, label 0: tensor(0), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29684844613075256 and after 0.6215479373931885 +num_clicks 50 points_length: 109 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 9 +First batch: fn: 0.6999, fp: 0.0004, label 0: tensor(0), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.307773232460022 and after 0.6267058253288269 +num_clicks 50 points_length: 122 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 10 +First batch: fn: 0.6875, fp: 0.0003, label 0: tensor(0), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3089520037174225 and after 0.6450983881950378 +num_clicks 50 points_length: 96 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 4 +First batch: fn: 0.6855, fp: 0.0003, label 0: tensor(0), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3119126558303833 and after 0.6436285972595215 +num_clicks 50 points_length: 101 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 9 +First batch: fn: 0.6812, fp: 0.0003, label 0: tensor(0), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3169710636138916 and after 0.6432633399963379 +num_clicks 50 points_length: 102 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 14 +First batch: fn: 0.6805, fp: 0.0002, label 0: tensor(0), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3134969472885132 and after 0.6595194339752197 +num_clicks 50 points_length: 85 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 7 +First batch: fn: 0.6759, fp: 0.0003, label 0: tensor(0), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3158813416957855 and after 0.6598663330078125 +num_clicks 50 points_length: 88 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 11 +First batch: fn: 0.6710, fp: 0.0003, label 0: tensor(0), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31107062101364136 and after 0.6685514450073242 +num_clicks 50 points_length: 79 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.6689, fp: 0.0003, label 0: tensor(0), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31667691469192505 and after 0.6656765341758728 +num_clicks 50 points_length: 84 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 7 +First batch: fn: 0.6665, fp: 0.0003, label 0: tensor(0), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31642019748687744 and after 0.6694927215576172 +epoch: 2/20, iter: 36/42: loss:3.4903: rank:-1 +[22:11:32.928] epoch: 2/20, iter: 36/42: loss:3.4903: rank:-1 +num_clicks 50 points_length: 30341 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4347133934497833 and after 0.36359703540802 +num_clicks 50 points_length: 33407 dynamic_size: 43 +filter out voxels: 3053 +filter out voxels: 0 +First batch: fn: 0.6728, fp: 0.4283, label 0: tensor(515), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4381183683872223 and after 0.40113651752471924 +num_clicks 50 points_length: 33591 dynamic_size: 5 +filter out voxels: 3282 +filter out voxels: 0 +First batch: fn: 0.6125, fp: 0.4946, label 0: tensor(494), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4415056109428406 and after 0.43408137559890747 +num_clicks 50 points_length: 32728 dynamic_size: 15 +filter out voxels: 3313 +filter out voxels: 0 +First batch: fn: 0.5623, fp: 0.5164, label 0: tensor(454), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44791144132614136 and after 0.4638001322746277 +num_clicks 50 points_length: 31845 dynamic_size: 17 +filter out voxels: 3295 +filter out voxels: 0 +First batch: fn: 0.5182, fp: 0.5314, label 0: tensor(333), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4532491862773895 and after 0.4828777611255646 +num_clicks 50 points_length: 31717 dynamic_size: 34 +filter out voxels: 3286 +filter out voxels: 0 +First batch: fn: 0.4885, fp: 0.5569, label 0: tensor(360), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4562777876853943 and after 0.5033395886421204 +num_clicks 50 points_length: 31079 dynamic_size: 48 +filter out voxels: 3253 +filter out voxels: 0 +First batch: fn: 0.4675, fp: 0.5568, label 0: tensor(384), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4629177749156952 and after 0.524491548538208 +num_clicks 50 points_length: 30782 dynamic_size: 20 +filter out voxels: 3240 +filter out voxels: 0 +First batch: fn: 0.4418, fp: 0.5727, label 0: tensor(401), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46316713094711304 and after 0.5442270040512085 +num_clicks 50 points_length: 29672 dynamic_size: 9 +filter out voxels: 3216 +filter out voxels: 0 +First batch: fn: 0.4197, fp: 0.5582, label 0: tensor(459), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46180054545402527 and after 0.560178279876709 +num_clicks 50 points_length: 28584 dynamic_size: 15 +filter out voxels: 3216 +filter out voxels: 0 +First batch: fn: 0.3921, fp: 0.5500, label 0: tensor(384), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4645867943763733 and after 0.5809776186943054 +num_clicks 50 points_length: 27417 dynamic_size: 37 +filter out voxels: 3223 +filter out voxels: 0 +First batch: fn: 0.3679, fp: 0.5357, label 0: tensor(382), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46644216775894165 and after 0.596027135848999 +epoch: 2/20, iter: 37/42: loss:2.9281: rank:-1 +[22:11:57.220] epoch: 2/20, iter: 37/42: loss:2.9281: rank:-1 +num_clicks 50 points_length: 10676 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1217450276017189 and after 0.28913840651512146 +num_clicks 50 points_length: 18107 dynamic_size: 40 +filter out voxels: 1334 +filter out voxels: 552 +First batch: fn: 0.3721, fp: 1.3239, label 0: tensor(534), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.150492325425148 and after 0.3905206620693207 +num_clicks 50 points_length: 14912 dynamic_size: 15 +filter out voxels: 2036 +filter out voxels: 1065 +First batch: fn: 0.1413, fp: 1.2554, label 0: tensor(514), label 1: tensor(467) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16576842963695526 and after 0.45606729388237 +num_clicks 50 points_length: 13518 dynamic_size: 25 +filter out voxels: 2256 +filter out voxels: 728 +First batch: fn: 0.0274, fp: 1.2388, label 0: tensor(525), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19043269753456116 and after 0.5023365020751953 +num_clicks 50 points_length: 10856 dynamic_size: 12 +filter out voxels: 2287 +filter out voxels: 1014 +First batch: fn: 0.0169, fp: 1.0000, label 0: tensor(512), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2045515477657318 and after 0.5331899523735046 +num_clicks 50 points_length: 9319 dynamic_size: 21 +filter out voxels: 1925 +filter out voxels: 965 +First batch: fn: 0.0190, fp: 0.8539, label 0: tensor(521), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20862776041030884 and after 0.5750941038131714 +num_clicks 50 points_length: 7422 dynamic_size: 1 +filter out voxels: 1691 +filter out voxels: 750 +First batch: fn: 0.0181, fp: 0.6771, label 0: tensor(501), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21748952567577362 and after 0.6088634729385376 +num_clicks 50 points_length: 5810 dynamic_size: 37 +filter out voxels: 1256 +filter out voxels: 693 +First batch: fn: 0.0200, fp: 0.5243, label 0: tensor(535), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22715872526168823 and after 0.655889630317688 +num_clicks 50 points_length: 4253 dynamic_size: 48 +filter out voxels: 539 +filter out voxels: 512 +First batch: fn: 0.0188, fp: 0.3795, label 0: tensor(546), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23527716100215912 and after 0.6906018257141113 +num_clicks 50 points_length: 3118 dynamic_size: 29 +filter out voxels: 154 +filter out voxels: 543 +First batch: fn: 0.0199, fp: 0.2722, label 0: tensor(471), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23723775148391724 and after 0.7067524194717407 +num_clicks 50 points_length: 2878 dynamic_size: 43 +filter out voxels: 143 +filter out voxels: 525 +First batch: fn: 0.0224, fp: 0.2472, label 0: tensor(474), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23982945084571838 and after 0.7314989566802979 +epoch: 2/20, iter: 38/42: loss:3.001: rank:-1 +[22:12:17.701] epoch: 2/20, iter: 38/42: loss:3.001: rank:-1 +num_clicks 50 points_length: 201998 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3150458335876465 and after 0.2762097120285034 +num_clicks 50 points_length: 168567 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 1504 +First batch: fn: 0.9200, fp: 0.0031, label 0: tensor(269), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37690120935440063 and after 0.3496362268924713 +num_clicks 50 points_length: 150518 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 864 +First batch: fn: 0.8825, fp: 0.0015, label 0: tensor(293), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3951275944709778 and after 0.3883802890777588 +num_clicks 50 points_length: 140574 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 752 +First batch: fn: 0.8603, fp: 0.0011, label 0: tensor(209), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40223732590675354 and after 0.4082931876182556 +num_clicks 50 points_length: 133526 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 768 +First batch: fn: 0.8548, fp: 0.0008, label 0: tensor(172), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4091775417327881 and after 0.4244542717933655 +num_clicks 50 points_length: 127918 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 698 +First batch: fn: 0.8486, fp: 0.0007, label 0: tensor(153), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41511982679367065 and after 0.4445253908634186 +num_clicks 50 points_length: 123037 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 678 +First batch: fn: 0.8359, fp: 0.0015, label 0: tensor(280), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41589200496673584 and after 0.4556725025177002 +num_clicks 50 points_length: 117506 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 552 +First batch: fn: 0.8349, fp: 0.0010, label 0: tensor(193), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41747820377349854 and after 0.4642919898033142 +num_clicks 50 points_length: 114056 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 437 +First batch: fn: 0.8324, fp: 0.0010, label 0: tensor(219), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42157167196273804 and after 0.48148101568222046 +num_clicks 50 points_length: 105840 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 390 +First batch: fn: 0.8310, fp: 0.0008, label 0: tensor(164), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4283180236816406 and after 0.49304112792015076 +num_clicks 50 points_length: 102522 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 347 +First batch: fn: 0.8238, fp: 0.0007, label 0: tensor(160), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4315899610519409 and after 0.5074575543403625 +epoch: 2/20, iter: 39/42: loss:4.3429: rank:-1 +[22:12:43.073] epoch: 2/20, iter: 39/42: loss:4.3429: rank:-1 +num_clicks 50 points_length: 303 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27144524455070496 and after 0.30139824748039246 +num_clicks 50 points_length: 6054 dynamic_size: 11 +filter out voxels: 2279 +filter out voxels: 1 +First batch: fn: 0.5578, fp: 27.0858, label 0: tensor(484), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21427856385707855 and after 0.29694581031799316 +num_clicks 50 points_length: 6166 dynamic_size: 39 +filter out voxels: 2239 +filter out voxels: 2312 +First batch: fn: 0.4356, fp: 19.9142, label 0: tensor(339), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14835453033447266 and after 0.2062695026397705 +num_clicks 50 points_length: 5721 dynamic_size: 41 +filter out voxels: 2472 +filter out voxels: 14091 +First batch: fn: 0.2871, fp: 18.5941, label 0: tensor(345), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11527014523744583 and after 0.1758597493171692 +num_clicks 50 points_length: 5118 dynamic_size: 48 +filter out voxels: 2361 +filter out voxels: 23949 +First batch: fn: 0.2244, fp: 16.6667, label 0: tensor(325), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.10289418697357178 and after 0.16632536053657532 +num_clicks 50 points_length: 4965 dynamic_size: 45 +filter out voxels: 2372 +filter out voxels: 29126 +First batch: fn: 0.1749, fp: 16.2112, label 0: tensor(325), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09973200410604477 and after 0.167311429977417 +num_clicks 50 points_length: 4512 dynamic_size: 15 +filter out voxels: 2286 +filter out voxels: 30863 +First batch: fn: 0.1782, fp: 14.7129, label 0: tensor(227), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09621929377317429 and after 0.16239504516124725 +num_clicks 50 points_length: 4535 dynamic_size: 41 +filter out voxels: 2337 +filter out voxels: 32438 +First batch: fn: 0.1848, fp: 14.7822, label 0: tensor(324), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.095609150826931 and after 0.16645455360412598 +num_clicks 50 points_length: 4172 dynamic_size: 31 +filter out voxels: 2237 +filter out voxels: 32938 +First batch: fn: 0.1815, fp: 13.5875, label 0: tensor(320), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09343554079532623 and after 0.1644289344549179 +num_clicks 50 points_length: 4068 dynamic_size: 46 +filter out voxels: 2214 +filter out voxels: 34083 +First batch: fn: 0.1848, fp: 13.2409, label 0: tensor(265), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09267425537109375 and after 0.16474299132823944 +num_clicks 50 points_length: 3988 dynamic_size: 8 +filter out voxels: 2196 +filter out voxels: 34517 +First batch: fn: 0.1848, fp: 12.9769, label 0: tensor(261), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09462586045265198 and after 0.1685802936553955 +epoch: 2/20, iter: 40/42: loss:3.5807: rank:-1 +[22:12:56.317] epoch: 2/20, iter: 40/42: loss:3.5807: rank:-1 +num_clicks 50 points_length: 220780 dynamic_size: 38 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5289244055747986 and after 0.5551378130912781 +num_clicks 50 points_length: 141633 dynamic_size: 33 +filter out voxels: 1506 +First batch: fn: 0.5997, fp: 0.0418, label 0: tensor(503), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5863457918167114 and after 0.6156976222991943 +num_clicks 50 points_length: 125042 dynamic_size: 27 +filter out voxels: 385 +First batch: fn: 0.5463, fp: 0.0201, label 0: tensor(477), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5985589623451233 and after 0.6334722638130188 +num_clicks 50 points_length: 120474 dynamic_size: 44 +filter out voxels: 182 +First batch: fn: 0.5285, fp: 0.0172, label 0: tensor(384), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5957368612289429 and after 0.6420583128929138 +num_clicks 50 points_length: 118071 dynamic_size: 21 +filter out voxels: 160 +First batch: fn: 0.5204, fp: 0.0144, label 0: tensor(322), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6042287945747375 and after 0.660434901714325 +num_clicks 50 points_length: 113483 dynamic_size: 28 +filter out voxels: 184 +First batch: fn: 0.5001, fp: 0.0139, label 0: tensor(400), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6085543036460876 and after 0.6801274418830872 +num_clicks 50 points_length: 108044 dynamic_size: 9 +filter out voxels: 118 +First batch: fn: 0.4797, fp: 0.0096, label 0: tensor(243), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6205800175666809 and after 0.6982873678207397 +num_clicks 50 points_length: 103253 dynamic_size: 23 +filter out voxels: 130 +First batch: fn: 0.4588, fp: 0.0089, label 0: tensor(245), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6257719993591309 and after 0.7082499861717224 +num_clicks 50 points_length: 100755 dynamic_size: 10 +filter out voxels: 78 +First batch: fn: 0.4461, fp: 0.0103, label 0: tensor(381), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6232172846794128 and after 0.7161508202552795 +num_clicks 50 points_length: 98574 dynamic_size: 11 +filter out voxels: 57 +First batch: fn: 0.4368, fp: 0.0097, label 0: tensor(410), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6196163892745972 and after 0.7254152297973633 +num_clicks 50 points_length: 95952 dynamic_size: 11 +filter out voxels: 37 +First batch: fn: 0.4259, fp: 0.0087, label 0: tensor(291), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6262010335922241 and after 0.7359070777893066 +epoch: 2/20, iter: 41/42: loss:2.6444: rank:-1 +[22:13:09.124] epoch: 2/20, iter: 41/42: loss:2.6444: rank:-1 +current lr: 3.984160000000001e-05 +[22:13:09.126] - Train metrics: 3.2755368 +found empty patch +found empty patch +num_clicks 10 points_length: 2119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(216) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:12.890] dice before refine 3.1503008358413354e-05 and after 0.033841270953416824, label 0: tensor(0, device='cuda:0'), label 1: tensor(216, device='cuda:0') +num_clicks 10 points_length: 60868 dynamic_size: 10 +filter out voxels: 59532 +First batch: fn: 0.4969, fp: 28.2279, label 0: tensor(73), label 1: tensor(236) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75045 dynamic_size: 10 +filter out voxels: 74153 +First batch: fn: 0.2327, fp: 35.1826, label 0: tensor(113), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75113 dynamic_size: 10 +filter out voxels: 74347 +First batch: fn: 0.1491, fp: 35.2983, label 0: tensor(123), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74533 dynamic_size: 10 +filter out voxels: 73811 +First batch: fn: 0.1425, fp: 35.0311, label 0: tensor(147), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74615 dynamic_size: 10 +filter out voxels: 73957 +First batch: fn: 0.1340, fp: 35.0783, label 0: tensor(127), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75187 dynamic_size: 10 +filter out voxels: 74538 +First batch: fn: 0.1236, fp: 35.3587, label 0: tensor(130), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74946 dynamic_size: 10 +filter out voxels: 74306 +First batch: fn: 0.1185, fp: 35.2501, label 0: tensor(107), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75627 dynamic_size: 10 +filter out voxels: 74980 +First batch: fn: 0.1062, fp: 35.5838, label 0: tensor(149), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74662 dynamic_size: 10 +filter out voxels: 74039 +First batch: fn: 0.1081, fp: 35.1265, label 0: tensor(156), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74034 dynamic_size: 10 +filter out voxels: 73426 +First batch: fn: 0.1090, fp: 34.8292, label 0: tensor(155), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:17.892] dice before refine 0.0 and after 0.0484347902238369, label 0: tensor(155, device='cuda:0'), label 1: tensor(91, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4016 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(359) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:18.359] dice before refine 0.0001923949021147564 and after 0.043740276247262955, label 0: tensor(0, device='cuda:0'), label 1: tensor(359, device='cuda:0') +num_clicks 10 points_length: 77436 dynamic_size: 10 +filter out voxels: 72331 +First batch: fn: 0.5590, fp: 18.7229, label 0: tensor(346), label 1: tensor(409) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 84936 dynamic_size: 10 +filter out voxels: 82320 +First batch: fn: 0.3167, fp: 20.8327, label 0: tensor(343), label 1: tensor(373) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 86843 dynamic_size: 10 +filter out voxels: 84766 +First batch: fn: 0.1843, fp: 21.4400, label 0: tensor(346), label 1: tensor(271) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 86292 dynamic_size: 10 +filter out voxels: 84346 +First batch: fn: 0.1469, fp: 21.3401, label 0: tensor(404), label 1: tensor(218) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 85404 dynamic_size: 10 +filter out voxels: 83637 +First batch: fn: 0.1377, fp: 21.1282, label 0: tensor(375), label 1: tensor(248) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 85920 dynamic_size: 10 +filter out voxels: 84207 +First batch: fn: 0.1315, fp: 21.2629, label 0: tensor(355), label 1: tensor(203) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 85320 dynamic_size: 10 +filter out voxels: 83726 +First batch: fn: 0.1377, fp: 21.1073, label 0: tensor(303), label 1: tensor(210) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 85810 dynamic_size: 10 +filter out voxels: 84209 +First batch: fn: 0.1394, fp: 21.2276, label 0: tensor(337), label 1: tensor(236) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 85827 dynamic_size: 10 +filter out voxels: 84240 +First batch: fn: 0.1357, fp: 21.2356, label 0: tensor(364), label 1: tensor(211) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 85343 dynamic_size: 10 +filter out voxels: 83800 +First batch: fn: 0.1355, fp: 21.1153, label 0: tensor(298), label 1: tensor(220) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:26.807] dice before refine 0.0 and after 0.07508502900600433, label 0: tensor(298, device='cuda:0'), label 1: tensor(220, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 343 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:27.173] dice before refine 0.009334280155599117 and after 0.009146423079073429, label 0: tensor(0, device='cuda:0'), label 1: tensor(35, device='cuda:0') +num_clicks 10 points_length: 73666 dynamic_size: 10 +filter out voxels: 72282 +First batch: fn: 0.0087, fp: 214.7609, label 0: tensor(321), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 83571 dynamic_size: 10 +filter out voxels: 82433 +First batch: fn: 0.0612, fp: 243.5860, label 0: tensor(316), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 88474 dynamic_size: 10 +filter out voxels: 87466 +First batch: fn: 0.0641, fp: 257.8776, label 0: tensor(290), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 89472 dynamic_size: 10 +filter out voxels: 88601 +First batch: fn: 0.0466, fp: 260.8047, label 0: tensor(261), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91621 dynamic_size: 10 +filter out voxels: 90753 +First batch: fn: 0.0408, fp: 267.0758, label 0: tensor(252), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91480 dynamic_size: 10 +filter out voxels: 90689 +First batch: fn: 0.0496, fp: 266.6560, label 0: tensor(193), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 92081 dynamic_size: 10 +filter out voxels: 91305 +First batch: fn: 0.0525, fp: 268.4052, label 0: tensor(218), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 93313 dynamic_size: 10 +filter out voxels: 92514 +First batch: fn: 0.0729, fp: 271.9767, label 0: tensor(220), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 92591 dynamic_size: 10 +filter out voxels: 91857 +First batch: fn: 0.0408, fp: 269.9038, label 0: tensor(235), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 93229 dynamic_size: 10 +filter out voxels: 92469 +First batch: fn: 0.0554, fp: 271.7493, label 0: tensor(190), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:32.115] dice before refine 0.0058022961020469666 and after 0.006972453556954861, label 0: tensor(190, device='cuda:0'), label 1: tensor(14, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 2248 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(172) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:32.536] dice before refine 0.007414613850414753 and after 0.02040254883468151, label 0: tensor(0, device='cuda:0'), label 1: tensor(172, device='cuda:0') +num_clicks 10 points_length: 81911 dynamic_size: 10 +filter out voxels: 9716 +First batch: fn: 0.6206, fp: 35.8167, label 0: tensor(509), label 1: tensor(228) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 93269 dynamic_size: 10 +filter out voxels: 14241 +First batch: fn: 0.4106, fp: 41.0792, label 0: tensor(510), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 95374 dynamic_size: 10 +filter out voxels: 15983 +First batch: fn: 0.3056, fp: 42.1206, label 0: tensor(510), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 95593 dynamic_size: 10 +filter out voxels: 16985 +First batch: fn: 0.2482, fp: 42.2754, label 0: tensor(510), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 95151 dynamic_size: 10 +filter out voxels: 16985 +First batch: fn: 0.2162, fp: 42.1108, label 0: tensor(510), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 95370 dynamic_size: 10 +filter out voxels: 17626 +First batch: fn: 0.2126, fp: 42.2117, label 0: tensor(510), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 94646 dynamic_size: 10 +filter out voxels: 17301 +First batch: fn: 0.1793, fp: 41.9230, label 0: tensor(510), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 93845 dynamic_size: 10 +filter out voxels: 17392 +First batch: fn: 0.1730, fp: 41.5730, label 0: tensor(510), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 93179 dynamic_size: 10 +filter out voxels: 17105 +First batch: fn: 0.1699, fp: 41.2798, label 0: tensor(510), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 93022 dynamic_size: 10 +filter out voxels: 17365 +First batch: fn: 0.1690, fp: 41.2109, label 0: tensor(510), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:40.866] dice before refine 0.0037759034894406796 and after 0.03914916515350342, label 0: tensor(510, device='cuda:0'), label 1: tensor(75, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3675 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(344) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:41.297] dice before refine 0.0 and after 0.0630694255232811, label 0: tensor(0, device='cuda:0'), label 1: tensor(344, device='cuda:0') +num_clicks 10 points_length: 51727 dynamic_size: 10 +filter out voxels: 49204 +First batch: fn: 0.5263, fp: 13.5491, label 0: tensor(178), label 1: tensor(336) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 59876 dynamic_size: 10 +filter out voxels: 57917 +First batch: fn: 0.2893, fp: 16.0035, label 0: tensor(224), label 1: tensor(243) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 59619 dynamic_size: 10 +filter out voxels: 57911 +First batch: fn: 0.2000, fp: 16.0229, label 0: tensor(206), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58967 dynamic_size: 10 +filter out voxels: 57369 +First batch: fn: 0.1820, fp: 15.8634, label 0: tensor(231), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58133 dynamic_size: 10 +filter out voxels: 56641 +First batch: fn: 0.1774, fp: 15.6411, label 0: tensor(255), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58715 dynamic_size: 10 +filter out voxels: 57335 +First batch: fn: 0.1837, fp: 15.7932, label 0: tensor(208), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 57912 dynamic_size: 10 +filter out voxels: 56473 +First batch: fn: 0.1459, fp: 15.6125, label 0: tensor(290), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58106 dynamic_size: 10 +filter out voxels: 56778 +First batch: fn: 0.1633, fp: 15.6479, label 0: tensor(232), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58275 dynamic_size: 10 +filter out voxels: 56935 +First batch: fn: 0.1578, fp: 15.6993, label 0: tensor(274), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58219 dynamic_size: 10 +filter out voxels: 56890 +First batch: fn: 0.1567, fp: 15.6852, label 0: tensor(259), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:47.515] dice before refine 0.0 and after 0.0992925614118576, label 0: tensor(259, device='cuda:0'), label 1: tensor(135, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.026679503816095265 +[22:13:48.043] epoch: 2/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.026679503816095265 stich left and right side (total size): 1 +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:48.564] dice before refine 0.010390070267021656 and after 0.02236800454556942, label 0: tensor(0, device='cuda:0'), label 1: tensor(111, device='cuda:0') +num_clicks 10 points_length: 74214 dynamic_size: 10 +filter out voxels: 47467 +First batch: fn: 0.7296, fp: 22.9054, label 0: tensor(510), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 78127 dynamic_size: 10 +filter out voxels: 50310 +First batch: fn: 0.6010, fp: 24.2803, label 0: tensor(510), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 78059 dynamic_size: 10 +filter out voxels: 50430 +First batch: fn: 0.5032, fp: 24.3564, label 0: tensor(510), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 76382 dynamic_size: 10 +filter out voxels: 48960 +First batch: fn: 0.4232, fp: 23.9022, label 0: tensor(510), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75877 dynamic_size: 10 +filter out voxels: 48853 +First batch: fn: 0.3315, fp: 23.8331, label 0: tensor(510), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75450 dynamic_size: 10 +filter out voxels: 48751 +First batch: fn: 0.2904, fp: 23.7382, label 0: tensor(510), label 1: tensor(138) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75429 dynamic_size: 10 +filter out voxels: 48916 +First batch: fn: 0.2525, fp: 23.7694, label 0: tensor(510), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 74249 dynamic_size: 10 +filter out voxels: 48054 +First batch: fn: 0.2561, fp: 23.3901, label 0: tensor(510), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 72625 dynamic_size: 10 +filter out voxels: 47039 +First batch: fn: 0.2201, fp: 22.9089, label 0: tensor(510), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 73306 dynamic_size: 10 +filter out voxels: 47965 +First batch: fn: 0.1758, fp: 23.1701, label 0: tensor(510), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:56.186] dice before refine 0.015523969195783138 and after 0.06659604609012604, label 0: tensor(510, device='cuda:0'), label 1: tensor(117, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:13:56.562] dice before refine 0.04248129948973656 and after 0.04528103396296501, label 0: tensor(0, device='cuda:0'), label 1: tensor(101, device='cuda:0') +num_clicks 10 points_length: 90789 dynamic_size: 10 +filter out voxels: 55519 +First batch: fn: 0.3143, fp: 28.5994, label 0: tensor(510), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 93798 dynamic_size: 10 +filter out voxels: 57151 +First batch: fn: 0.2420, fp: 29.6299, label 0: tensor(510), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 92307 dynamic_size: 10 +filter out voxels: 56232 +First batch: fn: 0.2111, fp: 29.1860, label 0: tensor(510), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91842 dynamic_size: 10 +filter out voxels: 56410 +First batch: fn: 0.2022, fp: 29.0468, label 0: tensor(510), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91441 dynamic_size: 10 +filter out voxels: 56611 +First batch: fn: 0.1876, fp: 28.9338, label 0: tensor(510), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91152 dynamic_size: 10 +filter out voxels: 57054 +First batch: fn: 0.1742, fp: 28.8551, label 0: tensor(510), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 90590 dynamic_size: 10 +filter out voxels: 57152 +First batch: fn: 0.1694, fp: 28.6809, label 0: tensor(510), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91581 dynamic_size: 10 +filter out voxels: 58480 +First batch: fn: 0.1589, fp: 29.0070, label 0: tensor(510), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91458 dynamic_size: 10 +filter out voxels: 58675 +First batch: fn: 0.1532, fp: 28.9736, label 0: tensor(510), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91387 dynamic_size: 10 +filter out voxels: 59148 +First batch: fn: 0.1379, fp: 28.9662, label 0: tensor(510), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:03.832] dice before refine 0.0374932587146759 and after 0.056546323001384735, label 0: tensor(510, device='cuda:0'), label 1: tensor(137, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:04.227] dice before refine 0.013032879680395126 and after 0.025484157726168633, label 0: tensor(0, device='cuda:0'), label 1: tensor(143, device='cuda:0') +num_clicks 10 points_length: 94300 dynamic_size: 10 +filter out voxels: 72137 +First batch: fn: 0.6073, fp: 29.4245, label 0: tensor(510), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 101466 dynamic_size: 10 +filter out voxels: 76528 +First batch: fn: 0.4494, fp: 31.8646, label 0: tensor(509), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 101137 dynamic_size: 10 +filter out voxels: 75031 +First batch: fn: 0.3755, fp: 31.8338, label 0: tensor(509), label 1: tensor(176) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 100468 dynamic_size: 10 +filter out voxels: 73888 +First batch: fn: 0.2933, fp: 31.7029, label 0: tensor(510), label 1: tensor(183) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 100228 dynamic_size: 10 +filter out voxels: 73735 +First batch: fn: 0.2452, fp: 31.6745, label 0: tensor(509), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 97624 dynamic_size: 10 +filter out voxels: 71495 +First batch: fn: 0.2325, fp: 30.8580, label 0: tensor(509), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 97922 dynamic_size: 10 +filter out voxels: 71916 +First batch: fn: 0.2226, fp: 30.9627, label 0: tensor(510), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 99474 dynamic_size: 10 +filter out voxels: 73710 +First batch: fn: 0.1892, fp: 31.4904, label 0: tensor(510), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 99021 dynamic_size: 10 +filter out voxels: 74033 +First batch: fn: 0.1825, fp: 31.3529, label 0: tensor(510), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 99107 dynamic_size: 10 +filter out voxels: 74967 +First batch: fn: 0.1688, fp: 31.3939, label 0: tensor(510), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:11.587] dice before refine 0.01541608665138483 and after 0.05123034119606018, label 0: tensor(510, device='cuda:0'), label 1: tensor(97, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:11.955] dice before refine 0.04868682101368904 and after 0.052019309252500534, label 0: tensor(0, device='cuda:0'), label 1: tensor(91, device='cuda:0') +num_clicks 10 points_length: 81897 dynamic_size: 10 +filter out voxels: 53860 +First batch: fn: 0.2844, fp: 25.7975, label 0: tensor(510), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 85073 dynamic_size: 10 +filter out voxels: 54182 +First batch: fn: 0.2029, fp: 26.8904, label 0: tensor(510), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 83868 dynamic_size: 10 +filter out voxels: 53280 +First batch: fn: 0.1892, fp: 26.5204, label 0: tensor(510), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 83953 dynamic_size: 10 +filter out voxels: 53344 +First batch: fn: 0.1659, fp: 26.5707, label 0: tensor(510), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 82247 dynamic_size: 10 +filter out voxels: 52246 +First batch: fn: 0.1608, fp: 26.0325, label 0: tensor(509), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 84176 dynamic_size: 10 +filter out voxels: 54057 +First batch: fn: 0.1605, fp: 26.6471, label 0: tensor(510), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 84807 dynamic_size: 10 +filter out voxels: 54614 +First batch: fn: 0.1379, fp: 26.8707, label 0: tensor(510), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 83947 dynamic_size: 10 +filter out voxels: 54169 +First batch: fn: 0.1303, fp: 26.6045, label 0: tensor(510), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 83912 dynamic_size: 10 +filter out voxels: 54513 +First batch: fn: 0.1398, fp: 26.5838, label 0: tensor(510), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 83711 dynamic_size: 10 +filter out voxels: 54658 +First batch: fn: 0.1338, fp: 26.5258, label 0: tensor(510), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:19.032] dice before refine 0.049322132021188736 and after 0.06306429207324982, label 0: tensor(510, device='cuda:0'), label 1: tensor(48, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +0.037154667248780075 +[22:14:20.291] epoch: 2/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.037154667248780075 stich left and right side (total size): 1 +num_clicks 10 points_length: 23364 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:20.816] dice before refine 0.010122091509401798 and after 0.06382181495428085, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 52455 dynamic_size: 10 +filter out voxels: 30805 +First batch: fn: 0.9235, fp: 1.3216, label 0: tensor(39), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 67405 dynamic_size: 10 +filter out voxels: 49136 +First batch: fn: 0.7770, fp: 2.1080, label 0: tensor(46), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 69715 dynamic_size: 10 +filter out voxels: 55015 +First batch: fn: 0.6131, fp: 2.3707, label 0: tensor(109), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 67943 dynamic_size: 10 +filter out voxels: 55550 +First batch: fn: 0.5114, fp: 2.3966, label 0: tensor(128), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 63633 dynamic_size: 10 +filter out voxels: 53732 +First batch: fn: 0.3958, fp: 2.3277, label 0: tensor(202), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60304 dynamic_size: 10 +filter out voxels: 52058 +First batch: fn: 0.3194, fp: 2.2616, label 0: tensor(160), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 59187 dynamic_size: 10 +filter out voxels: 52407 +First batch: fn: 0.2529, fp: 2.2804, label 0: tensor(303), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56098 dynamic_size: 10 +filter out voxels: 50688 +First batch: fn: 0.1923, fp: 2.2088, label 0: tensor(240), label 1: tensor(479) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 54838 dynamic_size: 10 +filter out voxels: 50564 +First batch: fn: 0.1384, fp: 2.2087, label 0: tensor(233), label 1: tensor(344) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53478 dynamic_size: 10 +filter out voxels: 49724 +First batch: fn: 0.1158, fp: 2.1731, label 0: tensor(268), label 1: tensor(394) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:28.197] dice before refine 0.20453490316867828 and after 0.44698676466941833, label 0: tensor(268, device='cuda:0'), label 1: tensor(394, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 88105 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:28.760] dice before refine 0.6321223974227905 and after 0.6787323355674744, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 46561 dynamic_size: 10 +filter out voxels: 2676 +First batch: fn: 0.4418, fp: 0.0867, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28861 dynamic_size: 10 +filter out voxels: 595 +First batch: fn: 0.2829, fp: 0.0447, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22979 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.2296, fp: 0.0312, label 0: tensor(478), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19782 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.1989, fp: 0.0256, label 0: tensor(538), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17346 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.1741, fp: 0.0228, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16067 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.1565, fp: 0.0258, label 0: tensor(506), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13859 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.1299, fp: 0.0274, label 0: tensor(526), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12199 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.1078, fp: 0.0306, label 0: tensor(537), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10685 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.0912, fp: 0.0301, label 0: tensor(523), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9650 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.0777, fp: 0.0319, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:39.745] dice before refine 0.8369540572166443 and after 0.9489872455596924, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 204709 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:40.419] dice before refine 0.46217644214630127 and after 0.4662023186683655, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 142627 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6957, fp: 0.0010, label 0: tensor(24), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 128607 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6282, fp: 0.0001, label 0: tensor(12), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 126207 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6163, fp: 0.0002, label 0: tensor(36), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 122568 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5984, fp: 0.0004, label 0: tensor(51), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 119550 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5837, fp: 0.0003, label 0: tensor(47), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 115915 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5658, fp: 0.0004, label 0: tensor(51), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 112183 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5474, fp: 0.0006, label 0: tensor(79), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 110078 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5372, fp: 0.0005, label 0: tensor(62), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 107819 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5262, fp: 0.0005, label 0: tensor(70), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 107124 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5228, fp: 0.0004, label 0: tensor(73), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:48.756] dice before refine 0.5720407366752625 and after 0.6551771759986877, label 0: tensor(73, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 347521 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:49.594] dice before refine 0.5319765210151672 and after 0.5732249021530151, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 209952 dynamic_size: 10 +filter out voxels: 155 +First batch: fn: 0.5943, fp: 0.0099, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 197188 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.5665, fp: 0.0009, label 0: tensor(167), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 193176 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5548, fp: 0.0011, label 0: tensor(130), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 189615 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5446, fp: 0.0010, label 0: tensor(129), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 187802 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5394, fp: 0.0010, label 0: tensor(125), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 185010 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5315, fp: 0.0009, label 0: tensor(108), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 183194 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5263, fp: 0.0009, label 0: tensor(95), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 178791 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5135, fp: 0.0009, label 0: tensor(98), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 175080 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5030, fp: 0.0008, label 0: tensor(94), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 166625 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4787, fp: 0.0007, label 0: tensor(105), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:14:59.897] dice before refine 0.6202824115753174 and after 0.7049665451049805, label 0: tensor(105, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25099 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:00.352] dice before refine 0.11988867819309235 and after 0.1778898537158966, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 28690 dynamic_size: 10 +filter out voxels: 5765 +First batch: fn: 0.8763, fp: 0.2667, label 0: tensor(207), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36195 dynamic_size: 10 +filter out voxels: 15764 +First batch: fn: 0.7750, fp: 0.6671, label 0: tensor(182), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42780 dynamic_size: 10 +filter out voxels: 25504 +First batch: fn: 0.6494, fp: 1.0551, label 0: tensor(183), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43681 dynamic_size: 10 +filter out voxels: 28811 +First batch: fn: 0.5556, fp: 1.1847, label 0: tensor(162), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41464 dynamic_size: 10 +filter out voxels: 29081 +First batch: fn: 0.4544, fp: 1.1976, label 0: tensor(182), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42105 dynamic_size: 10 +filter out voxels: 31966 +First batch: fn: 0.3673, fp: 1.3102, label 0: tensor(213), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40386 dynamic_size: 10 +filter out voxels: 32150 +First batch: fn: 0.2938, fp: 1.3153, label 0: tensor(179), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39851 dynamic_size: 10 +filter out voxels: 32985 +First batch: fn: 0.2361, fp: 1.3517, label 0: tensor(216), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38963 dynamic_size: 10 +filter out voxels: 33132 +First batch: fn: 0.1922, fp: 1.3602, label 0: tensor(247), label 1: tensor(474) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38151 dynamic_size: 10 +filter out voxels: 33075 +First batch: fn: 0.1515, fp: 1.3685, label 0: tensor(235), label 1: tensor(446) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:08.310] dice before refine 0.25622090697288513 and after 0.5411666631698608, label 0: tensor(235, device='cuda:0'), label 1: tensor(446, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 82461 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:08.888] dice before refine 0.2321084439754486 and after 0.3102399706840515, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 68269 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.8138, fp: 0.0141, label 0: tensor(308), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 52956 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6119, fp: 0.0303, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42764 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4938, fp: 0.0248, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35103 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4045, fp: 0.0212, label 0: tensor(495), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28050 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3216, fp: 0.0185, label 0: tensor(432), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24567 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.2732, fp: 0.0247, label 0: tensor(503), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21465 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.2389, fp: 0.0214, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17668 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1925, fp: 0.0218, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15532 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.1664, fp: 0.0219, label 0: tensor(525), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14421 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1483, fp: 0.0266, label 0: tensor(535), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:19.890] dice before refine 0.7753812074661255 and after 0.9174346923828125, label 0: tensor(535, device='cuda:0'), label 1: tensor(509, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 308412 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:20.664] dice before refine 0.5771431922912598 and after 0.5841461420059204, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 181536 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5866, fp: 0.0020, label 0: tensor(182), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 175865 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5695, fp: 0.0007, label 0: tensor(102), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 172153 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5573, fp: 0.0009, label 0: tensor(101), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 168596 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5457, fp: 0.0010, label 0: tensor(119), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 164704 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5331, fp: 0.0009, label 0: tensor(105), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 161331 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5223, fp: 0.0008, label 0: tensor(132), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 159919 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5177, fp: 0.0008, label 0: tensor(85), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 154824 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5010, fp: 0.0010, label 0: tensor(128), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 153392 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4965, fp: 0.0009, label 0: tensor(117), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 152466 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4934, fp: 0.0010, label 0: tensor(132), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:30.290] dice before refine 0.6050511598587036 and after 0.6811520457267761, label 0: tensor(132, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 355661 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:31.138] dice before refine 0.4952365756034851 and after 0.5178167819976807, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 233111 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6481, fp: 0.0074, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 229242 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6398, fp: 0.0048, label 0: tensor(487), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 224958 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6291, fp: 0.0034, label 0: tensor(442), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 220785 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6180, fp: 0.0027, label 0: tensor(370), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 215665 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6041, fp: 0.0023, label 0: tensor(291), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 211299 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5917, fp: 0.0024, label 0: tensor(336), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 207125 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5803, fp: 0.0021, label 0: tensor(325), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 201084 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5634, fp: 0.0020, label 0: tensor(270), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 197429 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5535, fp: 0.0016, label 0: tensor(203), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 193131 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5408, fp: 0.0023, label 0: tensor(312), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:43.256] dice before refine 0.5588208436965942 and after 0.6268035173416138, label 0: tensor(312, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.6380511576479132 +[22:15:43.928] epoch: 2/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.6380511576479132 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:44.449] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 3653 dynamic_size: 10 +filter out voxels: 3620 +First batch: fn: 1.0000, fp: 109.6970, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2221 dynamic_size: 10 +filter out voxels: 2188 +First batch: fn: 1.0000, fp: 66.3030, label 0: tensor(9), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1398 dynamic_size: 10 +filter out voxels: 1365 +First batch: fn: 1.0000, fp: 41.3636, label 0: tensor(9), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1349 dynamic_size: 10 +filter out voxels: 1316 +First batch: fn: 1.0000, fp: 39.8788, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1585 dynamic_size: 10 +filter out voxels: 1552 +First batch: fn: 1.0000, fp: 47.0303, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1500 dynamic_size: 10 +filter out voxels: 1467 +First batch: fn: 1.0000, fp: 44.4545, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1635 dynamic_size: 10 +filter out voxels: 1602 +First batch: fn: 1.0000, fp: 48.5455, label 0: tensor(9), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1382 dynamic_size: 10 +filter out voxels: 1349 +First batch: fn: 1.0000, fp: 40.8788, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1562 dynamic_size: 10 +filter out voxels: 1529 +First batch: fn: 1.0000, fp: 46.3333, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1598 dynamic_size: 10 +filter out voxels: 1565 +First batch: fn: 1.0000, fp: 47.4242, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:47.301] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:47.676] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 6633 dynamic_size: 10 +filter out voxels: 6600 +First batch: fn: 1.0000, fp: 200.0000, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8539 dynamic_size: 10 +filter out voxels: 8506 +First batch: fn: 1.0000, fp: 257.7576, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9094 dynamic_size: 10 +filter out voxels: 9061 +First batch: fn: 1.0000, fp: 274.5757, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9249 dynamic_size: 10 +filter out voxels: 9216 +First batch: fn: 1.0000, fp: 279.2727, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9115 dynamic_size: 10 +filter out voxels: 9082 +First batch: fn: 1.0000, fp: 275.2121, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9228 dynamic_size: 10 +filter out voxels: 9195 +First batch: fn: 1.0000, fp: 278.6364, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9156 dynamic_size: 10 +filter out voxels: 9123 +First batch: fn: 1.0000, fp: 276.4546, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9053 dynamic_size: 10 +filter out voxels: 9020 +First batch: fn: 1.0000, fp: 273.3333, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9301 dynamic_size: 10 +filter out voxels: 9268 +First batch: fn: 1.0000, fp: 280.8485, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9081 dynamic_size: 10 +filter out voxels: 9048 +First batch: fn: 1.0000, fp: 274.1818, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:50.485] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.0 +[22:15:50.870] epoch: 2/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(220) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:51.339] dice before refine 0.0 and after 0.024796759709715843, label 0: tensor(0, device='cuda:0'), label 1: tensor(220, device='cuda:0') +num_clicks 10 points_length: 35867 dynamic_size: 10 +filter out voxels: 34909 +First batch: fn: 0.6752, fp: 24.8711, label 0: tensor(17), label 1: tensor(169) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46998 dynamic_size: 10 +filter out voxels: 46431 +First batch: fn: 0.3333, fp: 33.1410, label 0: tensor(33), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46967 dynamic_size: 10 +filter out voxels: 46486 +First batch: fn: 0.2087, fp: 33.2436, label 0: tensor(53), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45635 dynamic_size: 10 +filter out voxels: 45210 +First batch: fn: 0.1524, fp: 32.3511, label 0: tensor(61), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44343 dynamic_size: 10 +filter out voxels: 43945 +First batch: fn: 0.1496, fp: 31.4338, label 0: tensor(43), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44744 dynamic_size: 10 +filter out voxels: 44354 +First batch: fn: 0.1232, fp: 31.7457, label 0: tensor(68), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44011 dynamic_size: 10 +filter out voxels: 43639 +First batch: fn: 0.1239, fp: 31.2229, label 0: tensor(69), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42948 dynamic_size: 10 +filter out voxels: 42567 +First batch: fn: 0.1332, fp: 30.4566, label 0: tensor(72), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42137 dynamic_size: 10 +filter out voxels: 41757 +First batch: fn: 0.1360, fp: 29.8761, label 0: tensor(54), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43494 dynamic_size: 10 +filter out voxels: 43130 +First batch: fn: 0.1197, fp: 30.8590, label 0: tensor(60), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:55.262] dice before refine 0.0 and after 0.05369800701737404, label 0: tensor(60, device='cuda:0'), label 1: tensor(53, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4392 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(455) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:15:55.682] dice before refine 0.0005747952382080257 and after 0.11613383144140244, label 0: tensor(0, device='cuda:0'), label 1: tensor(455, device='cuda:0') +num_clicks 10 points_length: 35664 dynamic_size: 10 +filter out voxels: 33344 +First batch: fn: 0.4665, fp: 7.6537, label 0: tensor(87), label 1: tensor(299) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41047 dynamic_size: 10 +filter out voxels: 39787 +First batch: fn: 0.1755, fp: 9.1703, label 0: tensor(163), label 1: tensor(156) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39464 dynamic_size: 10 +filter out voxels: 38402 +First batch: fn: 0.1243, fp: 8.8611, label 0: tensor(122), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39254 dynamic_size: 10 +filter out voxels: 38322 +First batch: fn: 0.0836, fp: 8.8541, label 0: tensor(176), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37374 dynamic_size: 10 +filter out voxels: 36513 +First batch: fn: 0.0902, fp: 8.4194, label 0: tensor(127), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38183 dynamic_size: 10 +filter out voxels: 37308 +First batch: fn: 0.0776, fp: 8.6161, label 0: tensor(168), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37117 dynamic_size: 10 +filter out voxels: 36280 +First batch: fn: 0.0781, fp: 8.3730, label 0: tensor(167), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37233 dynamic_size: 10 +filter out voxels: 36421 +First batch: fn: 0.0717, fp: 8.4057, label 0: tensor(180), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36378 dynamic_size: 10 +filter out voxels: 35568 +First batch: fn: 0.0792, fp: 8.2036, label 0: tensor(117), label 1: tensor(120) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38007 dynamic_size: 10 +filter out voxels: 37176 +First batch: fn: 0.0565, fp: 8.5972, label 0: tensor(144), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:01.000] dice before refine 0.018534192815423012 and after 0.1804484874010086, label 0: tensor(144, device='cuda:0'), label 1: tensor(94, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(238) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:01.393] dice before refine 0.0015665212413296103 and after 0.26394644379615784, label 0: tensor(0, device='cuda:0'), label 1: tensor(238, device='cuda:0') +num_clicks 10 points_length: 4618 dynamic_size: 10 +filter out voxels: 3976 +First batch: fn: 0.4103, fp: 2.8789, label 0: tensor(42), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5359 dynamic_size: 10 +filter out voxels: 4894 +First batch: fn: 0.2194, fp: 3.5976, label 0: tensor(87), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5021 dynamic_size: 10 +filter out voxels: 4578 +First batch: fn: 0.2094, fp: 3.3668, label 0: tensor(53), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5177 dynamic_size: 10 +filter out voxels: 4777 +First batch: fn: 0.1353, fp: 3.5520, label 0: tensor(68), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4702 dynamic_size: 10 +filter out voxels: 4325 +First batch: fn: 0.1197, fp: 3.2293, label 0: tensor(62), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4587 dynamic_size: 10 +filter out voxels: 4220 +First batch: fn: 0.1090, fp: 3.1581, label 0: tensor(72), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4449 dynamic_size: 10 +filter out voxels: 4085 +First batch: fn: 0.1090, fp: 3.0598, label 0: tensor(56), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4260 dynamic_size: 10 +filter out voxels: 3906 +First batch: fn: 0.1090, fp: 2.9252, label 0: tensor(79), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4193 dynamic_size: 10 +filter out voxels: 3845 +First batch: fn: 0.1075, fp: 2.8789, label 0: tensor(50), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4219 dynamic_size: 10 +filter out voxels: 3873 +First batch: fn: 0.1083, fp: 2.8967, label 0: tensor(81), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:05.231] dice before refine 0.007303218822926283 and after 0.39993584156036377, label 0: tensor(81, device='cuda:0'), label 1: tensor(32, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4409 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(482) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:05.644] dice before refine 0.01080042403191328 and after 0.15765823423862457, label 0: tensor(0, device='cuda:0'), label 1: tensor(482, device='cuda:0') +num_clicks 10 points_length: 26244 dynamic_size: 10 +filter out voxels: 23352 +First batch: fn: 0.4430, fp: 5.5094, label 0: tensor(131), label 1: tensor(400) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31779 dynamic_size: 10 +filter out voxels: 29416 +First batch: fn: 0.1154, fp: 7.0923, label 0: tensor(330), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29725 dynamic_size: 10 +filter out voxels: 28084 +First batch: fn: 0.0928, fp: 6.6491, label 0: tensor(213), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29373 dynamic_size: 10 +filter out voxels: 27984 +First batch: fn: 0.0792, fp: 6.5829, label 0: tensor(154), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29348 dynamic_size: 10 +filter out voxels: 28040 +First batch: fn: 0.0665, fp: 6.5899, label 0: tensor(197), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28968 dynamic_size: 10 +filter out voxels: 27738 +First batch: fn: 0.0597, fp: 6.5105, label 0: tensor(224), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28745 dynamic_size: 10 +filter out voxels: 27568 +First batch: fn: 0.0578, fp: 6.4618, label 0: tensor(187), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28977 dynamic_size: 10 +filter out voxels: 27804 +First batch: fn: 0.0513, fp: 6.5210, label 0: tensor(183), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29086 dynamic_size: 10 +filter out voxels: 27924 +First batch: fn: 0.0508, fp: 6.5462, label 0: tensor(209), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28740 dynamic_size: 10 +filter out voxels: 27613 +First batch: fn: 0.0540, fp: 6.4645, label 0: tensor(232), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:11.397] dice before refine 0.05738084390759468 and after 0.22590190172195435, label 0: tensor(232, device='cuda:0'), label 1: tensor(68, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(302) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:11.779] dice before refine 0.0 and after 0.09258478879928589, label 0: tensor(0, device='cuda:0'), label 1: tensor(302, device='cuda:0') +num_clicks 10 points_length: 17230 dynamic_size: 10 +filter out voxels: 15354 +First batch: fn: 0.6598, fp: 6.0081, label 0: tensor(50), label 1: tensor(248) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 52053 dynamic_size: 10 +filter out voxels: 50732 +First batch: fn: 0.3533, fp: 19.7910, label 0: tensor(125), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 63322 dynamic_size: 10 +filter out voxels: 62204 +First batch: fn: 0.2515, fp: 24.2539, label 0: tensor(112), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 64764 dynamic_size: 10 +filter out voxels: 63737 +First batch: fn: 0.2279, fp: 24.8355, label 0: tensor(93), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 66389 dynamic_size: 10 +filter out voxels: 65453 +First batch: fn: 0.1993, fp: 25.4930, label 0: tensor(86), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 67335 dynamic_size: 10 +filter out voxels: 66417 +First batch: fn: 0.1722, fp: 25.8862, label 0: tensor(118), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 68380 dynamic_size: 10 +filter out voxels: 67601 +First batch: fn: 0.0948, fp: 26.3680, label 0: tensor(60), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 67692 dynamic_size: 10 +filter out voxels: 66926 +First batch: fn: 0.0998, fp: 26.0967, label 0: tensor(126), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 67666 dynamic_size: 10 +filter out voxels: 66946 +First batch: fn: 0.0967, fp: 26.0898, label 0: tensor(96), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 66919 dynamic_size: 10 +filter out voxels: 66224 +First batch: fn: 0.1029, fp: 25.7945, label 0: tensor(119), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:16.295] dice before refine 0.0007716049440205097 and after 0.06527947634458542, label 0: tensor(119, device='cuda:0'), label 1: tensor(60, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8531 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:16.722] dice before refine 0.4560388922691345 and after 0.7167572975158691, label 0: tensor(0, device='cuda:0'), label 1: tensor(532, device='cuda:0') +num_clicks 10 points_length: 4584 dynamic_size: 10 +filter out voxels: 763 +First batch: fn: 0.3201, fp: 0.2172, label 0: tensor(154), label 1: tensor(465) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4235 dynamic_size: 10 +filter out voxels: 1269 +First batch: fn: 0.0481, fp: 0.4484, label 0: tensor(510), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3309 dynamic_size: 10 +filter out voxels: 464 +First batch: fn: 0.0274, fp: 0.3605, label 0: tensor(509), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2902 dynamic_size: 10 +filter out voxels: 221 +First batch: fn: 0.0192, fp: 0.3209, label 0: tensor(507), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2652 dynamic_size: 10 +filter out voxels: 191 +First batch: fn: 0.0177, fp: 0.2932, label 0: tensor(371), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2570 dynamic_size: 10 +filter out voxels: 206 +First batch: fn: 0.0177, fp: 0.2836, label 0: tensor(358), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2444 dynamic_size: 10 +filter out voxels: 206 +First batch: fn: 0.0183, fp: 0.2682, label 0: tensor(380), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2377 dynamic_size: 10 +filter out voxels: 202 +First batch: fn: 0.0196, fp: 0.2591, label 0: tensor(488), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2265 dynamic_size: 10 +filter out voxels: 188 +First batch: fn: 0.0211, fp: 0.2444, label 0: tensor(446), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2207 dynamic_size: 10 +filter out voxels: 196 +First batch: fn: 0.0230, fp: 0.2357, label 0: tensor(298), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:23.814] dice before refine 0.7811495065689087 and after 0.8837652802467346, label 0: tensor(298, device='cuda:0'), label 1: tensor(87, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(244) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:24.195] dice before refine 0.01868230104446411 and after 0.2284727841615677, label 0: tensor(0, device='cuda:0'), label 1: tensor(244, device='cuda:0') +num_clicks 10 points_length: 7598 dynamic_size: 10 +filter out voxels: 6009 +First batch: fn: 0.5646, fp: 2.3758, label 0: tensor(42), label 1: tensor(273) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11544 dynamic_size: 10 +filter out voxels: 10337 +First batch: fn: 0.2109, fp: 4.2566, label 0: tensor(122), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10419 dynamic_size: 10 +filter out voxels: 9372 +First batch: fn: 0.1552, fp: 3.8769, label 0: tensor(148), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10020 dynamic_size: 10 +filter out voxels: 9088 +First batch: fn: 0.1490, fp: 3.7287, label 0: tensor(110), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10032 dynamic_size: 10 +filter out voxels: 9165 +First batch: fn: 0.1331, fp: 3.7492, label 0: tensor(99), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10398 dynamic_size: 10 +filter out voxels: 9546 +First batch: fn: 0.0793, fp: 3.9447, label 0: tensor(99), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9937 dynamic_size: 10 +filter out voxels: 9137 +First batch: fn: 0.0836, fp: 3.7620, label 0: tensor(115), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9826 dynamic_size: 10 +filter out voxels: 9087 +First batch: fn: 0.0751, fp: 3.7276, label 0: tensor(130), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9699 dynamic_size: 10 +filter out voxels: 8987 +First batch: fn: 0.0782, fp: 3.6753, label 0: tensor(113), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9853 dynamic_size: 10 +filter out voxels: 9161 +First batch: fn: 0.0793, fp: 3.7337, label 0: tensor(33), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:28.530] dice before refine 0.09650831669569016 and after 0.3231370449066162, label 0: tensor(33, device='cuda:0'), label 1: tensor(32, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:28.954] dice before refine 0.4252600371837616 and after 0.510728120803833, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 12747 dynamic_size: 10 +filter out voxels: 8912 +First batch: fn: 0.2217, fp: 1.2695, label 0: tensor(352), label 1: tensor(353) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21889 dynamic_size: 10 +filter out voxels: 18292 +First batch: fn: 0.0421, fp: 2.5186, label 0: tensor(555), label 1: tensor(138) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29884 dynamic_size: 10 +filter out voxels: 26900 +First batch: fn: 0.0233, fp: 3.4727, label 0: tensor(484), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32600 dynamic_size: 10 +filter out voxels: 29849 +First batch: fn: 0.0144, fp: 3.7994, label 0: tensor(383), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34111 dynamic_size: 10 +filter out voxels: 31615 +First batch: fn: 0.0151, fp: 3.9754, label 0: tensor(432), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33470 dynamic_size: 10 +filter out voxels: 31201 +First batch: fn: 0.0167, fp: 3.8988, label 0: tensor(456), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34962 dynamic_size: 10 +filter out voxels: 32799 +First batch: fn: 0.0202, fp: 4.0698, label 0: tensor(384), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36071 dynamic_size: 10 +filter out voxels: 34048 +First batch: fn: 0.0214, fp: 4.1984, label 0: tensor(458), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36742 dynamic_size: 10 +filter out voxels: 34793 +First batch: fn: 0.0236, fp: 4.2747, label 0: tensor(439), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36807 dynamic_size: 10 +filter out voxels: 34951 +First batch: fn: 0.0267, fp: 4.2792, label 0: tensor(291), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:36.023] dice before refine 0.27908843755722046 and after 0.2996385395526886, label 0: tensor(291, device='cuda:0'), label 1: tensor(110, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +0.205108950083906 +[22:16:36.765] epoch: 2/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.205108950083906 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(219) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:37.270] dice before refine 0.0 and after 0.00927018653601408, label 0: tensor(0, device='cuda:0'), label 1: tensor(219, device='cuda:0') +num_clicks 10 points_length: 104094 dynamic_size: 10 +filter out voxels: 102826 +First batch: fn: 0.6069, fp: 83.4076, label 0: tensor(86), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 118528 dynamic_size: 10 +filter out voxels: 117604 +First batch: fn: 0.4302, fp: 95.2341, label 0: tensor(92), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 112841 dynamic_size: 10 +filter out voxels: 112079 +First batch: fn: 0.3850, fp: 90.6893, label 0: tensor(70), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 114886 dynamic_size: 10 +filter out voxels: 114204 +First batch: fn: 0.2865, fp: 92.4383, label 0: tensor(96), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 114584 dynamic_size: 10 +filter out voxels: 113961 +First batch: fn: 0.2381, fp: 92.2429, label 0: tensor(69), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 115312 dynamic_size: 10 +filter out voxels: 114732 +First batch: fn: 0.1881, fp: 92.8805, label 0: tensor(109), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 112403 dynamic_size: 10 +filter out voxels: 111904 +First batch: fn: 0.1743, fp: 90.5464, label 0: tensor(101), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 113645 dynamic_size: 10 +filter out voxels: 113165 +First batch: fn: 0.1630, fp: 91.5601, label 0: tensor(47), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 113593 dynamic_size: 10 +filter out voxels: 113123 +First batch: fn: 0.1485, fp: 91.5327, label 0: tensor(70), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 112589 dynamic_size: 10 +filter out voxels: 112129 +First batch: fn: 0.1477, fp: 90.7232, label 0: tensor(120), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:41.348] dice before refine 0.0 and after 0.018768956884741783, label 0: tensor(120, device='cuda:0'), label 1: tensor(12, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 5457 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:41.764] dice before refine 0.06095890328288078 and after 0.2043064534664154, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 23835 dynamic_size: 10 +filter out voxels: 11976 +First batch: fn: 0.4393, fp: 3.9285, label 0: tensor(508), label 1: tensor(293) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31026 dynamic_size: 10 +filter out voxels: 14467 +First batch: fn: 0.1807, fp: 5.5049, label 0: tensor(510), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31659 dynamic_size: 10 +filter out voxels: 13933 +First batch: fn: 0.0834, fp: 5.7182, label 0: tensor(510), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31677 dynamic_size: 10 +filter out voxels: 13261 +First batch: fn: 0.0464, fp: 5.7585, label 0: tensor(510), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30709 dynamic_size: 10 +filter out voxels: 12899 +First batch: fn: 0.0374, fp: 5.5901, label 0: tensor(510), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30000 dynamic_size: 10 +filter out voxels: 12691 +First batch: fn: 0.0330, fp: 5.4645, label 0: tensor(510), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27788 dynamic_size: 10 +filter out voxels: 12318 +First batch: fn: 0.0295, fp: 5.0627, label 0: tensor(510), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26742 dynamic_size: 10 +filter out voxels: 12347 +First batch: fn: 0.0258, fp: 4.8747, label 0: tensor(510), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26882 dynamic_size: 10 +filter out voxels: 12548 +First batch: fn: 0.0260, fp: 4.9001, label 0: tensor(510), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26318 dynamic_size: 10 +filter out voxels: 12589 +First batch: fn: 0.0288, fp: 4.7940, label 0: tensor(510), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:49.492] dice before refine 0.18295033276081085 and after 0.2912733256816864, label 0: tensor(510, device='cuda:0'), label 1: tensor(35, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:49.933] dice before refine 0.0 and after 0.005453653633594513, label 0: tensor(0, device='cuda:0'), label 1: tensor(124, device='cuda:0') +num_clicks 10 points_length: 50697 dynamic_size: 10 +filter out voxels: 49524 +First batch: fn: 0.8878, fp: 40.0299, label 0: tensor(22), label 1: tensor(157) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 59670 dynamic_size: 10 +filter out voxels: 58818 +First batch: fn: 0.4818, fp: 47.6780, label 0: tensor(67), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 57531 dynamic_size: 10 +filter out voxels: 56756 +First batch: fn: 0.3600, fp: 46.0734, label 0: tensor(38), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58922 dynamic_size: 10 +filter out voxels: 58220 +First batch: fn: 0.2502, fp: 47.3059, label 0: tensor(58), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58657 dynamic_size: 10 +filter out voxels: 58066 +First batch: fn: 0.1832, fp: 47.1590, label 0: tensor(92), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56791 dynamic_size: 10 +filter out voxels: 56274 +First batch: fn: 0.1848, fp: 45.6513, label 0: tensor(59), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56816 dynamic_size: 10 +filter out voxels: 56334 +First batch: fn: 0.1832, fp: 45.6731, label 0: tensor(68), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56400 dynamic_size: 10 +filter out voxels: 55944 +First batch: fn: 0.1848, fp: 45.3358, label 0: tensor(56), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 57676 dynamic_size: 10 +filter out voxels: 57190 +First batch: fn: 0.1566, fp: 46.3939, label 0: tensor(125), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56491 dynamic_size: 10 +filter out voxels: 56083 +First batch: fn: 0.1808, fp: 45.4132, label 0: tensor(39), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:53.666] dice before refine 0.0 and after 0.03466379642486572, label 0: tensor(39, device='cuda:0'), label 1: tensor(51, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 31898 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:16:54.141] dice before refine 0.4558165669441223 and after 0.4696090519428253, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 51362 dynamic_size: 10 +filter out voxels: 28409 +First batch: fn: 0.2872, fp: 1.3230, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 52708 dynamic_size: 10 +filter out voxels: 32869 +First batch: fn: 0.1903, fp: 1.4621, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 52722 dynamic_size: 10 +filter out voxels: 35001 +First batch: fn: 0.1166, fp: 1.5363, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53175 dynamic_size: 10 +filter out voxels: 36835 +First batch: fn: 0.0615, fp: 1.6055, label 0: tensor(509), label 1: tensor(326) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 52796 dynamic_size: 10 +filter out voxels: 36881 +First batch: fn: 0.0273, fp: 1.6278, label 0: tensor(510), label 1: tensor(218) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 52772 dynamic_size: 10 +filter out voxels: 35550 +First batch: fn: 0.0154, fp: 1.6390, label 0: tensor(510), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49283 dynamic_size: 10 +filter out voxels: 33361 +First batch: fn: 0.0108, fp: 1.5342, label 0: tensor(510), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49220 dynamic_size: 10 +filter out voxels: 33102 +First batch: fn: 0.0078, fp: 1.5352, label 0: tensor(510), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45122 dynamic_size: 10 +filter out voxels: 30920 +First batch: fn: 0.0096, fp: 1.4050, label 0: tensor(510), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44448 dynamic_size: 10 +filter out voxels: 30278 +First batch: fn: 0.0073, fp: 1.3862, label 0: tensor(510), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:03.543] dice before refine 0.5175058841705322 and after 0.5961238145828247, label 0: tensor(510, device='cuda:0'), label 1: tensor(84, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +0.23588638278571042 +[22:17:04.426] epoch: 2/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.23588638278571042 stich left and right side (total size): 1 +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:04.851] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(52, device='cuda:0') +num_clicks 10 points_length: 35209 dynamic_size: 10 +filter out voxels: 34398 +First batch: fn: 1.0000, fp: 70.2733, label 0: tensor(59), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46553 dynamic_size: 10 +filter out voxels: 46103 +First batch: fn: 0.8947, fp: 93.3421, label 0: tensor(16), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 52129 dynamic_size: 10 +filter out voxels: 51825 +First batch: fn: 0.5364, fp: 104.9879, label 0: tensor(27), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49570 dynamic_size: 10 +filter out voxels: 49294 +First batch: fn: 0.4777, fp: 99.8664, label 0: tensor(28), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50498 dynamic_size: 10 +filter out voxels: 50287 +First batch: fn: 0.3077, fp: 101.9150, label 0: tensor(39), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48015 dynamic_size: 10 +filter out voxels: 47808 +First batch: fn: 0.2773, fp: 96.9190, label 0: tensor(45), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48718 dynamic_size: 10 +filter out voxels: 48534 +First batch: fn: 0.2024, fp: 98.4170, label 0: tensor(49), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47230 dynamic_size: 10 +filter out voxels: 47056 +First batch: fn: 0.2126, fp: 95.3947, label 0: tensor(37), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47629 dynamic_size: 10 +filter out voxels: 47450 +First batch: fn: 0.1964, fp: 96.2186, label 0: tensor(49), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46097 dynamic_size: 10 +filter out voxels: 45929 +First batch: fn: 0.2085, fp: 93.1053, label 0: tensor(39), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:08.247] dice before refine 0.0 and after 0.016617730259895325, label 0: tensor(39, device='cuda:0'), label 1: tensor(16, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:08.611] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(37, device='cuda:0') +num_clicks 10 points_length: 52444 dynamic_size: 10 +filter out voxels: 51898 +First batch: fn: 1.0000, fp: 105.1619, label 0: tensor(19), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 64072 dynamic_size: 10 +filter out voxels: 63578 +First batch: fn: 1.0000, fp: 128.7004, label 0: tensor(10), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 65982 dynamic_size: 10 +filter out voxels: 65497 +First batch: fn: 0.9818, fp: 132.5850, label 0: tensor(10), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 67057 dynamic_size: 10 +filter out voxels: 66781 +First batch: fn: 0.4919, fp: 135.2510, label 0: tensor(29), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 63654 dynamic_size: 10 +filter out voxels: 63390 +First batch: fn: 0.4656, fp: 128.3887, label 0: tensor(22), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 63813 dynamic_size: 10 +filter out voxels: 63607 +First batch: fn: 0.3300, fp: 128.8462, label 0: tensor(27), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 62362 dynamic_size: 10 +filter out voxels: 62165 +First batch: fn: 0.2996, fp: 125.9393, label 0: tensor(32), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60487 dynamic_size: 10 +filter out voxels: 60287 +First batch: fn: 0.2996, fp: 122.1437, label 0: tensor(41), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 59734 dynamic_size: 10 +filter out voxels: 59553 +First batch: fn: 0.2652, fp: 120.6538, label 0: tensor(37), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60417 dynamic_size: 10 +filter out voxels: 60245 +First batch: fn: 0.2389, fp: 122.0628, label 0: tensor(38), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:11.893] dice before refine 0.0 and after 0.012837143614888191, label 0: tensor(38, device='cuda:0'), label 1: tensor(20, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:12.261] dice before refine 6.225486868061125e-05 and after 0.0073328446596860886, label 0: tensor(0, device='cuda:0'), label 1: tensor(95, device='cuda:0') +num_clicks 10 points_length: 29782 dynamic_size: 10 +filter out voxels: 1759 +First batch: fn: 0.8804, fp: 31.4913, label 0: tensor(510), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34287 dynamic_size: 10 +filter out voxels: 1455 +First batch: fn: 0.2967, fp: 36.9717, label 0: tensor(510), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35155 dynamic_size: 10 +filter out voxels: 1320 +First batch: fn: 0.1880, fp: 38.0239, label 0: tensor(510), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34168 dynamic_size: 10 +filter out voxels: 1208 +First batch: fn: 0.1130, fp: 37.0261, label 0: tensor(510), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33153 dynamic_size: 10 +filter out voxels: 1131 +First batch: fn: 0.0565, fp: 35.9793, label 0: tensor(510), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32643 dynamic_size: 10 +filter out voxels: 1078 +First batch: fn: 0.0522, fp: 35.4293, label 0: tensor(510), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31427 dynamic_size: 10 +filter out voxels: 1027 +First batch: fn: 0.0380, fp: 34.1217, label 0: tensor(510), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31322 dynamic_size: 10 +filter out voxels: 1026 +First batch: fn: 0.0370, fp: 34.0087, label 0: tensor(510), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31086 dynamic_size: 10 +filter out voxels: 994 +First batch: fn: 0.0413, fp: 33.7478, label 0: tensor(510), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30781 dynamic_size: 10 +filter out voxels: 998 +First batch: fn: 0.0435, fp: 33.4141, label 0: tensor(510), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:19.334] dice before refine 5.42578891327139e-05 and after 0.05436542630195618, label 0: tensor(510, device='cuda:0'), label 1: tensor(15, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:19.703] dice before refine 0.0 and after 0.0014380132779479027, label 0: tensor(0, device='cuda:0'), label 1: tensor(116, device='cuda:0') +num_clicks 10 points_length: 36109 dynamic_size: 10 +filter out voxels: 32097 +First batch: fn: 0.9717, fp: 38.2772, label 0: tensor(258), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41837 dynamic_size: 10 +filter out voxels: 38347 +First batch: fn: 0.6228, fp: 44.8522, label 0: tensor(228), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43672 dynamic_size: 10 +filter out voxels: 40786 +First batch: fn: 0.2630, fp: 47.2065, label 0: tensor(246), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43947 dynamic_size: 10 +filter out voxels: 41648 +First batch: fn: 0.1641, fp: 47.6043, label 0: tensor(210), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44174 dynamic_size: 10 +filter out voxels: 42179 +First batch: fn: 0.1250, fp: 47.8902, label 0: tensor(202), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44042 dynamic_size: 10 +filter out voxels: 42583 +First batch: fn: 0.1076, fp: 47.7641, label 0: tensor(191), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44414 dynamic_size: 10 +filter out voxels: 43704 +First batch: fn: 0.1120, fp: 48.1641, label 0: tensor(132), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44447 dynamic_size: 10 +filter out voxels: 44087 +First batch: fn: 0.1174, fp: 48.1946, label 0: tensor(108), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44873 dynamic_size: 10 +filter out voxels: 44561 +First batch: fn: 0.1141, fp: 48.6609, label 0: tensor(94), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45119 dynamic_size: 10 +filter out voxels: 44808 +First batch: fn: 0.1065, fp: 48.9359, label 0: tensor(92), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:24.611] dice before refine 0.0 and after 0.03527260944247246, label 0: tensor(92, device='cuda:0'), label 1: tensor(34, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 838 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:24.978] dice before refine 0.0 and after 0.03368375822901726, label 0: tensor(0, device='cuda:0'), label 1: tensor(133, device='cuda:0') +num_clicks 10 points_length: 18016 dynamic_size: 10 +filter out voxels: 17313 +First batch: fn: 0.6253, fp: 20.8735, label 0: tensor(65), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36473 dynamic_size: 10 +filter out voxels: 35924 +First batch: fn: 0.3759, fp: 43.1480, label 0: tensor(76), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46916 dynamic_size: 10 +filter out voxels: 46507 +First batch: fn: 0.2613, fp: 55.7243, label 0: tensor(73), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50489 dynamic_size: 10 +filter out voxels: 50122 +First batch: fn: 0.2375, fp: 60.0119, label 0: tensor(62), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 51432 dynamic_size: 10 +filter out voxels: 51070 +First batch: fn: 0.2375, fp: 61.1372, label 0: tensor(48), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53474 dynamic_size: 10 +filter out voxels: 53106 +First batch: fn: 0.1229, fp: 63.6885, label 0: tensor(95), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53097 dynamic_size: 10 +filter out voxels: 52747 +First batch: fn: 0.1337, fp: 63.2279, label 0: tensor(89), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53351 dynamic_size: 10 +filter out voxels: 53007 +First batch: fn: 0.1325, fp: 63.5322, label 0: tensor(93), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53169 dynamic_size: 10 +filter out voxels: 52841 +First batch: fn: 0.1384, fp: 63.3091, label 0: tensor(67), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53476 dynamic_size: 10 +filter out voxels: 53152 +First batch: fn: 0.1408, fp: 63.6730, label 0: tensor(75), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:28.805] dice before refine 0.0 and after 0.026054704561829567, label 0: tensor(75, device='cuda:0'), label 1: tensor(30, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 901 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:29.182] dice before refine 0.0 and after 0.02026386372745037, label 0: tensor(0, device='cuda:0'), label 1: tensor(180, device='cuda:0') +num_clicks 10 points_length: 36165 dynamic_size: 10 +filter out voxels: 34756 +First batch: fn: 0.5849, fp: 39.5538, label 0: tensor(203), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43717 dynamic_size: 10 +filter out voxels: 43041 +First batch: fn: 0.3918, fp: 48.1287, label 0: tensor(121), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46642 dynamic_size: 10 +filter out voxels: 46106 +First batch: fn: 0.3196, fp: 51.4473, label 0: tensor(99), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46695 dynamic_size: 10 +filter out voxels: 46217 +First batch: fn: 0.2719, fp: 51.5538, label 0: tensor(133), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45989 dynamic_size: 10 +filter out voxels: 45559 +First batch: fn: 0.2453, fp: 50.7969, label 0: tensor(60), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46566 dynamic_size: 10 +filter out voxels: 46160 +First batch: fn: 0.2131, fp: 51.4695, label 0: tensor(109), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44985 dynamic_size: 10 +filter out voxels: 44586 +First batch: fn: 0.2297, fp: 49.6981, label 0: tensor(74), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45740 dynamic_size: 10 +filter out voxels: 45346 +First batch: fn: 0.2098, fp: 50.5560, label 0: tensor(79), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45816 dynamic_size: 10 +filter out voxels: 45439 +First batch: fn: 0.1842, fp: 50.6659, label 0: tensor(113), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44880 dynamic_size: 10 +filter out voxels: 44511 +First batch: fn: 0.1953, fp: 49.6160, label 0: tensor(76), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:33.533] dice before refine 0.0 and after 0.03106505796313286, label 0: tensor(76, device='cuda:0'), label 1: tensor(43, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1964 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:33.907] dice before refine 0.0009629062260501087 and after 0.026749778538942337, label 0: tensor(0, device='cuda:0'), label 1: tensor(104, device='cuda:0') +num_clicks 10 points_length: 39658 dynamic_size: 10 +filter out voxels: 25719 +First batch: fn: 0.7225, fp: 19.4700, label 0: tensor(510), label 1: tensor(202) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34946 dynamic_size: 10 +filter out voxels: 21513 +First batch: fn: 0.0906, fp: 17.7026, label 0: tensor(510), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32242 dynamic_size: 10 +filter out voxels: 18797 +First batch: fn: 0.0046, fp: 16.4119, label 0: tensor(510), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31352 dynamic_size: 10 +filter out voxels: 17886 +First batch: fn: 0.0000, fp: 15.9633, label 0: tensor(510), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30202 dynamic_size: 10 +filter out voxels: 16984 +First batch: fn: 0.0036, fp: 15.3742, label 0: tensor(510), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29113 dynamic_size: 10 +filter out voxels: 16005 +First batch: fn: 0.0051, fp: 14.8182, label 0: tensor(510), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28449 dynamic_size: 10 +filter out voxels: 15392 +First batch: fn: 0.0061, fp: 14.4791, label 0: tensor(510), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28050 dynamic_size: 10 +filter out voxels: 15161 +First batch: fn: 0.0041, fp: 14.2780, label 0: tensor(510), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27772 dynamic_size: 10 +filter out voxels: 15124 +First batch: fn: 0.0071, fp: 14.1334, label 0: tensor(510), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27856 dynamic_size: 10 +filter out voxels: 15320 +First batch: fn: 0.0056, fp: 14.1777, label 0: tensor(510), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:40.667] dice before refine 0.002359693869948387 and after 0.12393325567245483, label 0: tensor(510, device='cuda:0'), label 1: tensor(10, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2027 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:41.067] dice before refine 0.0 and after 0.007800539489835501, label 0: tensor(0, device='cuda:0'), label 1: tensor(107, device='cuda:0') +num_clicks 10 points_length: 27220 dynamic_size: 10 +filter out voxels: 14258 +First batch: fn: 0.9472, fp: 12.4815, label 0: tensor(509), label 1: tensor(228) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39160 dynamic_size: 10 +filter out voxels: 21742 +First batch: fn: 0.2847, fp: 19.0345, label 0: tensor(510), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41677 dynamic_size: 10 +filter out voxels: 23939 +First batch: fn: 0.1090, fp: 20.4519, label 0: tensor(510), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39655 dynamic_size: 10 +filter out voxels: 23514 +First batch: fn: 0.0671, fp: 19.4963, label 0: tensor(510), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33238 dynamic_size: 10 +filter out voxels: 20319 +First batch: fn: 0.0607, fp: 16.3370, label 0: tensor(510), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31379 dynamic_size: 10 +filter out voxels: 20239 +First batch: fn: 0.0513, fp: 15.4292, label 0: tensor(510), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28398 dynamic_size: 10 +filter out voxels: 18917 +First batch: fn: 0.0553, fp: 13.9546, label 0: tensor(510), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26184 dynamic_size: 10 +filter out voxels: 19017 +First batch: fn: 0.0701, fp: 12.8476, label 0: tensor(510), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26578 dynamic_size: 10 +filter out voxels: 21140 +First batch: fn: 0.0681, fp: 13.0439, label 0: tensor(510), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27195 dynamic_size: 10 +filter out voxels: 22635 +First batch: fn: 0.0557, fp: 13.3606, label 0: tensor(510), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:48.413] dice before refine 0.0 and after 0.14352178573608398, label 0: tensor(510, device='cuda:0'), label 1: tensor(25, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.0370010509875349 +[22:17:49.065] epoch: 2/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.0370010509875349 stich left and right side (total size): 1 +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:49.545] dice before refine 0.060813892632722855 and after 0.14110177755355835, label 0: tensor(0, device='cuda:0'), label 1: tensor(514, device='cuda:0') +num_clicks 10 points_length: 58716 dynamic_size: 10 +filter out voxels: 36734 +First batch: fn: 0.3391, fp: 7.7064, label 0: tensor(509), label 1: tensor(418) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60180 dynamic_size: 10 +filter out voxels: 38559 +First batch: fn: 0.1469, fp: 8.0992, label 0: tensor(509), label 1: tensor(182) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 57374 dynamic_size: 10 +filter out voxels: 38044 +First batch: fn: 0.0961, fp: 7.7656, label 0: tensor(510), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 57579 dynamic_size: 10 +filter out voxels: 39043 +First batch: fn: 0.0808, fp: 7.8089, label 0: tensor(508), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 54877 dynamic_size: 10 +filter out voxels: 38326 +First batch: fn: 0.0728, fp: 7.4467, label 0: tensor(510), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 51906 dynamic_size: 10 +filter out voxels: 38403 +First batch: fn: 0.0645, fp: 7.0478, label 0: tensor(510), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 51365 dynamic_size: 10 +filter out voxels: 38981 +First batch: fn: 0.0588, fp: 6.9794, label 0: tensor(510), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48501 dynamic_size: 10 +filter out voxels: 38029 +First batch: fn: 0.0558, fp: 6.5900, label 0: tensor(510), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47365 dynamic_size: 10 +filter out voxels: 38096 +First batch: fn: 0.0551, fp: 6.4351, label 0: tensor(509), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47021 dynamic_size: 10 +filter out voxels: 38290 +First batch: fn: 0.0588, fp: 6.3842, label 0: tensor(509), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:57.543] dice before refine 0.10431903600692749 and after 0.22657513618469238, label 0: tensor(509, device='cuda:0'), label 1: tensor(61, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:17:57.971] dice before refine 0.07748982310295105 and after 0.14767178893089294, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 61100 dynamic_size: 10 +filter out voxels: 32218 +First batch: fn: 0.2747, fp: 8.0974, label 0: tensor(510), label 1: tensor(264) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 68709 dynamic_size: 10 +filter out voxels: 36696 +First batch: fn: 0.1488, fp: 9.2660, label 0: tensor(509), label 1: tensor(156) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 67368 dynamic_size: 10 +filter out voxels: 36461 +First batch: fn: 0.0961, fp: 9.1350, label 0: tensor(510), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 62893 dynamic_size: 10 +filter out voxels: 34501 +First batch: fn: 0.0769, fp: 8.5410, label 0: tensor(510), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 65961 dynamic_size: 10 +filter out voxels: 36826 +First batch: fn: 0.0665, fp: 8.9718, label 0: tensor(510), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 65759 dynamic_size: 10 +filter out voxels: 37271 +First batch: fn: 0.0634, fp: 8.9471, label 0: tensor(510), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 66797 dynamic_size: 10 +filter out voxels: 38655 +First batch: fn: 0.0610, fp: 9.0918, label 0: tensor(510), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 61769 dynamic_size: 10 +filter out voxels: 36490 +First batch: fn: 0.0600, fp: 8.4038, label 0: tensor(510), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 64665 dynamic_size: 10 +filter out voxels: 38852 +First batch: fn: 0.0612, fp: 8.7994, label 0: tensor(510), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60982 dynamic_size: 10 +filter out voxels: 37158 +First batch: fn: 0.0559, fp: 8.3001, label 0: tensor(510), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:06.011] dice before refine 0.0924883782863617 and after 0.1775587648153305, label 0: tensor(510, device='cuda:0'), label 1: tensor(55, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(403) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:06.436] dice before refine 0.014969874173402786 and after 0.1621638834476471, label 0: tensor(0, device='cuda:0'), label 1: tensor(403, device='cuda:0') +num_clicks 10 points_length: 26360 dynamic_size: 10 +filter out voxels: 13390 +First batch: fn: 0.6402, fp: 3.0777, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27638 dynamic_size: 10 +filter out voxels: 13880 +First batch: fn: 0.2787, fp: 3.6195, label 0: tensor(510), label 1: tensor(222) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25807 dynamic_size: 10 +filter out voxels: 12355 +First batch: fn: 0.1733, fp: 3.4666, label 0: tensor(508), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24894 dynamic_size: 10 +filter out voxels: 12169 +First batch: fn: 0.1464, fp: 3.3647, label 0: tensor(509), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24080 dynamic_size: 10 +filter out voxels: 12059 +First batch: fn: 0.1240, fp: 3.2724, label 0: tensor(510), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23605 dynamic_size: 10 +filter out voxels: 11696 +First batch: fn: 0.1189, fp: 3.2104, label 0: tensor(510), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23426 dynamic_size: 10 +filter out voxels: 11704 +First batch: fn: 0.1144, fp: 3.1897, label 0: tensor(509), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22997 dynamic_size: 10 +filter out voxels: 11734 +First batch: fn: 0.1100, fp: 3.1336, label 0: tensor(509), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22819 dynamic_size: 10 +filter out voxels: 12145 +First batch: fn: 0.0993, fp: 3.1192, label 0: tensor(510), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21713 dynamic_size: 10 +filter out voxels: 12157 +First batch: fn: 0.0828, fp: 2.9797, label 0: tensor(510), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:14.549] dice before refine 0.1214369609951973 and after 0.38033515214920044, label 0: tensor(510, device='cuda:0'), label 1: tensor(90, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(342) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:14.968] dice before refine 0.013700034469366074 and after 0.03921642154455185, label 0: tensor(0, device='cuda:0'), label 1: tensor(342, device='cuda:0') +num_clicks 10 points_length: 51204 dynamic_size: 10 +filter out voxels: 20468 +First batch: fn: 0.8526, fp: 6.3694, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 52803 dynamic_size: 10 +filter out voxels: 25521 +First batch: fn: 0.5743, fp: 6.8732, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50331 dynamic_size: 10 +filter out voxels: 25786 +First batch: fn: 0.2409, fp: 6.8580, label 0: tensor(510), label 1: tensor(182) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48145 dynamic_size: 10 +filter out voxels: 24778 +First batch: fn: 0.1777, fp: 6.6128, label 0: tensor(510), label 1: tensor(164) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46945 dynamic_size: 10 +filter out voxels: 24669 +First batch: fn: 0.1461, fp: 6.4752, label 0: tensor(510), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45732 dynamic_size: 10 +filter out voxels: 24334 +First batch: fn: 0.1292, fp: 6.3210, label 0: tensor(510), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44496 dynamic_size: 10 +filter out voxels: 24555 +First batch: fn: 0.1094, fp: 6.1664, label 0: tensor(510), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43206 dynamic_size: 10 +filter out voxels: 24687 +First batch: fn: 0.0997, fp: 5.9942, label 0: tensor(510), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41802 dynamic_size: 10 +filter out voxels: 24476 +First batch: fn: 0.0921, fp: 5.8038, label 0: tensor(510), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40781 dynamic_size: 10 +filter out voxels: 24277 +First batch: fn: 0.0835, fp: 5.6684, label 0: tensor(510), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:23.693] dice before refine 0.062162257730960846 and after 0.2373483031988144, label 0: tensor(510, device='cuda:0'), label 1: tensor(91, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 36954 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:24.229] dice before refine 0.5551888346672058 and after 0.5351864695549011, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 37523 dynamic_size: 10 +filter out voxels: 337 +First batch: fn: 0.4154, fp: 0.6000, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38173 dynamic_size: 10 +filter out voxels: 77 +First batch: fn: 0.3488, fp: 0.6842, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36709 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.2618, fp: 0.7315, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34568 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.2040, fp: 0.7314, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32839 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.1522, fp: 0.7365, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31285 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.1131, fp: 0.7335, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30317 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.0872, fp: 0.7332, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29001 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.0652, fp: 0.7195, label 0: tensor(509), label 1: tensor(444) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26859 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.0579, fp: 0.6689, label 0: tensor(510), label 1: tensor(386) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25565 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.0438, fp: 0.6480, label 0: tensor(509), label 1: tensor(360) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:35.707] dice before refine 0.6054762601852417 and after 0.7407770156860352, label 0: tensor(509, device='cuda:0'), label 1: tensor(360, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 35104 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:36.255] dice before refine 0.5081302523612976 and after 0.5360738039016724, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 35392 dynamic_size: 10 +filter out voxels: 119 +First batch: fn: 0.4175, fp: 0.5907, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37589 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3708, fp: 0.7000, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36321 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3027, fp: 0.7319, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34710 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2515, fp: 0.7372, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33124 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.1943, fp: 0.7493, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31254 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.1466, fp: 0.7437, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29127 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.0984, fp: 0.7314, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27657 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.0637, fp: 0.7242, label 0: tensor(510), label 1: tensor(395) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26069 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.0467, fp: 0.6959, label 0: tensor(510), label 1: tensor(324) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23918 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.0414, fp: 0.6400, label 0: tensor(509), label 1: tensor(318) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:47.355] dice before refine 0.5581827759742737 and after 0.7424253821372986, label 0: tensor(509, device='cuda:0'), label 1: tensor(318, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26886 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:47.877] dice before refine 0.27989888191223145 and after 0.30860063433647156, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 54102 dynamic_size: 10 +filter out voxels: 33 +First batch: fn: 0.5509, fp: 1.4614, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56022 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3774, fp: 1.7063, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 55421 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2823, fp: 1.7790, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53506 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2089, fp: 1.7812, label 0: tensor(510), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 51600 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1418, fp: 1.7774, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49570 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0948, fp: 1.7489, label 0: tensor(510), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48000 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0580, fp: 1.7273, label 0: tensor(510), label 1: tensor(356) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47439 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0447, fp: 1.7197, label 0: tensor(510), label 1: tensor(259) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46749 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0380, fp: 1.7007, label 0: tensor(509), label 1: tensor(240) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46307 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0349, fp: 1.6874, label 0: tensor(509), label 1: tensor(219) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:59.129] dice before refine 0.37595173716545105 and after 0.5316106081008911, label 0: tensor(509, device='cuda:0'), label 1: tensor(219, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:18:59.651] dice before refine 0.25804123282432556 and after 0.29298144578933716, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 53259 dynamic_size: 10 +filter out voxels: 70 +First batch: fn: 0.5797, fp: 1.4491, label 0: tensor(510), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53461 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.4467, fp: 1.5898, label 0: tensor(510), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 51666 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3767, fp: 1.5914, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50304 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3076, fp: 1.6086, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47887 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2344, fp: 1.5897, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45787 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1480, fp: 1.5962, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43703 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0995, fp: 1.5653, label 0: tensor(509), label 1: tensor(459) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42244 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0663, fp: 1.5429, label 0: tensor(509), label 1: tensor(379) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41437 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0486, fp: 1.5298, label 0: tensor(510), label 1: tensor(310) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40160 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0445, fp: 1.4853, label 0: tensor(510), label 1: tensor(296) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:11.027] dice before refine 0.3635171353816986 and after 0.5601929426193237, label 0: tensor(510, device='cuda:0'), label 1: tensor(296, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.31358903781934216 +[22:19:11.599] epoch: 2/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.31358903781934216 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:12.104] dice before refine 0.3741581439971924 and after 0.45207956433296204, label 0: tensor(0, device='cuda:0'), label 1: tensor(136, device='cuda:0') +num_clicks 10 points_length: 7272 dynamic_size: 10 +filter out voxels: 4683 +First batch: fn: 0.0434, fp: 2.2755, label 0: tensor(376), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5197 dynamic_size: 10 +filter out voxels: 2880 +First batch: fn: 0.0156, fp: 1.6416, label 0: tensor(485), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3992 dynamic_size: 10 +filter out voxels: 2315 +First batch: fn: 0.0102, fp: 1.2628, label 0: tensor(313), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3798 dynamic_size: 10 +filter out voxels: 2350 +First batch: fn: 0.0115, fp: 1.1996, label 0: tensor(235), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3665 dynamic_size: 10 +filter out voxels: 2349 +First batch: fn: 0.0143, fp: 1.1543, label 0: tensor(216), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3691 dynamic_size: 10 +filter out voxels: 2433 +First batch: fn: 0.0156, fp: 1.1614, label 0: tensor(312), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3499 dynamic_size: 10 +filter out voxels: 2365 +First batch: fn: 0.0214, fp: 1.0944, label 0: tensor(197), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3654 dynamic_size: 10 +filter out voxels: 2520 +First batch: fn: 0.0182, fp: 1.1470, label 0: tensor(221), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3458 dynamic_size: 10 +filter out voxels: 2382 +First batch: fn: 0.0226, fp: 1.0800, label 0: tensor(162), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3731 dynamic_size: 10 +filter out voxels: 2614 +First batch: fn: 0.0182, fp: 1.1716, label 0: tensor(223), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:17.242] dice before refine 0.4802331030368805 and after 0.630713939666748, label 0: tensor(223, device='cuda:0'), label 1: tensor(28, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:17.621] dice before refine 0.47467106580734253 and after 0.48531100153923035, label 0: tensor(0, device='cuda:0'), label 1: tensor(118, device='cuda:0') +num_clicks 10 points_length: 6272 dynamic_size: 10 +filter out voxels: 4029 +First batch: fn: 0.0571, fp: 1.9429, label 0: tensor(461), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7274 dynamic_size: 10 +filter out voxels: 5656 +First batch: fn: 0.0293, fp: 2.2902, label 0: tensor(308), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8599 dynamic_size: 10 +filter out voxels: 7407 +First batch: fn: 0.0316, fp: 2.7105, label 0: tensor(146), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12078 dynamic_size: 10 +filter out voxels: 10940 +First batch: fn: 0.0255, fp: 3.8259, label 0: tensor(160), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14628 dynamic_size: 10 +filter out voxels: 13581 +First batch: fn: 0.0268, fp: 4.6378, label 0: tensor(181), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19782 dynamic_size: 10 +filter out voxels: 18821 +First batch: fn: 0.0306, fp: 6.2774, label 0: tensor(201), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24529 dynamic_size: 10 +filter out voxels: 23626 +First batch: fn: 0.0344, fp: 7.7873, label 0: tensor(221), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26141 dynamic_size: 10 +filter out voxels: 25290 +First batch: fn: 0.0312, fp: 8.3045, label 0: tensor(179), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26419 dynamic_size: 10 +filter out voxels: 25579 +First batch: fn: 0.0297, fp: 8.3948, label 0: tensor(188), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27148 dynamic_size: 10 +filter out voxels: 26302 +First batch: fn: 0.0290, fp: 8.6279, label 0: tensor(158), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:22.674] dice before refine 0.170624241232872 and after 0.18253658711910248, label 0: tensor(158, device='cuda:0'), label 1: tensor(45, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:23.053] dice before refine 0.36868003010749817 and after 0.4274022877216339, label 0: tensor(0, device='cuda:0'), label 1: tensor(144, device='cuda:0') +num_clicks 10 points_length: 8116 dynamic_size: 10 +filter out voxels: 5155 +First batch: fn: 0.0341, fp: 2.5539, label 0: tensor(470), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9683 dynamic_size: 10 +filter out voxels: 6412 +First batch: fn: 0.0064, fp: 3.0813, label 0: tensor(526), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10604 dynamic_size: 10 +filter out voxels: 8185 +First batch: fn: 0.0057, fp: 3.3756, label 0: tensor(461), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10243 dynamic_size: 10 +filter out voxels: 8407 +First batch: fn: 0.0083, fp: 3.2580, label 0: tensor(269), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10218 dynamic_size: 10 +filter out voxels: 8558 +First batch: fn: 0.0112, fp: 3.2471, label 0: tensor(293), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10276 dynamic_size: 10 +filter out voxels: 8696 +First batch: fn: 0.0179, fp: 3.2589, label 0: tensor(279), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10659 dynamic_size: 10 +filter out voxels: 9101 +First batch: fn: 0.0147, fp: 3.3842, label 0: tensor(314), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10744 dynamic_size: 10 +filter out voxels: 9259 +First batch: fn: 0.0188, fp: 3.4072, label 0: tensor(238), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10841 dynamic_size: 10 +filter out voxels: 9418 +First batch: fn: 0.0156, fp: 3.4413, label 0: tensor(300), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10857 dynamic_size: 10 +filter out voxels: 9491 +First batch: fn: 0.0188, fp: 3.4432, label 0: tensor(180), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:28.610] dice before refine 0.2939428687095642 and after 0.3569355905056, label 0: tensor(180, device='cuda:0'), label 1: tensor(27, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:28.993] dice before refine 0.4227124750614166 and after 0.4929131269454956, label 0: tensor(0, device='cuda:0'), label 1: tensor(153, device='cuda:0') +num_clicks 10 points_length: 6082 dynamic_size: 10 +filter out voxels: 3595 +First batch: fn: 0.0574, fp: 1.8820, label 0: tensor(319), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5293 dynamic_size: 10 +filter out voxels: 2851 +First batch: fn: 0.0223, fp: 1.6655, label 0: tensor(544), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3803 dynamic_size: 10 +filter out voxels: 2257 +First batch: fn: 0.0179, fp: 1.1948, label 0: tensor(254), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3152 dynamic_size: 10 +filter out voxels: 1835 +First batch: fn: 0.0156, fp: 0.9895, label 0: tensor(280), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2931 dynamic_size: 10 +filter out voxels: 1788 +First batch: fn: 0.0201, fp: 0.9145, label 0: tensor(198), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2312 dynamic_size: 10 +filter out voxels: 1232 +First batch: fn: 0.0210, fp: 0.7162, label 0: tensor(205), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2394 dynamic_size: 10 +filter out voxels: 1359 +First batch: fn: 0.0223, fp: 0.7411, label 0: tensor(229), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2476 dynamic_size: 10 +filter out voxels: 1448 +First batch: fn: 0.0226, fp: 0.7669, label 0: tensor(247), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2204 dynamic_size: 10 +filter out voxels: 1229 +First batch: fn: 0.0236, fp: 0.6792, label 0: tensor(117), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2517 dynamic_size: 10 +filter out voxels: 1533 +First batch: fn: 0.0214, fp: 0.7812, label 0: tensor(183), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:34.098] dice before refine 0.4992290437221527 and after 0.7246479988098145, label 0: tensor(183, device='cuda:0'), label 1: tensor(36, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.3178921775384383 +[22:19:34.529] epoch: 2/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.3178921775384383 stich left and right side (total size): 1 +num_clicks 10 points_length: 19676 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:35.064] dice before refine 6.114711868576705e-05 and after 0.0036419543903321028, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 91375 dynamic_size: 10 +filter out voxels: 66293 +First batch: fn: 0.9915, fp: 3.6525, label 0: tensor(552), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 100434 dynamic_size: 10 +filter out voxels: 73774 +First batch: fn: 0.9960, fp: 4.1084, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 104256 dynamic_size: 10 +filter out voxels: 78226 +First batch: fn: 0.9504, fp: 4.3482, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 103245 dynamic_size: 10 +filter out voxels: 78702 +First batch: fn: 0.8908, fp: 4.3564, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 101547 dynamic_size: 10 +filter out voxels: 78428 +First batch: fn: 0.8242, fp: 4.3368, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 99353 dynamic_size: 10 +filter out voxels: 77467 +First batch: fn: 0.7714, fp: 4.2781, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 96012 dynamic_size: 10 +filter out voxels: 76330 +First batch: fn: 0.6688, fp: 4.2108, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 93652 dynamic_size: 10 +filter out voxels: 75885 +First batch: fn: 0.5797, fp: 4.1800, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 92275 dynamic_size: 10 +filter out voxels: 75980 +First batch: fn: 0.5082, fp: 4.1815, label 0: tensor(535), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 90045 dynamic_size: 10 +filter out voxels: 75301 +First batch: fn: 0.4325, fp: 4.1439, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:45.799] dice before refine 0.014792140573263168 and after 0.21832682192325592, label 0: tensor(509, device='cuda:0'), label 1: tensor(501, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 30548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:46.326] dice before refine 0.01810012385249138 and after 0.01916050724685192, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 92348 dynamic_size: 10 +filter out voxels: 58914 +First batch: fn: 0.9705, fp: 2.0526, label 0: tensor(475), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 95536 dynamic_size: 10 +filter out voxels: 63156 +First batch: fn: 0.9324, fp: 2.1950, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 93541 dynamic_size: 10 +filter out voxels: 63293 +First batch: fn: 0.8659, fp: 2.1962, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 91873 dynamic_size: 10 +filter out voxels: 63264 +First batch: fn: 0.8145, fp: 2.1930, label 0: tensor(505), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 89744 dynamic_size: 10 +filter out voxels: 62896 +First batch: fn: 0.7677, fp: 2.1701, label 0: tensor(546), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 87183 dynamic_size: 10 +filter out voxels: 62348 +First batch: fn: 0.7031, fp: 2.1508, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 84723 dynamic_size: 10 +filter out voxels: 62162 +First batch: fn: 0.6307, fp: 2.1427, label 0: tensor(479), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 81836 dynamic_size: 10 +filter out voxels: 61597 +First batch: fn: 0.5574, fp: 2.1216, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 80225 dynamic_size: 10 +filter out voxels: 61106 +First batch: fn: 0.5259, fp: 2.1003, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 78946 dynamic_size: 10 +filter out voxels: 60729 +First batch: fn: 0.4990, fp: 2.0853, label 0: tensor(518), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:57.234] dice before refine 0.07785524427890778 and after 0.300552099943161, label 0: tensor(518, device='cuda:0'), label 1: tensor(500, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 23425 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:19:57.698] dice before refine 0.47483202815055847 and after 0.48237866163253784, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 38334 dynamic_size: 10 +filter out voxels: 2968 +First batch: fn: 0.2375, fp: 1.3990, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35151 dynamic_size: 10 +filter out voxels: 2922 +First batch: fn: 0.1116, fp: 1.3889, label 0: tensor(510), label 1: tensor(402) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32749 dynamic_size: 10 +filter out voxels: 2868 +First batch: fn: 0.0501, fp: 1.3479, label 0: tensor(508), label 1: tensor(224) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28906 dynamic_size: 10 +filter out voxels: 2598 +First batch: fn: 0.0320, fp: 1.2020, label 0: tensor(510), label 1: tensor(220) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27841 dynamic_size: 10 +filter out voxels: 2319 +First batch: fn: 0.0179, fp: 1.1706, label 0: tensor(509), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25245 dynamic_size: 10 +filter out voxels: 1814 +First batch: fn: 0.0147, fp: 1.0630, label 0: tensor(510), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23962 dynamic_size: 10 +filter out voxels: 1610 +First batch: fn: 0.0167, fp: 1.0062, label 0: tensor(510), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23133 dynamic_size: 10 +filter out voxels: 1689 +First batch: fn: 0.0131, fp: 0.9744, label 0: tensor(510), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21557 dynamic_size: 10 +filter out voxels: 1569 +First batch: fn: 0.0131, fp: 0.9072, label 0: tensor(509), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21436 dynamic_size: 10 +filter out voxels: 1624 +First batch: fn: 0.0121, fp: 0.9030, label 0: tensor(510), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:20:06.647] dice before refine 0.5920822620391846 and after 0.6959254145622253, label 0: tensor(510, device='cuda:0'), label 1: tensor(97, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25823 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:20:07.125] dice before refine 0.5487136840820312 and after 0.5578064322471619, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 32786 dynamic_size: 10 +filter out voxels: 433 +First batch: fn: 0.1992, fp: 1.0704, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30274 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0992, fp: 1.0732, label 0: tensor(509), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27708 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0386, fp: 1.0344, label 0: tensor(509), label 1: tensor(301) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25111 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0185, fp: 0.9540, label 0: tensor(510), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23348 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0133, fp: 0.8909, label 0: tensor(510), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22219 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0115, fp: 0.8489, label 0: tensor(508), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20579 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0108, fp: 0.7861, label 0: tensor(510), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20160 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0112, fp: 0.7695, label 0: tensor(510), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19460 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0105, fp: 0.7431, label 0: tensor(510), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18107 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0108, fp: 0.6904, label 0: tensor(510), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:20:16.474] dice before refine 0.656020998954773 and after 0.7434359788894653, label 0: tensor(510, device='cuda:0'), label 1: tensor(103, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 69252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:20:17.057] dice before refine 0.571658730506897 and after 0.5567623972892761, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 61825 dynamic_size: 10 +filter out voxels: 3095 +First batch: fn: 0.4393, fp: 0.4535, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60669 dynamic_size: 10 +filter out voxels: 3421 +First batch: fn: 0.3543, fp: 0.5217, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60304 dynamic_size: 10 +filter out voxels: 3700 +First batch: fn: 0.3386, fp: 0.5322, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 57819 dynamic_size: 10 +filter out voxels: 3748 +First batch: fn: 0.3140, fp: 0.5209, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 54028 dynamic_size: 10 +filter out voxels: 3756 +First batch: fn: 0.2735, fp: 0.5067, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50158 dynamic_size: 10 +filter out voxels: 3671 +First batch: fn: 0.2317, fp: 0.4926, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47413 dynamic_size: 10 +filter out voxels: 3616 +First batch: fn: 0.2121, fp: 0.4726, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45643 dynamic_size: 10 +filter out voxels: 3580 +First batch: fn: 0.1968, fp: 0.4623, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42985 dynamic_size: 10 +filter out voxels: 3567 +First batch: fn: 0.1605, fp: 0.4602, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40233 dynamic_size: 10 +filter out voxels: 3424 +First batch: fn: 0.1388, fp: 0.4422, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:20:28.749] dice before refine 0.6457977890968323 and after 0.7575938701629639, label 0: tensor(507, device='cuda:0'), label 1: tensor(503, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 92139 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:20:29.363] dice before refine 0.6933335065841675 and after 0.6794242262840271, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 54009 dynamic_size: 10 +filter out voxels: 110 +First batch: fn: 0.3788, fp: 0.2073, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48692 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.3277, fp: 0.2008, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47035 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3210, fp: 0.1895, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44250 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2950, fp: 0.1853, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41329 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2763, fp: 0.1722, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38400 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2469, fp: 0.1699, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36655 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2334, fp: 0.1645, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34981 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2203, fp: 0.1594, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33676 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2102, fp: 0.1553, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32208 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2019, fp: 0.1476, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:20:41.014] dice before refine 0.7493940591812134 and after 0.8276007771492004, label 0: tensor(506, device='cuda:0'), label 1: tensor(504, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 10350 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:20:41.464] dice before refine 0.10201063752174377 and after 0.15295027196407318, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 58039 dynamic_size: 10 +filter out voxels: 18681 +First batch: fn: 0.4937, fp: 5.1139, label 0: tensor(510), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60858 dynamic_size: 10 +filter out voxels: 13651 +First batch: fn: 0.2521, fp: 5.6279, label 0: tensor(510), label 1: tensor(433) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 62175 dynamic_size: 10 +filter out voxels: 11653 +First batch: fn: 0.1181, fp: 5.8892, label 0: tensor(510), label 1: tensor(222) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 61888 dynamic_size: 10 +filter out voxels: 10292 +First batch: fn: 0.0794, fp: 5.9001, label 0: tensor(510), label 1: tensor(165) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60785 dynamic_size: 10 +filter out voxels: 9393 +First batch: fn: 0.0614, fp: 5.8115, label 0: tensor(510), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60937 dynamic_size: 10 +filter out voxels: 8881 +First batch: fn: 0.0539, fp: 5.8337, label 0: tensor(510), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60078 dynamic_size: 10 +filter out voxels: 8737 +First batch: fn: 0.0514, fp: 5.7532, label 0: tensor(509), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58647 dynamic_size: 10 +filter out voxels: 8557 +First batch: fn: 0.0470, fp: 5.6194, label 0: tensor(509), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58385 dynamic_size: 10 +filter out voxels: 8633 +First batch: fn: 0.0507, fp: 5.5903, label 0: tensor(510), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58939 dynamic_size: 10 +filter out voxels: 8703 +First batch: fn: 0.0485, fp: 5.6461, label 0: tensor(510), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:20:50.655] dice before refine 0.1308002918958664 and after 0.25553661584854126, label 0: tensor(510, device='cuda:0'), label 1: tensor(111, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 9566 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:20:51.109] dice before refine 0.09723774343729019 and after 0.24833081662654877, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 20377 dynamic_size: 10 +filter out voxels: 8728 +First batch: fn: 0.6481, fp: 1.4820, label 0: tensor(516), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20405 dynamic_size: 10 +filter out voxels: 11160 +First batch: fn: 0.3650, fp: 1.7680, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20182 dynamic_size: 10 +filter out voxels: 11718 +First batch: fn: 0.1489, fp: 1.9609, label 0: tensor(510), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18792 dynamic_size: 10 +filter out voxels: 10972 +First batch: fn: 0.1034, fp: 1.8611, label 0: tensor(508), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17737 dynamic_size: 10 +filter out voxels: 10615 +First batch: fn: 0.0831, fp: 1.7711, label 0: tensor(510), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16110 dynamic_size: 10 +filter out voxels: 9958 +First batch: fn: 0.0720, fp: 1.6121, label 0: tensor(509), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16272 dynamic_size: 10 +filter out voxels: 10500 +First batch: fn: 0.0616, fp: 1.6395, label 0: tensor(509), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15370 dynamic_size: 10 +filter out voxels: 10192 +First batch: fn: 0.0630, fp: 1.5437, label 0: tensor(510), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14613 dynamic_size: 10 +filter out voxels: 9970 +First batch: fn: 0.0596, fp: 1.4680, label 0: tensor(508), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13669 dynamic_size: 10 +filter out voxels: 9442 +First batch: fn: 0.0524, fp: 1.3765, label 0: tensor(510), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:20:59.477] dice before refine 0.326241135597229 and after 0.569000780582428, label 0: tensor(510, device='cuda:0'), label 1: tensor(79, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.5186592557213523 +[22:21:00.019] epoch: 2/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.5186592557213523 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:21:00.558] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(19, device='cuda:0') +num_clicks 10 points_length: 30962 dynamic_size: 10 +filter out voxels: 30834 +First batch: fn: 1.0000, fp: 240.8906, label 0: tensor(10), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35812 dynamic_size: 10 +filter out voxels: 35684 +First batch: fn: 1.0000, fp: 278.7812, label 0: tensor(9), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35875 dynamic_size: 10 +filter out voxels: 35766 +First batch: fn: 0.6953, fp: 279.5781, label 0: tensor(22), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35542 dynamic_size: 10 +filter out voxels: 35418 +First batch: fn: 0.5859, fp: 277.0859, label 0: tensor(20), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34511 dynamic_size: 10 +filter out voxels: 34404 +First batch: fn: 0.6641, fp: 268.9531, label 0: tensor(20), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35598 dynamic_size: 10 +filter out voxels: 35458 +First batch: fn: 0.4609, fp: 277.6484, label 0: tensor(25), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35516 dynamic_size: 10 +filter out voxels: 35381 +First batch: fn: 0.5391, fp: 276.9297, label 0: tensor(18), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35931 dynamic_size: 10 +filter out voxels: 35774 +First batch: fn: 0.3984, fp: 280.3125, label 0: tensor(19), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36399 dynamic_size: 10 +filter out voxels: 36170 +First batch: fn: 0.2344, fp: 284.1328, label 0: tensor(53), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34131 dynamic_size: 10 +filter out voxels: 33993 +First batch: fn: 0.4453, fp: 266.2031, label 0: tensor(18), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:21:03.611] dice before refine 0.0 and after 0.004777379799634218, label 0: tensor(18, device='cuda:0'), label 1: tensor(22, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:21:03.966] dice before refine 9.883864549919963e-05 and after 0.003683241317048669, label 0: tensor(0, device='cuda:0'), label 1: tensor(21, device='cuda:0') +num_clicks 10 points_length: 18394 dynamic_size: 10 +filter out voxels: 18280 +First batch: fn: 0.7344, fp: 142.9688, label 0: tensor(16), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25416 dynamic_size: 10 +filter out voxels: 25266 +First batch: fn: 0.5469, fp: 198.0156, label 0: tensor(20), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27786 dynamic_size: 10 +filter out voxels: 27652 +First batch: fn: 0.5859, fp: 216.4922, label 0: tensor(23), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28149 dynamic_size: 10 +filter out voxels: 27911 +First batch: fn: 0.3438, fp: 219.5703, label 0: tensor(41), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27122 dynamic_size: 10 +filter out voxels: 26870 +First batch: fn: 0.2969, fp: 211.5938, label 0: tensor(37), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27860 dynamic_size: 10 +filter out voxels: 27621 +First batch: fn: 0.2812, fp: 217.3750, label 0: tensor(39), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28003 dynamic_size: 10 +filter out voxels: 27786 +First batch: fn: 0.3047, fp: 218.4688, label 0: tensor(28), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26628 dynamic_size: 10 +filter out voxels: 26461 +First batch: fn: 0.3828, fp: 207.6484, label 0: tensor(47), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28023 dynamic_size: 10 +filter out voxels: 27878 +First batch: fn: 0.3984, fp: 218.5312, label 0: tensor(24), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28402 dynamic_size: 10 +filter out voxels: 28251 +First batch: fn: 0.3750, fp: 221.5156, label 0: tensor(22), label 1: tensor(4) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:21:07.090] dice before refine 0.0 and after 0.005615519359707832, label 0: tensor(22, device='cuda:0'), label 1: tensor(4, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.005455594636838545 +[22:21:07.587] epoch: 2/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.005455594636838545 stich left and right side (total size): 1 +[22:21:07.588] - Val metrics mean dice: 0.21231616166235553 +Checkpoint Directory exists! +[22:21:08.206] - Val metrics best mean dice: 0.23287467283681648 at epoch 1 +num_clicks 50 points_length: 25239 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(407) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4735667407512665 and after 0.49172261357307434 +num_clicks 50 points_length: 47658 dynamic_size: 46 +filter out voxels: 20097 +filter out voxels: 12479 +First batch: fn: 0.2518, fp: 1.6364, label 0: tensor(542), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4888470470905304 and after 0.527152419090271 +num_clicks 50 points_length: 53998 dynamic_size: 39 +filter out voxels: 23243 +filter out voxels: 8898 +First batch: fn: 0.1252, fp: 2.0143, label 0: tensor(537), label 1: tensor(479) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5000138282775879 and after 0.5560054183006287 +num_clicks 50 points_length: 52363 dynamic_size: 34 +filter out voxels: 23726 +filter out voxels: 7280 +First batch: fn: 0.0376, fp: 2.0371, label 0: tensor(531), label 1: tensor(192) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5157046318054199 and after 0.5777835845947266 +num_clicks 50 points_length: 48307 dynamic_size: 26 +filter out voxels: 22632 +filter out voxels: 6876 +First batch: fn: 0.0171, fp: 1.8969, label 0: tensor(525), label 1: tensor(182) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5217137336730957 and after 0.5881645679473877 +num_clicks 50 points_length: 46591 dynamic_size: 47 +filter out voxels: 22027 +filter out voxels: 6735 +First batch: fn: 0.0057, fp: 1.8403, label 0: tensor(547), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5310556888580322 and after 0.6067503690719604 +num_clicks 50 points_length: 42361 dynamic_size: 35 +filter out voxels: 20782 +filter out voxels: 6922 +First batch: fn: 0.0051, fp: 1.6733, label 0: tensor(534), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5384600162506104 and after 0.62528395652771 +num_clicks 50 points_length: 37683 dynamic_size: 32 +filter out voxels: 19372 +filter out voxels: 6755 +First batch: fn: 0.0050, fp: 1.4881, label 0: tensor(532), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5454638600349426 and after 0.6395936012268066 +num_clicks 50 points_length: 34579 dynamic_size: 33 +filter out voxels: 18627 +filter out voxels: 6760 +First batch: fn: 0.0038, fp: 1.3663, label 0: tensor(533), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5664955377578735 and after 0.6661449670791626 +num_clicks 50 points_length: 28520 dynamic_size: 2 +filter out voxels: 15940 +filter out voxels: 6750 +First batch: fn: 0.0086, fp: 1.1214, label 0: tensor(502), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5763158798217773 and after 0.6763366460800171 +num_clicks 50 points_length: 26957 dynamic_size: 46 +filter out voxels: 15810 +filter out voxels: 6444 +First batch: fn: 0.0084, fp: 1.0597, label 0: tensor(546), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5836907625198364 and after 0.6851828098297119 +epoch: 3/20, iter: 0/42: loss:2.7549: rank:-1 +[22:21:38.469] epoch: 3/20, iter: 0/42: loss:2.7549: rank:-1 +num_clicks 50 points_length: 1752 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24378421902656555 and after 0.3580392599105835 +num_clicks 50 points_length: 5383 dynamic_size: 27 +filter out voxels: 4258 +filter out voxels: 7388 +First batch: fn: 0.2820, fp: 2.7905, label 0: tensor(107), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24104507267475128 and after 0.29292556643486023 +num_clicks 50 points_length: 7563 dynamic_size: 7 +filter out voxels: 5539 +filter out voxels: 12550 +First batch: fn: 0.0211, fp: 4.2957, label 0: tensor(196), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23475190997123718 and after 0.2601131498813629 +num_clicks 50 points_length: 7935 dynamic_size: 3 +filter out voxels: 5270 +filter out voxels: 17329 +First batch: fn: 0.0046, fp: 4.5245, label 0: tensor(408), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22211623191833496 and after 0.2562357187271118 +num_clicks 50 points_length: 7442 dynamic_size: 34 +filter out voxels: 5018 +filter out voxels: 21392 +First batch: fn: 0.0046, fp: 4.2432, label 0: tensor(428), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21310235559940338 and after 0.2562445104122162 +num_clicks 50 points_length: 7258 dynamic_size: 13 +filter out voxels: 4983 +filter out voxels: 24050 +First batch: fn: 0.0029, fp: 4.1398, label 0: tensor(273), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20708021521568298 and after 0.25867241621017456 +num_clicks 50 points_length: 6885 dynamic_size: 17 +filter out voxels: 4867 +filter out voxels: 26515 +First batch: fn: 0.0051, fp: 3.9247, label 0: tensor(242), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19842375814914703 and after 0.25978028774261475 +num_clicks 50 points_length: 6646 dynamic_size: 20 +filter out voxels: 4849 +filter out voxels: 28595 +First batch: fn: 0.0074, fp: 3.7860, label 0: tensor(267), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18997697532176971 and after 0.26090049743652344 +num_clicks 50 points_length: 6391 dynamic_size: 28 +filter out voxels: 4849 +filter out voxels: 30725 +First batch: fn: 0.0137, fp: 3.6341, label 0: tensor(218), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18411725759506226 and after 0.26179125905036926 +num_clicks 50 points_length: 6232 dynamic_size: 9 +filter out voxels: 4880 +filter out voxels: 31995 +First batch: fn: 0.0154, fp: 3.5417, label 0: tensor(263), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1747570037841797 and after 0.26124849915504456 +num_clicks 50 points_length: 6092 dynamic_size: 47 +filter out voxels: 4888 +filter out voxels: 33481 +First batch: fn: 0.0200, fp: 3.4572, label 0: tensor(182), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16786906123161316 and after 0.26056861877441406 +epoch: 3/20, iter: 1/42: loss:3.4059: rank:-1 +[22:21:50.601] epoch: 3/20, iter: 1/42: loss:3.4059: rank:-1 +num_clicks 50 points_length: 39484 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7046393156051636 and after 0.717644989490509 +num_clicks 50 points_length: 29398 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 6145 +First batch: fn: 0.1443, fp: 0.1102, label 0: tensor(519), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.743546724319458 and after 0.7647843360900879 +num_clicks 50 points_length: 25523 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 4321 +First batch: fn: 0.1299, fp: 0.0911, label 0: tensor(506), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7548100352287292 and after 0.7936921119689941 +num_clicks 50 points_length: 23514 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 4045 +First batch: fn: 0.1172, fp: 0.0864, label 0: tensor(511), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.754959225654602 and after 0.8118398189544678 +num_clicks 50 points_length: 22512 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 4004 +First batch: fn: 0.1059, fp: 0.0890, label 0: tensor(522), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7604057788848877 and after 0.8257408738136292 +num_clicks 50 points_length: 21666 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 3910 +First batch: fn: 0.0985, fp: 0.0891, label 0: tensor(462), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7635393738746643 and after 0.8373185396194458 +num_clicks 50 points_length: 21221 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 3856 +First batch: fn: 0.0926, fp: 0.0912, label 0: tensor(476), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7641466856002808 and after 0.8465391397476196 +num_clicks 50 points_length: 20206 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 3830 +First batch: fn: 0.0835, fp: 0.0915, label 0: tensor(363), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7645955085754395 and after 0.8528429269790649 +num_clicks 50 points_length: 19879 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 3786 +First batch: fn: 0.0750, fp: 0.0978, label 0: tensor(247), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7642850875854492 and after 0.8577145934104919 +num_clicks 50 points_length: 19183 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 3719 +First batch: fn: 0.0664, fp: 0.0997, label 0: tensor(292), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7643331289291382 and after 0.8607006072998047 +num_clicks 50 points_length: 18572 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 3716 +First batch: fn: 0.0585, fp: 0.1023, label 0: tensor(268), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7628995180130005 and after 0.8659501075744629 +epoch: 3/20, iter: 2/42: loss:2.1957: rank:-1 +[22:22:14.046] epoch: 3/20, iter: 2/42: loss:2.1957: rank:-1 +num_clicks 50 points_length: 4380 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(216) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.10482224076986313 and after 0.11940789967775345 +num_clicks 50 points_length: 36059 dynamic_size: 11 +filter out voxels: 27036 +filter out voxels: 3109 +First batch: fn: 0.2639, fp: 7.9687, label 0: tensor(509), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07271440327167511 and after 0.10906006395816803 +num_clicks 50 points_length: 46467 dynamic_size: 29 +filter out voxels: 39911 +filter out voxels: 6966 +First batch: fn: 0.2333, fp: 10.3756, label 0: tensor(536), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06723219156265259 and after 0.11421573907136917 +num_clicks 50 points_length: 48159 dynamic_size: 1 +filter out voxels: 44941 +filter out voxels: 7457 +First batch: fn: 0.2121, fp: 10.7831, label 0: tensor(296), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06511804461479187 and after 0.11998210102319717 +num_clicks 50 points_length: 52287 dynamic_size: 11 +filter out voxels: 50232 +filter out voxels: 7782 +First batch: fn: 0.1374, fp: 11.8002, label 0: tensor(182), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06713087856769562 and after 0.1217745840549469 +num_clicks 50 points_length: 54025 dynamic_size: 45 +filter out voxels: 52101 +filter out voxels: 8117 +First batch: fn: 0.0982, fp: 12.2363, label 0: tensor(258), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06567235291004181 and after 0.12488240748643875 +num_clicks 50 points_length: 53943 dynamic_size: 29 +filter out voxels: 52174 +filter out voxels: 7836 +First batch: fn: 0.0911, fp: 12.2247, label 0: tensor(163), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06628310680389404 and after 0.12582629919052124 +num_clicks 50 points_length: 54301 dynamic_size: 3 +filter out voxels: 52490 +filter out voxels: 8192 +First batch: fn: 0.0715, fp: 12.3260, label 0: tensor(189), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06589668989181519 and after 0.12813368439674377 +num_clicks 50 points_length: 54134 dynamic_size: 20 +filter out voxels: 52447 +filter out voxels: 7795 +First batch: fn: 0.0651, fp: 12.2943, label 0: tensor(189), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06565695255994797 and after 0.12841245532035828 +num_clicks 50 points_length: 54243 dynamic_size: 42 +filter out voxels: 52615 +filter out voxels: 7981 +First batch: fn: 0.0678, fp: 12.3164, label 0: tensor(291), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06460946053266525 and after 0.12929707765579224 +num_clicks 50 points_length: 53944 dynamic_size: 1 +filter out voxels: 52481 +filter out voxels: 7940 +First batch: fn: 0.0733, fp: 12.2427, label 0: tensor(222), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06354690343141556 and after 0.13102363049983978 +epoch: 3/20, iter: 3/42: loss:4.1521: rank:-1 +[22:22:29.704] epoch: 3/20, iter: 3/42: loss:4.1521: rank:-1 +num_clicks 50 points_length: 71167 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8742607831954956 and after 0.8811361193656921 +num_clicks 50 points_length: 21509 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0773, fp: 0.0531, label 0: tensor(508), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8874377012252808 and after 0.8914599418640137 +num_clicks 50 points_length: 20816 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0749, fp: 0.0512, label 0: tensor(511), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8865206241607666 and after 0.9013932943344116 +num_clicks 50 points_length: 19646 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0656, fp: 0.0535, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8875975608825684 and after 0.9112875461578369 +num_clicks 50 points_length: 18460 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0592, fp: 0.0568, label 0: tensor(523), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8883050084114075 and after 0.9168107509613037 +num_clicks 50 points_length: 17590 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0540, fp: 0.0544, label 0: tensor(281), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8897178173065186 and after 0.9208680391311646 +num_clicks 50 points_length: 16783 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0456, fp: 0.0574, label 0: tensor(317), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8911337852478027 and after 0.9265351295471191 +num_clicks 50 points_length: 15488 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0404, fp: 0.0556, label 0: tensor(219), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8914686441421509 and after 0.9282701015472412 +num_clicks 50 points_length: 14832 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0309, fp: 0.0590, label 0: tensor(200), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8917464017868042 and after 0.9310733675956726 +num_clicks 50 points_length: 14280 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0251, fp: 0.0614, label 0: tensor(200), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8915640711784363 and after 0.9329001307487488 +num_clicks 50 points_length: 13890 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0196, fp: 0.0646, label 0: tensor(177), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8920873403549194 and after 0.9348556995391846 +epoch: 3/20, iter: 4/42: loss:2.2941: rank:-1 +[22:22:52.663] epoch: 3/20, iter: 4/42: loss:2.2941: rank:-1 +num_clicks 50 points_length: 41372 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.683509349822998 and after 0.6919249892234802 +num_clicks 50 points_length: 23554 dynamic_size: 14 +filter out voxels: 3226 +filter out voxels: 10406 +First batch: fn: 0.1599, fp: 0.2134, label 0: tensor(131), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7087447643280029 and after 0.7179966568946838 +num_clicks 50 points_length: 19413 dynamic_size: 46 +filter out voxels: 1703 +filter out voxels: 5837 +First batch: fn: 0.0708, fp: 0.2368, label 0: tensor(70), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7191873788833618 and after 0.7322536706924438 +num_clicks 50 points_length: 18403 dynamic_size: 9 +filter out voxels: 1171 +filter out voxels: 3550 +First batch: fn: 0.0282, fp: 0.2634, label 0: tensor(175), label 1: tensor(354) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7223610877990723 and after 0.7381023168563843 +num_clicks 50 points_length: 17316 dynamic_size: 39 +filter out voxels: 579 +filter out voxels: 3448 +First batch: fn: 0.0117, fp: 0.2627, label 0: tensor(328), label 1: tensor(233) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7280261516571045 and after 0.746695339679718 +num_clicks 50 points_length: 15653 dynamic_size: 28 +filter out voxels: 139 +filter out voxels: 3215 +First batch: fn: 0.0067, fp: 0.2413, label 0: tensor(428), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7343624234199524 and after 0.7579255700111389 +num_clicks 50 points_length: 12839 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 3130 +First batch: fn: 0.0069, fp: 0.1966, label 0: tensor(374), label 1: tensor(171) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7343156337738037 and after 0.7596083879470825 +num_clicks 50 points_length: 13102 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 2999 +First batch: fn: 0.0034, fp: 0.2042, label 0: tensor(436), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7376552224159241 and after 0.7683985233306885 +num_clicks 50 points_length: 12064 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 2590 +First batch: fn: 0.0042, fp: 0.1870, label 0: tensor(400), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7372128963470459 and after 0.7699518799781799 +num_clicks 50 points_length: 11892 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 2530 +First batch: fn: 0.0045, fp: 0.1840, label 0: tensor(369), label 1: tensor(156) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7387447357177734 and after 0.7746466994285583 +num_clicks 50 points_length: 12014 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 2222 +First batch: fn: 0.0044, fp: 0.1859, label 0: tensor(434), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7384839057922363 and after 0.778527557849884 +epoch: 3/20, iter: 5/42: loss:2.0127: rank:-1 +[22:23:10.912] epoch: 3/20, iter: 5/42: loss:2.0127: rank:-1 +num_clicks 50 points_length: 4832 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11366381496191025 and after 0.12636366486549377 +num_clicks 50 points_length: 78893 dynamic_size: 1 +filter out voxels: 77232 +filter out voxels: 4721 +First batch: fn: 0.1337, fp: 16.1935, label 0: tensor(209), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1230248510837555 and after 0.15559828281402588 +num_clicks 50 points_length: 84369 dynamic_size: 44 +filter out voxels: 83074 +filter out voxels: 6709 +First batch: fn: 0.0683, fp: 17.3922, label 0: tensor(183), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12299531698226929 and after 0.17070052027702332 +num_clicks 50 points_length: 84231 dynamic_size: 9 +filter out voxels: 83005 +filter out voxels: 7615 +First batch: fn: 0.0476, fp: 17.3843, label 0: tensor(199), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13416408002376556 and after 0.19086776673793793 +num_clicks 50 points_length: 82805 dynamic_size: 17 +filter out voxels: 81797 +filter out voxels: 7660 +First batch: fn: 0.0598, fp: 17.0770, label 0: tensor(137), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13761962950229645 and after 0.21377137303352356 +num_clicks 50 points_length: 81483 dynamic_size: 32 +filter out voxels: 82661 +filter out voxels: 7643 +First batch: fn: 0.0428, fp: 17.2767, label 0: tensor(181), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1394723653793335 and after 0.22199735045433044 +num_clicks 50 points_length: 79615 dynamic_size: 24 +filter out voxels: 82026 +filter out voxels: 7610 +First batch: fn: 0.0428, fp: 17.1279, label 0: tensor(184), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14627739787101746 and after 0.2287687212228775 +num_clicks 50 points_length: 79405 dynamic_size: 25 +filter out voxels: 82336 +filter out voxels: 7843 +First batch: fn: 0.0354, fp: 17.2022, label 0: tensor(168), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15011104941368103 and after 0.23675724864006042 +num_clicks 50 points_length: 77992 dynamic_size: 30 +filter out voxels: 81942 +filter out voxels: 7828 +First batch: fn: 0.0352, fp: 17.1167, label 0: tensor(176), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15159189701080322 and after 0.2441861927509308 +num_clicks 50 points_length: 76710 dynamic_size: 17 +filter out voxels: 81676 +filter out voxels: 7781 +First batch: fn: 0.0362, fp: 17.0522, label 0: tensor(160), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15458202362060547 and after 0.2491016983985901 +num_clicks 50 points_length: 76496 dynamic_size: 34 +filter out voxels: 82271 +filter out voxels: 7776 +First batch: fn: 0.0304, fp: 17.1923, label 0: tensor(165), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1605043262243271 and after 0.25386667251586914 +epoch: 3/20, iter: 6/42: loss:3.797: rank:-1 +[22:23:25.004] epoch: 3/20, iter: 6/42: loss:3.797: rank:-1 +num_clicks 50 points_length: 13975 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14584125578403473 and after 0.18250635266304016 +num_clicks 50 points_length: 49072 dynamic_size: 9 +filter out voxels: 26801 +filter out voxels: 281 +First batch: fn: 0.8051, fp: 1.1117, label 0: tensor(347), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13376004993915558 and after 0.1900826096534729 +num_clicks 50 points_length: 54726 dynamic_size: 2 +filter out voxels: 42216 +filter out voxels: 221 +First batch: fn: 0.7694, fp: 1.7183, label 0: tensor(428), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11786989867687225 and after 0.20139741897583008 +num_clicks 50 points_length: 52815 dynamic_size: 40 +filter out voxels: 65494 +filter out voxels: 207 +First batch: fn: 0.7663, fp: 2.4887, label 0: tensor(347), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12940818071365356 and after 0.22617512941360474 +num_clicks 50 points_length: 51860 dynamic_size: 1 +filter out voxels: 73824 +filter out voxels: 207 +First batch: fn: 0.7511, fp: 2.7579, label 0: tensor(403), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14095324277877808 and after 0.2340778261423111 +num_clicks 50 points_length: 51139 dynamic_size: 16 +filter out voxels: 78926 +filter out voxels: 167 +First batch: fn: 0.7439, fp: 2.9125, label 0: tensor(154), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14716798067092896 and after 0.24476175010204315 +num_clicks 50 points_length: 49469 dynamic_size: 22 +filter out voxels: 82596 +filter out voxels: 146 +First batch: fn: 0.7029, fp: 3.0581, label 0: tensor(168), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.147917240858078 and after 0.25172126293182373 +num_clicks 50 points_length: 49501 dynamic_size: 10 +filter out voxels: 83284 +filter out voxels: 160 +First batch: fn: 0.6711, fp: 3.0920, label 0: tensor(149), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1481170654296875 and after 0.2586117088794708 +num_clicks 50 points_length: 48665 dynamic_size: 49 +filter out voxels: 84285 +filter out voxels: 150 +First batch: fn: 0.6421, fp: 3.1417, label 0: tensor(185), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14870122075080872 and after 0.26325082778930664 +num_clicks 50 points_length: 48274 dynamic_size: 18 +filter out voxels: 84114 +filter out voxels: 164 +First batch: fn: 0.6250, fp: 3.1373, label 0: tensor(132), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14921319484710693 and after 0.26737064123153687 +num_clicks 50 points_length: 47948 dynamic_size: 19 +filter out voxels: 85199 +filter out voxels: 183 +First batch: fn: 0.6034, fp: 3.1850, label 0: tensor(131), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15011131763458252 and after 0.2714383602142334 +epoch: 3/20, iter: 7/42: loss:3.6349: rank:-1 +[22:23:46.448] epoch: 3/20, iter: 7/42: loss:3.6349: rank:-1 +num_clicks 50 points_length: 345 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.017150457948446274 and after 0.30465593934059143 +num_clicks 50 points_length: 733 dynamic_size: 47 +filter out voxels: 141 +filter out voxels: 13194 +First batch: fn: 0.0166, fp: 1.5010, label 0: tensor(111), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.021553710103034973 and after 0.22493737936019897 +num_clicks 50 points_length: 1321 dynamic_size: 5 +filter out voxels: 774 +filter out voxels: 19186 +First batch: fn: 0.0145, fp: 2.7205, label 0: tensor(54), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.020204851403832436 and after 0.2005782425403595 +num_clicks 50 points_length: 1574 dynamic_size: 49 +filter out voxels: 1066 +filter out voxels: 24167 +First batch: fn: 0.0228, fp: 3.2360, label 0: tensor(112), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.02118048258125782 and after 0.21597029268741608 +num_clicks 50 points_length: 1348 dynamic_size: 12 +filter out voxels: 1039 +filter out voxels: 25341 +First batch: fn: 0.0331, fp: 2.7578, label 0: tensor(62), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.020631523802876472 and after 0.20835737884044647 +num_clicks 50 points_length: 1391 dynamic_size: 22 +filter out voxels: 1103 +filter out voxels: 28202 +First batch: fn: 0.0642, fp: 2.8157, label 0: tensor(66), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.018690383061766624 and after 0.2009277641773224 +num_clicks 50 points_length: 1500 dynamic_size: 47 +filter out voxels: 1226 +filter out voxels: 26561 +First batch: fn: 0.0518, fp: 3.0538, label 0: tensor(56), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.019702831283211708 and after 0.21658486127853394 +num_clicks 50 points_length: 1328 dynamic_size: 8 +filter out voxels: 1030 +filter out voxels: 28043 +First batch: fn: 0.0393, fp: 2.7101, label 0: tensor(29), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01835116185247898 and after 0.22027136385440826 +num_clicks 50 points_length: 1298 dynamic_size: 34 +filter out voxels: 1004 +filter out voxels: 28163 +First batch: fn: 0.0352, fp: 2.6522, label 0: tensor(77), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.021538272500038147 and after 0.23291443288326263 +num_clicks 50 points_length: 1107 dynamic_size: 38 +filter out voxels: 868 +filter out voxels: 26966 +First batch: fn: 0.0870, fp: 2.2050, label 0: tensor(59), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01899764873087406 and after 0.2276304066181183 +num_clicks 50 points_length: 1196 dynamic_size: 44 +filter out voxels: 945 +filter out voxels: 27701 +First batch: fn: 0.0538, fp: 2.4224, label 0: tensor(61), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.020432723686099052 and after 0.23526260256767273 +epoch: 3/20, iter: 8/42: loss:4.2641: rank:-1 +[22:23:55.793] epoch: 3/20, iter: 8/42: loss:4.2641: rank:-1 +num_clicks 50 points_length: 4451 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03392302989959717 and after 0.1009368821978569 +num_clicks 50 points_length: 5713 dynamic_size: 15 +filter out voxels: 1845 +filter out voxels: 15863 +First batch: fn: 0.8459, fp: 0.4377, label 0: tensor(48), label 1: tensor(497) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.02219836600124836 and after 0.29325881600379944 +num_clicks 50 points_length: 5214 dynamic_size: 39 +filter out voxels: 2906 +filter out voxels: 21349 +First batch: fn: 0.3698, fp: 0.8016, label 0: tensor(181), label 1: tensor(336) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.030902013182640076 and after 0.36692139506340027 +num_clicks 50 points_length: 5077 dynamic_size: 6 +filter out voxels: 2995 +filter out voxels: 21684 +First batch: fn: 0.0995, fp: 1.0411, label 0: tensor(264), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0487966425716877 and after 0.3888905942440033 +num_clicks 50 points_length: 5273 dynamic_size: 33 +filter out voxels: 3392 +filter out voxels: 21513 +First batch: fn: 0.0887, fp: 1.0959, label 0: tensor(343), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05134585127234459 and after 0.3952426016330719 +num_clicks 50 points_length: 5224 dynamic_size: 36 +filter out voxels: 3508 +filter out voxels: 22848 +First batch: fn: 0.0789, fp: 1.0948, label 0: tensor(379), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05131445452570915 and after 0.4031972587108612 +num_clicks 50 points_length: 5071 dynamic_size: 44 +filter out voxels: 3549 +filter out voxels: 23183 +First batch: fn: 0.0829, fp: 1.0564, label 0: tensor(327), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.050988297909498215 and after 0.4066181480884552 +num_clicks 50 points_length: 5047 dynamic_size: 43 +filter out voxels: 3543 +filter out voxels: 23245 +First batch: fn: 0.0800, fp: 1.0539, label 0: tensor(258), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05108426511287689 and after 0.4122147560119629 +num_clicks 50 points_length: 4997 dynamic_size: 13 +filter out voxels: 3527 +filter out voxels: 23089 +First batch: fn: 0.0762, fp: 1.0465, label 0: tensor(252), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.050057169049978256 and after 0.41569969058036804 +num_clicks 50 points_length: 4915 dynamic_size: 43 +filter out voxels: 3492 +filter out voxels: 23046 +First batch: fn: 0.0721, fp: 1.0321, label 0: tensor(263), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05075572803616524 and after 0.4211353361606598 +num_clicks 50 points_length: 4814 dynamic_size: 26 +filter out voxels: 3433 +filter out voxels: 22972 +First batch: fn: 0.0789, fp: 1.0027, label 0: tensor(243), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05030111223459244 and after 0.425300270318985 +epoch: 3/20, iter: 9/42: loss:4.0026: rank:-1 +[22:24:10.757] epoch: 3/20, iter: 9/42: loss:4.0026: rank:-1 +num_clicks 50 points_length: 7916 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3497430086135864 and after 0.3303202986717224 +num_clicks 50 points_length: 8587 dynamic_size: 43 +filter out voxels: 635 +filter out voxels: 1409 +First batch: fn: 1.0000, fp: 0.0848, label 0: tensor(12), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3659398555755615 and after 0.3809390664100647 +num_clicks 50 points_length: 8636 dynamic_size: 21 +filter out voxels: 905 +filter out voxels: 52 +First batch: fn: 0.9766, fp: 0.1143, label 0: tensor(1), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3573856055736542 and after 0.6288036108016968 +num_clicks 50 points_length: 5982 dynamic_size: 35 +filter out voxels: 1079 +filter out voxels: 0 +First batch: fn: 0.5955, fp: 0.1602, label 0: tensor(38), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4008225202560425 and after 0.7601068019866943 +num_clicks 50 points_length: 3903 dynamic_size: 40 +filter out voxels: 1067 +filter out voxels: 0 +First batch: fn: 0.2804, fp: 0.2126, label 0: tensor(127), label 1: tensor(351) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43026262521743774 and after 0.807921290397644 +num_clicks 50 points_length: 2985 dynamic_size: 9 +filter out voxels: 1045 +filter out voxels: 0 +First batch: fn: 0.1371, fp: 0.2400, label 0: tensor(177), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.472506582736969 and after 0.8353793621063232 +num_clicks 50 points_length: 2362 dynamic_size: 24 +filter out voxels: 809 +filter out voxels: 0 +First batch: fn: 0.0950, fp: 0.2034, label 0: tensor(157), label 1: tensor(161) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47824251651763916 and after 0.8462656736373901 +num_clicks 50 points_length: 2185 dynamic_size: 16 +filter out voxels: 923 +filter out voxels: 0 +First batch: fn: 0.0582, fp: 0.2178, label 0: tensor(205), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5125828981399536 and after 0.8576719760894775 +num_clicks 50 points_length: 1915 dynamic_size: 49 +filter out voxels: 706 +filter out voxels: 0 +First batch: fn: 0.0408, fp: 0.2011, label 0: tensor(155), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5105611085891724 and after 0.8603324890136719 +num_clicks 50 points_length: 1956 dynamic_size: 30 +filter out voxels: 761 +filter out voxels: 0 +First batch: fn: 0.0296, fp: 0.2175, label 0: tensor(221), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5196882486343384 and after 0.8672350645065308 +num_clicks 50 points_length: 1718 dynamic_size: 25 +filter out voxels: 708 +filter out voxels: 0 +First batch: fn: 0.0274, fp: 0.1896, label 0: tensor(243), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5195370316505432 and after 0.871213436126709 +epoch: 3/20, iter: 10/42: loss:2.3595: rank:-1 +[22:24:25.000] epoch: 3/20, iter: 10/42: loss:2.3595: rank:-1 +num_clicks 50 points_length: 957 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40233370661735535 and after 0.19084975123405457 +num_clicks 50 points_length: 8794 dynamic_size: 5 +filter out voxels: 78 +filter out voxels: 8244 +First batch: fn: 0.8451, fp: 0.0300, label 0: tensor(0), label 1: tensor(156) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40679875016212463 and after 0.19432978332042694 +num_clicks 50 points_length: 13439 dynamic_size: 30 +filter out voxels: 16 +filter out voxels: 12995 +First batch: fn: 0.8292, fp: 0.0377, label 0: tensor(2), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40649670362472534 and after 0.1943453997373581 +num_clicks 50 points_length: 15372 dynamic_size: 7 +filter out voxels: 9 +filter out voxels: 15056 +First batch: fn: 0.8212, fp: 0.0390, label 0: tensor(1), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40971100330352783 and after 0.2135370820760727 +num_clicks 50 points_length: 15714 dynamic_size: 11 +filter out voxels: 17 +filter out voxels: 15404 +First batch: fn: 0.7947, fp: 0.0414, label 0: tensor(0), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41073504090309143 and after 0.2189578413963318 +num_clicks 50 points_length: 15934 dynamic_size: 1 +filter out voxels: 6 +filter out voxels: 15593 +First batch: fn: 0.7885, fp: 0.0408, label 0: tensor(0), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40934547781944275 and after 0.2145681530237198 +num_clicks 50 points_length: 15538 dynamic_size: 4 +filter out voxels: 1 +filter out voxels: 15250 +First batch: fn: 0.7960, fp: 0.0384, label 0: tensor(0), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4095118045806885 and after 0.19910721480846405 +num_clicks 50 points_length: 15599 dynamic_size: 17 +filter out voxels: 5 +filter out voxels: 15317 +First batch: fn: 0.8181, fp: 0.0376, label 0: tensor(1), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4107992351055145 and after 0.22349776327610016 +num_clicks 50 points_length: 15492 dynamic_size: 40 +filter out voxels: 15 +filter out voxels: 15232 +First batch: fn: 0.7801, fp: 0.0402, label 0: tensor(2), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41201552748680115 and after 0.23502226173877716 +num_clicks 50 points_length: 15700 dynamic_size: 20 +filter out voxels: 11 +filter out voxels: 15438 +First batch: fn: 0.7644, fp: 0.0407, label 0: tensor(1), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41040539741516113 and after 0.21279244124889374 +num_clicks 50 points_length: 15504 dynamic_size: 6 +filter out voxels: 2 +filter out voxels: 15235 +First batch: fn: 0.7980, fp: 0.0378, label 0: tensor(0), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41222164034843445 and after 0.23232316970825195 +epoch: 3/20, iter: 11/42: loss:3.114: rank:-1 +[22:24:36.282] epoch: 3/20, iter: 11/42: loss:3.114: rank:-1 +num_clicks 50 points_length: 522 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07560878247022629 and after 0.12675073742866516 +num_clicks 50 points_length: 1854 dynamic_size: 34 +filter out voxels: 1499 +filter out voxels: 0 +First batch: fn: 0.4693, fp: 3.0824, label 0: tensor(49), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.10546737164258957 and after 0.2384478747844696 +num_clicks 50 points_length: 904 dynamic_size: 38 +filter out voxels: 664 +filter out voxels: 0 +First batch: fn: 0.2989, fp: 1.4330, label 0: tensor(73), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11876405775547028 and after 0.3446645438671112 +num_clicks 50 points_length: 450 dynamic_size: 17 +filter out voxels: 234 +filter out voxels: 0 +First batch: fn: 0.1877, fp: 0.6743, label 0: tensor(72), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12521420419216156 and after 0.38439661264419556 +num_clicks 50 points_length: 301 dynamic_size: 29 +filter out voxels: 106 +filter out voxels: 0 +First batch: fn: 0.2050, fp: 0.3716, label 0: tensor(33), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11957286298274994 and after 0.33997848629951477 +num_clicks 50 points_length: 507 dynamic_size: 8 +filter out voxels: 279 +filter out voxels: 0 +First batch: fn: 0.1341, fp: 0.8372, label 0: tensor(64), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12765933573246002 and after 0.3924519419670105 +num_clicks 50 points_length: 305 dynamic_size: 4 +filter out voxels: 111 +filter out voxels: 0 +First batch: fn: 0.1456, fp: 0.4387, label 0: tensor(21), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11704239249229431 and after 0.35680997371673584 +num_clicks 50 points_length: 433 dynamic_size: 32 +filter out voxels: 239 +filter out voxels: 0 +First batch: fn: 0.1303, fp: 0.6992, label 0: tensor(62), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12375965714454651 and after 0.3746834993362427 +num_clicks 50 points_length: 373 dynamic_size: 24 +filter out voxels: 157 +filter out voxels: 0 +First batch: fn: 0.1169, fp: 0.5977, label 0: tensor(59), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1277812123298645 and after 0.397788405418396 +num_clicks 50 points_length: 288 dynamic_size: 39 +filter out voxels: 91 +filter out voxels: 0 +First batch: fn: 0.1379, fp: 0.4138, label 0: tensor(67), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1258983314037323 and after 0.386341392993927 +num_clicks 50 points_length: 331 dynamic_size: 9 +filter out voxels: 127 +filter out voxels: 0 +First batch: fn: 0.1226, fp: 0.5115, label 0: tensor(25), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11947791278362274 and after 0.3742690682411194 +epoch: 3/20, iter: 12/42: loss:4.9899: rank:-1 +[22:24:52.466] epoch: 3/20, iter: 12/42: loss:4.9899: rank:-1 +num_clicks 50 points_length: 4851 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(218) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1591973602771759 and after 0.10142775624990463 +num_clicks 50 points_length: 4510 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9287, fp: 0.0010, label 0: tensor(0), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14622384309768677 and after 0.3796312212944031 +num_clicks 50 points_length: 2894 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3241, fp: 0.2725, label 0: tensor(231), label 1: tensor(255) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.30748534202575684 and after 0.4328976273536682 +num_clicks 50 points_length: 2202 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2977, fp: 0.1563, label 0: tensor(160), label 1: tensor(200) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25654733180999756 and after 0.4538995921611786 +num_clicks 50 points_length: 2207 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1738, fp: 0.2812, label 0: tensor(342), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31799209117889404 and after 0.5131784677505493 +num_clicks 50 points_length: 1584 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1847, fp: 0.1418, label 0: tensor(161), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2925546169281006 and after 0.5289103984832764 +num_clicks 50 points_length: 1593 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1464, fp: 0.1820, label 0: tensor(135), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29826873540878296 and after 0.5514401793479919 +num_clicks 50 points_length: 1473 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1208, fp: 0.1828, label 0: tensor(160), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31201088428497314 and after 0.5887153744697571 +num_clicks 50 points_length: 1321 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1053, fp: 0.1670, label 0: tensor(150), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3020904064178467 and after 0.5938506126403809 +num_clicks 50 points_length: 1321 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1014, fp: 0.1709, label 0: tensor(151), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31790754199028015 and after 0.6075287461280823 +num_clicks 50 points_length: 1269 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0940, fp: 0.1676, label 0: tensor(183), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3116401433944702 and after 0.624424397945404 +epoch: 3/20, iter: 13/42: loss:2.7491: rank:-1 +[22:25:07.549] epoch: 3/20, iter: 13/42: loss:2.7491: rank:-1 +num_clicks 50 points_length: 22104 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42348480224609375 and after 0.1103983074426651 +num_clicks 50 points_length: 20499 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.9584, fp: 0.0000, label 0: tensor(0), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4969903230667114 and after 0.2214410901069641 +num_clicks 50 points_length: 18722 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 5 +First batch: fn: 0.9273, fp: 0.0002, label 0: tensor(11), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5376268625259399 and after 0.3111276626586914 +num_clicks 50 points_length: 16869 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.8842, fp: 0.0001, label 0: tensor(6), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5773742198944092 and after 0.38256511092185974 +num_clicks 50 points_length: 15029 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.8500, fp: 0.0001, label 0: tensor(6), label 1: tensor(534) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5868695378303528 and after 0.4418935775756836 +num_clicks 50 points_length: 12829 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.8376, fp: 0.0001, label 0: tensor(9), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5869138240814209 and after 0.4914797842502594 +num_clicks 50 points_length: 10879 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.8291, fp: 0.0000, label 0: tensor(8), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5726125240325928 and after 0.5264527201652527 +num_clicks 50 points_length: 9614 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.8223, fp: 0.0000, label 0: tensor(7), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5727282166481018 and after 0.5438626408576965 +num_clicks 50 points_length: 8412 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.8271, fp: 0.0000, label 0: tensor(6), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.571429967880249 and after 0.5735459923744202 +num_clicks 50 points_length: 7417 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.8112, fp: 0.0001, label 0: tensor(28), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5889193415641785 and after 0.5863984227180481 +num_clicks 50 points_length: 6222 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 11 +First batch: fn: 0.8197, fp: 0.0002, label 0: tensor(43), label 1: tensor(550) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5876160264015198 and after 0.5867125988006592 +epoch: 3/20, iter: 14/42: loss:2.4329: rank:-1 +[22:25:26.843] epoch: 3/20, iter: 14/42: loss:2.4329: rank:-1 +num_clicks 50 points_length: 1078 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06384676694869995 and after 0.1446402370929718 +num_clicks 50 points_length: 968 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 270 +First batch: fn: 0.8173, fp: 0.0807, label 0: tensor(32), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04433077573776245 and after 0.2884066104888916 +num_clicks 50 points_length: 741 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 64 +First batch: fn: 0.5315, fp: 0.1558, label 0: tensor(57), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03652174025774002 and after 0.4727025032043457 +num_clicks 50 points_length: 701 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 41 +First batch: fn: 0.4926, fp: 0.1577, label 0: tensor(59), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03816131874918938 and after 0.5680956840515137 +num_clicks 50 points_length: 699 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 71 +First batch: fn: 0.4378, fp: 0.2106, label 0: tensor(91), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03677758201956749 and after 0.5978471040725708 +num_clicks 50 points_length: 642 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 229 +First batch: fn: 0.4462, fp: 0.1494, label 0: tensor(70), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03661726415157318 and after 0.5194156169891357 +num_clicks 50 points_length: 651 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 685 +First batch: fn: 0.4193, fp: 0.1846, label 0: tensor(81), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03664921596646309 and after 0.5102660655975342 +num_clicks 50 points_length: 619 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 968 +First batch: fn: 0.3803, fp: 0.1939, label 0: tensor(98), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03664921596646309 and after 0.5216177105903625 +num_clicks 50 points_length: 599 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 941 +First batch: fn: 0.3506, fp: 0.2050, label 0: tensor(91), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.036681223660707474 and after 0.5146055221557617 +num_clicks 50 points_length: 592 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 1264 +First batch: fn: 0.3247, fp: 0.2245, label 0: tensor(101), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.036745406687259674 and after 0.5128687620162964 +num_clicks 50 points_length: 581 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 1455 +First batch: fn: 0.3043, fp: 0.2347, label 0: tensor(105), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03672122210264206 and after 0.5106867551803589 +epoch: 3/20, iter: 15/42: loss:3.7472: rank:-1 +[22:25:37.868] epoch: 3/20, iter: 15/42: loss:3.7472: rank:-1 +num_clicks 50 points_length: 43773 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.026509949937462807 and after 0.005338239949196577 +num_clicks 50 points_length: 43552 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9946, fp: 0.0003, label 0: tensor(2), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.007209151051938534 and after 0.009032666683197021 +num_clicks 50 points_length: 43375 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9909, fp: 0.0000, label 0: tensor(1), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0030551825184375048 and after 0.03339160978794098 +num_clicks 50 points_length: 42704 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9651, fp: 0.0105, label 0: tensor(9), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.02982974983751774 and after 0.06392210721969604 +num_clicks 50 points_length: 41205 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9310, fp: 0.0103, label 0: tensor(13), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04939849674701691 and after 0.09064735472202301 +num_clicks 50 points_length: 40376 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8979, fp: 0.0245, label 0: tensor(13), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.055363528430461884 and after 0.12710601091384888 +num_clicks 50 points_length: 38935 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8497, fp: 0.0398, label 0: tensor(8), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05743333697319031 and after 0.15410354733467102 +num_clicks 50 points_length: 37596 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8101, fp: 0.0488, label 0: tensor(11), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06479619443416595 and after 0.168891042470932 +num_clicks 50 points_length: 36737 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7873, fp: 0.0519, label 0: tensor(14), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06750516593456268 and after 0.18612946569919586 +num_clicks 50 points_length: 35974 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7677, fp: 0.0542, label 0: tensor(17), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06629610061645508 and after 0.22141729295253754 +num_clicks 50 points_length: 33563 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7095, fp: 0.0573, label 0: tensor(14), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07285821437835693 and after 0.24618153274059296 +epoch: 3/20, iter: 16/42: loss:3.96: rank:-1 +[22:25:57.319] epoch: 3/20, iter: 16/42: loss:3.96: rank:-1 +num_clicks 50 points_length: 93188 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17364168167114258 and after 0.07264312356710434 +num_clicks 50 points_length: 88648 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9500, fp: 0.0013, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21243619918823242 and after 0.12817084789276123 +num_clicks 50 points_length: 84019 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8980, fp: 0.0036, label 0: tensor(1), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26903989911079407 and after 0.15548449754714966 +num_clicks 50 points_length: 82935 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8858, fp: 0.0042, label 0: tensor(0), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28402918577194214 and after 0.2051672637462616 +num_clicks 50 points_length: 78591 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8384, fp: 0.0049, label 0: tensor(0), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3182579278945923 and after 0.21725162863731384 +num_clicks 50 points_length: 77848 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8308, fp: 0.0046, label 0: tensor(2), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2987530529499054 and after 0.27186980843544006 +num_clicks 50 points_length: 71310 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7587, fp: 0.0065, label 0: tensor(2), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3560009002685547 and after 0.259820818901062 +num_clicks 50 points_length: 72700 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7739, fp: 0.0063, label 0: tensor(3), label 1: tensor(534) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3209611177444458 and after 0.31784072518348694 +num_clicks 50 points_length: 64920 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6842, fp: 0.0124, label 0: tensor(0), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3972148895263672 and after 0.2947869896888733 +num_clicks 50 points_length: 69986 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7381, fp: 0.0130, label 0: tensor(0), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3367149829864502 and after 0.3552265465259552 +num_clicks 50 points_length: 61017 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6341, fp: 0.0207, label 0: tensor(2), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40385526418685913 and after 0.3337840437889099 +epoch: 3/20, iter: 17/42: loss:3.657: rank:-1 +[22:26:18.640] epoch: 3/20, iter: 17/42: loss:3.657: rank:-1 +num_clicks 50 points_length: 370 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3168204128742218 and after 0.23299939930438995 +num_clicks 50 points_length: 279 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 7 +First batch: fn: 0.9834, fp: 0.0241, label 0: tensor(1), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12305523455142975 and after 0.3512010872364044 +num_clicks 50 points_length: 335 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 3 +First batch: fn: 0.9824, fp: 0.0914, label 0: tensor(3), label 1: tensor(120) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05411587283015251 and after 0.40749800205230713 +num_clicks 50 points_length: 167 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9827, fp: 0.1406, label 0: tensor(5), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.057207271456718445 and after 0.40617191791534424 +num_clicks 50 points_length: 185 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9841, fp: 0.1769, label 0: tensor(9), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04539287090301514 and after 0.42475342750549316 +num_clicks 50 points_length: 141 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9853, fp: 0.1964, label 0: tensor(9), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.045196421444416046 and after 0.425845205783844 +num_clicks 50 points_length: 140 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9856, fp: 0.2017, label 0: tensor(2), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04882889240980148 and after 0.42413461208343506 +num_clicks 50 points_length: 145 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9851, fp: 0.2035, label 0: tensor(0), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.049282290041446686 and after 0.42724308371543884 +num_clicks 50 points_length: 139 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9839, fp: 0.2054, label 0: tensor(3), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04849007725715637 and after 0.4301983714103699 +num_clicks 50 points_length: 140 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9807, fp: 0.2062, label 0: tensor(8), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.045159175992012024 and after 0.4327370822429657 +num_clicks 50 points_length: 137 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9792, fp: 0.2036, label 0: tensor(1), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04608217999339104 and after 0.4349493086338043 +epoch: 3/20, iter: 18/42: loss:3.999: rank:-1 +[22:26:30.695] epoch: 3/20, iter: 18/42: loss:3.999: rank:-1 +num_clicks 50 points_length: 8876 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(436) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6954435110092163 and after 0.6611719131469727 +num_clicks 50 points_length: 5915 dynamic_size: 22 +filter out voxels: 12 +filter out voxels: 527 +First batch: fn: 0.6642, fp: 0.0023, label 0: tensor(3), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7201340198516846 and after 0.7456786632537842 +num_clicks 50 points_length: 4188 dynamic_size: 44 +filter out voxels: 12 +filter out voxels: 63 +First batch: fn: 0.4256, fp: 0.0462, label 0: tensor(110), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7541662454605103 and after 0.8291225433349609 +num_clicks 50 points_length: 2403 dynamic_size: 35 +filter out voxels: 1 +filter out voxels: 11 +First batch: fn: 0.1770, fp: 0.0937, label 0: tensor(260), label 1: tensor(276) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7582443356513977 and after 0.8577804565429688 +num_clicks 50 points_length: 1754 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0769, fp: 0.1207, label 0: tensor(250), label 1: tensor(166) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7488855123519897 and after 0.8640997409820557 +num_clicks 50 points_length: 1528 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 7 +First batch: fn: 0.0368, fp: 0.1353, label 0: tensor(327), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7524170875549316 and after 0.8715822696685791 +num_clicks 50 points_length: 1375 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0294, fp: 0.1255, label 0: tensor(211), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.748215913772583 and after 0.8721784353256226 +num_clicks 50 points_length: 1326 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 5 +First batch: fn: 0.0246, fp: 0.1248, label 0: tensor(264), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7453088164329529 and after 0.8713235855102539 +num_clicks 50 points_length: 1335 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 4 +First batch: fn: 0.0223, fp: 0.1281, label 0: tensor(254), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7441732883453369 and after 0.8750079870223999 +num_clicks 50 points_length: 1253 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0243, fp: 0.1168, label 0: tensor(250), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7424794435501099 and after 0.8765519857406616 +num_clicks 50 points_length: 1221 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0277, fp: 0.1098, label 0: tensor(178), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7437276840209961 and after 0.8756574392318726 +epoch: 3/20, iter: 19/42: loss:1.2334: rank:-1 +[22:26:46.342] epoch: 3/20, iter: 19/42: loss:1.2334: rank:-1 +num_clicks 50 points_length: 889 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38181328773498535 and after 0.567682147026062 +num_clicks 50 points_length: 849 dynamic_size: 44 +filter out voxels: 191 +filter out voxels: 86 +First batch: fn: 0.4457, fp: 0.0051, label 0: tensor(1), label 1: tensor(198) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4343380331993103 and after 0.7428821921348572 +num_clicks 50 points_length: 600 dynamic_size: 45 +filter out voxels: 12 +filter out voxels: 16 +First batch: fn: 0.3140, fp: 0.0054, label 0: tensor(1), label 1: tensor(172) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.440570592880249 and after 0.7693693041801453 +num_clicks 50 points_length: 558 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 5 +First batch: fn: 0.2965, fp: 0.0064, label 0: tensor(0), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44224587082862854 and after 0.7763411998748779 +num_clicks 50 points_length: 550 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 4 +First batch: fn: 0.2920, fp: 0.0085, label 0: tensor(1), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44260168075561523 and after 0.7877885103225708 +num_clicks 50 points_length: 491 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 5 +First batch: fn: 0.2864, fp: 0.0095, label 0: tensor(3), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44306182861328125 and after 0.7946149110794067 +num_clicks 50 points_length: 472 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 11 +First batch: fn: 0.2854, fp: 0.0098, label 0: tensor(1), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4432334303855896 and after 0.7978407144546509 +num_clicks 50 points_length: 461 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 4 +First batch: fn: 0.2868, fp: 0.0102, label 0: tensor(0), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4429241418838501 and after 0.8026427626609802 +num_clicks 50 points_length: 462 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 5 +First batch: fn: 0.2788, fp: 0.0111, label 0: tensor(1), label 1: tensor(181) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4433903396129608 and after 0.8093730807304382 +num_clicks 50 points_length: 436 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 4 +First batch: fn: 0.2711, fp: 0.0115, label 0: tensor(3), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.443619966506958 and after 0.8132789134979248 +num_clicks 50 points_length: 439 dynamic_size: 26 +filter out voxels: 1 +filter out voxels: 4 +First batch: fn: 0.2605, fp: 0.0120, label 0: tensor(2), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4439347982406616 and after 0.812688946723938 +epoch: 3/20, iter: 20/42: loss:2.5019: rank:-1 +[22:26:57.844] epoch: 3/20, iter: 20/42: loss:2.5019: rank:-1 +num_clicks 50 points_length: 4549 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(286) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.026810452342033386 and after 0.06256743520498276 +num_clicks 50 points_length: 11426 dynamic_size: 29 +filter out voxels: 25679 +filter out voxels: 2114 +First batch: fn: 0.9824, fp: 0.2128, label 0: tensor(333), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.011897947639226913 and after 0.2067835032939911 +num_clicks 50 points_length: 11060 dynamic_size: 35 +filter out voxels: 44066 +filter out voxels: 1647 +First batch: fn: 0.9612, fp: 0.3105, label 0: tensor(236), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.026492275297641754 and after 0.24270105361938477 +num_clicks 50 points_length: 10931 dynamic_size: 12 +filter out voxels: 52348 +filter out voxels: 1421 +First batch: fn: 0.9445, fp: 0.3538, label 0: tensor(172), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03014908917248249 and after 0.2661994695663452 +num_clicks 50 points_length: 10815 dynamic_size: 47 +filter out voxels: 57916 +filter out voxels: 1362 +First batch: fn: 0.9302, fp: 0.3780, label 0: tensor(146), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03013894520699978 and after 0.28633928298950195 +num_clicks 50 points_length: 10800 dynamic_size: 13 +filter out voxels: 60784 +filter out voxels: 1325 +First batch: fn: 0.9044, fp: 0.3878, label 0: tensor(62), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.035076804459095 and after 0.3071814775466919 +num_clicks 50 points_length: 10562 dynamic_size: 26 +filter out voxels: 62264 +filter out voxels: 1200 +First batch: fn: 0.8757, fp: 0.3935, label 0: tensor(81), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03847753256559372 and after 0.314317911863327 +num_clicks 50 points_length: 10589 dynamic_size: 9 +filter out voxels: 62244 +filter out voxels: 1188 +First batch: fn: 0.8661, fp: 0.3886, label 0: tensor(69), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03705274686217308 and after 0.32853442430496216 +num_clicks 50 points_length: 10505 dynamic_size: 19 +filter out voxels: 62490 +filter out voxels: 1170 +First batch: fn: 0.8421, fp: 0.3892, label 0: tensor(79), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.034796297550201416 and after 0.3448748290538788 +num_clicks 50 points_length: 10547 dynamic_size: 47 +filter out voxels: 62125 +filter out voxels: 1172 +First batch: fn: 0.8120, fp: 0.3853, label 0: tensor(73), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04012477770447731 and after 0.3624172806739807 +num_clicks 50 points_length: 10512 dynamic_size: 10 +filter out voxels: 60847 +filter out voxels: 1143 +First batch: fn: 0.7832, fp: 0.3795, label 0: tensor(59), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04874996095895767 and after 0.3653797507286072 +epoch: 3/20, iter: 21/42: loss:4.5845: rank:-1 +[22:27:17.934] epoch: 3/20, iter: 21/42: loss:4.5845: rank:-1 +num_clicks 50 points_length: 84953 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4361284077167511 and after 0.264426052570343 +num_clicks 50 points_length: 73558 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 1368 +First batch: fn: 0.8434, fp: 0.0010, label 0: tensor(5), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5058338642120361 and after 0.3288436233997345 +num_clicks 50 points_length: 67634 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 709 +First batch: fn: 0.8164, fp: 0.0023, label 0: tensor(1), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5192438364028931 and after 0.3646741211414337 +num_clicks 50 points_length: 64840 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 546 +First batch: fn: 0.7948, fp: 0.0024, label 0: tensor(1), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5400961637496948 and after 0.4091786742210388 +num_clicks 50 points_length: 60701 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 407 +First batch: fn: 0.7719, fp: 0.0055, label 0: tensor(1), label 1: tensor(544) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5516848564147949 and after 0.4253317713737488 +num_clicks 50 points_length: 58736 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 310 +First batch: fn: 0.7671, fp: 0.0065, label 0: tensor(0), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5562798380851746 and after 0.44147706031799316 +num_clicks 50 points_length: 57858 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 276 +First batch: fn: 0.7509, fp: 0.0071, label 0: tensor(0), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5580769181251526 and after 0.4864180088043213 +num_clicks 50 points_length: 54203 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 247 +First batch: fn: 0.7157, fp: 0.0108, label 0: tensor(3), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5716155767440796 and after 0.5097077488899231 +num_clicks 50 points_length: 52440 dynamic_size: 49 +filter out voxels: 31 +filter out voxels: 237 +First batch: fn: 0.6939, fp: 0.0157, label 0: tensor(32), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5637309551239014 and after 0.5399383306503296 +num_clicks 50 points_length: 50450 dynamic_size: 35 +filter out voxels: 22 +filter out voxels: 211 +First batch: fn: 0.6610, fp: 0.0162, label 0: tensor(15), label 1: tensor(534) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5833815932273865 and after 0.5617856979370117 +num_clicks 50 points_length: 48088 dynamic_size: 17 +filter out voxels: 30 +filter out voxels: 181 +First batch: fn: 0.6459, fp: 0.0165, label 0: tensor(22), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5728899240493774 and after 0.5823639631271362 +epoch: 3/20, iter: 22/42: loss:2.4453: rank:-1 +[22:27:35.537] epoch: 3/20, iter: 22/42: loss:2.4453: rank:-1 +num_clicks 50 points_length: 44366 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35323891043663025 and after 0.3633609712123871 +num_clicks 50 points_length: 22299 dynamic_size: 26 +filter out voxels: 1 +filter out voxels: 14081 +First batch: fn: 0.3523, fp: 0.1503, label 0: tensor(509), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4028488099575043 and after 0.40643876791000366 +num_clicks 50 points_length: 15512 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 16727 +First batch: fn: 0.2699, fp: 0.0797, label 0: tensor(507), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41128256916999817 and after 0.42392072081565857 +num_clicks 50 points_length: 12917 dynamic_size: 22 +filter out voxels: 71 +filter out voxels: 19225 +First batch: fn: 0.2388, fp: 0.0524, label 0: tensor(384), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41213878989219666 and after 0.4301213026046753 +num_clicks 50 points_length: 12561 dynamic_size: 28 +filter out voxels: 64 +filter out voxels: 20727 +First batch: fn: 0.2168, fp: 0.0664, label 0: tensor(398), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4130084812641144 and after 0.44472530484199524 +num_clicks 50 points_length: 11217 dynamic_size: 10 +filter out voxels: 62 +filter out voxels: 21301 +First batch: fn: 0.1884, fp: 0.0645, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41469159722328186 and after 0.45152226090431213 +num_clicks 50 points_length: 10275 dynamic_size: 36 +filter out voxels: 58 +filter out voxels: 21941 +First batch: fn: 0.1643, fp: 0.0673, label 0: tensor(385), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41425591707229614 and after 0.458040326833725 +num_clicks 50 points_length: 9774 dynamic_size: 16 +filter out voxels: 66 +filter out voxels: 22736 +First batch: fn: 0.1492, fp: 0.0711, label 0: tensor(503), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41449108719825745 and after 0.4632120728492737 +num_clicks 50 points_length: 9112 dynamic_size: 30 +filter out voxels: 68 +filter out voxels: 23105 +First batch: fn: 0.1251, fp: 0.0803, label 0: tensor(518), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4160290062427521 and after 0.47248804569244385 +num_clicks 50 points_length: 8283 dynamic_size: 50 +filter out voxels: 66 +filter out voxels: 22667 +First batch: fn: 0.1026, fp: 0.0841, label 0: tensor(519), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.415718674659729 and after 0.47676748037338257 +num_clicks 50 points_length: 7807 dynamic_size: 5 +filter out voxels: 62 +filter out voxels: 23043 +First batch: fn: 0.0841, fp: 0.0919, label 0: tensor(502), label 1: tensor(483) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41607755422592163 and after 0.4777239263057709 +epoch: 3/20, iter: 23/42: loss:4.8464: rank:-1 +[22:28:02.240] epoch: 3/20, iter: 23/42: loss:4.8464: rank:-1 +num_clicks 50 points_length: 3144 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(269) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.049571387469768524 and after 0.1710020899772644 +num_clicks 50 points_length: 12821 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 8761 +First batch: fn: 0.7267, fp: 1.9859, label 0: tensor(335), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05682561546564102 and after 0.2431761473417282 +num_clicks 50 points_length: 19222 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 13198 +First batch: fn: 0.3367, fp: 3.7253, label 0: tensor(317), label 1: tensor(242) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07435833662748337 and after 0.2684059143066406 +num_clicks 50 points_length: 18042 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 13168 +First batch: fn: 0.2320, fp: 3.6141, label 0: tensor(314), label 1: tensor(271) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06968337297439575 and after 0.2748222053050995 +num_clicks 50 points_length: 19875 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 14716 +First batch: fn: 0.1171, fp: 3.7515, label 0: tensor(483), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07444100826978683 and after 0.2860090732574463 +num_clicks 50 points_length: 19423 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 14313 +First batch: fn: 0.0994, fp: 3.5283, label 0: tensor(469), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07519001513719559 and after 0.2817569375038147 +num_clicks 50 points_length: 19926 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 14877 +First batch: fn: 0.0877, fp: 3.6641, label 0: tensor(415), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07392103970050812 and after 0.2835988998413086 +num_clicks 50 points_length: 19277 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 14905 +First batch: fn: 0.0687, fp: 3.7826, label 0: tensor(459), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0727163702249527 and after 0.2875517010688782 +num_clicks 50 points_length: 19898 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 15648 +First batch: fn: 0.0663, fp: 3.5749, label 0: tensor(437), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07421793043613434 and after 0.28436994552612305 +num_clicks 50 points_length: 19555 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 15529 +First batch: fn: 0.0632, fp: 3.7474, label 0: tensor(502), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07258136570453644 and after 0.2900373339653015 +num_clicks 50 points_length: 18538 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 14856 +First batch: fn: 0.0610, fp: 3.7081, label 0: tensor(459), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07268829643726349 and after 0.2884540557861328 +epoch: 3/20, iter: 24/42: loss:3.8888: rank:-1 +[22:28:19.756] epoch: 3/20, iter: 24/42: loss:3.8888: rank:-1 +num_clicks 50 points_length: 8724 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(308) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3726160526275635 and after 0.6385400295257568 +num_clicks 50 points_length: 5861 dynamic_size: 29 +filter out voxels: 33 +filter out voxels: 1919 +First batch: fn: 0.5277, fp: 0.1441, label 0: tensor(69), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4223266839981079 and after 0.7585570812225342 +num_clicks 50 points_length: 3838 dynamic_size: 4 +filter out voxels: 1 +filter out voxels: 564 +First batch: fn: 0.2861, fp: 0.1538, label 0: tensor(212), label 1: tensor(326) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45085611939430237 and after 0.800469696521759 +num_clicks 50 points_length: 2994 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 392 +First batch: fn: 0.2139, fp: 0.1293, label 0: tensor(193), label 1: tensor(280) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.448384165763855 and after 0.8303838968276978 +num_clicks 50 points_length: 2512 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 354 +First batch: fn: 0.1283, fp: 0.1597, label 0: tensor(268), label 1: tensor(206) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4674888849258423 and after 0.8390522599220276 +num_clicks 50 points_length: 2444 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 179 +First batch: fn: 0.0961, fp: 0.1841, label 0: tensor(311), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.478152871131897 and after 0.843183159828186 +num_clicks 50 points_length: 2391 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 176 +First batch: fn: 0.0804, fp: 0.1937, label 0: tensor(267), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4813058376312256 and after 0.8486742377281189 +num_clicks 50 points_length: 2229 dynamic_size: 33 +filter out voxels: 1 +filter out voxels: 169 +First batch: fn: 0.0710, fp: 0.1845, label 0: tensor(284), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47447896003723145 and after 0.8519335985183716 +num_clicks 50 points_length: 2100 dynamic_size: 19 +filter out voxels: 2 +filter out voxels: 179 +First batch: fn: 0.0679, fp: 0.1729, label 0: tensor(230), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47813716530799866 and after 0.853630781173706 +num_clicks 50 points_length: 2070 dynamic_size: 48 +filter out voxels: 2 +filter out voxels: 172 +First batch: fn: 0.0667, fp: 0.1706, label 0: tensor(300), label 1: tensor(193) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4804134964942932 and after 0.8562037944793701 +num_clicks 50 points_length: 2048 dynamic_size: 29 +filter out voxels: 2 +filter out voxels: 164 +First batch: fn: 0.0617, fp: 0.1731, label 0: tensor(357), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48768946528434753 and after 0.8581924438476562 +epoch: 3/20, iter: 25/42: loss:1.9328: rank:-1 +[22:28:35.325] epoch: 3/20, iter: 25/42: loss:1.9328: rank:-1 +num_clicks 50 points_length: 650 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09728850424289703 and after 0.42648059129714966 +num_clicks 50 points_length: 859 dynamic_size: 30 +filter out voxels: 2051 +filter out voxels: 430 +First batch: fn: 0.6272, fp: 0.5744, label 0: tensor(16), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09816741198301315 and after 0.6064397096633911 +num_clicks 50 points_length: 569 dynamic_size: 11 +filter out voxels: 2156 +filter out voxels: 161 +First batch: fn: 0.3915, fp: 0.6323, label 0: tensor(2), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.10118036717176437 and after 0.6422164440155029 +num_clicks 50 points_length: 498 dynamic_size: 39 +filter out voxels: 2590 +filter out voxels: 18 +First batch: fn: 0.3029, fp: 0.7768, label 0: tensor(25), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12423016130924225 and after 0.6574665904045105 +num_clicks 50 points_length: 434 dynamic_size: 21 +filter out voxels: 2889 +filter out voxels: 0 +First batch: fn: 0.2489, fp: 0.8985, label 0: tensor(22), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11772435903549194 and after 0.6846213340759277 +num_clicks 50 points_length: 348 dynamic_size: 42 +filter out voxels: 3139 +filter out voxels: 0 +First batch: fn: 0.1767, fp: 1.0022, label 0: tensor(35), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1282104253768921 and after 0.7049691677093506 +num_clicks 50 points_length: 285 dynamic_size: 35 +filter out voxels: 3242 +filter out voxels: 0 +First batch: fn: 0.1219, fp: 1.0668, label 0: tensor(32), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1289224624633789 and after 0.713040292263031 +num_clicks 50 points_length: 290 dynamic_size: 15 +filter out voxels: 3233 +filter out voxels: 0 +First batch: fn: 0.0791, fp: 1.0839, label 0: tensor(14), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12558592855930328 and after 0.7160352468490601 +num_clicks 50 points_length: 280 dynamic_size: 36 +filter out voxels: 3224 +filter out voxels: 0 +First batch: fn: 0.0694, fp: 1.0990, label 0: tensor(38), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14306992292404175 and after 0.7220063209533691 +num_clicks 50 points_length: 276 dynamic_size: 15 +filter out voxels: 3166 +filter out voxels: 0 +First batch: fn: 0.0492, fp: 1.0912, label 0: tensor(32), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14304524660110474 and after 0.7254886627197266 +num_clicks 50 points_length: 276 dynamic_size: 10 +filter out voxels: 3124 +filter out voxels: 0 +First batch: fn: 0.0397, fp: 1.0828, label 0: tensor(15), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13313712179660797 and after 0.7240535020828247 +epoch: 3/20, iter: 26/42: loss:3.1812: rank:-1 +[22:28:45.019] epoch: 3/20, iter: 26/42: loss:3.1812: rank:-1 +num_clicks 50 points_length: 1254 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15872009098529816 and after 0.22180843353271484 +num_clicks 50 points_length: 3706 dynamic_size: 34 +filter out voxels: 8988 +filter out voxels: 2985 +First batch: fn: 0.7927, fp: 1.4132, label 0: tensor(18), label 1: tensor(228) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16743940114974976 and after 0.28578662872314453 +num_clicks 50 points_length: 4205 dynamic_size: 26 +filter out voxels: 12159 +filter out voxels: 3358 +First batch: fn: 0.6164, fp: 1.9859, label 0: tensor(23), label 1: tensor(181) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18069536983966827 and after 0.3054242730140686 +num_clicks 50 points_length: 4956 dynamic_size: 37 +filter out voxels: 12521 +filter out voxels: 4225 +First batch: fn: 0.4463, fp: 2.1691, label 0: tensor(31), label 1: tensor(312) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18671131134033203 and after 0.3199329376220703 +num_clicks 50 points_length: 5630 dynamic_size: 30 +filter out voxels: 11758 +filter out voxels: 5156 +First batch: fn: 0.3064, fp: 2.2255, label 0: tensor(29), label 1: tensor(181) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19336333870887756 and after 0.34317874908447266 +num_clicks 50 points_length: 5931 dynamic_size: 50 +filter out voxels: 10168 +filter out voxels: 5450 +First batch: fn: 0.1933, fp: 2.1874, label 0: tensor(50), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20662418007850647 and after 0.360176146030426 +num_clicks 50 points_length: 5890 dynamic_size: 33 +filter out voxels: 9358 +filter out voxels: 5431 +First batch: fn: 0.1300, fp: 2.1319, label 0: tensor(29), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2035467028617859 and after 0.37752053141593933 +num_clicks 50 points_length: 5870 dynamic_size: 41 +filter out voxels: 9171 +filter out voxels: 5459 +First batch: fn: 0.0215, fp: 2.1742, label 0: tensor(110), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2159644216299057 and after 0.38431888818740845 +num_clicks 50 points_length: 5961 dynamic_size: 49 +filter out voxels: 7913 +filter out voxels: 5570 +First batch: fn: 0.0097, fp: 2.0615, label 0: tensor(146), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2233038991689682 and after 0.38886910676956177 +num_clicks 50 points_length: 5913 dynamic_size: 16 +filter out voxels: 7313 +filter out voxels: 5523 +First batch: fn: 0.0098, fp: 2.0029, label 0: tensor(89), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2192826271057129 and after 0.38429105281829834 +num_clicks 50 points_length: 6093 dynamic_size: 19 +filter out voxels: 7365 +filter out voxels: 5705 +First batch: fn: 0.0095, fp: 2.0193, label 0: tensor(118), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21597948670387268 and after 0.38394320011138916 +epoch: 3/20, iter: 27/42: loss:3.2415: rank:-1 +[22:28:57.066] epoch: 3/20, iter: 27/42: loss:3.2415: rank:-1 +num_clicks 50 points_length: 13110 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(544) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4111820459365845 and after 0.4474017918109894 +num_clicks 50 points_length: 11274 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4178, fp: 0.4421, label 0: tensor(209), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47555163502693176 and after 0.5501473546028137 +num_clicks 50 points_length: 9992 dynamic_size: 1 +filter out voxels: 75 +filter out voxels: 0 +First batch: fn: 0.2656, fp: 0.4966, label 0: tensor(86), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4732894003391266 and after 0.5909751653671265 +num_clicks 50 points_length: 9918 dynamic_size: 9 +filter out voxels: 82 +filter out voxels: 0 +First batch: fn: 0.1692, fp: 0.5873, label 0: tensor(249), label 1: tensor(430) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4921303987503052 and after 0.6065335273742676 +num_clicks 50 points_length: 10743 dynamic_size: 6 +filter out voxels: 79 +filter out voxels: 0 +First batch: fn: 0.1224, fp: 0.6970, label 0: tensor(311), label 1: tensor(350) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5073422193527222 and after 0.6365309953689575 +num_clicks 50 points_length: 10031 dynamic_size: 23 +filter out voxels: 103 +filter out voxels: 0 +First batch: fn: 0.0881, fp: 0.6770, label 0: tensor(446), label 1: tensor(251) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5239369869232178 and after 0.6465697884559631 +num_clicks 50 points_length: 9778 dynamic_size: 6 +filter out voxels: 108 +filter out voxels: 0 +First batch: fn: 0.0672, fp: 0.6786, label 0: tensor(395), label 1: tensor(280) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5119353532791138 and after 0.6638928055763245 +num_clicks 50 points_length: 9607 dynamic_size: 31 +filter out voxels: 111 +filter out voxels: 0 +First batch: fn: 0.0584, fp: 0.6744, label 0: tensor(442), label 1: tensor(253) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5305057764053345 and after 0.6802102327346802 +num_clicks 50 points_length: 9654 dynamic_size: 13 +filter out voxels: 123 +filter out voxels: 0 +First batch: fn: 0.0477, fp: 0.6886, label 0: tensor(512), label 1: tensor(236) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.536612868309021 and after 0.6928013563156128 +num_clicks 50 points_length: 9561 dynamic_size: 47 +filter out voxels: 123 +filter out voxels: 0 +First batch: fn: 0.0414, fp: 0.6879, label 0: tensor(545), label 1: tensor(235) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.535111665725708 and after 0.7066954970359802 +num_clicks 50 points_length: 9309 dynamic_size: 46 +filter out voxels: 123 +filter out voxels: 0 +First batch: fn: 0.0424, fp: 0.6677, label 0: tensor(541), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5422040820121765 and after 0.7192120552062988 +epoch: 3/20, iter: 28/42: loss:2.4812: rank:-1 +[22:29:18.581] epoch: 3/20, iter: 28/42: loss:2.4812: rank:-1 +num_clicks 50 points_length: 239 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25118154287338257 and after 0.12235239148139954 +num_clicks 50 points_length: 2963 dynamic_size: 4 +filter out voxels: 874 +filter out voxels: 2140 +First batch: fn: 0.9139, fp: 0.0134, label 0: tensor(0), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24137432873249054 and after 0.14407184720039368 +num_clicks 50 points_length: 3680 dynamic_size: 40 +filter out voxels: 691 +filter out voxels: 2723 +First batch: fn: 0.8916, fp: 0.0087, label 0: tensor(0), label 1: tensor(172) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24785402417182922 and after 0.14588525891304016 +num_clicks 50 points_length: 3550 dynamic_size: 36 +filter out voxels: 699 +filter out voxels: 2641 +First batch: fn: 0.8949, fp: 0.0087, label 0: tensor(0), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2451179176568985 and after 0.15525569021701813 +num_clicks 50 points_length: 3552 dynamic_size: 4 +filter out voxels: 655 +filter out voxels: 2674 +First batch: fn: 0.8804, fp: 0.0083, label 0: tensor(0), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24867971241474152 and after 0.15152738988399506 +num_clicks 50 points_length: 3839 dynamic_size: 31 +filter out voxels: 626 +filter out voxels: 2920 +First batch: fn: 0.8812, fp: 0.0079, label 0: tensor(0), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2523515522480011 and after 0.15711024403572083 +num_clicks 50 points_length: 3573 dynamic_size: 23 +filter out voxels: 640 +filter out voxels: 2703 +First batch: fn: 0.8772, fp: 0.0080, label 0: tensor(1), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25047996640205383 and after 0.15936526656150818 +num_clicks 50 points_length: 3641 dynamic_size: 42 +filter out voxels: 556 +filter out voxels: 2758 +First batch: fn: 0.8734, fp: 0.0073, label 0: tensor(0), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2574480175971985 and after 0.16643677651882172 +num_clicks 50 points_length: 3510 dynamic_size: 14 +filter out voxels: 608 +filter out voxels: 2645 +First batch: fn: 0.8663, fp: 0.0078, label 0: tensor(0), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2547321617603302 and after 0.17597806453704834 +num_clicks 50 points_length: 3708 dynamic_size: 42 +filter out voxels: 521 +filter out voxels: 2812 +First batch: fn: 0.8510, fp: 0.0073, label 0: tensor(0), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26178961992263794 and after 0.1766592115163803 +num_clicks 50 points_length: 3574 dynamic_size: 46 +filter out voxels: 527 +filter out voxels: 2697 +First batch: fn: 0.8519, fp: 0.0074, label 0: tensor(1), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26246383786201477 and after 0.1802556961774826 +epoch: 3/20, iter: 29/42: loss:3.7755: rank:-1 +[22:29:30.861] epoch: 3/20, iter: 29/42: loss:3.7755: rank:-1 +num_clicks 50 points_length: 3907 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(402) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28098592162132263 and after 0.5650975108146667 +num_clicks 50 points_length: 2051 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7284, fp: 0.0407, label 0: tensor(0), label 1: tensor(382) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38443905115127563 and after 0.682249903678894 +num_clicks 50 points_length: 1822 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5018, fp: 0.1973, label 0: tensor(3), label 1: tensor(370) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4472120404243469 and after 0.7250701189041138 +num_clicks 50 points_length: 1734 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3098, fp: 0.4117, label 0: tensor(38), label 1: tensor(349) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44836342334747314 and after 0.7424337863922119 +num_clicks 50 points_length: 1848 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1920, fp: 0.5115, label 0: tensor(53), label 1: tensor(310) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.444937527179718 and after 0.7514901757240295 +num_clicks 50 points_length: 1831 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1239, fp: 0.5912, label 0: tensor(117), label 1: tensor(269) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4343142509460449 and after 0.7664908170700073 +num_clicks 50 points_length: 1773 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0878, fp: 0.5767, label 0: tensor(135), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43301746249198914 and after 0.7738529443740845 +num_clicks 50 points_length: 1704 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0840, fp: 0.5533, label 0: tensor(153), label 1: tensor(203) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43587666749954224 and after 0.7805277109146118 +num_clicks 50 points_length: 1665 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0828, fp: 0.5261, label 0: tensor(174), label 1: tensor(165) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4256199300289154 and after 0.7865031957626343 +num_clicks 50 points_length: 1683 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0881, fp: 0.4765, label 0: tensor(192), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43428975343704224 and after 0.7907047271728516 +num_clicks 50 points_length: 1630 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0798, fp: 0.4764, label 0: tensor(117), label 1: tensor(221) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44184648990631104 and after 0.7882511019706726 +epoch: 3/20, iter: 30/42: loss:2.0269: rank:-1 +[22:29:46.163] epoch: 3/20, iter: 30/42: loss:2.0269: rank:-1 +num_clicks 50 points_length: 3522 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2811375856399536 and after 0.4131987988948822 +num_clicks 50 points_length: 2093 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 149 +First batch: fn: 0.9056, fp: 0.0012, label 0: tensor(0), label 1: tensor(445) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40203171968460083 and after 0.5277842879295349 +num_clicks 50 points_length: 1645 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8566, fp: 0.0016, label 0: tensor(0), label 1: tensor(398) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47948288917541504 and after 0.5582482218742371 +num_clicks 50 points_length: 1342 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8386, fp: 0.0015, label 0: tensor(0), label 1: tensor(276) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44486182928085327 and after 0.5761409997940063 +num_clicks 50 points_length: 1044 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8355, fp: 0.0015, label 0: tensor(0), label 1: tensor(288) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4413074851036072 and after 0.5877054929733276 +num_clicks 50 points_length: 864 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8331, fp: 0.0015, label 0: tensor(0), label 1: tensor(229) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.436126172542572 and after 0.5957221388816833 +num_clicks 50 points_length: 786 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8283, fp: 0.0015, label 0: tensor(0), label 1: tensor(220) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43298378586769104 and after 0.6020364761352539 +num_clicks 50 points_length: 703 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8261, fp: 0.0016, label 0: tensor(0), label 1: tensor(226) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4378255009651184 and after 0.6087859869003296 +num_clicks 50 points_length: 666 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8195, fp: 0.0018, label 0: tensor(0), label 1: tensor(205) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45790746808052063 and after 0.6099561452865601 +num_clicks 50 points_length: 690 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8161, fp: 0.0020, label 0: tensor(0), label 1: tensor(220) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42400896549224854 and after 0.6141460537910461 +num_clicks 50 points_length: 644 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8138, fp: 0.0019, label 0: tensor(0), label 1: tensor(172) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43750694394111633 and after 0.6176513433456421 +epoch: 3/20, iter: 31/42: loss:3.2159: rank:-1 +[22:30:04.172] epoch: 3/20, iter: 31/42: loss:3.2159: rank:-1 +num_clicks 50 points_length: 16875 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(428) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6418261528015137 and after 0.5826048851013184 +num_clicks 50 points_length: 9542 dynamic_size: 27 +filter out voxels: 165 +filter out voxels: 2603 +First batch: fn: 0.3897, fp: 0.0829, label 0: tensor(391), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6240901947021484 and after 0.6652616262435913 +num_clicks 50 points_length: 6723 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 3567 +First batch: fn: 0.2103, fp: 0.1227, label 0: tensor(414), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.619163990020752 and after 0.7203013896942139 +num_clicks 50 points_length: 5351 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 3115 +First batch: fn: 0.0808, fp: 0.1842, label 0: tensor(517), label 1: tensor(333) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6399815082550049 and after 0.7610129117965698 +num_clicks 50 points_length: 5283 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 2580 +First batch: fn: 0.0391, fp: 0.2226, label 0: tensor(515), label 1: tensor(186) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.668140709400177 and after 0.7861959934234619 +num_clicks 50 points_length: 4955 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 1714 +First batch: fn: 0.0314, fp: 0.2140, label 0: tensor(481), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6822459101676941 and after 0.8156931400299072 +num_clicks 50 points_length: 4514 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 1039 +First batch: fn: 0.0248, fp: 0.1988, label 0: tensor(490), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6897988319396973 and after 0.8286250233650208 +num_clicks 50 points_length: 4182 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 976 +First batch: fn: 0.0254, fp: 0.1817, label 0: tensor(467), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6919897794723511 and after 0.8368455767631531 +num_clicks 50 points_length: 4057 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 953 +First batch: fn: 0.0229, fp: 0.1780, label 0: tensor(488), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.695472002029419 and after 0.8438816666603088 +num_clicks 50 points_length: 3779 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 900 +First batch: fn: 0.0230, fp: 0.1642, label 0: tensor(500), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6959212422370911 and after 0.8513364195823669 +num_clicks 50 points_length: 3496 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 878 +First batch: fn: 0.0254, fp: 0.1478, label 0: tensor(453), label 1: tensor(161) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6977481842041016 and after 0.8541441559791565 +epoch: 3/20, iter: 32/42: loss:1.554: rank:-1 +[22:30:24.451] epoch: 3/20, iter: 32/42: loss:1.554: rank:-1 +num_clicks 50 points_length: 4057 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(296) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39404627680778503 and after 0.6060073375701904 +num_clicks 50 points_length: 4988 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 26 +First batch: fn: 0.4602, fp: 0.0190, label 0: tensor(95), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5030086636543274 and after 0.6065883636474609 +num_clicks 50 points_length: 8418 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3838, fp: 0.0241, label 0: tensor(118), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4833865761756897 and after 0.6173330545425415 +num_clicks 50 points_length: 8933 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3498, fp: 0.0284, label 0: tensor(79), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.49843889474868774 and after 0.6782695055007935 +num_clicks 50 points_length: 6566 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2950, fp: 0.0344, label 0: tensor(37), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5231357216835022 and after 0.7651344537734985 +num_clicks 50 points_length: 3475 dynamic_size: 33 +filter out voxels: 8 +filter out voxels: 0 +First batch: fn: 0.2531, fp: 0.0439, label 0: tensor(28), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6119182109832764 and after 0.822329580783844 +num_clicks 50 points_length: 2030 dynamic_size: 47 +filter out voxels: 11 +filter out voxels: 0 +First batch: fn: 0.2212, fp: 0.0517, label 0: tensor(9), label 1: tensor(419) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6893191337585449 and after 0.8582457900047302 +num_clicks 50 points_length: 1369 dynamic_size: 29 +filter out voxels: 44 +filter out voxels: 0 +First batch: fn: 0.1930, fp: 0.0559, label 0: tensor(5), label 1: tensor(348) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7287024259567261 and after 0.8677307367324829 +num_clicks 50 points_length: 1320 dynamic_size: 29 +filter out voxels: 44 +filter out voxels: 0 +First batch: fn: 0.1667, fp: 0.0607, label 0: tensor(9), label 1: tensor(386) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7256901264190674 and after 0.8786871433258057 +num_clicks 50 points_length: 1153 dynamic_size: 50 +filter out voxels: 40 +filter out voxels: 0 +First batch: fn: 0.1542, fp: 0.0637, label 0: tensor(13), label 1: tensor(316) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7294561266899109 and after 0.8841346502304077 +num_clicks 50 points_length: 1099 dynamic_size: 26 +filter out voxels: 39 +filter out voxels: 0 +First batch: fn: 0.1393, fp: 0.0696, label 0: tensor(13), label 1: tensor(325) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.729594349861145 and after 0.892887532711029 +epoch: 3/20, iter: 33/42: loss:1.8738: rank:-1 +[22:30:42.013] epoch: 3/20, iter: 33/42: loss:1.8738: rank:-1 +num_clicks 50 points_length: 740 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1849948614835739 and after 0.180857315659523 +num_clicks 50 points_length: 2174 dynamic_size: 24 +filter out voxels: 10592 +filter out voxels: 800 +First batch: fn: 1.0000, fp: 1.6548, label 0: tensor(16), label 1: tensor(270) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2671992778778076 and after 0.3660454750061035 +num_clicks 50 points_length: 926 dynamic_size: 28 +filter out voxels: 2892 +filter out voxels: 0 +First batch: fn: 0.8730, fp: 0.4688, label 0: tensor(10), label 1: tensor(207) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26646044850349426 and after 0.4661909341812134 +num_clicks 50 points_length: 689 dynamic_size: 36 +filter out voxels: 2179 +filter out voxels: 0 +First batch: fn: 0.7598, fp: 0.3937, label 0: tensor(14), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2698795199394226 and after 0.5262913107872009 +num_clicks 50 points_length: 598 dynamic_size: 26 +filter out voxels: 1511 +filter out voxels: 0 +First batch: fn: 0.6842, fp: 0.3256, label 0: tensor(6), label 1: tensor(170) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27741122245788574 and after 0.5892198085784912 +num_clicks 50 points_length: 521 dynamic_size: 30 +filter out voxels: 656 +filter out voxels: 0 +First batch: fn: 0.5896, fp: 0.2765, label 0: tensor(10), label 1: tensor(163) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27446088194847107 and after 0.6168090105056763 +num_clicks 50 points_length: 542 dynamic_size: 9 +filter out voxels: 206 +filter out voxels: 0 +First batch: fn: 0.5318, fp: 0.2530, label 0: tensor(1), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27661922574043274 and after 0.6422693133354187 +num_clicks 50 points_length: 527 dynamic_size: 16 +filter out voxels: 311 +filter out voxels: 0 +First batch: fn: 0.4410, fp: 0.3460, label 0: tensor(2), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2850918173789978 and after 0.6595505475997925 +num_clicks 50 points_length: 478 dynamic_size: 42 +filter out voxels: 589 +filter out voxels: 0 +First batch: fn: 0.3570, fp: 0.4814, label 0: tensor(31), label 1: tensor(176) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2910095155239105 and after 0.6792511940002441 +num_clicks 50 points_length: 466 dynamic_size: 6 +filter out voxels: 249 +filter out voxels: 0 +First batch: fn: 0.2788, fp: 0.5459, label 0: tensor(4), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28823086619377136 and after 0.6849327087402344 +num_clicks 50 points_length: 476 dynamic_size: 32 +filter out voxels: 246 +filter out voxels: 0 +First batch: fn: 0.2165, fp: 0.6340, label 0: tensor(28), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2891353666782379 and after 0.7059463262557983 +epoch: 3/20, iter: 34/42: loss:3.1986: rank:-1 +[22:30:52.615] epoch: 3/20, iter: 34/42: loss:3.1986: rank:-1 +num_clicks 50 points_length: 34046 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(544) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4372282922267914 and after 0.5320372581481934 +num_clicks 50 points_length: 18738 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 174 +First batch: fn: 0.7559, fp: 0.0006, label 0: tensor(55), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5459672212600708 and after 0.6195477843284607 +num_clicks 50 points_length: 13002 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 92 +First batch: fn: 0.7279, fp: 0.0019, label 0: tensor(150), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5622202157974243 and after 0.6372995972633362 +num_clicks 50 points_length: 11291 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 176 +First batch: fn: 0.7263, fp: 0.0018, label 0: tensor(209), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5636045932769775 and after 0.6514000296592712 +num_clicks 50 points_length: 10007 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 203 +First batch: fn: 0.7200, fp: 0.0017, label 0: tensor(119), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5828368067741394 and after 0.6678795218467712 +num_clicks 50 points_length: 9987 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 204 +First batch: fn: 0.6949, fp: 0.0014, label 0: tensor(114), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5855985879898071 and after 0.681311845779419 +num_clicks 50 points_length: 9933 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 192 +First batch: fn: 0.6740, fp: 0.0015, label 0: tensor(107), label 1: tensor(544) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6022666692733765 and after 0.7009220123291016 +num_clicks 50 points_length: 8648 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 186 +First batch: fn: 0.6519, fp: 0.0017, label 0: tensor(136), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6054785251617432 and after 0.7110894918441772 +num_clicks 50 points_length: 8032 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 199 +First batch: fn: 0.6399, fp: 0.0018, label 0: tensor(112), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6065794825553894 and after 0.7195969820022583 +num_clicks 50 points_length: 7457 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 198 +First batch: fn: 0.6304, fp: 0.0017, label 0: tensor(129), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6080020666122437 and after 0.7292313575744629 +num_clicks 50 points_length: 7220 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 197 +First batch: fn: 0.6150, fp: 0.0014, label 0: tensor(113), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6078312397003174 and after 0.7379831075668335 +epoch: 3/20, iter: 35/42: loss:2.5829: rank:-1 +[22:31:13.568] epoch: 3/20, iter: 35/42: loss:2.5829: rank:-1 +num_clicks 50 points_length: 18913 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7087669372558594 and after 0.7318021655082703 +num_clicks 50 points_length: 6073 dynamic_size: 9 +filter out voxels: 812 +filter out voxels: 0 +First batch: fn: 0.1205, fp: 0.2006, label 0: tensor(537), label 1: tensor(423) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7489558458328247 and after 0.770896315574646 +num_clicks 50 points_length: 4827 dynamic_size: 16 +filter out voxels: 450 +filter out voxels: 0 +First batch: fn: 0.0140, fp: 0.2412, label 0: tensor(512), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7859222888946533 and after 0.8011807799339294 +num_clicks 50 points_length: 4374 dynamic_size: 29 +filter out voxels: 454 +filter out voxels: 0 +First batch: fn: 0.0089, fp: 0.2223, label 0: tensor(526), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7948487401008606 and after 0.8207701444625854 +num_clicks 50 points_length: 3910 dynamic_size: 35 +filter out voxels: 423 +filter out voxels: 0 +First batch: fn: 0.0083, fp: 0.1984, label 0: tensor(535), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7996988296508789 and after 0.8480298519134521 +num_clicks 50 points_length: 3594 dynamic_size: 18 +filter out voxels: 393 +filter out voxels: 0 +First batch: fn: 0.0075, fp: 0.1825, label 0: tensor(551), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7969194650650024 and after 0.8552424907684326 +num_clicks 50 points_length: 3189 dynamic_size: 30 +filter out voxels: 371 +filter out voxels: 0 +First batch: fn: 0.0105, fp: 0.1581, label 0: tensor(530), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8019564151763916 and after 0.8702297210693359 +num_clicks 50 points_length: 3052 dynamic_size: 20 +filter out voxels: 348 +filter out voxels: 0 +First batch: fn: 0.0106, fp: 0.1508, label 0: tensor(547), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7975465059280396 and after 0.8775602579116821 +num_clicks 50 points_length: 2884 dynamic_size: 30 +filter out voxels: 331 +filter out voxels: 0 +First batch: fn: 0.0108, fp: 0.1416, label 0: tensor(476), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8091510534286499 and after 0.8885970115661621 +num_clicks 50 points_length: 2851 dynamic_size: 24 +filter out voxels: 326 +filter out voxels: 0 +First batch: fn: 0.0109, fp: 0.1399, label 0: tensor(468), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.814026951789856 and after 0.8950930833816528 +num_clicks 50 points_length: 2697 dynamic_size: 25 +filter out voxels: 318 +filter out voxels: 0 +First batch: fn: 0.0125, fp: 0.1301, label 0: tensor(429), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8147996068000793 and after 0.897066056728363 +epoch: 3/20, iter: 36/42: loss:1.6166: rank:-1 +[22:31:34.950] epoch: 3/20, iter: 36/42: loss:1.6166: rank:-1 +num_clicks 50 points_length: 1749 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13841257989406586 and after 0.18496020138263702 +num_clicks 50 points_length: 6173 dynamic_size: 39 +filter out voxels: 3586 +filter out voxels: 12 +First batch: fn: 0.0846, fp: 3.4448, label 0: tensor(533), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2628372013568878 and after 0.3774808347225189 +num_clicks 50 points_length: 1852 dynamic_size: 48 +filter out voxels: 736 +filter out voxels: 0 +First batch: fn: 0.0417, fp: 1.0172, label 0: tensor(339), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3213112950325012 and after 0.4194736182689667 +num_clicks 50 points_length: 1726 dynamic_size: 1 +filter out voxels: 893 +filter out voxels: 0 +First batch: fn: 0.0452, fp: 0.9417, label 0: tensor(247), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3375682234764099 and after 0.45320308208465576 +num_clicks 50 points_length: 1625 dynamic_size: 11 +filter out voxels: 926 +filter out voxels: 0 +First batch: fn: 0.0423, fp: 0.8868, label 0: tensor(223), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34676507115364075 and after 0.4711218476295471 +num_clicks 50 points_length: 1565 dynamic_size: 1 +filter out voxels: 959 +filter out voxels: 0 +First batch: fn: 0.0480, fp: 0.8468, label 0: tensor(171), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3461459279060364 and after 0.4679296314716339 +num_clicks 50 points_length: 1677 dynamic_size: 48 +filter out voxels: 1057 +filter out voxels: 0 +First batch: fn: 0.0412, fp: 0.9177, label 0: tensor(252), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34496748447418213 and after 0.5007233619689941 +num_clicks 50 points_length: 1444 dynamic_size: 17 +filter out voxels: 866 +filter out voxels: 0 +First batch: fn: 0.0463, fp: 0.7793, label 0: tensor(175), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3534097671508789 and after 0.5098652839660645 +num_clicks 50 points_length: 1430 dynamic_size: 42 +filter out voxels: 859 +filter out voxels: 0 +First batch: fn: 0.0423, fp: 0.7753, label 0: tensor(240), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.359369695186615 and after 0.534143328666687 +num_clicks 50 points_length: 1296 dynamic_size: 18 +filter out voxels: 724 +filter out voxels: 0 +First batch: fn: 0.0435, fp: 0.6975, label 0: tensor(198), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39440494775772095 and after 0.5732572078704834 +num_clicks 50 points_length: 883 dynamic_size: 41 +filter out voxels: 319 +filter out voxels: 0 +First batch: fn: 0.0423, fp: 0.4626, label 0: tensor(235), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40217357873916626 and after 0.5999323129653931 +epoch: 3/20, iter: 37/42: loss:3.0735: rank:-1 +[22:31:50.063] epoch: 3/20, iter: 37/42: loss:3.0735: rank:-1 +num_clicks 50 points_length: 47467 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5944728255271912 and after 0.6773111820220947 +num_clicks 50 points_length: 22874 dynamic_size: 36 +filter out voxels: 6764 +filter out voxels: 57 +First batch: fn: 0.2953, fp: 0.1866, label 0: tensor(446), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7766585946083069 and after 0.8214248418807983 +num_clicks 50 points_length: 13423 dynamic_size: 43 +filter out voxels: 2324 +filter out voxels: 0 +First batch: fn: 0.1716, fp: 0.1112, label 0: tensor(401), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8133014440536499 and after 0.8704391121864319 +num_clicks 50 points_length: 9263 dynamic_size: 15 +filter out voxels: 960 +filter out voxels: 0 +First batch: fn: 0.0950, fp: 0.1002, label 0: tensor(413), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8178166151046753 and after 0.8911025524139404 +num_clicks 50 points_length: 7149 dynamic_size: 21 +filter out voxels: 410 +filter out voxels: 0 +First batch: fn: 0.0391, fp: 0.1115, label 0: tensor(518), label 1: tensor(409) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8177153468132019 and after 0.9014341831207275 +num_clicks 50 points_length: 6362 dynamic_size: 35 +filter out voxels: 223 +filter out voxels: 0 +First batch: fn: 0.0115, fp: 0.1225, label 0: tensor(534), label 1: tensor(229) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8179444670677185 and after 0.9031246900558472 +num_clicks 50 points_length: 6838 dynamic_size: 10 +filter out voxels: 125 +filter out voxels: 0 +First batch: fn: 0.0079, fp: 0.1362, label 0: tensor(510), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8189448118209839 and after 0.9157954454421997 +num_clicks 50 points_length: 6265 dynamic_size: 42 +filter out voxels: 152 +filter out voxels: 0 +First batch: fn: 0.0078, fp: 0.1242, label 0: tensor(541), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.827918529510498 and after 0.9209238290786743 +num_clicks 50 points_length: 6075 dynamic_size: 15 +filter out voxels: 154 +filter out voxels: 0 +First batch: fn: 0.0048, fp: 0.1232, label 0: tensor(515), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8288668990135193 and after 0.9267094135284424 +num_clicks 50 points_length: 5530 dynamic_size: 37 +filter out voxels: 147 +filter out voxels: 0 +First batch: fn: 0.0046, fp: 0.1119, label 0: tensor(536), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8301916122436523 and after 0.9303941130638123 +num_clicks 50 points_length: 5374 dynamic_size: 45 +filter out voxels: 144 +filter out voxels: 18 +First batch: fn: 0.0047, fp: 0.1085, label 0: tensor(543), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8310071229934692 and after 0.9344915747642517 +epoch: 3/20, iter: 38/42: loss:1.7064: rank:-1 +[22:32:11.650] epoch: 3/20, iter: 38/42: loss:1.7064: rank:-1 +num_clicks 50 points_length: 1963 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07408622652292252 and after 0.13657809793949127 +num_clicks 50 points_length: 20955 dynamic_size: 50 +filter out voxels: 19500 +filter out voxels: 4395 +First batch: fn: 0.6152, fp: 3.0996, label 0: tensor(188), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09676133841276169 and after 0.21829035878181458 +num_clicks 50 points_length: 19784 dynamic_size: 48 +filter out voxels: 24902 +filter out voxels: 6019 +First batch: fn: 0.2241, fp: 3.6563, label 0: tensor(119), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11659232527017593 and after 0.2572754919528961 +num_clicks 50 points_length: 17642 dynamic_size: 43 +filter out voxels: 24600 +filter out voxels: 6697 +First batch: fn: 0.0210, fp: 3.8029, label 0: tensor(466), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12685221433639526 and after 0.3005487322807312 +num_clicks 50 points_length: 14734 dynamic_size: 10 +filter out voxels: 16189 +filter out voxels: 6303 +First batch: fn: 0.0162, fp: 2.9917, label 0: tensor(448), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13431605696678162 and after 0.31703656911849976 +num_clicks 50 points_length: 13236 dynamic_size: 39 +filter out voxels: 13869 +filter out voxels: 6945 +First batch: fn: 0.0070, fp: 2.8220, label 0: tensor(525), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1381864845752716 and after 0.3283563256263733 +num_clicks 50 points_length: 12807 dynamic_size: 28 +filter out voxels: 12591 +filter out voxels: 7703 +First batch: fn: 0.0014, fp: 2.6769, label 0: tensor(528), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12544530630111694 and after 0.3447824716567993 +num_clicks 50 points_length: 12220 dynamic_size: 27 +filter out voxels: 10084 +filter out voxels: 8103 +First batch: fn: 0.0018, fp: 2.4094, label 0: tensor(510), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13218049705028534 and after 0.35137882828712463 +num_clicks 50 points_length: 12142 dynamic_size: 33 +filter out voxels: 8881 +filter out voxels: 8559 +First batch: fn: 0.0034, fp: 2.2718, label 0: tensor(427), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1594069004058838 and after 0.35385382175445557 +num_clicks 50 points_length: 11148 dynamic_size: 16 +filter out voxels: 9386 +filter out voxels: 8198 +First batch: fn: 0.0004, fp: 2.3731, label 0: tensor(439), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14767619967460632 and after 0.3755200505256653 +num_clicks 50 points_length: 10471 dynamic_size: 19 +filter out voxels: 7410 +filter out voxels: 8091 +First batch: fn: 0.0024, fp: 2.0859, label 0: tensor(370), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.170152485370636 and after 0.3715435862541199 +epoch: 3/20, iter: 39/42: loss:3.5061: rank:-1 +[22:32:28.552] epoch: 3/20, iter: 39/42: loss:3.5061: rank:-1 +num_clicks 50 points_length: 179 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.003300921991467476 and after 0.015171270817518234 +num_clicks 50 points_length: 29871 dynamic_size: 2 +filter out voxels: 27967 +filter out voxels: 34258 +First batch: fn: 0.0112, fp: 166.8659, label 0: tensor(105), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0013207986485213041 and after 0.019113630056381226 +num_clicks 50 points_length: 29324 dynamic_size: 41 +filter out voxels: 27640 +filter out voxels: 47643 +First batch: fn: 0.0112, fp: 163.8101, label 0: tensor(142), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0006217401823960245 and after 0.02101622149348259 +num_clicks 50 points_length: 30780 dynamic_size: 47 +filter out voxels: 29739 +filter out voxels: 44017 +First batch: fn: 0.0112, fp: 171.9441, label 0: tensor(143), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0003427709743846208 and after 0.021727124229073524 +num_clicks 50 points_length: 30192 dynamic_size: 25 +filter out voxels: 29551 +filter out voxels: 42798 +First batch: fn: 0.0112, fp: 168.6592, label 0: tensor(118), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 6.837840919615701e-05 and after 0.022733163088560104 +num_clicks 50 points_length: 30030 dynamic_size: 41 +filter out voxels: 29662 +filter out voxels: 43164 +First batch: fn: 0.0112, fp: 167.7542, label 0: tensor(116), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.022821448743343353 +num_clicks 50 points_length: 30674 dynamic_size: 24 +filter out voxels: 30463 +filter out voxels: 41186 +First batch: fn: 0.1117, fp: 171.2514, label 0: tensor(72), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.022230682894587517 +num_clicks 50 points_length: 32070 dynamic_size: 7 +filter out voxels: 31909 +filter out voxels: 41893 +First batch: fn: 0.1788, fp: 178.9832, label 0: tensor(45), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.02199818193912506 +num_clicks 50 points_length: 33067 dynamic_size: 33 +filter out voxels: 32918 +filter out voxels: 41532 +First batch: fn: 0.1844, fp: 184.5475, label 0: tensor(67), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.021854881197214127 +num_clicks 50 points_length: 33221 dynamic_size: 29 +filter out voxels: 33077 +filter out voxels: 42081 +First batch: fn: 0.1732, fp: 185.4190, label 0: tensor(55), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.0222761370241642 +num_clicks 50 points_length: 32291 dynamic_size: 30 +filter out voxels: 32157 +filter out voxels: 41255 +First batch: fn: 0.1732, fp: 180.2235, label 0: tensor(51), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.021884331479668617 +epoch: 3/20, iter: 40/42: loss:4.5375: rank:-1 +[22:32:37.756] epoch: 3/20, iter: 40/42: loss:4.5375: rank:-1 +num_clicks 50 points_length: 13032 dynamic_size: 3 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7992388606071472 and after 0.8004001379013062 +num_clicks 50 points_length: 6385 dynamic_size: 6 +filter out voxels: 15 +First batch: fn: 0.0176, fp: 0.4723, label 0: tensor(506), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7698260545730591 and after 0.7871819138526917 +num_clicks 50 points_length: 7033 dynamic_size: 27 +filter out voxels: 0 +First batch: fn: 0.0019, fp: 0.5378, label 0: tensor(527), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7769924402236938 and after 0.8228629231452942 +num_clicks 50 points_length: 5597 dynamic_size: 42 +filter out voxels: 0 +First batch: fn: 0.0025, fp: 0.4270, label 0: tensor(541), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7823357582092285 and after 0.8426425457000732 +num_clicks 50 points_length: 4840 dynamic_size: 1 +filter out voxels: 0 +First batch: fn: 0.0056, fp: 0.3658, label 0: tensor(500), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7814724445343018 and after 0.8484174013137817 +num_clicks 50 points_length: 4631 dynamic_size: 48 +filter out voxels: 0 +First batch: fn: 0.0055, fp: 0.3498, label 0: tensor(547), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.779860258102417 and after 0.8610769510269165 +num_clicks 50 points_length: 4177 dynamic_size: 4 +filter out voxels: 0 +First batch: fn: 0.0067, fp: 0.3138, label 0: tensor(504), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7866261601448059 and after 0.8833628296852112 +num_clicks 50 points_length: 3424 dynamic_size: 1 +filter out voxels: 0 +First batch: fn: 0.0051, fp: 0.2577, label 0: tensor(501), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.802736222743988 and after 0.901884138584137 +num_clicks 50 points_length: 2812 dynamic_size: 31 +filter out voxels: 0 +First batch: fn: 0.0083, fp: 0.2075, label 0: tensor(546), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8061414361000061 and after 0.9096485376358032 +num_clicks 50 points_length: 2563 dynamic_size: 21 +filter out voxels: 0 +First batch: fn: 0.0100, fp: 0.1867, label 0: tensor(499), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8056346774101257 and after 0.9105777144432068 +num_clicks 50 points_length: 2537 dynamic_size: 15 +filter out voxels: 0 +First batch: fn: 0.0088, fp: 0.1859, label 0: tensor(444), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8064164519309998 and after 0.9140912890434265 +epoch: 3/20, iter: 41/42: loss:0.9648: rank:-1 +[22:32:46.666] epoch: 3/20, iter: 41/42: loss:0.9648: rank:-1 +current lr: 3.976240000000001e-05 +[22:32:46.667] - Train metrics: 3.0355256 +found empty patch +found empty patch +num_clicks 10 points_length: 2119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(190) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:32:50.411] dice before refine 0.05067344754934311 and after 0.1578492373228073, label 0: tensor(0, device='cuda:0'), label 1: tensor(190, device='cuda:0') +num_clicks 10 points_length: 19484 dynamic_size: 10 +filter out voxels: 17652 +First batch: fn: 0.1383, fp: 9.0566, label 0: tensor(232), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18073 dynamic_size: 10 +filter out voxels: 16359 +First batch: fn: 0.0439, fp: 8.4851, label 0: tensor(229), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19158 dynamic_size: 10 +filter out voxels: 17539 +First batch: fn: 0.0368, fp: 9.0042, label 0: tensor(279), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20081 dynamic_size: 10 +filter out voxels: 18795 +First batch: fn: 0.0444, fp: 9.4323, label 0: tensor(306), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19798 dynamic_size: 10 +filter out voxels: 18753 +First batch: fn: 0.0519, fp: 9.2912, label 0: tensor(216), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19851 dynamic_size: 10 +filter out voxels: 18889 +First batch: fn: 0.0505, fp: 9.3176, label 0: tensor(239), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19359 dynamic_size: 10 +filter out voxels: 18460 +First batch: fn: 0.0580, fp: 9.0779, label 0: tensor(180), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20452 dynamic_size: 10 +filter out voxels: 19510 +First batch: fn: 0.0434, fp: 9.6083, label 0: tensor(188), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20236 dynamic_size: 10 +filter out voxels: 19359 +First batch: fn: 0.0505, fp: 9.4993, label 0: tensor(174), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20503 dynamic_size: 10 +filter out voxels: 19657 +First batch: fn: 0.0538, fp: 9.6220, label 0: tensor(195), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:32:55.900] dice before refine 0.03471052274107933 and after 0.16276031732559204, label 0: tensor(195, device='cuda:0'), label 1: tensor(67, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4016 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(381) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:32:56.367] dice before refine 0.010606758296489716 and after 0.16615717113018036, label 0: tensor(0, device='cuda:0'), label 1: tensor(381, device='cuda:0') +num_clicks 10 points_length: 32459 dynamic_size: 10 +filter out voxels: 28466 +First batch: fn: 0.1947, fp: 7.8877, label 0: tensor(509), label 1: tensor(230) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34996 dynamic_size: 10 +filter out voxels: 32315 +First batch: fn: 0.1101, fp: 8.6041, label 0: tensor(510), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39865 dynamic_size: 10 +filter out voxels: 37577 +First batch: fn: 0.0772, fp: 9.8494, label 0: tensor(488), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42203 dynamic_size: 10 +filter out voxels: 40382 +First batch: fn: 0.0941, fp: 10.4146, label 0: tensor(391), label 1: tensor(199) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43852 dynamic_size: 10 +filter out voxels: 42112 +First batch: fn: 0.0789, fp: 10.8404, label 0: tensor(416), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42798 dynamic_size: 10 +filter out voxels: 41398 +First batch: fn: 0.0872, fp: 10.5697, label 0: tensor(353), label 1: tensor(157) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42307 dynamic_size: 10 +filter out voxels: 40989 +First batch: fn: 0.0954, fp: 10.4392, label 0: tensor(291), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42469 dynamic_size: 10 +filter out voxels: 41184 +First batch: fn: 0.0936, fp: 10.4813, label 0: tensor(301), label 1: tensor(192) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42513 dynamic_size: 10 +filter out voxels: 41195 +First batch: fn: 0.0854, fp: 10.5005, label 0: tensor(310), label 1: tensor(185) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41632 dynamic_size: 10 +filter out voxels: 40345 +First batch: fn: 0.0822, fp: 10.2844, label 0: tensor(328), label 1: tensor(177) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:04.442] dice before refine 0.0012828964972868562 and after 0.1539975255727768, label 0: tensor(328, device='cuda:0'), label 1: tensor(177, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 343 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:04.806] dice before refine 0.012280667200684547 and after 0.01500516664236784, label 0: tensor(0, device='cuda:0'), label 1: tensor(29, device='cuda:0') +num_clicks 10 points_length: 43850 dynamic_size: 10 +filter out voxels: 43287 +First batch: fn: 0.0262, fp: 127.8163, label 0: tensor(98), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42821 dynamic_size: 10 +filter out voxels: 42641 +First batch: fn: 0.0408, fp: 124.8018, label 0: tensor(77), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43000 dynamic_size: 10 +filter out voxels: 42881 +First batch: fn: 0.0525, fp: 125.3120, label 0: tensor(64), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42036 dynamic_size: 10 +filter out voxels: 41948 +First batch: fn: 0.1020, fp: 122.4519, label 0: tensor(37), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43178 dynamic_size: 10 +filter out voxels: 43048 +First batch: fn: 0.0321, fp: 125.8513, label 0: tensor(42), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42430 dynamic_size: 10 +filter out voxels: 42314 +First batch: fn: 0.0408, fp: 123.6618, label 0: tensor(54), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41780 dynamic_size: 10 +filter out voxels: 41681 +First batch: fn: 0.0525, fp: 121.7551, label 0: tensor(50), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42446 dynamic_size: 10 +filter out voxels: 42320 +First batch: fn: 0.0292, fp: 123.7201, label 0: tensor(66), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41543 dynamic_size: 10 +filter out voxels: 41410 +First batch: fn: 0.0292, fp: 121.0875, label 0: tensor(53), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41882 dynamic_size: 10 +filter out voxels: 41751 +First batch: fn: 0.0292, fp: 122.0758, label 0: tensor(48), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:08.206] dice before refine 0.008061837404966354 and after 0.015686459839344025, label 0: tensor(48, device='cuda:0'), label 1: tensor(10, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 2248 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:08.625] dice before refine 0.03355717286467552 and after 0.07158195972442627, label 0: tensor(0, device='cuda:0'), label 1: tensor(167, device='cuda:0') +num_clicks 10 points_length: 41504 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2883, fp: 18.1744, label 0: tensor(510), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34769 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1846, fp: 15.2820, label 0: tensor(510), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34445 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1481, fp: 15.1744, label 0: tensor(510), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34585 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1090, fp: 15.2758, label 0: tensor(510), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33219 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0965, fp: 14.6806, label 0: tensor(510), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33946 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0876, fp: 15.0129, label 0: tensor(510), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32610 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0770, fp: 14.4293, label 0: tensor(510), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31106 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0730, fp: 13.7642, label 0: tensor(510), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27873 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0618, fp: 12.3372, label 0: tensor(510), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26755 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0538, fp: 11.8479, label 0: tensor(510), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:16.452] dice before refine 0.04201629385352135 and after 0.14619684219360352, label 0: tensor(510, device='cuda:0'), label 1: tensor(44, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3675 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(297) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:16.872] dice before refine 0.0006339412066154182 and after 0.14574766159057617, label 0: tensor(0, device='cuda:0'), label 1: tensor(297, device='cuda:0') +num_clicks 10 points_length: 31369 dynamic_size: 10 +filter out voxels: 27491 +First batch: fn: 0.2718, fp: 8.2639, label 0: tensor(536), label 1: tensor(285) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34942 dynamic_size: 10 +filter out voxels: 32040 +First batch: fn: 0.1018, fp: 9.4063, label 0: tensor(510), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38820 dynamic_size: 10 +filter out voxels: 36683 +First batch: fn: 0.1056, fp: 10.4577, label 0: tensor(425), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38984 dynamic_size: 10 +filter out voxels: 37490 +First batch: fn: 0.1301, fp: 10.4778, label 0: tensor(250), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41143 dynamic_size: 10 +filter out voxels: 39597 +First batch: fn: 0.0882, fp: 11.1072, label 0: tensor(357), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39896 dynamic_size: 10 +filter out voxels: 38521 +First batch: fn: 0.1067, fp: 10.7494, label 0: tensor(208), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41465 dynamic_size: 10 +filter out voxels: 40123 +First batch: fn: 0.0939, fp: 11.1891, label 0: tensor(269), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41101 dynamic_size: 10 +filter out voxels: 39843 +First batch: fn: 0.1001, fp: 11.0838, label 0: tensor(257), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41513 dynamic_size: 10 +filter out voxels: 40265 +First batch: fn: 0.0876, fp: 11.2084, label 0: tensor(267), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40867 dynamic_size: 10 +filter out voxels: 39716 +First batch: fn: 0.0936, fp: 11.0267, label 0: tensor(294), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:23.804] dice before refine 0.004437049385160208 and after 0.1395905464887619, label 0: tensor(294, device='cuda:0'), label 1: tensor(122, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.05311215499585325 +[22:33:24.360] epoch: 3/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.05311215499585325 stich left and right side (total size): 1 +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:24.884] dice before refine 0.007550977170467377 and after 0.021138180047273636, label 0: tensor(0, device='cuda:0'), label 1: tensor(126, device='cuda:0') +num_clicks 10 points_length: 50105 dynamic_size: 10 +filter out voxels: 30212 +First batch: fn: 0.8277, fp: 15.1293, label 0: tensor(510), label 1: tensor(186) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 65034 dynamic_size: 10 +filter out voxels: 41675 +First batch: fn: 0.5567, fp: 20.1548, label 0: tensor(510), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 64998 dynamic_size: 10 +filter out voxels: 41746 +First batch: fn: 0.3669, fp: 20.3331, label 0: tensor(510), label 1: tensor(169) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 63793 dynamic_size: 10 +filter out voxels: 41445 +First batch: fn: 0.2443, fp: 20.0720, label 0: tensor(510), label 1: tensor(193) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 63306 dynamic_size: 10 +filter out voxels: 41864 +First batch: fn: 0.1710, fp: 19.9901, label 0: tensor(510), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60469 dynamic_size: 10 +filter out voxels: 40869 +First batch: fn: 0.1634, fp: 19.0943, label 0: tensor(510), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58738 dynamic_size: 10 +filter out voxels: 40810 +First batch: fn: 0.1404, fp: 18.5659, label 0: tensor(510), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56681 dynamic_size: 10 +filter out voxels: 40252 +First batch: fn: 0.1398, fp: 17.9115, label 0: tensor(510), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 55727 dynamic_size: 10 +filter out voxels: 40810 +First batch: fn: 0.1373, fp: 17.6102, label 0: tensor(510), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 55622 dynamic_size: 10 +filter out voxels: 41710 +First batch: fn: 0.1283, fp: 17.5857, label 0: tensor(510), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:32.511] dice before refine 0.010173802264034748 and after 0.09325601160526276, label 0: tensor(510, device='cuda:0'), label 1: tensor(54, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:32.880] dice before refine 0.056770388036966324 and after 0.08104941993951797, label 0: tensor(0, device='cuda:0'), label 1: tensor(111, device='cuda:0') +num_clicks 10 points_length: 43924 dynamic_size: 10 +filter out voxels: 23077 +First batch: fn: 0.3831, fp: 13.6054, label 0: tensor(510), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44688 dynamic_size: 10 +filter out voxels: 19539 +First batch: fn: 0.1946, fp: 14.0373, label 0: tensor(510), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46625 dynamic_size: 10 +filter out voxels: 21267 +First batch: fn: 0.1478, fp: 14.7010, label 0: tensor(510), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46141 dynamic_size: 10 +filter out voxels: 21299 +First batch: fn: 0.1236, fp: 14.5710, label 0: tensor(510), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44864 dynamic_size: 10 +filter out voxels: 20850 +First batch: fn: 0.1070, fp: 14.1809, label 0: tensor(510), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45185 dynamic_size: 10 +filter out voxels: 21557 +First batch: fn: 0.1143, fp: 14.2758, label 0: tensor(510), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44151 dynamic_size: 10 +filter out voxels: 21654 +First batch: fn: 0.1111, fp: 13.9497, label 0: tensor(510), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43490 dynamic_size: 10 +filter out voxels: 21869 +First batch: fn: 0.1086, fp: 13.7417, label 0: tensor(510), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42190 dynamic_size: 10 +filter out voxels: 21988 +First batch: fn: 0.0955, fp: 13.3408, label 0: tensor(509), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41498 dynamic_size: 10 +filter out voxels: 22534 +First batch: fn: 0.1045, fp: 13.1115, label 0: tensor(510), label 1: tensor(141) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:40.031] dice before refine 0.06306946277618408 and after 0.1191680058836937, label 0: tensor(510, device='cuda:0'), label 1: tensor(141, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:40.429] dice before refine 0.007791868876665831 and after 0.018578780815005302, label 0: tensor(0, device='cuda:0'), label 1: tensor(126, device='cuda:0') +num_clicks 10 points_length: 51874 dynamic_size: 10 +filter out voxels: 42793 +First batch: fn: 0.8436, fp: 15.6768, label 0: tensor(490), label 1: tensor(280) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58290 dynamic_size: 10 +filter out voxels: 47566 +First batch: fn: 0.4331, fp: 18.1306, label 0: tensor(509), label 1: tensor(230) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60962 dynamic_size: 10 +filter out voxels: 47397 +First batch: fn: 0.1873, fp: 19.2274, label 0: tensor(510), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 59375 dynamic_size: 10 +filter out voxels: 45094 +First batch: fn: 0.1717, fp: 18.7376, label 0: tensor(510), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 59915 dynamic_size: 10 +filter out voxels: 46086 +First batch: fn: 0.1360, fp: 18.9452, label 0: tensor(510), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56871 dynamic_size: 10 +filter out voxels: 44033 +First batch: fn: 0.1268, fp: 17.9850, label 0: tensor(510), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56095 dynamic_size: 10 +filter out voxels: 43996 +First batch: fn: 0.1121, fp: 17.7525, label 0: tensor(509), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56085 dynamic_size: 10 +filter out voxels: 45019 +First batch: fn: 0.1010, fp: 17.7605, label 0: tensor(510), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 55500 dynamic_size: 10 +filter out voxels: 46393 +First batch: fn: 0.1041, fp: 17.5710, label 0: tensor(510), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 54475 dynamic_size: 10 +filter out voxels: 48379 +First batch: fn: 0.1309, fp: 17.2178, label 0: tensor(381), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:47.598] dice before refine 0.002867857925593853 and after 0.08650657534599304, label 0: tensor(381, device='cuda:0'), label 1: tensor(69, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:47.968] dice before refine 0.053174883127212524 and after 0.07968337833881378, label 0: tensor(0, device='cuda:0'), label 1: tensor(80, device='cuda:0') +num_clicks 10 points_length: 38368 dynamic_size: 10 +filter out voxels: 30581 +First batch: fn: 0.4710, fp: 11.7481, label 0: tensor(510), label 1: tensor(206) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33321 dynamic_size: 10 +filter out voxels: 27846 +First batch: fn: 0.3150, fp: 10.2968, label 0: tensor(367), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31465 dynamic_size: 10 +filter out voxels: 26120 +First batch: fn: 0.2946, fp: 9.7261, label 0: tensor(451), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30596 dynamic_size: 10 +filter out voxels: 25585 +First batch: fn: 0.1624, fp: 9.5815, label 0: tensor(407), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30211 dynamic_size: 10 +filter out voxels: 25804 +First batch: fn: 0.1433, fp: 9.4780, label 0: tensor(314), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30234 dynamic_size: 10 +filter out voxels: 26732 +First batch: fn: 0.1322, fp: 9.4965, label 0: tensor(263), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31163 dynamic_size: 10 +filter out voxels: 27534 +First batch: fn: 0.0771, fp: 9.8475, label 0: tensor(236), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29887 dynamic_size: 10 +filter out voxels: 27448 +First batch: fn: 0.1236, fp: 9.3946, label 0: tensor(332), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31050 dynamic_size: 10 +filter out voxels: 27794 +First batch: fn: 0.0586, fp: 9.8299, label 0: tensor(406), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28991 dynamic_size: 10 +filter out voxels: 26185 +First batch: fn: 0.0475, fp: 9.1854, label 0: tensor(456), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:54.233] dice before refine 0.06565967202186584 and after 0.1750132143497467, label 0: tensor(456, device='cuda:0'), label 1: tensor(34, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +0.07645987346768379 +[22:33:55.491] epoch: 3/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.07645987346768379 stich left and right side (total size): 1 +num_clicks 10 points_length: 23364 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:33:56.033] dice before refine 0.06064842641353607 and after 0.28620871901512146, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 21448 dynamic_size: 10 +filter out voxels: 2310 +First batch: fn: 0.8160, fp: 0.1020, label 0: tensor(25), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13606 dynamic_size: 10 +filter out voxels: 2699 +First batch: fn: 0.4374, fp: 0.1450, label 0: tensor(132), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9869 dynamic_size: 10 +filter out voxels: 1961 +First batch: fn: 0.2663, fp: 0.1561, label 0: tensor(265), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7320 dynamic_size: 10 +filter out voxels: 1268 +First batch: fn: 0.1662, fp: 0.1471, label 0: tensor(441), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4464 dynamic_size: 10 +filter out voxels: 451 +First batch: fn: 0.0865, fp: 0.1045, label 0: tensor(423), label 1: tensor(181) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3673 dynamic_size: 10 +filter out voxels: 52 +First batch: fn: 0.0820, fp: 0.0752, label 0: tensor(282), label 1: tensor(447) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3611 dynamic_size: 10 +filter out voxels: 111 +First batch: fn: 0.0396, fp: 0.1149, label 0: tensor(529), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3064 dynamic_size: 10 +filter out voxels: 67 +First batch: fn: 0.0580, fp: 0.0731, label 0: tensor(375), label 1: tensor(175) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2658 dynamic_size: 10 +filter out voxels: 77 +First batch: fn: 0.0413, fp: 0.0725, label 0: tensor(270), label 1: tensor(228) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2736 dynamic_size: 10 +filter out voxels: 103 +First batch: fn: 0.0311, fp: 0.0860, label 0: tensor(353), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:03.604] dice before refine 0.7546601295471191 and after 0.949373722076416, label 0: tensor(353, device='cuda:0'), label 1: tensor(149, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 88105 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:04.166] dice before refine 0.5276724100112915 and after 0.5466203093528748, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 55578 dynamic_size: 10 +filter out voxels: 196 +First batch: fn: 0.6197, fp: 0.0111, label 0: tensor(226), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29456 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3212, fp: 0.0131, label 0: tensor(351), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24935 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2660, fp: 0.0170, label 0: tensor(516), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23536 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.2549, fp: 0.0122, label 0: tensor(386), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19348 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.2065, fp: 0.0131, label 0: tensor(380), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16411 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.1679, fp: 0.0183, label 0: tensor(442), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14325 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.1410, fp: 0.0215, label 0: tensor(426), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12899 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.1134, fp: 0.0330, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11601 dynamic_size: 10 +filter out voxels: 34 +First batch: fn: 0.0919, fp: 0.0398, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10380 dynamic_size: 10 +filter out voxels: 46 +First batch: fn: 0.0681, fp: 0.0497, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:14.404] dice before refine 0.8562904596328735 and after 0.9476257562637329, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 204709 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:15.086] dice before refine 0.29165345430374146 and after 0.25839507579803467, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 174843 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8512, fp: 0.0029, label 0: tensor(160), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 154114 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7512, fp: 0.0016, label 0: tensor(119), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 147566 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7203, fp: 0.0006, label 0: tensor(67), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 141640 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6911, fp: 0.0008, label 0: tensor(84), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 136764 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6674, fp: 0.0007, label 0: tensor(79), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 132560 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.6470, fp: 0.0006, label 0: tensor(63), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 126272 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.6161, fp: 0.0007, label 0: tensor(81), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 121573 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.5927, fp: 0.0012, label 0: tensor(136), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 116617 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5681, fp: 0.0016, label 0: tensor(199), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 113017 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5511, fp: 0.0009, label 0: tensor(118), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:24.136] dice before refine 0.5351606011390686 and after 0.645961344242096, label 0: tensor(118, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 347521 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:24.979] dice before refine 0.30341649055480957 and after 0.2730471193790436, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 295044 dynamic_size: 10 +filter out voxels: 417 +First batch: fn: 0.8406, fp: 0.0084, label 0: tensor(373), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 270755 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7783, fp: 0.0008, label 0: tensor(138), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 251623 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7221, fp: 0.0020, label 0: tensor(248), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 246297 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7074, fp: 0.0013, label 0: tensor(160), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 240699 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6913, fp: 0.0014, label 0: tensor(118), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 232046 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6666, fp: 0.0011, label 0: tensor(109), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 219764 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6318, fp: 0.0006, label 0: tensor(75), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 210489 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6052, fp: 0.0005, label 0: tensor(52), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 203258 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5846, fp: 0.0003, label 0: tensor(53), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 198883 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5717, fp: 0.0006, label 0: tensor(87), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:35.731] dice before refine 0.567703127861023 and after 0.6045031547546387, label 0: tensor(87, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25099 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:36.210] dice before refine 0.1818697303533554 and after 0.347842812538147, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 20361 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7837, fp: 0.0276, label 0: tensor(206), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14153 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.5040, fp: 0.0598, label 0: tensor(308), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10211 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.3077, fp: 0.0991, label 0: tensor(450), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8223 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.2147, fp: 0.1129, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5653 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.0996, fp: 0.1256, label 0: tensor(499), label 1: tensor(339) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4898 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0717, fp: 0.1234, label 0: tensor(447), label 1: tensor(338) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4663 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.0489, fp: 0.1369, label 0: tensor(509), label 1: tensor(251) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4045 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.0421, fp: 0.1191, label 0: tensor(508), label 1: tensor(165) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4001 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.0439, fp: 0.1155, label 0: tensor(506), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3879 dynamic_size: 10 +filter out voxels: 31 +First batch: fn: 0.0412, fp: 0.1133, label 0: tensor(499), label 1: tensor(158) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:44.881] dice before refine 0.7808141112327576 and after 0.9307876825332642, label 0: tensor(499, device='cuda:0'), label 1: tensor(158, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 82461 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:45.459] dice before refine 0.4796810448169708 and after 0.4833226799964905, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 56602 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6790, fp: 0.0075, label 0: tensor(214), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3673, fp: 0.0223, label 0: tensor(463), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25986 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2949, fp: 0.0203, label 0: tensor(386), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19272 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2137, fp: 0.0200, label 0: tensor(366), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16521 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1704, fp: 0.0299, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14006 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1448, fp: 0.0251, label 0: tensor(530), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11025 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1071, fp: 0.0266, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9456 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0796, fp: 0.0351, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8506 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.0557, fp: 0.0474, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7221 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.0392, fp: 0.0484, label 0: tensor(506), label 1: tensor(421) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:55.910] dice before refine 0.8678694367408752 and after 0.9593498706817627, label 0: tensor(506, device='cuda:0'), label 1: tensor(421, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 308412 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:34:56.696] dice before refine 0.5164575576782227 and after 0.4660623371601105, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 217822 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6918, fp: 0.0145, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 204190 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6597, fp: 0.0023, label 0: tensor(134), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 189840 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6154, fp: 0.0002, label 0: tensor(17), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 178975 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5789, fp: 0.0014, label 0: tensor(186), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 178233 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5774, fp: 0.0005, label 0: tensor(104), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 172305 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5582, fp: 0.0004, label 0: tensor(78), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 165990 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5368, fp: 0.0014, label 0: tensor(188), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 167756 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5432, fp: 0.0008, label 0: tensor(101), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 159484 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5164, fp: 0.0008, label 0: tensor(97), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 155120 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5022, fp: 0.0007, label 0: tensor(99), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:06.738] dice before refine 0.6203778982162476 and after 0.679337203502655, label 0: tensor(99, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 355661 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:07.565] dice before refine 0.43143802881240845 and after 0.39428919553756714, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 269700 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7532, fp: 0.0051, label 0: tensor(442), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 267595 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7474, fp: 0.0050, label 0: tensor(430), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 265370 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7434, fp: 0.0027, label 0: tensor(301), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 260212 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7297, fp: 0.0019, label 0: tensor(207), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 252264 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7072, fp: 0.0021, label 0: tensor(240), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 247008 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6930, fp: 0.0015, label 0: tensor(184), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 238689 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6695, fp: 0.0017, label 0: tensor(233), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 232734 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6533, fp: 0.0011, label 0: tensor(123), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 220663 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6188, fp: 0.0016, label 0: tensor(220), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 217254 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6092, fp: 0.0016, label 0: tensor(239), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:19.014] dice before refine 0.5126146078109741 and after 0.5690013766288757, label 0: tensor(239, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.5905080410567197 +[22:35:19.714] epoch: 3/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.5905080410567197 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:20.228] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 5887 dynamic_size: 10 +filter out voxels: 5854 +First batch: fn: 1.0000, fp: 177.3939, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6913 dynamic_size: 10 +filter out voxels: 6880 +First batch: fn: 1.0000, fp: 208.4848, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8771 dynamic_size: 10 +filter out voxels: 8738 +First batch: fn: 1.0000, fp: 264.7879, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12117 dynamic_size: 10 +filter out voxels: 12084 +First batch: fn: 1.0000, fp: 366.1818, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13387 dynamic_size: 10 +filter out voxels: 13354 +First batch: fn: 1.0000, fp: 404.6667, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13711 dynamic_size: 10 +filter out voxels: 13678 +First batch: fn: 1.0000, fp: 414.4849, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13803 dynamic_size: 10 +filter out voxels: 13770 +First batch: fn: 1.0000, fp: 417.2727, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13487 dynamic_size: 10 +filter out voxels: 13454 +First batch: fn: 1.0000, fp: 407.6970, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13629 dynamic_size: 10 +filter out voxels: 13596 +First batch: fn: 1.0000, fp: 412.0000, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13532 dynamic_size: 10 +filter out voxels: 13499 +First batch: fn: 1.0000, fp: 409.0606, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:23.083] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:23.457] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 13810 dynamic_size: 10 +filter out voxels: 13777 +First batch: fn: 1.0000, fp: 417.4849, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23386 dynamic_size: 10 +filter out voxels: 23353 +First batch: fn: 1.0000, fp: 707.6667, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25421 dynamic_size: 10 +filter out voxels: 25388 +First batch: fn: 1.0000, fp: 769.3333, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25143 dynamic_size: 10 +filter out voxels: 25110 +First batch: fn: 1.0000, fp: 760.9091, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24791 dynamic_size: 10 +filter out voxels: 24758 +First batch: fn: 1.0000, fp: 750.2424, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24869 dynamic_size: 10 +filter out voxels: 24836 +First batch: fn: 1.0000, fp: 752.6061, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24672 dynamic_size: 10 +filter out voxels: 24639 +First batch: fn: 1.0000, fp: 746.6364, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24576 dynamic_size: 10 +filter out voxels: 24543 +First batch: fn: 1.0000, fp: 743.7273, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24656 dynamic_size: 10 +filter out voxels: 24623 +First batch: fn: 1.0000, fp: 746.1515, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24765 dynamic_size: 10 +filter out voxels: 24732 +First batch: fn: 1.0000, fp: 749.4545, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:26.329] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.0 +[22:35:26.698] epoch: 3/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:27.151] dice before refine 0.0 and after 0.15507134795188904, label 0: tensor(0, device='cuda:0'), label 1: tensor(132, device='cuda:0') +num_clicks 10 points_length: 7639 dynamic_size: 10 +filter out voxels: 6891 +First batch: fn: 0.5007, fp: 4.9402, label 0: tensor(38), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19805 dynamic_size: 10 +filter out voxels: 19290 +First batch: fn: 0.2322, fp: 13.8739, label 0: tensor(50), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25003 dynamic_size: 10 +filter out voxels: 24594 +First batch: fn: 0.1432, fp: 17.6652, label 0: tensor(76), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24594 dynamic_size: 10 +filter out voxels: 24189 +First batch: fn: 0.1674, fp: 17.3497, label 0: tensor(61), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25558 dynamic_size: 10 +filter out voxels: 25177 +First batch: fn: 0.1104, fp: 18.0933, label 0: tensor(67), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24547 dynamic_size: 10 +filter out voxels: 24166 +First batch: fn: 0.1303, fp: 17.3533, label 0: tensor(69), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24490 dynamic_size: 10 +filter out voxels: 24131 +First batch: fn: 0.1239, fp: 17.3191, label 0: tensor(45), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24555 dynamic_size: 10 +filter out voxels: 24192 +First batch: fn: 0.1090, fp: 17.3803, label 0: tensor(52), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25631 dynamic_size: 10 +filter out voxels: 25286 +First batch: fn: 0.0719, fp: 18.1838, label 0: tensor(80), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23476 dynamic_size: 10 +filter out voxels: 23133 +First batch: fn: 0.1132, fp: 16.6075, label 0: tensor(83), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:30.925] dice before refine 0.0 and after 0.09495414793491364, label 0: tensor(83, device='cuda:0'), label 1: tensor(43, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4392 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:31.345] dice before refine 0.012006120756268501 and after 0.3941138982772827, label 0: tensor(0, device='cuda:0'), label 1: tensor(505, device='cuda:0') +num_clicks 10 points_length: 10417 dynamic_size: 10 +filter out voxels: 8678 +First batch: fn: 0.2286, fp: 2.1432, label 0: tensor(134), label 1: tensor(206) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18942 dynamic_size: 10 +filter out voxels: 16302 +First batch: fn: 0.0428, fp: 4.2700, label 0: tensor(528), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18509 dynamic_size: 10 +filter out voxels: 16492 +First batch: fn: 0.0558, fp: 4.1585, label 0: tensor(342), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17765 dynamic_size: 10 +filter out voxels: 16219 +First batch: fn: 0.0437, fp: 4.0011, label 0: tensor(352), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18598 dynamic_size: 10 +filter out voxels: 17254 +First batch: fn: 0.0421, fp: 4.1924, label 0: tensor(262), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17942 dynamic_size: 10 +filter out voxels: 16803 +First batch: fn: 0.0385, fp: 4.0467, label 0: tensor(276), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17859 dynamic_size: 10 +filter out voxels: 16832 +First batch: fn: 0.0433, fp: 4.0230, label 0: tensor(228), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18324 dynamic_size: 10 +filter out voxels: 17351 +First batch: fn: 0.0446, fp: 4.1275, label 0: tensor(224), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18248 dynamic_size: 10 +filter out voxels: 17301 +First batch: fn: 0.0444, fp: 4.1104, label 0: tensor(264), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18002 dynamic_size: 10 +filter out voxels: 17103 +First batch: fn: 0.0478, fp: 4.0510, label 0: tensor(184), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:37.313] dice before refine 0.11014401167631149 and after 0.3102310299873352, label 0: tensor(184, device='cuda:0'), label 1: tensor(85, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(184) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:37.686] dice before refine 0.0010143702384084463 and after 0.7421820759773254, label 0: tensor(0, device='cuda:0'), label 1: tensor(184, device='cuda:0') +num_clicks 10 points_length: 742 dynamic_size: 10 +filter out voxels: 241 +First batch: fn: 0.2393, fp: 0.2892, label 0: tensor(46), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 756 dynamic_size: 10 +filter out voxels: 260 +First batch: fn: 0.1524, fp: 0.3860, label 0: tensor(66), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 638 dynamic_size: 10 +filter out voxels: 215 +First batch: fn: 0.1225, fp: 0.3319, label 0: tensor(84), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 547 dynamic_size: 10 +filter out voxels: 168 +First batch: fn: 0.1375, fp: 0.2521, label 0: tensor(61), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 534 dynamic_size: 10 +filter out voxels: 183 +First batch: fn: 0.1168, fp: 0.2635, label 0: tensor(71), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 498 dynamic_size: 10 +filter out voxels: 151 +First batch: fn: 0.1054, fp: 0.2493, label 0: tensor(57), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 563 dynamic_size: 10 +filter out voxels: 228 +First batch: fn: 0.0662, fp: 0.3348, label 0: tensor(53), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 493 dynamic_size: 10 +filter out voxels: 182 +First batch: fn: 0.0726, fp: 0.2785, label 0: tensor(48), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 501 dynamic_size: 10 +filter out voxels: 188 +First batch: fn: 0.0670, fp: 0.2899, label 0: tensor(87), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 409 dynamic_size: 10 +filter out voxels: 102 +First batch: fn: 0.0883, fp: 0.2030, label 0: tensor(37), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:41.441] dice before refine 0.03514480963349342 and after 0.8435592651367188, label 0: tensor(37, device='cuda:0'), label 1: tensor(26, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4409 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:41.853] dice before refine 0.03402352333068848 and after 0.5477310419082642, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 5960 dynamic_size: 10 +filter out voxels: 4297 +First batch: fn: 0.1814, fp: 1.1703, label 0: tensor(209), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4995 dynamic_size: 10 +filter out voxels: 3041 +First batch: fn: 0.0408, fp: 1.0921, label 0: tensor(280), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4839 dynamic_size: 10 +filter out voxels: 2596 +First batch: fn: 0.0299, fp: 1.0676, label 0: tensor(449), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3598 dynamic_size: 10 +filter out voxels: 1823 +First batch: fn: 0.0293, fp: 0.7868, label 0: tensor(275), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3047 dynamic_size: 10 +filter out voxels: 1513 +First batch: fn: 0.0365, fp: 0.6546, label 0: tensor(262), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2463 dynamic_size: 10 +filter out voxels: 1036 +First batch: fn: 0.0374, fp: 0.5212, label 0: tensor(319), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1809 dynamic_size: 10 +filter out voxels: 537 +First batch: fn: 0.0395, fp: 0.3708, label 0: tensor(280), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1507 dynamic_size: 10 +filter out voxels: 230 +First batch: fn: 0.0386, fp: 0.3032, label 0: tensor(227), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1325 dynamic_size: 10 +filter out voxels: 91 +First batch: fn: 0.0367, fp: 0.2638, label 0: tensor(246), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1207 dynamic_size: 10 +filter out voxels: 41 +First batch: fn: 0.0451, fp: 0.2286, label 0: tensor(214), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:47.600] dice before refine 0.5789695978164673 and after 0.874961256980896, label 0: tensor(214, device='cuda:0'), label 1: tensor(70, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(312) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:47.982] dice before refine 0.11451397836208344 and after 0.6995773911476135, label 0: tensor(0, device='cuda:0'), label 1: tensor(312, device='cuda:0') +num_clicks 10 points_length: 1564 dynamic_size: 10 +filter out voxels: 102 +First batch: fn: 0.2953, fp: 0.3100, label 0: tensor(128), label 1: tensor(157) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1792 dynamic_size: 10 +filter out voxels: 95 +First batch: fn: 0.0464, fp: 0.6471, label 0: tensor(266), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1626 dynamic_size: 10 +filter out voxels: 82 +First batch: fn: 0.0360, fp: 0.5933, label 0: tensor(243), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1331 dynamic_size: 10 +filter out voxels: 72 +First batch: fn: 0.0313, fp: 0.4837, label 0: tensor(206), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1298 dynamic_size: 10 +filter out voxels: 72 +First batch: fn: 0.0259, fp: 0.4764, label 0: tensor(222), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1115 dynamic_size: 10 +filter out voxels: 65 +First batch: fn: 0.0337, fp: 0.3978, label 0: tensor(115), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1092 dynamic_size: 10 +filter out voxels: 65 +First batch: fn: 0.0337, fp: 0.3889, label 0: tensor(216), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 944 dynamic_size: 10 +filter out voxels: 53 +First batch: fn: 0.0433, fp: 0.3220, label 0: tensor(155), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 827 dynamic_size: 10 +filter out voxels: 53 +First batch: fn: 0.0515, fp: 0.2686, label 0: tensor(125), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 749 dynamic_size: 10 +filter out voxels: 46 +First batch: fn: 0.0619, fp: 0.2279, label 0: tensor(94), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:52.640] dice before refine 0.674291729927063 and after 0.8716672658920288, label 0: tensor(94, device='cuda:0'), label 1: tensor(58, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8531 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:35:53.062] dice before refine 0.7278613448143005 and after 0.7951739430427551, label 0: tensor(0, device='cuda:0'), label 1: tensor(532, device='cuda:0') +num_clicks 10 points_length: 3633 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.1734, fp: 0.2525, label 0: tensor(452), label 1: tensor(293) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6416 dynamic_size: 10 +filter out voxels: 261 +First batch: fn: 0.0028, fp: 0.7493, label 0: tensor(510), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6517 dynamic_size: 10 +filter out voxels: 206 +First batch: fn: 0.0021, fp: 0.7618, label 0: tensor(510), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6514 dynamic_size: 10 +filter out voxels: 185 +First batch: fn: 0.0030, fp: 0.7605, label 0: tensor(510), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6285 dynamic_size: 10 +filter out voxels: 170 +First batch: fn: 0.0053, fp: 0.7315, label 0: tensor(510), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5835 dynamic_size: 10 +filter out voxels: 162 +First batch: fn: 0.0052, fp: 0.6788, label 0: tensor(510), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5515 dynamic_size: 10 +filter out voxels: 156 +First batch: fn: 0.0070, fp: 0.6394, label 0: tensor(509), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5187 dynamic_size: 10 +filter out voxels: 150 +First batch: fn: 0.0069, fp: 0.6011, label 0: tensor(510), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4946 dynamic_size: 10 +filter out voxels: 143 +First batch: fn: 0.0076, fp: 0.5721, label 0: tensor(510), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4536 dynamic_size: 10 +filter out voxels: 129 +First batch: fn: 0.0100, fp: 0.5217, label 0: tensor(521), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:00.191] dice before refine 0.6618964076042175 and after 0.792155385017395, label 0: tensor(521, device='cuda:0'), label 1: tensor(61, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(316) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:00.575] dice before refine 0.05287254601716995 and after 0.43263712525367737, label 0: tensor(0, device='cuda:0'), label 1: tensor(316, device='cuda:0') +num_clicks 10 points_length: 4944 dynamic_size: 10 +filter out voxels: 3595 +First batch: fn: 0.2705, fp: 1.6428, label 0: tensor(162), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3860 dynamic_size: 10 +filter out voxels: 2704 +First batch: fn: 0.0940, fp: 1.3998, label 0: tensor(168), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3137 dynamic_size: 10 +filter out voxels: 2190 +First batch: fn: 0.0832, fp: 1.1308, label 0: tensor(154), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2771 dynamic_size: 10 +filter out voxels: 1984 +First batch: fn: 0.0627, fp: 1.0097, label 0: tensor(164), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2368 dynamic_size: 10 +filter out voxels: 1707 +First batch: fn: 0.0507, fp: 0.8657, label 0: tensor(103), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2003 dynamic_size: 10 +filter out voxels: 1357 +First batch: fn: 0.0534, fp: 0.7217, label 0: tensor(102), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1397 dynamic_size: 10 +filter out voxels: 790 +First batch: fn: 0.0464, fp: 0.4942, label 0: tensor(88), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1214 dynamic_size: 10 +filter out voxels: 574 +First batch: fn: 0.0364, fp: 0.4334, label 0: tensor(117), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 806 dynamic_size: 10 +filter out voxels: 200 +First batch: fn: 0.0449, fp: 0.2670, label 0: tensor(54), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1061 dynamic_size: 10 +filter out voxels: 445 +First batch: fn: 0.0368, fp: 0.3738, label 0: tensor(68), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:04.883] dice before refine 0.5507907867431641 and after 0.8413372039794922, label 0: tensor(68, device='cuda:0'), label 1: tensor(40, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:05.307] dice before refine 0.4052061140537262 and after 0.6327241659164429, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 7798 dynamic_size: 10 +filter out voxels: 3735 +First batch: fn: 0.2142, fp: 0.6981, label 0: tensor(413), label 1: tensor(353) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7495 dynamic_size: 10 +filter out voxels: 2089 +First batch: fn: 0.0067, fp: 0.8701, label 0: tensor(509), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6378 dynamic_size: 10 +filter out voxels: 852 +First batch: fn: 0.0050, fp: 0.7411, label 0: tensor(509), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5356 dynamic_size: 10 +filter out voxels: 85 +First batch: fn: 0.0049, fp: 0.6217, label 0: tensor(510), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5037 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0074, fp: 0.5819, label 0: tensor(510), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4787 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0063, fp: 0.5537, label 0: tensor(510), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4521 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0063, fp: 0.5226, label 0: tensor(509), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4317 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0094, fp: 0.4957, label 0: tensor(510), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4233 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.0087, fp: 0.4865, label 0: tensor(534), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4043 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.0108, fp: 0.4622, label 0: tensor(510), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:12.433] dice before refine 0.6937722563743591 and after 0.8121968507766724, label 0: tensor(510, device='cuda:0'), label 1: tensor(63, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +0.4319716448133642 +[22:36:13.160] epoch: 3/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.4319716448133642 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:13.663] dice before refine 0.0 and after 0.017307378351688385, label 0: tensor(0, device='cuda:0'), label 1: tensor(118, device='cuda:0') +num_clicks 10 points_length: 54167 dynamic_size: 10 +filter out voxels: 51709 +First batch: fn: 0.6150, fp: 43.1033, label 0: tensor(188), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50136 dynamic_size: 10 +filter out voxels: 48603 +First batch: fn: 0.4027, fp: 40.0621, label 0: tensor(204), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48214 dynamic_size: 10 +filter out voxels: 47723 +First batch: fn: 0.1808, fp: 38.7328, label 0: tensor(76), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47667 dynamic_size: 10 +filter out voxels: 47265 +First batch: fn: 0.1598, fp: 38.3123, label 0: tensor(54), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 52951 dynamic_size: 10 +filter out voxels: 52436 +First batch: fn: 0.0847, fp: 42.6521, label 0: tensor(86), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47510 dynamic_size: 10 +filter out voxels: 47121 +First batch: fn: 0.1057, fp: 38.2397, label 0: tensor(76), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48978 dynamic_size: 10 +filter out voxels: 48592 +First batch: fn: 0.0864, fp: 39.4439, label 0: tensor(38), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49259 dynamic_size: 10 +filter out voxels: 48889 +First batch: fn: 0.0743, fp: 39.6828, label 0: tensor(72), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47632 dynamic_size: 10 +filter out voxels: 47288 +First batch: fn: 0.1025, fp: 38.3414, label 0: tensor(28), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49362 dynamic_size: 10 +filter out voxels: 49017 +First batch: fn: 0.0896, fp: 39.7506, label 0: tensor(55), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:17.705] dice before refine 0.0 and after 0.046133484691381454, label 0: tensor(55, device='cuda:0'), label 1: tensor(8, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 5457 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:18.121] dice before refine 0.02652907557785511 and after 0.19433479011058807, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 27959 dynamic_size: 10 +filter out voxels: 13667 +First batch: fn: 0.3821, fp: 4.7414, label 0: tensor(510), label 1: tensor(404) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33648 dynamic_size: 10 +filter out voxels: 12120 +First batch: fn: 0.0863, fp: 6.0797, label 0: tensor(509), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31667 dynamic_size: 10 +filter out voxels: 7908 +First batch: fn: 0.0453, fp: 5.7577, label 0: tensor(510), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30289 dynamic_size: 10 +filter out voxels: 6219 +First batch: fn: 0.0290, fp: 5.5215, label 0: tensor(510), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28923 dynamic_size: 10 +filter out voxels: 5280 +First batch: fn: 0.0238, fp: 5.2763, label 0: tensor(510), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28068 dynamic_size: 10 +filter out voxels: 4501 +First batch: fn: 0.0202, fp: 5.1233, label 0: tensor(510), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27808 dynamic_size: 10 +filter out voxels: 4374 +First batch: fn: 0.0200, fp: 5.0759, label 0: tensor(510), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26999 dynamic_size: 10 +filter out voxels: 4452 +First batch: fn: 0.0185, fp: 4.9291, label 0: tensor(510), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26383 dynamic_size: 10 +filter out voxels: 4657 +First batch: fn: 0.0198, fp: 4.8149, label 0: tensor(510), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25938 dynamic_size: 10 +filter out voxels: 4932 +First batch: fn: 0.0187, fp: 4.7345, label 0: tensor(510), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:25.868] dice before refine 0.14439664781093597 and after 0.2907826602458954, label 0: tensor(510, device='cuda:0'), label 1: tensor(23, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:26.330] dice before refine 0.0 and after 0.07886864244937897, label 0: tensor(0, device='cuda:0'), label 1: tensor(136, device='cuda:0') +num_clicks 10 points_length: 13548 dynamic_size: 10 +filter out voxels: 11420 +First batch: fn: 0.5319, fp: 10.4027, label 0: tensor(281), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14129 dynamic_size: 10 +filter out voxels: 10223 +First batch: fn: 0.3527, fp: 11.0508, label 0: tensor(476), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15407 dynamic_size: 10 +filter out voxels: 13002 +First batch: fn: 0.2962, fp: 12.1388, label 0: tensor(263), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17358 dynamic_size: 10 +filter out voxels: 16042 +First batch: fn: 0.2155, fp: 13.7942, label 0: tensor(211), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17944 dynamic_size: 10 +filter out voxels: 17248 +First batch: fn: 0.2324, fp: 14.2502, label 0: tensor(125), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21329 dynamic_size: 10 +filter out voxels: 20584 +First batch: fn: 0.1308, fp: 17.0839, label 0: tensor(152), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20874 dynamic_size: 10 +filter out voxels: 20252 +First batch: fn: 0.1299, fp: 16.7175, label 0: tensor(102), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20983 dynamic_size: 10 +filter out voxels: 20447 +First batch: fn: 0.1243, fp: 16.8111, label 0: tensor(86), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22029 dynamic_size: 10 +filter out voxels: 21433 +First batch: fn: 0.0896, fp: 17.6901, label 0: tensor(142), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21706 dynamic_size: 10 +filter out voxels: 21203 +First batch: fn: 0.1275, fp: 17.3914, label 0: tensor(88), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:31.034] dice before refine 0.0 and after 0.08464384824037552, label 0: tensor(88, device='cuda:0'), label 1: tensor(28, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 31898 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:31.513] dice before refine 0.469851553440094 and after 0.545438289642334, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 35624 dynamic_size: 10 +filter out voxels: 8362 +First batch: fn: 0.3300, fp: 0.7869, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29480 dynamic_size: 10 +filter out voxels: 3640 +First batch: fn: 0.1917, fp: 0.7325, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27299 dynamic_size: 10 +filter out voxels: 507 +First batch: fn: 0.0918, fp: 0.7640, label 0: tensor(510), label 1: tensor(436) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24113 dynamic_size: 10 +filter out voxels: 34 +First batch: fn: 0.0197, fp: 0.7362, label 0: tensor(508), label 1: tensor(218) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23927 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.0069, fp: 0.7432, label 0: tensor(510), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22789 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0040, fp: 0.7104, label 0: tensor(510), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22029 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0019, fp: 0.6887, label 0: tensor(510), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19486 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.0047, fp: 0.6062, label 0: tensor(510), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18803 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.0029, fp: 0.5866, label 0: tensor(510), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17846 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0023, fp: 0.5572, label 0: tensor(510), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:40.702] dice before refine 0.6842795014381409 and after 0.8032083511352539, label 0: tensor(510, device='cuda:0'), label 1: tensor(48, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +0.3818644041364843 +[22:36:41.675] epoch: 3/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.3818644041364843 stich left and right side (total size): 1 +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:42.101] dice before refine 0.0 and after 0.009668323211371899, label 0: tensor(0, device='cuda:0'), label 1: tensor(47, device='cuda:0') +num_clicks 10 points_length: 7375 dynamic_size: 10 +filter out voxels: 5776 +First batch: fn: 0.9271, fp: 14.0020, label 0: tensor(161), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9090 dynamic_size: 10 +filter out voxels: 5634 +First batch: fn: 0.3158, fp: 18.0850, label 0: tensor(380), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17250 dynamic_size: 10 +filter out voxels: 9314 +First batch: fn: 0.2611, fp: 34.6579, label 0: tensor(510), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19774 dynamic_size: 10 +filter out voxels: 11076 +First batch: fn: 0.2267, fp: 39.8016, label 0: tensor(510), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20798 dynamic_size: 10 +filter out voxels: 12015 +First batch: fn: 0.1842, fp: 41.9170, label 0: tensor(510), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21064 dynamic_size: 10 +filter out voxels: 12193 +First batch: fn: 0.1660, fp: 42.4737, label 0: tensor(510), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21118 dynamic_size: 10 +filter out voxels: 12302 +First batch: fn: 0.1437, fp: 42.6053, label 0: tensor(510), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20892 dynamic_size: 10 +filter out voxels: 12265 +First batch: fn: 0.1336, fp: 42.1579, label 0: tensor(510), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20699 dynamic_size: 10 +filter out voxels: 12237 +First batch: fn: 0.1316, fp: 41.7692, label 0: tensor(510), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20674 dynamic_size: 10 +filter out voxels: 12347 +First batch: fn: 0.1316, fp: 41.7186, label 0: tensor(510), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:48.112] dice before refine 0.0 and after 0.04008389636874199, label 0: tensor(510, device='cuda:0'), label 1: tensor(6, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:48.475] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(39, device='cuda:0') +num_clicks 10 points_length: 7121 dynamic_size: 10 +filter out voxels: 6439 +First batch: fn: 1.0000, fp: 13.4150, label 0: tensor(37), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8609 dynamic_size: 10 +filter out voxels: 7990 +First batch: fn: 0.8462, fp: 16.5810, label 0: tensor(44), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14464 dynamic_size: 10 +filter out voxels: 13819 +First batch: fn: 0.1964, fp: 29.0830, label 0: tensor(89), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11618 dynamic_size: 10 +filter out voxels: 10938 +First batch: fn: 0.1923, fp: 23.3259, label 0: tensor(114), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11748 dynamic_size: 10 +filter out voxels: 11000 +First batch: fn: 0.1255, fp: 23.6559, label 0: tensor(92), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11377 dynamic_size: 10 +filter out voxels: 10657 +First batch: fn: 0.1154, fp: 22.9150, label 0: tensor(150), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10449 dynamic_size: 10 +filter out voxels: 9798 +First batch: fn: 0.1174, fp: 21.0344, label 0: tensor(108), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10732 dynamic_size: 10 +filter out voxels: 10128 +First batch: fn: 0.1255, fp: 21.5992, label 0: tensor(106), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10852 dynamic_size: 10 +filter out voxels: 10263 +First batch: fn: 0.1296, fp: 21.8381, label 0: tensor(98), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10746 dynamic_size: 10 +filter out voxels: 10180 +First batch: fn: 0.1316, fp: 21.6215, label 0: tensor(118), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:52.226] dice before refine 0.0 and after 0.0729752779006958, label 0: tensor(118, device='cuda:0'), label 1: tensor(14, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:52.608] dice before refine 0.0 and after 0.045530952513217926, label 0: tensor(0, device='cuda:0'), label 1: tensor(149, device='cuda:0') +num_clicks 10 points_length: 26120 dynamic_size: 10 +filter out voxels: 586 +First batch: fn: 0.3228, fp: 28.0685, label 0: tensor(510), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33442 dynamic_size: 10 +filter out voxels: 50 +First batch: fn: 0.1239, fp: 36.2261, label 0: tensor(510), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33102 dynamic_size: 10 +filter out voxels: 125 +First batch: fn: 0.1098, fp: 35.8707, label 0: tensor(510), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35612 dynamic_size: 10 +filter out voxels: 271 +First batch: fn: 0.0804, fp: 38.6283, label 0: tensor(510), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35495 dynamic_size: 10 +filter out voxels: 484 +First batch: fn: 0.0326, fp: 38.5489, label 0: tensor(510), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36026 dynamic_size: 10 +filter out voxels: 604 +First batch: fn: 0.0315, fp: 39.1272, label 0: tensor(510), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36261 dynamic_size: 10 +filter out voxels: 703 +First batch: fn: 0.0272, fp: 39.3870, label 0: tensor(510), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37772 dynamic_size: 10 +filter out voxels: 778 +First batch: fn: 0.0261, fp: 41.0304, label 0: tensor(510), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37318 dynamic_size: 10 +filter out voxels: 1083 +First batch: fn: 0.0250, fp: 40.5380, label 0: tensor(510), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37934 dynamic_size: 10 +filter out voxels: 2136 +First batch: fn: 0.0228, fp: 41.2098, label 0: tensor(510), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:59.562] dice before refine 4.1281375160906464e-05 and after 0.04712151363492012, label 0: tensor(510, device='cuda:0'), label 1: tensor(7, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:36:59.936] dice before refine 0.0012894906103610992 and after 0.1329449713230133, label 0: tensor(0, device='cuda:0'), label 1: tensor(139, device='cuda:0') +num_clicks 10 points_length: 8335 dynamic_size: 10 +filter out voxels: 6898 +First batch: fn: 0.3054, fp: 8.7543, label 0: tensor(146), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6586 dynamic_size: 10 +filter out voxels: 5153 +First batch: fn: 0.0837, fp: 7.0750, label 0: tensor(240), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5813 dynamic_size: 10 +filter out voxels: 4937 +First batch: fn: 0.0967, fp: 6.2217, label 0: tensor(191), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5755 dynamic_size: 10 +filter out voxels: 5086 +First batch: fn: 0.0717, fp: 6.1837, label 0: tensor(161), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6110 dynamic_size: 10 +filter out voxels: 5422 +First batch: fn: 0.0620, fp: 6.5793, label 0: tensor(150), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6925 dynamic_size: 10 +filter out voxels: 6154 +First batch: fn: 0.0739, fp: 7.4533, label 0: tensor(122), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6588 dynamic_size: 10 +filter out voxels: 5965 +First batch: fn: 0.0728, fp: 7.0880, label 0: tensor(138), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6524 dynamic_size: 10 +filter out voxels: 5960 +First batch: fn: 0.0761, fp: 7.0152, label 0: tensor(132), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6529 dynamic_size: 10 +filter out voxels: 5991 +First batch: fn: 0.0696, fp: 7.0272, label 0: tensor(100), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6751 dynamic_size: 10 +filter out voxels: 6173 +First batch: fn: 0.0641, fp: 7.2739, label 0: tensor(167), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:04.382] dice before refine 0.0 and after 0.2162705957889557, label 0: tensor(167, device='cuda:0'), label 1: tensor(27, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 838 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:04.765] dice before refine 0.0 and after 0.36143916845321655, label 0: tensor(0, device='cuda:0'), label 1: tensor(167, device='cuda:0') +num_clicks 10 points_length: 2325 dynamic_size: 10 +filter out voxels: 145 +First batch: fn: 0.2148, fp: 2.5597, label 0: tensor(227), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5559 dynamic_size: 10 +filter out voxels: 212 +First batch: fn: 0.1504, fp: 6.4833, label 0: tensor(510), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4664 dynamic_size: 10 +filter out voxels: 90 +First batch: fn: 0.1026, fp: 5.4630, label 0: tensor(510), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4810 dynamic_size: 10 +filter out voxels: 89 +First batch: fn: 0.1372, fp: 5.6026, label 0: tensor(507), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4390 dynamic_size: 10 +filter out voxels: 67 +First batch: fn: 0.1504, fp: 5.0883, label 0: tensor(506), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4287 dynamic_size: 10 +filter out voxels: 72 +First batch: fn: 0.1456, fp: 4.9702, label 0: tensor(488), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4103 dynamic_size: 10 +filter out voxels: 66 +First batch: fn: 0.1563, fp: 4.7399, label 0: tensor(480), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4056 dynamic_size: 10 +filter out voxels: 69 +First batch: fn: 0.1575, fp: 4.6826, label 0: tensor(437), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3928 dynamic_size: 10 +filter out voxels: 65 +First batch: fn: 0.1599, fp: 4.5274, label 0: tensor(396), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3955 dynamic_size: 10 +filter out voxels: 74 +First batch: fn: 0.1504, fp: 4.5692, label 0: tensor(380), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:10.956] dice before refine 0.007362274918705225 and after 0.27139317989349365, label 0: tensor(380, device='cuda:0'), label 1: tensor(25, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 901 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(164) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:11.342] dice before refine 0.0 and after 0.20826952159404755, label 0: tensor(0, device='cuda:0'), label 1: tensor(164, device='cuda:0') +num_clicks 10 points_length: 5170 dynamic_size: 10 +filter out voxels: 4098 +First batch: fn: 0.2453, fp: 5.4928, label 0: tensor(157), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 162 +First batch: fn: 0.1088, fp: 1.2664, label 0: tensor(199), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1177 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.1143, fp: 1.1920, label 0: tensor(142), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1086 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1132, fp: 1.0921, label 0: tensor(223), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 930 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1543, fp: 0.8779, label 0: tensor(155), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 825 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1720, fp: 0.7436, label 0: tensor(99), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 809 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1188, fp: 0.7791, label 0: tensor(140), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 684 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1176, fp: 0.6415, label 0: tensor(123), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 618 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1188, fp: 0.5671, label 0: tensor(188), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 526 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1299, fp: 0.4539, label 0: tensor(98), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:15.991] dice before refine 0.0 and after 0.7484720349311829, label 0: tensor(98, device='cuda:0'), label 1: tensor(39, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1964 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:16.377] dice before refine 0.0030933632515370846 and after 0.09329446405172348, label 0: tensor(0, device='cuda:0'), label 1: tensor(151, device='cuda:0') +num_clicks 10 points_length: 24880 dynamic_size: 10 +filter out voxels: 11307 +First batch: fn: 0.3483, fp: 12.3198, label 0: tensor(510), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27442 dynamic_size: 10 +filter out voxels: 11841 +First batch: fn: 0.1044, fp: 13.8681, label 0: tensor(510), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27290 dynamic_size: 10 +filter out voxels: 12113 +First batch: fn: 0.0102, fp: 13.8849, label 0: tensor(510), label 1: tensor(4) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26717 dynamic_size: 10 +filter out voxels: 12174 +First batch: fn: 0.0071, fp: 13.5962, label 0: tensor(510), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24579 dynamic_size: 10 +filter out voxels: 11568 +First batch: fn: 0.0087, fp: 12.5061, label 0: tensor(510), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24241 dynamic_size: 10 +filter out voxels: 11722 +First batch: fn: 0.0081, fp: 12.3345, label 0: tensor(510), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23330 dynamic_size: 10 +filter out voxels: 11814 +First batch: fn: 0.0117, fp: 11.8671, label 0: tensor(510), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22562 dynamic_size: 10 +filter out voxels: 12130 +First batch: fn: 0.0122, fp: 11.4756, label 0: tensor(510), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22098 dynamic_size: 10 +filter out voxels: 12442 +First batch: fn: 0.0112, fp: 11.2403, label 0: tensor(510), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21143 dynamic_size: 10 +filter out voxels: 12790 +First batch: fn: 0.0127, fp: 10.7525, label 0: tensor(510), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:23.000] dice before refine 0.0021450319327414036 and after 0.15668052434921265, label 0: tensor(510, device='cuda:0'), label 1: tensor(13, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2027 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:23.382] dice before refine 0.0 and after 0.11327097564935684, label 0: tensor(0, device='cuda:0'), label 1: tensor(116, device='cuda:0') +num_clicks 10 points_length: 12134 dynamic_size: 10 +filter out voxels: 6871 +First batch: fn: 0.6177, fp: 5.3685, label 0: tensor(550), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9459 dynamic_size: 10 +filter out voxels: 3678 +First batch: fn: 0.1293, fp: 4.5372, label 0: tensor(509), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9789 dynamic_size: 10 +filter out voxels: 2672 +First batch: fn: 0.0370, fp: 4.7923, label 0: tensor(510), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8780 dynamic_size: 10 +filter out voxels: 1375 +First batch: fn: 0.0340, fp: 4.2975, label 0: tensor(510), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9249 dynamic_size: 10 +filter out voxels: 1246 +First batch: fn: 0.0429, fp: 4.5200, label 0: tensor(510), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10812 dynamic_size: 10 +filter out voxels: 1870 +First batch: fn: 0.0385, fp: 5.2955, label 0: tensor(510), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13661 dynamic_size: 10 +filter out voxels: 3813 +First batch: fn: 0.0567, fp: 6.6828, label 0: tensor(510), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15129 dynamic_size: 10 +filter out voxels: 5367 +First batch: fn: 0.0459, fp: 7.4179, label 0: tensor(509), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15169 dynamic_size: 10 +filter out voxels: 5912 +First batch: fn: 0.0474, fp: 7.4361, label 0: tensor(510), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15113 dynamic_size: 10 +filter out voxels: 6290 +First batch: fn: 0.0518, fp: 7.4040, label 0: tensor(510), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:30.077] dice before refine 0.009234828874468803 and after 0.20686741173267365, label 0: tensor(510, device='cuda:0'), label 1: tensor(41, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.12484844062816013 +[22:37:30.748] epoch: 3/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.12484844062816013 stich left and right side (total size): 1 +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:31.234] dice before refine 0.00021965349151287228 and after 0.2957631051540375, label 0: tensor(0, device='cuda:0'), label 1: tensor(539, device='cuda:0') +num_clicks 10 points_length: 23187 dynamic_size: 10 +filter out voxels: 13065 +First batch: fn: 0.3328, fp: 2.8443, label 0: tensor(509), label 1: tensor(459) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28319 dynamic_size: 10 +filter out voxels: 16310 +First batch: fn: 0.1135, fp: 3.7669, label 0: tensor(510), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25202 dynamic_size: 10 +filter out voxels: 14812 +First batch: fn: 0.0755, fp: 3.3778, label 0: tensor(510), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24537 dynamic_size: 10 +filter out voxels: 14608 +First batch: fn: 0.0689, fp: 3.2932, label 0: tensor(508), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23929 dynamic_size: 10 +filter out voxels: 14687 +First batch: fn: 0.0614, fp: 3.2175, label 0: tensor(510), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20904 dynamic_size: 10 +filter out voxels: 13415 +First batch: fn: 0.0660, fp: 2.7983, label 0: tensor(509), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21479 dynamic_size: 10 +filter out voxels: 14126 +First batch: fn: 0.0588, fp: 2.8844, label 0: tensor(509), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22467 dynamic_size: 10 +filter out voxels: 14886 +First batch: fn: 0.0628, fp: 3.0158, label 0: tensor(510), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20762 dynamic_size: 10 +filter out voxels: 13943 +First batch: fn: 0.0641, fp: 2.7808, label 0: tensor(509), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22109 dynamic_size: 10 +filter out voxels: 14931 +First batch: fn: 0.0674, fp: 2.9620, label 0: tensor(510), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:39.199] dice before refine 0.099249467253685 and after 0.3992084562778473, label 0: tensor(510, device='cuda:0'), label 1: tensor(87, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:39.631] dice before refine 0.0031411016825586557 and after 0.30521830916404724, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 21689 dynamic_size: 10 +filter out voxels: 10246 +First batch: fn: 0.3472, fp: 2.6247, label 0: tensor(508), label 1: tensor(371) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25034 dynamic_size: 10 +filter out voxels: 13638 +First batch: fn: 0.1487, fp: 3.2816, label 0: tensor(510), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23642 dynamic_size: 10 +filter out voxels: 12818 +First batch: fn: 0.0993, fp: 3.1402, label 0: tensor(510), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22997 dynamic_size: 10 +filter out voxels: 12683 +First batch: fn: 0.0813, fp: 3.0699, label 0: tensor(510), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22380 dynamic_size: 10 +filter out voxels: 12872 +First batch: fn: 0.0667, fp: 2.9999, label 0: tensor(510), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21049 dynamic_size: 10 +filter out voxels: 12741 +First batch: fn: 0.0647, fp: 2.8195, label 0: tensor(510), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20435 dynamic_size: 10 +filter out voxels: 12872 +First batch: fn: 0.0630, fp: 2.7371, label 0: tensor(510), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20194 dynamic_size: 10 +filter out voxels: 13052 +First batch: fn: 0.0662, fp: 2.7009, label 0: tensor(510), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20577 dynamic_size: 10 +filter out voxels: 13445 +First batch: fn: 0.0621, fp: 2.7575, label 0: tensor(510), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20028 dynamic_size: 10 +filter out voxels: 13294 +First batch: fn: 0.0643, fp: 2.6800, label 0: tensor(510), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:47.630] dice before refine 0.12099141627550125 and after 0.404572457075119, label 0: tensor(510, device='cuda:0'), label 1: tensor(84, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:48.057] dice before refine 0.0006071310490369797 and after 0.33018946647644043, label 0: tensor(0, device='cuda:0'), label 1: tensor(505, device='cuda:0') +num_clicks 10 points_length: 15766 dynamic_size: 10 +filter out voxels: 7644 +First batch: fn: 0.4519, fp: 1.7718, label 0: tensor(508), label 1: tensor(478) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18851 dynamic_size: 10 +filter out voxels: 7191 +First batch: fn: 0.1913, fp: 2.4676, label 0: tensor(509), label 1: tensor(176) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18996 dynamic_size: 10 +filter out voxels: 7318 +First batch: fn: 0.1504, fp: 2.5289, label 0: tensor(510), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19123 dynamic_size: 10 +filter out voxels: 8095 +First batch: fn: 0.1379, fp: 2.5592, label 0: tensor(509), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18823 dynamic_size: 10 +filter out voxels: 8406 +First batch: fn: 0.1271, fp: 2.5278, label 0: tensor(510), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18758 dynamic_size: 10 +filter out voxels: 8983 +First batch: fn: 0.1078, fp: 2.5379, label 0: tensor(510), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18206 dynamic_size: 10 +filter out voxels: 9133 +First batch: fn: 0.1023, fp: 2.4656, label 0: tensor(510), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18305 dynamic_size: 10 +filter out voxels: 9488 +First batch: fn: 0.0970, fp: 2.4848, label 0: tensor(509), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18645 dynamic_size: 10 +filter out voxels: 9915 +First batch: fn: 0.0856, fp: 2.5441, label 0: tensor(509), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17860 dynamic_size: 10 +filter out voxels: 9735 +First batch: fn: 0.0843, fp: 2.4347, label 0: tensor(510), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:56.186] dice before refine 0.034861642867326736 and after 0.4235052466392517, label 0: tensor(510, device='cuda:0'), label 1: tensor(112, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(390) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:37:56.610] dice before refine 0.0017184590687975287 and after 0.24407850205898285, label 0: tensor(0, device='cuda:0'), label 1: tensor(390, device='cuda:0') +num_clicks 10 points_length: 16755 dynamic_size: 10 +filter out voxels: 5954 +First batch: fn: 0.6185, fp: 1.7447, label 0: tensor(545), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15351 dynamic_size: 10 +filter out voxels: 8388 +First batch: fn: 0.2739, fp: 1.8913, label 0: tensor(478), label 1: tensor(263) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15510 dynamic_size: 10 +filter out voxels: 9708 +First batch: fn: 0.1653, fp: 2.0223, label 0: tensor(510), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16177 dynamic_size: 10 +filter out voxels: 11807 +First batch: fn: 0.1209, fp: 2.1608, label 0: tensor(550), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15076 dynamic_size: 10 +filter out voxels: 11921 +First batch: fn: 0.1008, fp: 2.0255, label 0: tensor(474), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15710 dynamic_size: 10 +filter out voxels: 13018 +First batch: fn: 0.0884, fp: 2.1274, label 0: tensor(309), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15738 dynamic_size: 10 +filter out voxels: 13202 +First batch: fn: 0.0824, fp: 2.1374, label 0: tensor(419), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15953 dynamic_size: 10 +filter out voxels: 13550 +First batch: fn: 0.0812, fp: 2.1688, label 0: tensor(368), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16016 dynamic_size: 10 +filter out voxels: 13686 +First batch: fn: 0.0774, fp: 2.1815, label 0: tensor(287), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16110 dynamic_size: 10 +filter out voxels: 13810 +First batch: fn: 0.0757, fp: 2.1965, label 0: tensor(352), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:04.507] dice before refine 0.12240096926689148 and after 0.4508543312549591, label 0: tensor(352, device='cuda:0'), label 1: tensor(102, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 36954 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:05.044] dice before refine 0.6085328459739685 and after 0.6174039840698242, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 30139 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3419, fp: 0.4736, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32066 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.2201, fp: 0.6476, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32208 dynamic_size: 10 +filter out voxels: 69 +First batch: fn: 0.1553, fp: 0.7162, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30434 dynamic_size: 10 +filter out voxels: 46 +First batch: fn: 0.0957, fp: 0.7279, label 0: tensor(510), label 1: tensor(473) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29513 dynamic_size: 10 +filter out voxels: 40 +First batch: fn: 0.0607, fp: 0.7379, label 0: tensor(509), label 1: tensor(456) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28782 dynamic_size: 10 +filter out voxels: 37 +First batch: fn: 0.0339, fp: 0.7450, label 0: tensor(510), label 1: tensor(296) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25194 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.0335, fp: 0.6483, label 0: tensor(510), label 1: tensor(331) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24999 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.0250, fp: 0.6515, label 0: tensor(508), label 1: tensor(244) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23714 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.0234, fp: 0.6183, label 0: tensor(510), label 1: tensor(192) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23872 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.0208, fp: 0.6252, label 0: tensor(510), label 1: tensor(240) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:16.077] dice before refine 0.6309638619422913 and after 0.7618075013160706, label 0: tensor(510, device='cuda:0'), label 1: tensor(240, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 35104 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:16.617] dice before refine 0.5142660140991211 and after 0.5647352337837219, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 30341 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4393, fp: 0.4250, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30748 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3317, fp: 0.5442, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32255 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.2693, fp: 0.6495, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31833 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.2160, fp: 0.6909, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31504 dynamic_size: 10 +filter out voxels: 31 +First batch: fn: 0.1622, fp: 0.7352, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29457 dynamic_size: 10 +filter out voxels: 31 +First batch: fn: 0.0932, fp: 0.7459, label 0: tensor(510), label 1: tensor(492) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28528 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.0450, fp: 0.7677, label 0: tensor(510), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24956 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0417, fp: 0.6692, label 0: tensor(510), label 1: tensor(241) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24688 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0327, fp: 0.6706, label 0: tensor(510), label 1: tensor(240) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23546 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0253, fp: 0.6455, label 0: tensor(510), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:27.409] dice before refine 0.5863524079322815 and after 0.7465102672576904, label 0: tensor(510, device='cuda:0'), label 1: tensor(180, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26886 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:27.934] dice before refine 0.2742357552051544 and after 0.33648601174354553, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 42443 dynamic_size: 10 +filter out voxels: 311 +First batch: fn: 0.5997, fp: 0.9789, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44325 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.4437, fp: 1.2050, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41251 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2888, fp: 1.2454, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38654 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1776, fp: 1.2601, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36666 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0992, fp: 1.2646, label 0: tensor(510), label 1: tensor(328) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35102 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0637, fp: 1.2419, label 0: tensor(510), label 1: tensor(263) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33818 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0445, fp: 1.2133, label 0: tensor(510), label 1: tensor(232) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33262 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0340, fp: 1.2032, label 0: tensor(510), label 1: tensor(205) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32003 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0314, fp: 1.1589, label 0: tensor(510), label 1: tensor(175) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31178 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0301, fp: 1.1295, label 0: tensor(510), label 1: tensor(221) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:38.850] dice before refine 0.49474629759788513 and after 0.6253957748413086, label 0: tensor(510, device='cuda:0'), label 1: tensor(221, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:39.388] dice before refine 0.19367653131484985 and after 0.32162392139434814, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 39067 dynamic_size: 10 +filter out voxels: 444 +First batch: fn: 0.6472, fp: 0.8409, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41817 dynamic_size: 10 +filter out voxels: 320 +First batch: fn: 0.5350, fp: 1.0579, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42223 dynamic_size: 10 +filter out voxels: 172 +First batch: fn: 0.4318, fp: 1.1766, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37035 dynamic_size: 10 +filter out voxels: 63 +First batch: fn: 0.2728, fp: 1.1379, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34423 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1555, fp: 1.1557, label 0: tensor(510), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33176 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0637, fp: 1.2000, label 0: tensor(510), label 1: tensor(302) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29282 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0523, fp: 1.0632, label 0: tensor(509), label 1: tensor(286) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28571 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0361, fp: 1.0522, label 0: tensor(510), label 1: tensor(199) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27983 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0282, fp: 1.0377, label 0: tensor(509), label 1: tensor(185) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27053 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0232, fp: 1.0074, label 0: tensor(510), label 1: tensor(175) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:50.465] dice before refine 0.4881821572780609 and after 0.6586000323295593, label 0: tensor(510, device='cuda:0'), label 1: tensor(175, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.4854405874555761 +[22:38:51.060] epoch: 3/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.4854405874555761 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(157) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:51.571] dice before refine 0.29820552468299866 and after 0.4072113037109375, label 0: tensor(0, device='cuda:0'), label 1: tensor(157, device='cuda:0') +num_clicks 10 points_length: 8845 dynamic_size: 10 +filter out voxels: 5355 +First batch: fn: 0.0312, fp: 2.7892, label 0: tensor(478), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10943 dynamic_size: 10 +filter out voxels: 7745 +First batch: fn: 0.0246, fp: 3.4649, label 0: tensor(361), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12326 dynamic_size: 10 +filter out voxels: 9427 +First batch: fn: 0.0348, fp: 3.8957, label 0: tensor(320), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12628 dynamic_size: 10 +filter out voxels: 10024 +First batch: fn: 0.0399, fp: 3.9869, label 0: tensor(301), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12718 dynamic_size: 10 +filter out voxels: 10213 +First batch: fn: 0.0319, fp: 4.0236, label 0: tensor(403), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11979 dynamic_size: 10 +filter out voxels: 9817 +First batch: fn: 0.0233, fp: 3.7966, label 0: tensor(264), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12211 dynamic_size: 10 +filter out voxels: 9932 +First batch: fn: 0.0198, fp: 3.8740, label 0: tensor(271), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11646 dynamic_size: 10 +filter out voxels: 9605 +First batch: fn: 0.0252, fp: 3.6885, label 0: tensor(426), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11494 dynamic_size: 10 +filter out voxels: 9537 +First batch: fn: 0.0255, fp: 3.6397, label 0: tensor(303), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11328 dynamic_size: 10 +filter out voxels: 9430 +First batch: fn: 0.0242, fp: 3.5880, label 0: tensor(310), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:57.294] dice before refine 0.2232292890548706 and after 0.3488451838493347, label 0: tensor(310, device='cuda:0'), label 1: tensor(32, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:38:57.679] dice before refine 0.44119641184806824 and after 0.5747800469398499, label 0: tensor(0, device='cuda:0'), label 1: tensor(153, device='cuda:0') +num_clicks 10 points_length: 4350 dynamic_size: 10 +filter out voxels: 1936 +First batch: fn: 0.0625, fp: 1.3246, label 0: tensor(348), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5952 dynamic_size: 10 +filter out voxels: 3493 +First batch: fn: 0.0137, fp: 1.8842, label 0: tensor(494), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6528 dynamic_size: 10 +filter out voxels: 4507 +First batch: fn: 0.0134, fp: 2.0682, label 0: tensor(222), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7709 dynamic_size: 10 +filter out voxels: 5536 +First batch: fn: 0.0096, fp: 2.4487, label 0: tensor(270), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7551 dynamic_size: 10 +filter out voxels: 5576 +First batch: fn: 0.0118, fp: 2.3960, label 0: tensor(329), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7426 dynamic_size: 10 +filter out voxels: 5581 +First batch: fn: 0.0207, fp: 2.3473, label 0: tensor(227), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7447 dynamic_size: 10 +filter out voxels: 5609 +First batch: fn: 0.0239, fp: 2.3508, label 0: tensor(161), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8016 dynamic_size: 10 +filter out voxels: 6157 +First batch: fn: 0.0268, fp: 2.5293, label 0: tensor(230), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8180 dynamic_size: 10 +filter out voxels: 6350 +First batch: fn: 0.0303, fp: 2.5781, label 0: tensor(260), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8542 dynamic_size: 10 +filter out voxels: 6683 +First batch: fn: 0.0230, fp: 2.7009, label 0: tensor(237), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:03.109] dice before refine 0.30782267451286316 and after 0.4179980754852295, label 0: tensor(237, device='cuda:0'), label 1: tensor(37, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:03.491] dice before refine 0.23904633522033691 and after 0.29859352111816406, label 0: tensor(0, device='cuda:0'), label 1: tensor(109, device='cuda:0') +num_clicks 10 points_length: 14113 dynamic_size: 10 +filter out voxels: 10968 +First batch: fn: 0.0421, fp: 4.4582, label 0: tensor(407), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16613 dynamic_size: 10 +filter out voxels: 13911 +First batch: fn: 0.0220, fp: 5.2755, label 0: tensor(373), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16748 dynamic_size: 10 +filter out voxels: 14784 +First batch: fn: 0.0220, fp: 5.3186, label 0: tensor(301), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17046 dynamic_size: 10 +filter out voxels: 15325 +First batch: fn: 0.0172, fp: 5.4184, label 0: tensor(270), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17179 dynamic_size: 10 +filter out voxels: 15649 +First batch: fn: 0.0163, fp: 5.4617, label 0: tensor(267), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16770 dynamic_size: 10 +filter out voxels: 15463 +First batch: fn: 0.0277, fp: 5.3198, label 0: tensor(211), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16728 dynamic_size: 10 +filter out voxels: 15458 +First batch: fn: 0.0306, fp: 5.3036, label 0: tensor(173), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17363 dynamic_size: 10 +filter out voxels: 16075 +First batch: fn: 0.0233, fp: 5.5134, label 0: tensor(181), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17642 dynamic_size: 10 +filter out voxels: 16398 +First batch: fn: 0.0242, fp: 5.6014, label 0: tensor(151), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17368 dynamic_size: 10 +filter out voxels: 16206 +First batch: fn: 0.0265, fp: 5.5118, label 0: tensor(155), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:08.629] dice before refine 0.1971784383058548 and after 0.25416338443756104, label 0: tensor(155, device='cuda:0'), label 1: tensor(33, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:09.012] dice before refine 0.35686251521110535 and after 0.46320033073425293, label 0: tensor(0, device='cuda:0'), label 1: tensor(136, device='cuda:0') +num_clicks 10 points_length: 6659 dynamic_size: 10 +filter out voxels: 4190 +First batch: fn: 0.0839, fp: 2.0395, label 0: tensor(380), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9431 dynamic_size: 10 +filter out voxels: 6503 +First batch: fn: 0.0080, fp: 2.9994, label 0: tensor(463), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8767 dynamic_size: 10 +filter out voxels: 6405 +First batch: fn: 0.0041, fp: 2.7915, label 0: tensor(258), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8841 dynamic_size: 10 +filter out voxels: 7027 +First batch: fn: 0.0089, fp: 2.8103, label 0: tensor(274), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10182 dynamic_size: 10 +filter out voxels: 8600 +First batch: fn: 0.0169, fp: 3.2299, label 0: tensor(277), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12669 dynamic_size: 10 +filter out voxels: 11265 +First batch: fn: 0.0185, fp: 4.0214, label 0: tensor(173), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13974 dynamic_size: 10 +filter out voxels: 12655 +First batch: fn: 0.0255, fp: 4.4305, label 0: tensor(283), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14570 dynamic_size: 10 +filter out voxels: 13329 +First batch: fn: 0.0287, fp: 4.6173, label 0: tensor(186), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15251 dynamic_size: 10 +filter out voxels: 14033 +First batch: fn: 0.0268, fp: 4.8364, label 0: tensor(203), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15086 dynamic_size: 10 +filter out voxels: 13935 +First batch: fn: 0.0332, fp: 4.7774, label 0: tensor(181), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:14.263] dice before refine 0.22485756874084473 and after 0.27781063318252563, label 0: tensor(181, device='cuda:0'), label 1: tensor(54, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.3022784373976968 +[22:39:14.783] epoch: 3/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.3022784373976968 stich left and right side (total size): 1 +num_clicks 10 points_length: 19676 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:15.327] dice before refine 0.0 and after 0.051679693162441254, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 45985 dynamic_size: 10 +filter out voxels: 25973 +First batch: fn: 0.9363, fp: 1.4008, label 0: tensor(253), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53766 dynamic_size: 10 +filter out voxels: 36990 +First batch: fn: 0.7344, fp: 1.9982, label 0: tensor(336), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49793 dynamic_size: 10 +filter out voxels: 37691 +First batch: fn: 0.5443, fp: 1.9864, label 0: tensor(295), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48149 dynamic_size: 10 +filter out voxels: 39304 +First batch: fn: 0.3572, fp: 2.0899, label 0: tensor(516), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46354 dynamic_size: 10 +filter out voxels: 39243 +First batch: fn: 0.2769, fp: 2.0789, label 0: tensor(368), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46926 dynamic_size: 10 +filter out voxels: 41250 +First batch: fn: 0.1864, fp: 2.1986, label 0: tensor(510), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44641 dynamic_size: 10 +filter out voxels: 39843 +First batch: fn: 0.1412, fp: 2.1276, label 0: tensor(495), label 1: tensor(430) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43526 dynamic_size: 10 +filter out voxels: 39339 +First batch: fn: 0.1143, fp: 2.0978, label 0: tensor(521), label 1: tensor(409) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42363 dynamic_size: 10 +filter out voxels: 38660 +First batch: fn: 0.0939, fp: 2.0591, label 0: tensor(511), label 1: tensor(263) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41091 dynamic_size: 10 +filter out voxels: 37604 +First batch: fn: 0.0974, fp: 1.9910, label 0: tensor(405), label 1: tensor(345) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:24.822] dice before refine 0.17740842700004578 and after 0.465680867433548, label 0: tensor(405, device='cuda:0'), label 1: tensor(345, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 30548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:25.326] dice before refine 0.00301856710575521 and after 0.01001514308154583, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 57530 dynamic_size: 10 +filter out voxels: 26420 +First batch: fn: 0.9905, fp: 0.8928, label 0: tensor(121), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 73959 dynamic_size: 10 +filter out voxels: 43003 +First batch: fn: 0.9602, fp: 1.4608, label 0: tensor(168), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 77434 dynamic_size: 10 +filter out voxels: 49227 +First batch: fn: 0.8670, fp: 1.6678, label 0: tensor(205), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 71367 dynamic_size: 10 +filter out voxels: 48774 +First batch: fn: 0.6803, fp: 1.6560, label 0: tensor(289), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 63748 dynamic_size: 10 +filter out voxels: 46699 +First batch: fn: 0.4951, fp: 1.5917, label 0: tensor(404), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58136 dynamic_size: 10 +filter out voxels: 44315 +First batch: fn: 0.3869, fp: 1.5162, label 0: tensor(451), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 54363 dynamic_size: 10 +filter out voxels: 42764 +First batch: fn: 0.3104, fp: 1.4692, label 0: tensor(511), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50331 dynamic_size: 10 +filter out voxels: 41065 +First batch: fn: 0.2339, fp: 1.4137, label 0: tensor(543), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44364 dynamic_size: 10 +filter out voxels: 37720 +First batch: fn: 0.1502, fp: 1.3021, label 0: tensor(526), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42065 dynamic_size: 10 +filter out voxels: 36042 +First batch: fn: 0.1167, fp: 1.2603, label 0: tensor(544), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:34.729] dice before refine 0.2976057827472687 and after 0.5744630098342896, label 0: tensor(544, device='cuda:0'), label 1: tensor(501, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 23425 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:35.192] dice before refine 0.42739197611808777 and after 0.5047689080238342, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 30375 dynamic_size: 10 +filter out voxels: 3922 +First batch: fn: 0.3392, fp: 0.9575, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21699 dynamic_size: 10 +filter out voxels: 3189 +First batch: fn: 0.1148, fp: 0.8115, label 0: tensor(507), label 1: tensor(443) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14147 dynamic_size: 10 +filter out voxels: 1444 +First batch: fn: 0.0286, fp: 0.5754, label 0: tensor(510), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10987 dynamic_size: 10 +filter out voxels: 71 +First batch: fn: 0.0166, fp: 0.4524, label 0: tensor(510), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10191 dynamic_size: 10 +filter out voxels: 68 +First batch: fn: 0.0132, fp: 0.4218, label 0: tensor(510), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8509 dynamic_size: 10 +filter out voxels: 86 +First batch: fn: 0.0132, fp: 0.3501, label 0: tensor(509), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8146 dynamic_size: 10 +filter out voxels: 100 +First batch: fn: 0.0121, fp: 0.3357, label 0: tensor(510), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7078 dynamic_size: 10 +filter out voxels: 101 +First batch: fn: 0.0108, fp: 0.2913, label 0: tensor(510), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6786 dynamic_size: 10 +filter out voxels: 93 +First batch: fn: 0.0089, fp: 0.2808, label 0: tensor(510), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6204 dynamic_size: 10 +filter out voxels: 88 +First batch: fn: 0.0102, fp: 0.2546, label 0: tensor(509), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:43.639] dice before refine 0.7603546977043152 and after 0.888037383556366, label 0: tensor(509, device='cuda:0'), label 1: tensor(83, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25823 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:44.120] dice before refine 0.5498350262641907 and after 0.6204542517662048, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 24015 dynamic_size: 10 +filter out voxels: 2391 +First batch: fn: 0.2399, fp: 0.6901, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18309 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0718, fp: 0.6373, label 0: tensor(509), label 1: tensor(354) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15985 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0168, fp: 0.6022, label 0: tensor(509), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13646 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0148, fp: 0.5136, label 0: tensor(510), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11704 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0084, fp: 0.4448, label 0: tensor(510), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10724 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0070, fp: 0.4082, label 0: tensor(509), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10053 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0074, fp: 0.3819, label 0: tensor(510), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8949 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0095, fp: 0.3370, label 0: tensor(510), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9132 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0066, fp: 0.3471, label 0: tensor(509), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8465 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0083, fp: 0.3195, label 0: tensor(510), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:52.589] dice before refine 0.7553741931915283 and after 0.8602385520935059, label 0: tensor(510, device='cuda:0'), label 1: tensor(76, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 69252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:39:53.167] dice before refine 0.6370977759361267 and after 0.6455574631690979, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 44966 dynamic_size: 10 +filter out voxels: 129 +First batch: fn: 0.4087, fp: 0.2406, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40196 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3467, fp: 0.2337, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36518 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3018, fp: 0.2255, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32629 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2501, fp: 0.2211, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29473 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2004, fp: 0.2252, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27186 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.1631, fp: 0.2295, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24408 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.1197, fp: 0.2327, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23419 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.0975, fp: 0.2407, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22427 dynamic_size: 10 +filter out voxels: 32 +First batch: fn: 0.0847, fp: 0.2392, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21919 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.0717, fp: 0.2448, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:40:04.640] dice before refine 0.7788124680519104 and after 0.8585094213485718, label 0: tensor(507, device='cuda:0'), label 1: tensor(503, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 92139 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:40:05.254] dice before refine 0.7221536040306091 and after 0.707622766494751, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 45812 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3983, fp: 0.0989, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38836 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3246, fp: 0.0969, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35707 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2937, fp: 0.0938, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31837 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2705, fp: 0.0750, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29615 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2482, fp: 0.0732, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27141 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2125, fp: 0.0821, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24448 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1783, fp: 0.0871, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23378 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1593, fp: 0.0944, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21637 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1328, fp: 0.1020, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20513 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1186, fp: 0.1040, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:40:16.723] dice before refine 0.8178098201751709 and after 0.8921011090278625, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 10350 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:40:17.172] dice before refine 0.0660233199596405 and after 0.18686363101005554, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 43045 dynamic_size: 10 +filter out voxels: 19472 +First batch: fn: 0.5221, fp: 3.6368, label 0: tensor(509), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45045 dynamic_size: 10 +filter out voxels: 16297 +First batch: fn: 0.2356, fp: 4.1166, label 0: tensor(510), label 1: tensor(294) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44544 dynamic_size: 10 +filter out voxels: 12700 +First batch: fn: 0.1300, fp: 4.1737, label 0: tensor(509), label 1: tensor(224) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45324 dynamic_size: 10 +filter out voxels: 12631 +First batch: fn: 0.0805, fp: 4.2986, label 0: tensor(509), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44511 dynamic_size: 10 +filter out voxels: 11418 +First batch: fn: 0.0554, fp: 4.2452, label 0: tensor(510), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43869 dynamic_size: 10 +filter out voxels: 11008 +First batch: fn: 0.0444, fp: 4.1941, label 0: tensor(510), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43004 dynamic_size: 10 +filter out voxels: 10509 +First batch: fn: 0.0422, fp: 4.1128, label 0: tensor(509), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42494 dynamic_size: 10 +filter out voxels: 10331 +First batch: fn: 0.0371, fp: 4.0686, label 0: tensor(509), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41242 dynamic_size: 10 +filter out voxels: 9655 +First batch: fn: 0.0364, fp: 3.9483, label 0: tensor(510), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40861 dynamic_size: 10 +filter out voxels: 9014 +First batch: fn: 0.0368, fp: 3.9111, label 0: tensor(510), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:40:25.972] dice before refine 0.17120730876922607 and after 0.32533812522888184, label 0: tensor(510, device='cuda:0'), label 1: tensor(80, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 9566 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:40:26.405] dice before refine 0.04764118790626526 and after 0.23840652406215668, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 19806 dynamic_size: 10 +filter out voxels: 11624 +First batch: fn: 0.6759, fp: 1.3945, label 0: tensor(339), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26921 dynamic_size: 10 +filter out voxels: 21989 +First batch: fn: 0.2652, fp: 2.5490, label 0: tensor(397), label 1: tensor(368) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31134 dynamic_size: 10 +filter out voxels: 25180 +First batch: fn: 0.0822, fp: 3.1725, label 0: tensor(509), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27101 dynamic_size: 10 +filter out voxels: 21659 +First batch: fn: 0.0674, fp: 2.7656, label 0: tensor(510), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24170 dynamic_size: 10 +filter out voxels: 19281 +First batch: fn: 0.0609, fp: 2.4657, label 0: tensor(549), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22910 dynamic_size: 10 +filter out voxels: 18125 +First batch: fn: 0.0524, fp: 2.3426, label 0: tensor(510), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20917 dynamic_size: 10 +filter out voxels: 16437 +First batch: fn: 0.0496, fp: 2.1370, label 0: tensor(510), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19835 dynamic_size: 10 +filter out voxels: 15424 +First batch: fn: 0.0452, fp: 2.0283, label 0: tensor(510), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20813 dynamic_size: 10 +filter out voxels: 16641 +First batch: fn: 0.0463, fp: 2.1294, label 0: tensor(510), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20417 dynamic_size: 10 +filter out voxels: 16296 +First batch: fn: 0.0424, fp: 2.0919, label 0: tensor(510), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:40:34.240] dice before refine 0.2615794539451599 and after 0.47250130772590637, label 0: tensor(510, device='cuda:0'), label 1: tensor(87, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.6150377880443226 +[22:40:34.748] epoch: 3/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.6150377880443226 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:40:35.277] dice before refine 0.0 and after 0.0049549550749361515, label 0: tensor(0, device='cuda:0'), label 1: tensor(33, device='cuda:0') +num_clicks 10 points_length: 26508 dynamic_size: 10 +filter out voxels: 26333 +First batch: fn: 0.4844, fp: 206.6094, label 0: tensor(20), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30412 dynamic_size: 10 +filter out voxels: 30299 +First batch: fn: 0.7422, fp: 236.8516, label 0: tensor(14), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32803 dynamic_size: 10 +filter out voxels: 32639 +First batch: fn: 0.4844, fp: 255.7891, label 0: tensor(22), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32482 dynamic_size: 10 +filter out voxels: 32348 +First batch: fn: 0.5625, fp: 253.2031, label 0: tensor(13), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32003 dynamic_size: 10 +filter out voxels: 31870 +First batch: fn: 0.5391, fp: 249.4844, label 0: tensor(22), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31276 dynamic_size: 10 +filter out voxels: 31154 +First batch: fn: 0.5938, fp: 243.7500, label 0: tensor(14), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32940 dynamic_size: 10 +filter out voxels: 32724 +First batch: fn: 0.3203, fp: 257.0234, label 0: tensor(26), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31574 dynamic_size: 10 +filter out voxels: 31423 +First batch: fn: 0.4062, fp: 246.2656, label 0: tensor(21), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31146 dynamic_size: 10 +filter out voxels: 31005 +First batch: fn: 0.4531, fp: 242.8750, label 0: tensor(19), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33001 dynamic_size: 10 +filter out voxels: 32696 +First batch: fn: 0.1641, fp: 257.6562, label 0: tensor(57), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:40:38.317] dice before refine 0.0 and after 0.006134393159300089, label 0: tensor(57, device='cuda:0'), label 1: tensor(11, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:40:38.675] dice before refine 0.0 and after 0.00658209016546607, label 0: tensor(0, device='cuda:0'), label 1: tensor(26, device='cuda:0') +num_clicks 10 points_length: 18715 dynamic_size: 10 +filter out voxels: 18507 +First batch: fn: 0.5156, fp: 145.6953, label 0: tensor(25), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25812 dynamic_size: 10 +filter out voxels: 25698 +First batch: fn: 0.6875, fp: 200.9688, label 0: tensor(16), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29965 dynamic_size: 10 +filter out voxels: 29534 +First batch: fn: 0.2266, fp: 233.8750, label 0: tensor(70), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26569 dynamic_size: 10 +filter out voxels: 26329 +First batch: fn: 0.2891, fp: 207.2812, label 0: tensor(30), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27376 dynamic_size: 10 +filter out voxels: 27185 +First batch: fn: 0.3828, fp: 213.4922, label 0: tensor(40), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26031 dynamic_size: 10 +filter out voxels: 25906 +First batch: fn: 0.5234, fp: 202.8438, label 0: tensor(21), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28051 dynamic_size: 10 +filter out voxels: 27894 +First batch: fn: 0.3359, fp: 218.8125, label 0: tensor(38), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27754 dynamic_size: 10 +filter out voxels: 27617 +First batch: fn: 0.3594, fp: 216.4688, label 0: tensor(30), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27709 dynamic_size: 10 +filter out voxels: 27570 +First batch: fn: 0.3125, fp: 216.1641, label 0: tensor(29), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27364 dynamic_size: 10 +filter out voxels: 27206 +First batch: fn: 0.2656, fp: 213.5156, label 0: tensor(27), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:40:41.803] dice before refine 0.0 and after 0.006317073944956064, label 0: tensor(27, device='cuda:0'), label 1: tensor(7, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.005890298486602577 +[22:40:42.311] epoch: 3/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.005890298486602577 stich left and right side (total size): 1 +[22:40:42.312] - Val metrics mean dice: 0.2788556064074967 +Checkpoint Directory exists! +[22:40:43.083] - Val metrics best mean dice: 0.2788556064074967 at epoch 3 +num_clicks 50 points_length: 374 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31577250361442566 and after 0.29974034428596497 +num_clicks 50 points_length: 25014 dynamic_size: 6 +filter out voxels: 19099 +filter out voxels: 0 +First batch: fn: 0.0134, fp: 66.8690, label 0: tensor(506), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3529232442378998 and after 0.3458266854286194 +num_clicks 50 points_length: 28880 dynamic_size: 38 +filter out voxels: 24070 +filter out voxels: 0 +First batch: fn: 0.0321, fp: 77.1872, label 0: tensor(538), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3576628565788269 and after 0.35900506377220154 +num_clicks 50 points_length: 31782 dynamic_size: 8 +filter out voxels: 30587 +filter out voxels: 0 +First batch: fn: 0.1578, fp: 84.8209, label 0: tensor(222), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3563312888145447 and after 0.3619924783706665 +num_clicks 50 points_length: 37845 dynamic_size: 26 +filter out voxels: 37323 +filter out voxels: 0 +First batch: fn: 0.3797, fp: 100.8102, label 0: tensor(140), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3590932786464691 and after 0.3628275394439697 +num_clicks 50 points_length: 41997 dynamic_size: 47 +filter out voxels: 44799 +filter out voxels: 0 +First batch: fn: 0.4652, fp: 120.5749, label 0: tensor(132), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35935670137405396 and after 0.3671167492866516 +num_clicks 50 points_length: 41169 dynamic_size: 15 +filter out voxels: 54207 +filter out voxels: 0 +First batch: fn: 0.2701, fp: 145.7754, label 0: tensor(129), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36023280024528503 and after 0.3733687698841095 +num_clicks 50 points_length: 39878 dynamic_size: 23 +filter out voxels: 58801 +filter out voxels: 0 +First batch: fn: 0.1898, fp: 157.7193, label 0: tensor(74), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35947197675704956 and after 0.375008225440979 +num_clicks 50 points_length: 39410 dynamic_size: 45 +filter out voxels: 64544 +filter out voxels: 0 +First batch: fn: 0.1283, fp: 173.2246, label 0: tensor(111), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3601907193660736 and after 0.3784484565258026 +num_clicks 50 points_length: 38736 dynamic_size: 50 +filter out voxels: 63722 +filter out voxels: 0 +First batch: fn: 0.1444, fp: 170.8556, label 0: tensor(110), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36034858226776123 and after 0.37950268387794495 +num_clicks 50 points_length: 38563 dynamic_size: 50 +filter out voxels: 64147 +filter out voxels: 0 +First batch: fn: 0.1444, fp: 172.0000, label 0: tensor(96), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35889068245887756 and after 0.38238534331321716 +epoch: 4/20, iter: 0/42: loss:3.1608: rank:-1 +[22:41:04.292] epoch: 4/20, iter: 0/42: loss:3.1608: rank:-1 +num_clicks 50 points_length: 1945 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(227) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1101529449224472 and after 0.12999071180820465 +num_clicks 50 points_length: 42347 dynamic_size: 13 +filter out voxels: 15950 +filter out voxels: 31646 +First batch: fn: 0.6265, fp: 2.3448, label 0: tensor(76), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1613544076681137 and after 0.18297316133975983 +num_clicks 50 points_length: 51113 dynamic_size: 29 +filter out voxels: 19226 +filter out voxels: 27217 +First batch: fn: 0.2321, fp: 3.3543, label 0: tensor(268), label 1: tensor(297) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18094472587108612 and after 0.21424497663974762 +num_clicks 50 points_length: 45543 dynamic_size: 6 +filter out voxels: 15021 +filter out voxels: 28125 +First batch: fn: 0.0792, fp: 3.1163, label 0: tensor(296), label 1: tensor(233) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18977214395999908 and after 0.22816164791584015 +num_clicks 50 points_length: 42649 dynamic_size: 26 +filter out voxels: 13155 +filter out voxels: 30541 +First batch: fn: 0.0197, fp: 2.9728, label 0: tensor(466), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1989380419254303 and after 0.24271021783351898 +num_clicks 50 points_length: 38161 dynamic_size: 35 +filter out voxels: 11547 +filter out voxels: 31465 +First batch: fn: 0.0138, fp: 2.6638, label 0: tensor(498), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2054051011800766 and after 0.2491956204175949 +num_clicks 50 points_length: 37303 dynamic_size: 4 +filter out voxels: 11528 +filter out voxels: 29476 +First batch: fn: 0.0048, fp: 2.6126, label 0: tensor(496), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2081564962863922 and after 0.25622016191482544 +num_clicks 50 points_length: 35397 dynamic_size: 7 +filter out voxels: 11149 +filter out voxels: 30522 +First batch: fn: 0.0028, fp: 2.4808, label 0: tensor(504), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20753252506256104 and after 0.2656068801879883 +num_clicks 50 points_length: 32264 dynamic_size: 32 +filter out voxels: 10494 +filter out voxels: 32447 +First batch: fn: 0.0047, fp: 2.2591, label 0: tensor(517), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20989449322223663 and after 0.2599570155143738 +num_clicks 50 points_length: 33829 dynamic_size: 22 +filter out voxels: 11101 +filter out voxels: 32663 +First batch: fn: 0.0024, fp: 2.3712, label 0: tensor(520), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2102188915014267 and after 0.2732354998588562 +num_clicks 50 points_length: 30127 dynamic_size: 43 +filter out voxels: 10183 +filter out voxels: 33579 +First batch: fn: 0.0063, fp: 2.1076, label 0: tensor(543), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21373817324638367 and after 0.26894304156303406 +epoch: 4/20, iter: 1/42: loss:3.4804: rank:-1 +[22:41:21.118] epoch: 4/20, iter: 1/42: loss:3.4804: rank:-1 +num_clicks 50 points_length: 969 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33352982997894287 and after 0.24191053211688995 +num_clicks 50 points_length: 6814 dynamic_size: 32 +filter out voxels: 5999 +filter out voxels: 0 +First batch: fn: 0.8411, fp: 6.1909, label 0: tensor(26), label 1: tensor(181) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35942700505256653 and after 0.3605154752731323 +num_clicks 50 points_length: 9802 dynamic_size: 11 +filter out voxels: 9316 +filter out voxels: 100 +First batch: fn: 0.0774, fp: 10.0382, label 0: tensor(118), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36563652753829956 and after 0.37680453062057495 +num_clicks 50 points_length: 8887 dynamic_size: 43 +filter out voxels: 8586 +filter out voxels: 13 +First batch: fn: 0.0949, fp: 9.0764, label 0: tensor(116), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3691278100013733 and after 0.3633088171482086 +num_clicks 50 points_length: 11348 dynamic_size: 5 +filter out voxels: 11058 +filter out voxels: 0 +First batch: fn: 0.1063, fp: 11.6047, label 0: tensor(90), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3696680963039398 and after 0.35202401876449585 +num_clicks 50 points_length: 15113 dynamic_size: 10 +filter out voxels: 14802 +filter out voxels: 0 +First batch: fn: 0.0712, fp: 15.5253, label 0: tensor(79), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36916208267211914 and after 0.3479766249656677 +num_clicks 50 points_length: 16637 dynamic_size: 10 +filter out voxels: 16341 +filter out voxels: 0 +First batch: fn: 0.0619, fp: 17.1073, label 0: tensor(105), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3691761791706085 and after 0.3500491976737976 +num_clicks 50 points_length: 16229 dynamic_size: 5 +filter out voxels: 15956 +filter out voxels: 0 +First batch: fn: 0.1094, fp: 16.6388, label 0: tensor(57), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.369270384311676 and after 0.3491930663585663 +num_clicks 50 points_length: 17567 dynamic_size: 5 +filter out voxels: 17282 +filter out voxels: 0 +First batch: fn: 0.0609, fp: 18.0681, label 0: tensor(80), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3696037232875824 and after 0.3552662134170532 +num_clicks 50 points_length: 16443 dynamic_size: 31 +filter out voxels: 16173 +filter out voxels: 0 +First batch: fn: 0.0784, fp: 16.8906, label 0: tensor(87), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3690311908721924 and after 0.35740044713020325 +num_clicks 50 points_length: 16675 dynamic_size: 44 +filter out voxels: 16414 +filter out voxels: 0 +First batch: fn: 0.0918, fp: 17.1166, label 0: tensor(105), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3694245517253876 and after 0.35999518632888794 +epoch: 4/20, iter: 2/42: loss:3.3103: rank:-1 +[22:41:33.908] epoch: 4/20, iter: 2/42: loss:3.3103: rank:-1 +num_clicks 50 points_length: 149 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2754901349544525 and after 0.2739033102989197 +num_clicks 50 points_length: 10631 dynamic_size: 5 +filter out voxels: 11187 +filter out voxels: 1986 +First batch: fn: 0.1208, fp: 82.4027, label 0: tensor(156), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29418954253196716 and after 0.3389246463775635 +num_clicks 50 points_length: 10119 dynamic_size: 4 +filter out voxels: 9828 +filter out voxels: 3909 +First batch: fn: 0.0470, fp: 72.3826, label 0: tensor(161), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26361942291259766 and after 0.3205263316631317 +num_clicks 50 points_length: 11050 dynamic_size: 20 +filter out voxels: 10224 +filter out voxels: 6191 +First batch: fn: 0.1074, fp: 74.0537, label 0: tensor(123), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2537415325641632 and after 0.31651654839515686 +num_clicks 50 points_length: 10434 dynamic_size: 42 +filter out voxels: 9658 +filter out voxels: 7745 +First batch: fn: 0.1141, fp: 69.9128, label 0: tensor(170), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2510855197906494 and after 0.3218795955181122 +num_clicks 50 points_length: 9272 dynamic_size: 50 +filter out voxels: 8632 +filter out voxels: 8360 +First batch: fn: 0.1409, fp: 62.0872, label 0: tensor(161), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25872644782066345 and after 0.3300716280937195 +num_clicks 50 points_length: 9912 dynamic_size: 1 +filter out voxels: 9210 +filter out voxels: 8250 +First batch: fn: 0.1275, fp: 66.3960, label 0: tensor(109), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2445075511932373 and after 0.331510454416275 +num_clicks 50 points_length: 9784 dynamic_size: 48 +filter out voxels: 9053 +filter out voxels: 8354 +First batch: fn: 0.1342, fp: 65.5302, label 0: tensor(174), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26342737674713135 and after 0.3413938283920288 +num_clicks 50 points_length: 9979 dynamic_size: 43 +filter out voxels: 9288 +filter out voxels: 7928 +First batch: fn: 0.1342, fp: 66.8389, label 0: tensor(152), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28287914395332336 and after 0.354011207818985 +num_clicks 50 points_length: 10057 dynamic_size: 42 +filter out voxels: 9353 +filter out voxels: 7449 +First batch: fn: 0.1342, fp: 67.3624, label 0: tensor(167), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2689082622528076 and after 0.3462485671043396 +num_clicks 50 points_length: 9934 dynamic_size: 30 +filter out voxels: 9254 +filter out voxels: 8054 +First batch: fn: 0.1342, fp: 66.5369, label 0: tensor(104), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27878227829933167 and after 0.3520248532295227 +epoch: 4/20, iter: 3/42: loss:3.1117: rank:-1 +[22:41:44.713] epoch: 4/20, iter: 3/42: loss:3.1117: rank:-1 +num_clicks 50 points_length: 32511 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43184593319892883 and after 0.37881314754486084 +num_clicks 50 points_length: 36919 dynamic_size: 34 +filter out voxels: 1517 +filter out voxels: 0 +First batch: fn: 0.7155, fp: 0.4201, label 0: tensor(68), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5433247685432434 and after 0.5092501044273376 +num_clicks 50 points_length: 32253 dynamic_size: 45 +filter out voxels: 2932 +filter out voxels: 0 +First batch: fn: 0.4793, fp: 0.5128, label 0: tensor(159), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6079568862915039 and after 0.5773746371269226 +num_clicks 50 points_length: 27202 dynamic_size: 7 +filter out voxels: 3052 +filter out voxels: 0 +First batch: fn: 0.3040, fp: 0.5327, label 0: tensor(221), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6232367753982544 and after 0.6107884645462036 +num_clicks 50 points_length: 23424 dynamic_size: 7 +filter out voxels: 2678 +filter out voxels: 0 +First batch: fn: 0.2023, fp: 0.5182, label 0: tensor(135), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6293376684188843 and after 0.6316967606544495 +num_clicks 50 points_length: 22641 dynamic_size: 9 +filter out voxels: 2608 +filter out voxels: 0 +First batch: fn: 0.1252, fp: 0.5712, label 0: tensor(173), label 1: tensor(461) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6325926780700684 and after 0.6508311033248901 +num_clicks 50 points_length: 21189 dynamic_size: 33 +filter out voxels: 2394 +filter out voxels: 0 +First batch: fn: 0.0679, fp: 0.5838, label 0: tensor(368), label 1: tensor(301) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6550585627555847 and after 0.6743878126144409 +num_clicks 50 points_length: 18552 dynamic_size: 5 +filter out voxels: 1902 +filter out voxels: 0 +First batch: fn: 0.0615, fp: 0.5091, label 0: tensor(462), label 1: tensor(242) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6649919748306274 and after 0.6948925256729126 +num_clicks 50 points_length: 15952 dynamic_size: 14 +filter out voxels: 1345 +filter out voxels: 0 +First batch: fn: 0.0606, fp: 0.4300, label 0: tensor(383), label 1: tensor(330) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6970049142837524 and after 0.727769136428833 +num_clicks 50 points_length: 11696 dynamic_size: 40 +filter out voxels: 18 +filter out voxels: 0 +First batch: fn: 0.0430, fp: 0.3168, label 0: tensor(534), label 1: tensor(240) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6992536187171936 and after 0.7401384115219116 +num_clicks 50 points_length: 10556 dynamic_size: 7 +filter out voxels: 6 +filter out voxels: 0 +First batch: fn: 0.0492, fp: 0.2754, label 0: tensor(507), label 1: tensor(279) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7105599641799927 and after 0.7514297962188721 +epoch: 4/20, iter: 4/42: loss:2.2315: rank:-1 +[22:42:05.697] epoch: 4/20, iter: 4/42: loss:2.2315: rank:-1 +num_clicks 50 points_length: 22246 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29323941469192505 and after 0.48805660009384155 +num_clicks 50 points_length: 15814 dynamic_size: 16 +filter out voxels: 4250 +filter out voxels: 0 +First batch: fn: 0.2084, fp: 0.5025, label 0: tensor(413), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.354020893573761 and after 0.5412669777870178 +num_clicks 50 points_length: 12064 dynamic_size: 36 +filter out voxels: 1815 +filter out voxels: 0 +First batch: fn: 0.0350, fp: 0.5073, label 0: tensor(534), label 1: tensor(213) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4310656487941742 and after 0.6203562617301941 +num_clicks 50 points_length: 9653 dynamic_size: 24 +filter out voxels: 253 +filter out voxels: 0 +First batch: fn: 0.0148, fp: 0.4191, label 0: tensor(523), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.465800404548645 and after 0.6697278022766113 +num_clicks 50 points_length: 9707 dynamic_size: 7 +filter out voxels: 244 +filter out voxels: 0 +First batch: fn: 0.0063, fp: 0.4301, label 0: tensor(507), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4785628318786621 and after 0.7176124453544617 +num_clicks 50 points_length: 8291 dynamic_size: 18 +filter out voxels: 187 +filter out voxels: 0 +First batch: fn: 0.0072, fp: 0.3655, label 0: tensor(517), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5000515580177307 and after 0.7465062141418457 +num_clicks 50 points_length: 7595 dynamic_size: 15 +filter out voxels: 153 +filter out voxels: 0 +First batch: fn: 0.0074, fp: 0.3340, label 0: tensor(515), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5035322308540344 and after 0.7593075037002563 +num_clicks 50 points_length: 6613 dynamic_size: 34 +filter out voxels: 60 +filter out voxels: 4 +First batch: fn: 0.0113, fp: 0.2859, label 0: tensor(532), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5095514059066772 and after 0.7769131064414978 +num_clicks 50 points_length: 6335 dynamic_size: 48 +filter out voxels: 56 +filter out voxels: 5 +First batch: fn: 0.0112, fp: 0.2735, label 0: tensor(546), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5081820487976074 and after 0.7883686423301697 +num_clicks 50 points_length: 6108 dynamic_size: 24 +filter out voxels: 51 +filter out voxels: 12 +First batch: fn: 0.0116, fp: 0.2629, label 0: tensor(524), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5034044981002808 and after 0.8020604848861694 +num_clicks 50 points_length: 5933 dynamic_size: 5 +filter out voxels: 57 +filter out voxels: 45 +First batch: fn: 0.0094, fp: 0.2573, label 0: tensor(505), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5038535594940186 and after 0.8083540797233582 +epoch: 4/20, iter: 5/42: loss:2.1745: rank:-1 +[22:42:25.713] epoch: 4/20, iter: 5/42: loss:2.1745: rank:-1 +num_clicks 50 points_length: 192 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.025281384587287903 and after 0.06267790496349335 +num_clicks 50 points_length: 5616 dynamic_size: 10 +filter out voxels: 2279 +filter out voxels: 5380 +First batch: fn: 0.6916, fp: 7.5602, label 0: tensor(9), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0197609756141901 and after 0.0679432675242424 +num_clicks 50 points_length: 7708 dynamic_size: 22 +filter out voxels: 4549 +filter out voxels: 7965 +First batch: fn: 0.4582, fp: 9.0111, label 0: tensor(22), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.018552470952272415 and after 0.05756102129817009 +num_clicks 50 points_length: 8149 dynamic_size: 34 +filter out voxels: 5772 +filter out voxels: 12698 +First batch: fn: 0.5160, fp: 9.4951, label 0: tensor(32), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.015523932874202728 and after 0.05848434567451477 +num_clicks 50 points_length: 7957 dynamic_size: 46 +filter out voxels: 5692 +filter out voxels: 13439 +First batch: fn: 0.5037, fp: 9.2715, label 0: tensor(42), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.015016388148069382 and after 0.06242569163441658 +num_clicks 50 points_length: 7761 dynamic_size: 37 +filter out voxels: 5584 +filter out voxels: 14316 +First batch: fn: 0.4521, fp: 9.0823, label 0: tensor(34), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01550040952861309 and after 0.06573912501335144 +num_clicks 50 points_length: 7856 dynamic_size: 35 +filter out voxels: 5647 +filter out voxels: 15469 +First batch: fn: 0.4054, fp: 9.2457, label 0: tensor(36), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.01644764095544815 and after 0.07009018957614899 +num_clicks 50 points_length: 7486 dynamic_size: 40 +filter out voxels: 5399 +filter out voxels: 15097 +First batch: fn: 0.3870, fp: 8.8096, label 0: tensor(49), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.016860119998455048 and after 0.07535189390182495 +num_clicks 50 points_length: 7387 dynamic_size: 44 +filter out voxels: 5343 +filter out voxels: 14720 +First batch: fn: 0.3342, fp: 8.7408, label 0: tensor(39), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.018777823075652122 and after 0.0754537358880043 +num_clicks 50 points_length: 7561 dynamic_size: 1 +filter out voxels: 5455 +filter out voxels: 14886 +First batch: fn: 0.3157, fp: 8.9730, label 0: tensor(1), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.018205517902970314 and after 0.06872440874576569 +num_clicks 50 points_length: 9261 dynamic_size: 34 +filter out voxels: 6263 +filter out voxels: 15985 +First batch: fn: 0.2543, fp: 11.1229, label 0: tensor(48), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.029361102730035782 and after 0.0781206488609314 +epoch: 4/20, iter: 6/42: loss:4.3796: rank:-1 +[22:42:35.074] epoch: 4/20, iter: 6/42: loss:4.3796: rank:-1 +num_clicks 50 points_length: 1557 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45758116245269775 and after 0.5326672792434692 +num_clicks 50 points_length: 1413 dynamic_size: 19 +filter out voxels: 68 +filter out voxels: 9 +First batch: fn: 0.7579, fp: 0.1496, label 0: tensor(36), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4968618154525757 and after 0.743544340133667 +num_clicks 50 points_length: 1089 dynamic_size: 27 +filter out voxels: 75 +filter out voxels: 6 +First batch: fn: 0.1490, fp: 0.5504, label 0: tensor(241), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6850818395614624 and after 0.8131703734397888 +num_clicks 50 points_length: 605 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 5 +First batch: fn: 0.0880, fp: 0.3006, label 0: tensor(100), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6849949359893799 and after 0.8378878831863403 +num_clicks 50 points_length: 499 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.0462, fp: 0.2742, label 0: tensor(135), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6670724153518677 and after 0.8453752994537354 +num_clicks 50 points_length: 405 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0443, fp: 0.2158, label 0: tensor(100), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7036038637161255 and after 0.8621827363967896 +num_clicks 50 points_length: 387 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0353, fp: 0.2132, label 0: tensor(119), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7207444906234741 and after 0.8754382729530334 +num_clicks 50 points_length: 353 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0353, fp: 0.1914, label 0: tensor(103), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6877866387367249 and after 0.8662035465240479 +num_clicks 50 points_length: 348 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0257, fp: 0.1978, label 0: tensor(120), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7121086120605469 and after 0.8830787539482117 +num_clicks 50 points_length: 331 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0334, fp: 0.1792, label 0: tensor(98), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6906661987304688 and after 0.8789550065994263 +num_clicks 50 points_length: 338 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0238, fp: 0.1933, label 0: tensor(121), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7146136164665222 and after 0.889056921005249 +epoch: 4/20, iter: 7/42: loss:1.758: rank:-1 +[22:42:46.419] epoch: 4/20, iter: 7/42: loss:1.758: rank:-1 +num_clicks 50 points_length: 66211 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5747090578079224 and after 0.3675824999809265 +num_clicks 50 points_length: 48986 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 356 +First batch: fn: 0.8224, fp: 0.0047, label 0: tensor(75), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6739510297775269 and after 0.5347933769226074 +num_clicks 50 points_length: 38078 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 30 +First batch: fn: 0.7007, fp: 0.0117, label 0: tensor(216), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7151108980178833 and after 0.622123122215271 +num_clicks 50 points_length: 33574 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6011, fp: 0.0162, label 0: tensor(323), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7341092228889465 and after 0.6678344011306763 +num_clicks 50 points_length: 29565 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5594, fp: 0.0120, label 0: tensor(255), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7577105760574341 and after 0.7130815982818604 +num_clicks 50 points_length: 25645 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5048, fp: 0.0235, label 0: tensor(417), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7556194067001343 and after 0.7319033145904541 +num_clicks 50 points_length: 23570 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4883, fp: 0.0226, label 0: tensor(472), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.754428505897522 and after 0.7490651607513428 +num_clicks 50 points_length: 22155 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4681, fp: 0.0235, label 0: tensor(480), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.755812406539917 and after 0.7658557891845703 +num_clicks 50 points_length: 19604 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4619, fp: 0.0183, label 0: tensor(417), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7589917182922363 and after 0.8014260530471802 +num_clicks 50 points_length: 14924 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4283, fp: 0.0152, label 0: tensor(344), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7821639776229858 and after 0.8398082256317139 +num_clicks 50 points_length: 13099 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3517, fp: 0.0158, label 0: tensor(339), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8206021785736084 and after 0.8706495761871338 +epoch: 4/20, iter: 8/42: loss:1.9747: rank:-1 +[22:43:07.865] epoch: 4/20, iter: 8/42: loss:1.9747: rank:-1 +num_clicks 50 points_length: 230557 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12652018666267395 and after 0.06656438112258911 +num_clicks 50 points_length: 220052 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 501 +First batch: fn: 0.9790, fp: 0.0000, label 0: tensor(0), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1996922492980957 and after 0.1305239349603653 +num_clicks 50 points_length: 206484 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 369 +First batch: fn: 0.9646, fp: 0.0002, label 0: tensor(20), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24078887701034546 and after 0.20083528757095337 +num_clicks 50 points_length: 192294 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 45 +First batch: fn: 0.9388, fp: 0.0003, label 0: tensor(8), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3116125464439392 and after 0.25568583607673645 +num_clicks 50 points_length: 181767 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 36 +First batch: fn: 0.9128, fp: 0.0016, label 0: tensor(66), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32894599437713623 and after 0.27133283019065857 +num_clicks 50 points_length: 178655 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.9044, fp: 0.0010, label 0: tensor(46), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3434920907020569 and after 0.30738529562950134 +num_clicks 50 points_length: 168799 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8950, fp: 0.0009, label 0: tensor(40), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38189008831977844 and after 0.3324541449546814 +num_clicks 50 points_length: 161207 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8887, fp: 0.0007, label 0: tensor(37), label 1: tensor(550) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3990131616592407 and after 0.3457631468772888 +num_clicks 50 points_length: 158017 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8822, fp: 0.0004, label 0: tensor(36), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4133113622665405 and after 0.37097156047821045 +num_clicks 50 points_length: 151680 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8699, fp: 0.0007, label 0: tensor(92), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.403231143951416 and after 0.38884279131889343 +num_clicks 50 points_length: 146624 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8624, fp: 0.0003, label 0: tensor(32), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4191117286682129 and after 0.41762155294418335 +epoch: 4/20, iter: 9/42: loss:4.1588: rank:-1 +[22:43:30.451] epoch: 4/20, iter: 9/42: loss:4.1588: rank:-1 +num_clicks 50 points_length: 323853 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09105333685874939 and after 0.05896412581205368 +num_clicks 50 points_length: 315626 dynamic_size: 7 +filter out voxels: 155 +filter out voxels: 0 +First batch: fn: 0.9890, fp: 0.0086, label 0: tensor(3), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13307833671569824 and after 0.11882705241441727 +num_clicks 50 points_length: 297365 dynamic_size: 29 +filter out voxels: 108 +filter out voxels: 0 +First batch: fn: 0.9759, fp: 0.0084, label 0: tensor(5), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1593533754348755 and after 0.15956127643585205 +num_clicks 50 points_length: 284106 dynamic_size: 9 +filter out voxels: 65 +filter out voxels: 0 +First batch: fn: 0.9661, fp: 0.0088, label 0: tensor(12), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1749342978000641 and after 0.1809900850057602 +num_clicks 50 points_length: 276232 dynamic_size: 22 +filter out voxels: 24 +filter out voxels: 0 +First batch: fn: 0.9620, fp: 0.0095, label 0: tensor(12), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18979839980602264 and after 0.20513278245925903 +num_clicks 50 points_length: 269907 dynamic_size: 17 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.9505, fp: 0.0098, label 0: tensor(11), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19983519613742828 and after 0.23017336428165436 +num_clicks 50 points_length: 261379 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9426, fp: 0.0108, label 0: tensor(114), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1982722133398056 and after 0.2351205199956894 +num_clicks 50 points_length: 258774 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9430, fp: 0.0081, label 0: tensor(52), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20751528441905975 and after 0.25421276688575745 +num_clicks 50 points_length: 252626 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9353, fp: 0.0090, label 0: tensor(98), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2061215341091156 and after 0.2583377957344055 +num_clicks 50 points_length: 249472 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9378, fp: 0.0080, label 0: tensor(87), label 1: tensor(544) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21139346063137054 and after 0.2718052268028259 +num_clicks 50 points_length: 245301 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9323, fp: 0.0073, label 0: tensor(198), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20161359012126923 and after 0.2680128812789917 +epoch: 4/20, iter: 10/42: loss:5.689: rank:-1 +[22:43:53.249] epoch: 4/20, iter: 10/42: loss:5.689: rank:-1 +num_clicks 50 points_length: 868 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26307743787765503 and after 0.41160184144973755 +num_clicks 50 points_length: 1073 dynamic_size: 21 +filter out voxels: 2295 +filter out voxels: 0 +First batch: fn: 0.6683, fp: 0.6122, label 0: tensor(11), label 1: tensor(246) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12376196682453156 and after 0.5728984475135803 +num_clicks 50 points_length: 605 dynamic_size: 19 +filter out voxels: 4290 +filter out voxels: 0 +First batch: fn: 0.2104, fp: 1.4272, label 0: tensor(26), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29189956188201904 and after 0.5875499844551086 +num_clicks 50 points_length: 507 dynamic_size: 12 +filter out voxels: 5128 +filter out voxels: 0 +First batch: fn: 0.0545, fp: 2.0571, label 0: tensor(83), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31021928787231445 and after 0.603590726852417 +num_clicks 50 points_length: 580 dynamic_size: 24 +filter out voxels: 4069 +filter out voxels: 0 +First batch: fn: 0.0003, fp: 1.8800, label 0: tensor(158), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34126120805740356 and after 0.6771169900894165 +num_clicks 50 points_length: 515 dynamic_size: 11 +filter out voxels: 1493 +filter out voxels: 0 +First batch: fn: 0.0026, fp: 1.1475, label 0: tensor(128), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4365788996219635 and after 0.7567092180252075 +num_clicks 50 points_length: 426 dynamic_size: 9 +filter out voxels: 13 +filter out voxels: 0 +First batch: fn: 0.0037, fp: 0.6593, label 0: tensor(144), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4320125877857208 and after 0.767676055431366 +num_clicks 50 points_length: 464 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0061, fp: 0.5950, label 0: tensor(181), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4341198205947876 and after 0.800757884979248 +num_clicks 50 points_length: 367 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0103, fp: 0.5115, label 0: tensor(169), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4309217035770416 and after 0.8184601068496704 +num_clicks 50 points_length: 362 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0093, fp: 0.4182, label 0: tensor(142), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4173233211040497 and after 0.801109790802002 +num_clicks 50 points_length: 480 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0122, fp: 0.3952, label 0: tensor(128), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43551287055015564 and after 0.828294038772583 +epoch: 4/20, iter: 11/42: loss:2.4941: rank:-1 +[22:44:03.799] epoch: 4/20, iter: 11/42: loss:2.4941: rank:-1 +num_clicks 50 points_length: 2416 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(220) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2514733076095581 and after 0.3202650547027588 +num_clicks 50 points_length: 2098 dynamic_size: 16 +filter out voxels: 58 +filter out voxels: 0 +First batch: fn: 0.2765, fp: 0.5919, label 0: tensor(324), label 1: tensor(164) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29116445779800415 and after 0.3729551434516907 +num_clicks 50 points_length: 1629 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1262, fp: 0.5480, label 0: tensor(246), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35880202054977417 and after 0.4259088635444641 +num_clicks 50 points_length: 1260 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0493, fp: 0.4723, label 0: tensor(193), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40649208426475525 and after 0.4607480764389038 +num_clicks 50 points_length: 945 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0637, fp: 0.3274, label 0: tensor(115), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4074893891811371 and after 0.46552222967147827 +num_clicks 50 points_length: 987 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0393, fp: 0.3692, label 0: tensor(132), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4192515015602112 and after 0.4755557179450989 +num_clicks 50 points_length: 871 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0604, fp: 0.3001, label 0: tensor(161), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42978161573410034 and after 0.47796764969825745 +num_clicks 50 points_length: 874 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0522, fp: 0.3096, label 0: tensor(149), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43566304445266724 and after 0.4839557707309723 +num_clicks 50 points_length: 823 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0617, fp: 0.2790, label 0: tensor(166), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43565505743026733 and after 0.4883071482181549 +num_clicks 50 points_length: 809 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0538, fp: 0.2810, label 0: tensor(168), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4363035261631012 and after 0.49920418858528137 +num_clicks 50 points_length: 737 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0592, fp: 0.2459, label 0: tensor(113), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4384715259075165 and after 0.5016400814056396 +epoch: 4/20, iter: 12/42: loss:4.0873: rank:-1 +[22:44:23.797] epoch: 4/20, iter: 12/42: loss:4.0873: rank:-1 +num_clicks 50 points_length: 168695 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24335677921772003 and after 0.1780332624912262 +num_clicks 50 points_length: 154707 dynamic_size: 11 +filter out voxels: 672 +filter out voxels: 0 +First batch: fn: 0.8951, fp: 0.0220, label 0: tensor(145), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3840717673301697 and after 0.27926233410835266 +num_clicks 50 points_length: 143854 dynamic_size: 14 +filter out voxels: 145 +filter out voxels: 0 +First batch: fn: 0.8438, fp: 0.0089, label 0: tensor(166), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4200060963630676 and after 0.32299602031707764 +num_clicks 50 points_length: 139580 dynamic_size: 30 +filter out voxels: 50 +filter out voxels: 0 +First batch: fn: 0.8188, fp: 0.0086, label 0: tensor(201), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43210506439208984 and after 0.3775659203529358 +num_clicks 50 points_length: 130311 dynamic_size: 33 +filter out voxels: 19 +filter out voxels: 0 +First batch: fn: 0.7639, fp: 0.0085, label 0: tensor(168), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4749908745288849 and after 0.4323594868183136 +num_clicks 50 points_length: 122329 dynamic_size: 12 +filter out voxels: 5 +filter out voxels: 0 +First batch: fn: 0.7170, fp: 0.0082, label 0: tensor(154), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5103415250778198 and after 0.4937455654144287 +num_clicks 50 points_length: 112963 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6546, fp: 0.0150, label 0: tensor(187), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5399511456489563 and after 0.5460315942764282 +num_clicks 50 points_length: 102738 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5938, fp: 0.0153, label 0: tensor(165), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5717647671699524 and after 0.5822849869728088 +num_clicks 50 points_length: 96761 dynamic_size: 16 +filter out voxels: 6 +filter out voxels: 0 +First batch: fn: 0.5489, fp: 0.0247, label 0: tensor(231), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5654599070549011 and after 0.6089814901351929 +num_clicks 50 points_length: 88533 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5045, fp: 0.0203, label 0: tensor(166), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6027774810791016 and after 0.6374496221542358 +num_clicks 50 points_length: 82261 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4629, fp: 0.0247, label 0: tensor(175), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6187794208526611 and after 0.6644880771636963 +epoch: 4/20, iter: 13/42: loss:3.2689: rank:-1 +[22:44:46.900] epoch: 4/20, iter: 13/42: loss:3.2689: rank:-1 +num_clicks 50 points_length: 9557 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6829555034637451 and after 0.662223219871521 +num_clicks 50 points_length: 9507 dynamic_size: 28 +filter out voxels: 168 +filter out voxels: 14 +First batch: fn: 0.2949, fp: 0.6999, label 0: tensor(498), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.742550253868103 and after 0.7390867471694946 +num_clicks 50 points_length: 7402 dynamic_size: 6 +filter out voxels: 102 +filter out voxels: 0 +First batch: fn: 0.1223, fp: 0.6522, label 0: tensor(506), label 1: tensor(204) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7736901044845581 and after 0.7655205726623535 +num_clicks 50 points_length: 6874 dynamic_size: 24 +filter out voxels: 97 +filter out voxels: 1 +First batch: fn: 0.1022, fp: 0.6170, label 0: tensor(520), label 1: tensor(197) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7776447534561157 and after 0.7910575866699219 +num_clicks 50 points_length: 6420 dynamic_size: 12 +filter out voxels: 110 +filter out voxels: 0 +First batch: fn: 0.0822, fp: 0.5895, label 0: tensor(510), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.785761296749115 and after 0.8079147338867188 +num_clicks 50 points_length: 6174 dynamic_size: 32 +filter out voxels: 118 +filter out voxels: 0 +First batch: fn: 0.0676, fp: 0.5784, label 0: tensor(531), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7834243178367615 and after 0.8224451541900635 +num_clicks 50 points_length: 5696 dynamic_size: 20 +filter out voxels: 118 +filter out voxels: 0 +First batch: fn: 0.0589, fp: 0.5371, label 0: tensor(519), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7874253988265991 and after 0.8314826488494873 +num_clicks 50 points_length: 5556 dynamic_size: 38 +filter out voxels: 117 +filter out voxels: 0 +First batch: fn: 0.0544, fp: 0.5269, label 0: tensor(536), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7884989976882935 and after 0.8473703861236572 +num_clicks 50 points_length: 4993 dynamic_size: 20 +filter out voxels: 114 +filter out voxels: 0 +First batch: fn: 0.0604, fp: 0.4621, label 0: tensor(518), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7887643575668335 and after 0.8568702936172485 +num_clicks 50 points_length: 4698 dynamic_size: 33 +filter out voxels: 121 +filter out voxels: 0 +First batch: fn: 0.0647, fp: 0.4269, label 0: tensor(528), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7899640798568726 and after 0.8649957180023193 +num_clicks 50 points_length: 4548 dynamic_size: 28 +filter out voxels: 125 +filter out voxels: 0 +First batch: fn: 0.0539, fp: 0.4220, label 0: tensor(525), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7879465818405151 and after 0.8709815740585327 +epoch: 4/20, iter: 14/42: loss:1.5618: rank:-1 +[22:45:07.842] epoch: 4/20, iter: 14/42: loss:1.5618: rank:-1 +num_clicks 50 points_length: 939 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32674527168273926 and after 0.33955615758895874 +num_clicks 50 points_length: 5480 dynamic_size: 33 +filter out voxels: 1071 +filter out voxels: 5083 +First batch: fn: 0.6580, fp: 0.0524, label 0: tensor(2), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3892046809196472 and after 0.38623517751693726 +num_clicks 50 points_length: 9058 dynamic_size: 23 +filter out voxels: 1048 +filter out voxels: 8042 +First batch: fn: 0.5481, fp: 0.0525, label 0: tensor(2), label 1: tensor(157) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3804309368133545 and after 0.4617992043495178 +num_clicks 50 points_length: 5509 dynamic_size: 42 +filter out voxels: 1040 +filter out voxels: 4901 +First batch: fn: 0.4615, fp: 0.0628, label 0: tensor(4), label 1: tensor(120) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3946905732154846 and after 0.5005172491073608 +num_clicks 50 points_length: 4505 dynamic_size: 44 +filter out voxels: 877 +filter out voxels: 3990 +First batch: fn: 0.4174, fp: 0.0618, label 0: tensor(0), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39343154430389404 and after 0.5419007539749146 +num_clicks 50 points_length: 3649 dynamic_size: 5 +filter out voxels: 874 +filter out voxels: 3224 +First batch: fn: 0.3548, fp: 0.0809, label 0: tensor(1), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40390971302986145 and after 0.5790595412254333 +num_clicks 50 points_length: 2792 dynamic_size: 40 +filter out voxels: 821 +filter out voxels: 2412 +First batch: fn: 0.3344, fp: 0.0870, label 0: tensor(7), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4192500114440918 and after 0.6251938343048096 +num_clicks 50 points_length: 2079 dynamic_size: 12 +filter out voxels: 674 +filter out voxels: 1707 +First batch: fn: 0.3072, fp: 0.0835, label 0: tensor(1), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4269678592681885 and after 0.682226300239563 +num_clicks 50 points_length: 1409 dynamic_size: 40 +filter out voxels: 729 +filter out voxels: 1094 +First batch: fn: 0.2695, fp: 0.1001, label 0: tensor(12), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4640023708343506 and after 0.8135468363761902 +num_clicks 50 points_length: 449 dynamic_size: 20 +filter out voxels: 516 +filter out voxels: 184 +First batch: fn: 0.2145, fp: 0.1191, label 0: tensor(5), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5969637632369995 and after 0.8396614193916321 +num_clicks 50 points_length: 323 dynamic_size: 17 +filter out voxels: 512 +filter out voxels: 58 +First batch: fn: 0.1928, fp: 0.1414, label 0: tensor(4), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6351050138473511 and after 0.8271734714508057 +epoch: 4/20, iter: 15/42: loss:2.3385: rank:-1 +[22:45:18.241] epoch: 4/20, iter: 15/42: loss:2.3385: rank:-1 +num_clicks 50 points_length: 1040 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14757946133613586 and after 0.3758542239665985 +num_clicks 50 points_length: 1617 dynamic_size: 19 +filter out voxels: 1153 +filter out voxels: 47 +First batch: fn: 0.2077, fp: 1.3471, label 0: tensor(79), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14112815260887146 and after 0.5821182727813721 +num_clicks 50 points_length: 496 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 127 +First batch: fn: 0.0308, fp: 0.4462, label 0: tensor(117), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2274298220872879 and after 0.688826322555542 +num_clicks 50 points_length: 441 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 73 +First batch: fn: 0.0221, fp: 0.4019, label 0: tensor(143), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31927990913391113 and after 0.7790035009384155 +num_clicks 50 points_length: 332 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 47 +First batch: fn: 0.0413, fp: 0.2779, label 0: tensor(90), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35167020559310913 and after 0.8028547763824463 +num_clicks 50 points_length: 316 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 37 +First batch: fn: 0.0471, fp: 0.2567, label 0: tensor(66), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3665021061897278 and after 0.8131084442138672 +num_clicks 50 points_length: 323 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 37 +First batch: fn: 0.0452, fp: 0.2654, label 0: tensor(59), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3770723044872284 and after 0.8227604627609253 +num_clicks 50 points_length: 307 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 43 +First batch: fn: 0.0413, fp: 0.2538, label 0: tensor(64), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37845849990844727 and after 0.8291000723838806 +num_clicks 50 points_length: 315 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 48 +First batch: fn: 0.0413, fp: 0.2615, label 0: tensor(97), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3830907940864563 and after 0.836477518081665 +num_clicks 50 points_length: 289 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 36 +First batch: fn: 0.0548, fp: 0.2231, label 0: tensor(53), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3821028769016266 and after 0.8379461765289307 +num_clicks 50 points_length: 311 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 54 +First batch: fn: 0.0385, fp: 0.2606, label 0: tensor(63), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38261452317237854 and after 0.8425004482269287 +epoch: 4/20, iter: 16/42: loss:2.4282: rank:-1 +[22:45:30.068] epoch: 4/20, iter: 16/42: loss:2.4282: rank:-1 +num_clicks 50 points_length: 15618 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7145768404006958 and after 0.7104842662811279 +num_clicks 50 points_length: 4098 dynamic_size: 35 +filter out voxels: 305 +filter out voxels: 0 +First batch: fn: 0.5656, fp: 0.1282, label 0: tensor(437), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7065984010696411 and after 0.7219568490982056 +num_clicks 50 points_length: 3339 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5770, fp: 0.1356, label 0: tensor(195), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7063760161399841 and after 0.746841549873352 +num_clicks 50 points_length: 2932 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4844, fp: 0.2599, label 0: tensor(96), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.693423330783844 and after 0.7515937089920044 +num_clicks 50 points_length: 2642 dynamic_size: 3 +filter out voxels: 159 +filter out voxels: 0 +First batch: fn: 0.4269, fp: 0.3960, label 0: tensor(104), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6882351040840149 and after 0.7620735168457031 +num_clicks 50 points_length: 2194 dynamic_size: 50 +filter out voxels: 94 +filter out voxels: 0 +First batch: fn: 0.3876, fp: 0.4610, label 0: tensor(26), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6855024099349976 and after 0.771837592124939 +num_clicks 50 points_length: 2451 dynamic_size: 11 +filter out voxels: 124 +filter out voxels: 0 +First batch: fn: 0.3310, fp: 0.4996, label 0: tensor(47), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6987544298171997 and after 0.789100706577301 +num_clicks 50 points_length: 2176 dynamic_size: 10 +filter out voxels: 78 +filter out voxels: 0 +First batch: fn: 0.2809, fp: 0.5140, label 0: tensor(126), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7183675169944763 and after 0.8005530834197998 +num_clicks 50 points_length: 2058 dynamic_size: 22 +filter out voxels: 20 +filter out voxels: 0 +First batch: fn: 0.2460, fp: 0.5183, label 0: tensor(110), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7304612994194031 and after 0.8161993622779846 +num_clicks 50 points_length: 1939 dynamic_size: 2 +filter out voxels: 15 +filter out voxels: 0 +First batch: fn: 0.1966, fp: 0.5195, label 0: tensor(34), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7317335605621338 and after 0.8182141780853271 +num_clicks 50 points_length: 2049 dynamic_size: 18 +filter out voxels: 28 +filter out voxels: 0 +First batch: fn: 0.1595, fp: 0.5655, label 0: tensor(73), label 1: tensor(499) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7396482229232788 and after 0.8267284631729126 +epoch: 4/20, iter: 17/42: loss:1.6863: rank:-1 +[22:45:49.574] epoch: 4/20, iter: 17/42: loss:1.6863: rank:-1 +num_clicks 50 points_length: 1326 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31977716088294983 and after 0.19149994850158691 +num_clicks 50 points_length: 6010 dynamic_size: 11 +filter out voxels: 2802 +filter out voxels: 8392 +First batch: fn: 0.4276, fp: 4.1048, label 0: tensor(367), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2505935728549957 and after 0.27594953775405884 +num_clicks 50 points_length: 3190 dynamic_size: 38 +filter out voxels: 2095 +filter out voxels: 7208 +First batch: fn: 0.3733, fp: 2.0324, label 0: tensor(224), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24712421000003815 and after 0.2917056083679199 +num_clicks 50 points_length: 3350 dynamic_size: 20 +filter out voxels: 2457 +filter out voxels: 7831 +First batch: fn: 0.2858, fp: 2.2406, label 0: tensor(193), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24207653105258942 and after 0.30430108308792114 +num_clicks 50 points_length: 3577 dynamic_size: 39 +filter out voxels: 2786 +filter out voxels: 6710 +First batch: fn: 0.2081, fp: 2.4894, label 0: tensor(219), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23498302698135376 and after 0.30903780460357666 +num_clicks 50 points_length: 3828 dynamic_size: 50 +filter out voxels: 3045 +filter out voxels: 6634 +First batch: fn: 0.1365, fp: 2.7504, label 0: tensor(274), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23429590463638306 and after 0.3192932605743408 +num_clicks 50 points_length: 3638 dynamic_size: 9 +filter out voxels: 2905 +filter out voxels: 6273 +First batch: fn: 0.1176, fp: 2.6259, label 0: tensor(170), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23330238461494446 and after 0.3173002004623413 +num_clicks 50 points_length: 3722 dynamic_size: 26 +filter out voxels: 2934 +filter out voxels: 6238 +First batch: fn: 0.0988, fp: 2.7081, label 0: tensor(196), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23211601376533508 and after 0.3236158788204193 +num_clicks 50 points_length: 3470 dynamic_size: 14 +filter out voxels: 2725 +filter out voxels: 6360 +First batch: fn: 0.1063, fp: 2.5106, label 0: tensor(172), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23718847334384918 and after 0.33080872893333435 +num_clicks 50 points_length: 3329 dynamic_size: 23 +filter out voxels: 2597 +filter out voxels: 6500 +First batch: fn: 0.0995, fp: 2.4110, label 0: tensor(203), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24266651272773743 and after 0.34120625257492065 +num_clicks 50 points_length: 3046 dynamic_size: 6 +filter out voxels: 2353 +filter out voxels: 6507 +First batch: fn: 0.1154, fp: 2.1817, label 0: tensor(168), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24555552005767822 and after 0.34263429045677185 +epoch: 4/20, iter: 18/42: loss:3.0849: rank:-1 +[22:46:03.494] epoch: 4/20, iter: 18/42: loss:3.0849: rank:-1 +num_clicks 50 points_length: 672 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09011528640985489 and after 0.3306621313095093 +num_clicks 50 points_length: 1579 dynamic_size: 39 +filter out voxels: 79 +filter out voxels: 1025 +First batch: fn: 0.7429, fp: 0.0456, label 0: tensor(2), label 1: tensor(166) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31247714161872864 and after 0.591606616973877 +num_clicks 50 points_length: 672 dynamic_size: 4 +filter out voxels: 387 +filter out voxels: 132 +First batch: fn: 0.4497, fp: 0.2917, label 0: tensor(1), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3349390923976898 and after 0.6021342873573303 +num_clicks 50 points_length: 799 dynamic_size: 42 +filter out voxels: 567 +filter out voxels: 396 +First batch: fn: 0.2843, fp: 0.4530, label 0: tensor(22), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37587565183639526 and after 0.6378933191299438 +num_clicks 50 points_length: 646 dynamic_size: 15 +filter out voxels: 469 +filter out voxels: 252 +First batch: fn: 0.1787, fp: 0.6473, label 0: tensor(9), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3493252396583557 and after 0.6231426000595093 +num_clicks 50 points_length: 638 dynamic_size: 29 +filter out voxels: 358 +filter out voxels: 246 +First batch: fn: 0.1218, fp: 0.9496, label 0: tensor(47), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41244494915008545 and after 0.641467809677124 +num_clicks 50 points_length: 623 dynamic_size: 30 +filter out voxels: 129 +filter out voxels: 208 +First batch: fn: 0.0932, fp: 0.9107, label 0: tensor(27), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38821253180503845 and after 0.6418483257293701 +num_clicks 50 points_length: 594 dynamic_size: 7 +filter out voxels: 81 +filter out voxels: 196 +First batch: fn: 0.0538, fp: 1.0370, label 0: tensor(58), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4419105350971222 and after 0.6567479372024536 +num_clicks 50 points_length: 575 dynamic_size: 27 +filter out voxels: 11 +filter out voxels: 207 +First batch: fn: 0.0519, fp: 0.9353, label 0: tensor(37), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4004160165786743 and after 0.6529827117919922 +num_clicks 50 points_length: 513 dynamic_size: 16 +filter out voxels: 30 +filter out voxels: 139 +First batch: fn: 0.0242, fp: 1.1615, label 0: tensor(85), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.49126726388931274 and after 0.6906501054763794 +num_clicks 50 points_length: 512 dynamic_size: 43 +filter out voxels: 4 +filter out voxels: 119 +First batch: fn: 0.0538, fp: 0.7795, label 0: tensor(48), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.409285306930542 and after 0.6691685914993286 +epoch: 4/20, iter: 19/42: loss:2.6994: rank:-1 +[22:46:14.322] epoch: 4/20, iter: 19/42: loss:2.6994: rank:-1 +num_clicks 50 points_length: 6549 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(550) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32312890887260437 and after 0.46699854731559753 +num_clicks 50 points_length: 7885 dynamic_size: 36 +filter out voxels: 2462 +filter out voxels: 1687 +First batch: fn: 0.4199, fp: 0.7841, label 0: tensor(457), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46674442291259766 and after 0.585433840751648 +num_clicks 50 points_length: 5479 dynamic_size: 31 +filter out voxels: 817 +filter out voxels: 2660 +First batch: fn: 0.1205, fp: 0.7161, label 0: tensor(526), label 1: tensor(165) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5234346389770508 and after 0.6417298316955566 +num_clicks 50 points_length: 4877 dynamic_size: 14 +filter out voxels: 877 +filter out voxels: 3179 +First batch: fn: 0.0838, fp: 0.6609, label 0: tensor(512), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5447766780853271 and after 0.6771144270896912 +num_clicks 50 points_length: 4284 dynamic_size: 33 +filter out voxels: 899 +filter out voxels: 2793 +First batch: fn: 0.0789, fp: 0.5752, label 0: tensor(361), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5456594228744507 and after 0.687528133392334 +num_clicks 50 points_length: 4228 dynamic_size: 2 +filter out voxels: 863 +filter out voxels: 3852 +First batch: fn: 0.0603, fp: 0.5853, label 0: tensor(461), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5613788366317749 and after 0.7133913040161133 +num_clicks 50 points_length: 4002 dynamic_size: 35 +filter out voxels: 893 +filter out voxels: 3397 +First batch: fn: 0.0615, fp: 0.5495, label 0: tensor(353), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5640227794647217 and after 0.7270550727844238 +num_clicks 50 points_length: 3819 dynamic_size: 9 +filter out voxels: 868 +filter out voxels: 3020 +First batch: fn: 0.0576, fp: 0.5256, label 0: tensor(342), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5850170850753784 and after 0.7597368359565735 +num_clicks 50 points_length: 3714 dynamic_size: 42 +filter out voxels: 875 +filter out voxels: 521 +First batch: fn: 0.0589, fp: 0.5082, label 0: tensor(389), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5906320810317993 and after 0.7721070647239685 +num_clicks 50 points_length: 3505 dynamic_size: 14 +filter out voxels: 838 +filter out voxels: 295 +First batch: fn: 0.0635, fp: 0.4717, label 0: tensor(370), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5937643051147461 and after 0.7722579836845398 +num_clicks 50 points_length: 3466 dynamic_size: 29 +filter out voxels: 806 +filter out voxels: 245 +First batch: fn: 0.0623, fp: 0.4669, label 0: tensor(465), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5854791402816772 and after 0.7917388677597046 +epoch: 4/20, iter: 20/42: loss:1.787: rank:-1 +[22:46:33.860] epoch: 4/20, iter: 20/42: loss:1.787: rank:-1 +num_clicks 50 points_length: 31010 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47762155532836914 and after 0.3609718084335327 +num_clicks 50 points_length: 36643 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 7708 +First batch: fn: 0.4596, fp: 0.4920, label 0: tensor(181), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4953606128692627 and after 0.48469406366348267 +num_clicks 50 points_length: 29347 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 3868 +First batch: fn: 0.3407, fp: 0.4756, label 0: tensor(244), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5660727024078369 and after 0.6152254343032837 +num_clicks 50 points_length: 23684 dynamic_size: 41 +filter out voxels: 2 +filter out voxels: 2986 +First batch: fn: 0.2169, fp: 0.4143, label 0: tensor(303), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6305344104766846 and after 0.7011138200759888 +num_clicks 50 points_length: 18370 dynamic_size: 7 +filter out voxels: 3 +filter out voxels: 2481 +First batch: fn: 0.1566, fp: 0.3985, label 0: tensor(344), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6756765246391296 and after 0.7631389498710632 +num_clicks 50 points_length: 14740 dynamic_size: 15 +filter out voxels: 5 +filter out voxels: 2111 +First batch: fn: 0.1175, fp: 0.3281, label 0: tensor(244), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6891899108886719 and after 0.7841454744338989 +num_clicks 50 points_length: 13468 dynamic_size: 31 +filter out voxels: 12 +filter out voxels: 1821 +First batch: fn: 0.0820, fp: 0.3698, label 0: tensor(496), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6941382884979248 and after 0.8206797242164612 +num_clicks 50 points_length: 11823 dynamic_size: 50 +filter out voxels: 33 +filter out voxels: 879 +First batch: fn: 0.0638, fp: 0.2917, label 0: tensor(548), label 1: tensor(424) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6989458799362183 and after 0.8622296452522278 +num_clicks 50 points_length: 8912 dynamic_size: 44 +filter out voxels: 48 +filter out voxels: 709 +First batch: fn: 0.0594, fp: 0.2333, label 0: tensor(535), label 1: tensor(413) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7091339230537415 and after 0.8821245431900024 +num_clicks 50 points_length: 7061 dynamic_size: 49 +filter out voxels: 59 +filter out voxels: 645 +First batch: fn: 0.0545, fp: 0.2218, label 0: tensor(499), label 1: tensor(417) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7078007459640503 and after 0.892928957939148 +num_clicks 50 points_length: 5529 dynamic_size: 3 +filter out voxels: 75 +filter out voxels: 427 +First batch: fn: 0.0432, fp: 0.2413, label 0: tensor(303), label 1: tensor(321) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7068412899971008 and after 0.8956359624862671 +epoch: 4/20, iter: 21/42: loss:1.8188: rank:-1 +[22:46:55.725] epoch: 4/20, iter: 21/42: loss:1.8188: rank:-1 +num_clicks 50 points_length: 94287 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20990720391273499 and after 0.10364890098571777 +num_clicks 50 points_length: 90802 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9509, fp: 0.0005, label 0: tensor(68), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.268648236989975 and after 0.1785215586423874 +num_clicks 50 points_length: 82868 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9347, fp: 0.0002, label 0: tensor(26), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31396374106407166 and after 0.22403471171855927 +num_clicks 50 points_length: 79419 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9189, fp: 0.0001, label 0: tensor(11), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3221854269504547 and after 0.2511120140552521 +num_clicks 50 points_length: 77824 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9135, fp: 0.0000, label 0: tensor(8), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33084172010421753 and after 0.2633950114250183 +num_clicks 50 points_length: 76663 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9116, fp: 0.0000, label 0: tensor(8), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33272436261177063 and after 0.2875218987464905 +num_clicks 50 points_length: 73276 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9098, fp: 0.0000, label 0: tensor(8), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.344285249710083 and after 0.3125130236148834 +num_clicks 50 points_length: 70510 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9040, fp: 0.0000, label 0: tensor(8), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3554985523223877 and after 0.3298477530479431 +num_clicks 50 points_length: 67721 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9027, fp: 0.0000, label 0: tensor(8), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3584042191505432 and after 0.3544212877750397 +num_clicks 50 points_length: 65088 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8925, fp: 0.0001, label 0: tensor(24), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3903736174106598 and after 0.3865349292755127 +num_clicks 50 points_length: 59928 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8850, fp: 0.0000, label 0: tensor(15), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4282344579696655 and after 0.4190319776535034 +epoch: 4/20, iter: 22/42: loss:4.5704: rank:-1 +[22:47:19.956] epoch: 4/20, iter: 22/42: loss:4.5704: rank:-1 +num_clicks 50 points_length: 873 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17191629111766815 and after 0.1147693395614624 +num_clicks 50 points_length: 16332 dynamic_size: 37 +filter out voxels: 15310 +filter out voxels: 2739 +First batch: fn: 0.3608, fp: 18.3471, label 0: tensor(156), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22709837555885315 and after 0.16326402127742767 +num_clicks 50 points_length: 14068 dynamic_size: 40 +filter out voxels: 12960 +filter out voxels: 2525 +First batch: fn: 0.2841, fp: 15.8305, label 0: tensor(185), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25187668204307556 and after 0.1998347043991089 +num_clicks 50 points_length: 14996 dynamic_size: 25 +filter out voxels: 14052 +filter out voxels: 1909 +First batch: fn: 0.1661, fp: 17.0115, label 0: tensor(192), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26746654510498047 and after 0.224589541554451 +num_clicks 50 points_length: 14163 dynamic_size: 17 +filter out voxels: 13743 +filter out voxels: 1433 +First batch: fn: 0.1340, fp: 16.0893, label 0: tensor(77), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27356836199760437 and after 0.2288852483034134 +num_clicks 50 points_length: 14606 dynamic_size: 30 +filter out voxels: 14300 +filter out voxels: 1345 +First batch: fn: 0.1340, fp: 16.5968, label 0: tensor(80), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27867716550827026 and after 0.2339102178812027 +num_clicks 50 points_length: 15203 dynamic_size: 39 +filter out voxels: 14873 +filter out voxels: 1291 +First batch: fn: 0.1145, fp: 17.3001, label 0: tensor(82), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2819107174873352 and after 0.23868921399116516 +num_clicks 50 points_length: 14638 dynamic_size: 42 +filter out voxels: 14374 +filter out voxels: 1250 +First batch: fn: 0.0573, fp: 16.7102, label 0: tensor(67), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.282697468996048 and after 0.24108853936195374 +num_clicks 50 points_length: 15136 dynamic_size: 24 +filter out voxels: 14855 +filter out voxels: 1187 +First batch: fn: 0.0286, fp: 17.3093, label 0: tensor(76), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2819647192955017 and after 0.24514906108379364 +num_clicks 50 points_length: 14281 dynamic_size: 27 +filter out voxels: 14040 +filter out voxels: 1164 +First batch: fn: 0.0378, fp: 16.3207, label 0: tensor(69), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28159981966018677 and after 0.2434767186641693 +num_clicks 50 points_length: 14808 dynamic_size: 12 +filter out voxels: 14563 +filter out voxels: 1117 +First batch: fn: 0.0321, fp: 16.9301, label 0: tensor(72), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2830612361431122 and after 0.2467494010925293 +epoch: 4/20, iter: 23/42: loss:3.5471: rank:-1 +[22:47:33.396] epoch: 4/20, iter: 23/42: loss:3.5471: rank:-1 +num_clicks 50 points_length: 11571 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(350) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1736271232366562 and after 0.21508362889289856 +num_clicks 50 points_length: 12891 dynamic_size: 33 +filter out voxels: 92 +filter out voxels: 3 +First batch: fn: 0.5808, fp: 0.5333, label 0: tensor(512), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.198360875248909 and after 0.2704410254955292 +num_clicks 50 points_length: 13193 dynamic_size: 42 +filter out voxels: 87 +filter out voxels: 197 +First batch: fn: 0.3586, fp: 0.7816, label 0: tensor(531), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1957586258649826 and after 0.2819356620311737 +num_clicks 50 points_length: 15705 dynamic_size: 49 +filter out voxels: 221 +filter out voxels: 193 +First batch: fn: 0.1851, fp: 1.1722, label 0: tensor(544), label 1: tensor(348) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20414219796657562 and after 0.29597291350364685 +num_clicks 50 points_length: 15706 dynamic_size: 9 +filter out voxels: 320 +filter out voxels: 113 +First batch: fn: 0.1177, fp: 1.2397, label 0: tensor(508), label 1: tensor(184) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22351841628551483 and after 0.3268585801124573 +num_clicks 50 points_length: 14079 dynamic_size: 48 +filter out voxels: 270 +filter out voxels: 204 +First batch: fn: 0.0938, fp: 1.1230, label 0: tensor(545), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23104648292064667 and after 0.3403632342815399 +num_clicks 50 points_length: 13138 dynamic_size: 3 +filter out voxels: 192 +filter out voxels: 201 +First batch: fn: 0.0855, fp: 1.0500, label 0: tensor(503), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2325543314218521 and after 0.3520084321498871 +num_clicks 50 points_length: 13056 dynamic_size: 20 +filter out voxels: 217 +filter out voxels: 108 +First batch: fn: 0.0643, fp: 1.0640, label 0: tensor(519), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23490260541439056 and after 0.36020714044570923 +num_clicks 50 points_length: 12930 dynamic_size: 23 +filter out voxels: 236 +filter out voxels: 81 +First batch: fn: 0.0493, fp: 1.0681, label 0: tensor(522), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23785023391246796 and after 0.3708153963088989 +num_clicks 50 points_length: 11936 dynamic_size: 6 +filter out voxels: 167 +filter out voxels: 71 +First batch: fn: 0.0494, fp: 0.9821, label 0: tensor(506), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2426127940416336 and after 0.3782094120979309 +num_clicks 50 points_length: 11405 dynamic_size: 42 +filter out voxels: 131 +filter out voxels: 42 +First batch: fn: 0.0499, fp: 0.9358, label 0: tensor(538), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2409578114748001 and after 0.38040032982826233 +epoch: 4/20, iter: 24/42: loss:4.2757: rank:-1 +[22:47:57.076] epoch: 4/20, iter: 24/42: loss:4.2757: rank:-1 +num_clicks 50 points_length: 1968 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06650605797767639 and after 0.29704323410987854 +num_clicks 50 points_length: 2822 dynamic_size: 21 +filter out voxels: 2 +filter out voxels: 191 +First batch: fn: 0.8580, fp: 0.0009, label 0: tensor(2), label 1: tensor(467) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08160652220249176 and after 0.5917185544967651 +num_clicks 50 points_length: 1742 dynamic_size: 21 +filter out voxels: 2212 +filter out voxels: 6 +First batch: fn: 0.1113, fp: 1.1659, label 0: tensor(291), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32825422286987305 and after 0.726944625377655 +num_clicks 50 points_length: 1041 dynamic_size: 10 +filter out voxels: 217 +filter out voxels: 4 +First batch: fn: 0.0098, fp: 0.8967, label 0: tensor(306), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37885069847106934 and after 0.7623669505119324 +num_clicks 50 points_length: 910 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 4 +First batch: fn: 0.0029, fp: 0.7687, label 0: tensor(256), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44820356369018555 and after 0.7565639019012451 +num_clicks 50 points_length: 995 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.0002, fp: 0.7729, label 0: tensor(196), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48698893189430237 and after 0.7723408937454224 +num_clicks 50 points_length: 963 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.0004, fp: 0.6750, label 0: tensor(235), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4974979758262634 and after 0.783869743347168 +num_clicks 50 points_length: 931 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.0020, fp: 0.6102, label 0: tensor(273), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4842613637447357 and after 0.7966746091842651 +num_clicks 50 points_length: 847 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.0013, fp: 0.5741, label 0: tensor(264), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48831456899642944 and after 0.8036350011825562 +num_clicks 50 points_length: 829 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.0022, fp: 0.5372, label 0: tensor(292), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47108450531959534 and after 0.8175604343414307 +num_clicks 50 points_length: 745 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.0031, fp: 0.4929, label 0: tensor(216), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.467049241065979 and after 0.8275230526924133 +epoch: 4/20, iter: 25/42: loss:2.2935: rank:-1 +[22:48:09.715] epoch: 4/20, iter: 25/42: loss:2.2935: rank:-1 +num_clicks 50 points_length: 1525 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1672566831111908 and after 0.4510721266269684 +num_clicks 50 points_length: 2598 dynamic_size: 37 +filter out voxels: 5602 +filter out voxels: 1389 +First batch: fn: 0.2623, fp: 4.3810, label 0: tensor(234), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2592911720275879 and after 0.49408388137817383 +num_clicks 50 points_length: 3228 dynamic_size: 26 +filter out voxels: 4062 +filter out voxels: 1395 +First batch: fn: 0.1954, fp: 3.4282, label 0: tensor(243), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3916826844215393 and after 0.5730489492416382 +num_clicks 50 points_length: 1588 dynamic_size: 25 +filter out voxels: 3875 +filter out voxels: 415 +First batch: fn: 0.0984, fp: 3.4833, label 0: tensor(271), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4530499279499054 and after 0.6137630939483643 +num_clicks 50 points_length: 1134 dynamic_size: 49 +filter out voxels: 3484 +filter out voxels: 20 +First batch: fn: 0.1010, fp: 2.9974, label 0: tensor(186), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4801573157310486 and after 0.627079427242279 +num_clicks 50 points_length: 1016 dynamic_size: 26 +filter out voxels: 3151 +filter out voxels: 0 +First batch: fn: 0.1089, fp: 2.7895, label 0: tensor(197), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48221516609191895 and after 0.632757306098938 +num_clicks 50 points_length: 942 dynamic_size: 12 +filter out voxels: 3129 +filter out voxels: 0 +First batch: fn: 0.1043, fp: 2.7731, label 0: tensor(176), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.484973669052124 and after 0.64467453956604 +num_clicks 50 points_length: 834 dynamic_size: 35 +filter out voxels: 3054 +filter out voxels: 0 +First batch: fn: 0.1023, fp: 2.6315, label 0: tensor(191), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48381051421165466 and after 0.6474521160125732 +num_clicks 50 points_length: 809 dynamic_size: 7 +filter out voxels: 3038 +filter out voxels: 0 +First batch: fn: 0.1016, fp: 2.6007, label 0: tensor(154), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4801269769668579 and after 0.6501669883728027 +num_clicks 50 points_length: 808 dynamic_size: 28 +filter out voxels: 3055 +filter out voxels: 0 +First batch: fn: 0.1141, fp: 2.4925, label 0: tensor(187), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4778519570827484 and after 0.6513339877128601 +num_clicks 50 points_length: 759 dynamic_size: 50 +filter out voxels: 3139 +filter out voxels: 0 +First batch: fn: 0.1154, fp: 2.5161, label 0: tensor(229), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47844555974006653 and after 0.6601568460464478 +epoch: 4/20, iter: 26/42: loss:2.2628: rank:-1 +[22:48:21.314] epoch: 4/20, iter: 26/42: loss:2.2628: rank:-1 +num_clicks 50 points_length: 43955 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(550) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45738717913627625 and after 0.5026105642318726 +num_clicks 50 points_length: 15649 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 424 +First batch: fn: 0.3097, fp: 0.0463, label 0: tensor(287), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5154716968536377 and after 0.6015241742134094 +num_clicks 50 points_length: 10032 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 818 +First batch: fn: 0.1476, fp: 0.0807, label 0: tensor(517), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5474833250045776 and after 0.6528595089912415 +num_clicks 50 points_length: 8741 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 1242 +First batch: fn: 0.0944, fp: 0.1044, label 0: tensor(509), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5756087303161621 and after 0.6837579011917114 +num_clicks 50 points_length: 8643 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 1317 +First batch: fn: 0.0470, fp: 0.1497, label 0: tensor(511), label 1: tensor(496) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6078066825866699 and after 0.7074422836303711 +num_clicks 50 points_length: 9993 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 1329 +First batch: fn: 0.0162, fp: 0.2112, label 0: tensor(542), label 1: tensor(200) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6346860527992249 and after 0.7363448143005371 +num_clicks 50 points_length: 8399 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 1469 +First batch: fn: 0.0166, fp: 0.1745, label 0: tensor(542), label 1: tensor(232) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6546193361282349 and after 0.7612977027893066 +num_clicks 50 points_length: 8620 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 1288 +First batch: fn: 0.0100, fp: 0.1861, label 0: tensor(545), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.677920937538147 and after 0.7919090390205383 +num_clicks 50 points_length: 8317 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 996 +First batch: fn: 0.0097, fp: 0.1795, label 0: tensor(547), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6874575614929199 and after 0.8062447309494019 +num_clicks 50 points_length: 7695 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 722 +First batch: fn: 0.0094, fp: 0.1657, label 0: tensor(525), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6957455277442932 and after 0.8226334452629089 +num_clicks 50 points_length: 7267 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 657 +First batch: fn: 0.0111, fp: 0.1543, label 0: tensor(508), label 1: tensor(203) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7042805552482605 and after 0.8341883420944214 +epoch: 4/20, iter: 27/42: loss:2.1958: rank:-1 +[22:48:44.244] epoch: 4/20, iter: 27/42: loss:2.1958: rank:-1 +num_clicks 50 points_length: 8276 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4265225827693939 and after 0.5753871202468872 +num_clicks 50 points_length: 6719 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 192 +First batch: fn: 0.6119, fp: 0.2000, label 0: tensor(136), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6689735054969788 and after 0.7543240189552307 +num_clicks 50 points_length: 6251 dynamic_size: 11 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.2951, fp: 0.4602, label 0: tensor(454), label 1: tensor(434) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6968271732330322 and after 0.7907611727714539 +num_clicks 50 points_length: 5349 dynamic_size: 12 +filter out voxels: 22 +filter out voxels: 0 +First batch: fn: 0.2247, fp: 0.4216, label 0: tensor(507), label 1: tensor(389) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6754911541938782 and after 0.8226604461669922 +num_clicks 50 points_length: 4542 dynamic_size: 23 +filter out voxels: 20 +filter out voxels: 0 +First batch: fn: 0.1696, fp: 0.3792, label 0: tensor(512), label 1: tensor(307) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6526424288749695 and after 0.844798743724823 +num_clicks 50 points_length: 3879 dynamic_size: 46 +filter out voxels: 16 +filter out voxels: 0 +First batch: fn: 0.1509, fp: 0.3178, label 0: tensor(553), label 1: tensor(412) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6598142981529236 and after 0.8545107245445251 +num_clicks 50 points_length: 3998 dynamic_size: 4 +filter out voxels: 18 +filter out voxels: 0 +First batch: fn: 0.1178, fp: 0.3653, label 0: tensor(503), label 1: tensor(288) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6548455357551575 and after 0.8612684011459351 +num_clicks 50 points_length: 3683 dynamic_size: 16 +filter out voxels: 18 +filter out voxels: 0 +First batch: fn: 0.1156, fp: 0.3294, label 0: tensor(378), label 1: tensor(384) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6746447086334229 and after 0.8623052835464478 +num_clicks 50 points_length: 4088 dynamic_size: 19 +filter out voxels: 27 +filter out voxels: 0 +First batch: fn: 0.0801, fp: 0.4138, label 0: tensor(517), label 1: tensor(255) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6401870250701904 and after 0.8741340637207031 +num_clicks 50 points_length: 3446 dynamic_size: 22 +filter out voxels: 17 +filter out voxels: 0 +First batch: fn: 0.1066, fp: 0.3098, label 0: tensor(478), label 1: tensor(316) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6493163108825684 and after 0.8756548166275024 +num_clicks 50 points_length: 3473 dynamic_size: 30 +filter out voxels: 19 +filter out voxels: 0 +First batch: fn: 0.0950, fp: 0.3247, label 0: tensor(525), label 1: tensor(261) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6368706822395325 and after 0.8790850043296814 +epoch: 4/20, iter: 28/42: loss:1.8897: rank:-1 +[22:49:05.893] epoch: 4/20, iter: 28/42: loss:1.8897: rank:-1 +num_clicks 50 points_length: 10674 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(225) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5656787753105164 and after 0.5811735391616821 +num_clicks 50 points_length: 8533 dynamic_size: 34 +filter out voxels: 1946 +filter out voxels: 176 +First batch: fn: 0.2505, fp: 0.5489, label 0: tensor(314), label 1: tensor(390) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6918782591819763 and after 0.7061972618103027 +num_clicks 50 points_length: 8769 dynamic_size: 6 +filter out voxels: 423 +filter out voxels: 8 +First batch: fn: 0.0284, fp: 0.7931, label 0: tensor(506), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.738183856010437 and after 0.7515712976455688 +num_clicks 50 points_length: 7627 dynamic_size: 49 +filter out voxels: 41 +filter out voxels: 2 +First batch: fn: 0.0078, fp: 0.7068, label 0: tensor(548), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7579299211502075 and after 0.7992250919342041 +num_clicks 50 points_length: 6138 dynamic_size: 29 +filter out voxels: 2 +filter out voxels: 2 +First batch: fn: 0.0088, fp: 0.5662, label 0: tensor(529), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7516226768493652 and after 0.8197433948516846 +num_clicks 50 points_length: 5964 dynamic_size: 11 +filter out voxels: 3 +filter out voxels: 1 +First batch: fn: 0.0046, fp: 0.5542, label 0: tensor(511), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7664401531219482 and after 0.8362228870391846 +num_clicks 50 points_length: 4974 dynamic_size: 41 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.0111, fp: 0.4548, label 0: tensor(538), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.755550742149353 and after 0.8575115203857422 +num_clicks 50 points_length: 4916 dynamic_size: 14 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.0096, fp: 0.4510, label 0: tensor(514), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7552832365036011 and after 0.8687776327133179 +num_clicks 50 points_length: 4338 dynamic_size: 48 +filter out voxels: 3 +filter out voxels: 0 +First batch: fn: 0.0098, fp: 0.3966, label 0: tensor(546), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7364934682846069 and after 0.8778818249702454 +num_clicks 50 points_length: 4219 dynamic_size: 21 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.0084, fp: 0.3868, label 0: tensor(493), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7486405968666077 and after 0.8878747224807739 +num_clicks 50 points_length: 3479 dynamic_size: 33 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.0125, fp: 0.3135, label 0: tensor(532), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7355610728263855 and after 0.8963301181793213 +epoch: 4/20, iter: 29/42: loss:1.5163: rank:-1 +[22:49:22.971] epoch: 4/20, iter: 29/42: loss:1.5163: rank:-1 +num_clicks 50 points_length: 348 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34302470088005066 and after 0.4517858624458313 +num_clicks 50 points_length: 4354 dynamic_size: 21 +filter out voxels: 3725 +filter out voxels: 529 +First batch: fn: 0.0029, fp: 12.5086, label 0: tensor(119), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3785308599472046 and after 0.512413501739502 +num_clicks 50 points_length: 1743 dynamic_size: 1 +filter out voxels: 1501 +filter out voxels: 300 +First batch: fn: 0.0690, fp: 4.9397, label 0: tensor(45), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3985940217971802 and after 0.5688478946685791 +num_clicks 50 points_length: 1041 dynamic_size: 7 +filter out voxels: 808 +filter out voxels: 273 +First batch: fn: 0.0230, fp: 2.9684, label 0: tensor(60), label 1: tensor(4) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4130741357803345 and after 0.6021168828010559 +num_clicks 50 points_length: 780 dynamic_size: 20 +filter out voxels: 588 +filter out voxels: 126 +First batch: fn: 0.0603, fp: 2.1810, label 0: tensor(85), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42080265283584595 and after 0.6063221096992493 +num_clicks 50 points_length: 740 dynamic_size: 17 +filter out voxels: 566 +filter out voxels: 56 +First batch: fn: 0.0632, fp: 2.0632, label 0: tensor(61), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4201241135597229 and after 0.6057285666465759 +num_clicks 50 points_length: 752 dynamic_size: 13 +filter out voxels: 576 +filter out voxels: 52 +First batch: fn: 0.0690, fp: 2.0920, label 0: tensor(63), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4713020324707031 and after 0.6396564245223999 +num_clicks 50 points_length: 721 dynamic_size: 2 +filter out voxels: 557 +filter out voxels: 28 +First batch: fn: 0.0776, fp: 1.9943, label 0: tensor(46), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4034159779548645 and after 0.593184769153595 +num_clicks 50 points_length: 793 dynamic_size: 10 +filter out voxels: 620 +filter out voxels: 103 +First batch: fn: 0.0718, fp: 2.2069, label 0: tensor(59), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45279622077941895 and after 0.6197389364242554 +num_clicks 50 points_length: 766 dynamic_size: 12 +filter out voxels: 600 +filter out voxels: 8 +First batch: fn: 0.0718, fp: 2.1293, label 0: tensor(80), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46589499711990356 and after 0.6365140676498413 +num_clicks 50 points_length: 706 dynamic_size: 3 +filter out voxels: 559 +filter out voxels: 20 +First batch: fn: 0.0776, fp: 1.9511, label 0: tensor(39), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4135361909866333 and after 0.5898734331130981 +epoch: 4/20, iter: 30/42: loss:2.4607: rank:-1 +[22:49:32.707] epoch: 4/20, iter: 30/42: loss:2.4607: rank:-1 +num_clicks 50 points_length: 1046 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.262898325920105 and after 0.17350290715694427 +num_clicks 50 points_length: 3920 dynamic_size: 13 +filter out voxels: 2654 +filter out voxels: 166 +First batch: fn: 0.5507, fp: 3.1969, label 0: tensor(146), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26807019114494324 and after 0.4109165072441101 +num_clicks 50 points_length: 5316 dynamic_size: 12 +filter out voxels: 2999 +filter out voxels: 45 +First batch: fn: 0.0239, fp: 5.0583, label 0: tensor(384), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3515569567680359 and after 0.5350384712219238 +num_clicks 50 points_length: 2985 dynamic_size: 41 +filter out voxels: 1692 +filter out voxels: 43 +First batch: fn: 0.0382, fp: 2.8155, label 0: tensor(384), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3437269926071167 and after 0.5666627883911133 +num_clicks 50 points_length: 2630 dynamic_size: 26 +filter out voxels: 1701 +filter out voxels: 21 +First batch: fn: 0.0449, fp: 2.4694, label 0: tensor(190), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32845592498779297 and after 0.5841972827911377 +num_clicks 50 points_length: 2555 dynamic_size: 47 +filter out voxels: 1864 +filter out voxels: 0 +First batch: fn: 0.0411, fp: 2.4015, label 0: tensor(197), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3601688742637634 and after 0.6075328588485718 +num_clicks 50 points_length: 2411 dynamic_size: 11 +filter out voxels: 1759 +filter out voxels: 0 +First batch: fn: 0.0287, fp: 2.2763, label 0: tensor(78), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31133949756622314 and after 0.5856921076774597 +num_clicks 50 points_length: 2589 dynamic_size: 25 +filter out voxels: 1924 +filter out voxels: 0 +First batch: fn: 0.0277, fp: 2.4474, label 0: tensor(178), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3157680332660675 and after 0.6132789850234985 +num_clicks 50 points_length: 2160 dynamic_size: 23 +filter out voxels: 1610 +filter out voxels: 0 +First batch: fn: 0.0325, fp: 2.0325, label 0: tensor(137), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3725282847881317 and after 0.6200550198554993 +num_clicks 50 points_length: 2413 dynamic_size: 38 +filter out voxels: 1807 +filter out voxels: 0 +First batch: fn: 0.0258, fp: 2.2811, label 0: tensor(136), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36476314067840576 and after 0.630185067653656 +num_clicks 50 points_length: 2185 dynamic_size: 1 +filter out voxels: 1632 +filter out voxels: 0 +First batch: fn: 0.0268, fp: 2.0621, label 0: tensor(145), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35652920603752136 and after 0.6385548114776611 +epoch: 4/20, iter: 31/42: loss:2.5995: rank:-1 +[22:49:44.625] epoch: 4/20, iter: 31/42: loss:2.5995: rank:-1 +num_clicks 50 points_length: 4539 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(177) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.004614762496203184 and after 0.20078930258750916 +num_clicks 50 points_length: 4120 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 43 +First batch: fn: 0.9513, fp: 0.1532, label 0: tensor(63), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.10897140949964523 and after 0.6342422962188721 +num_clicks 50 points_length: 3984 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 5 +First batch: fn: 0.5280, fp: 0.0510, label 0: tensor(1), label 1: tensor(455) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2963191866874695 and after 0.7096865177154541 +num_clicks 50 points_length: 3292 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2812, fp: 0.2890, label 0: tensor(8), label 1: tensor(424) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2905888557434082 and after 0.7352969646453857 +num_clicks 50 points_length: 2985 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1159, fp: 0.4850, label 0: tensor(168), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35553768277168274 and after 0.7710962891578674 +num_clicks 50 points_length: 2705 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0944, fp: 0.3699, label 0: tensor(62), label 1: tensor(237) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33941787481307983 and after 0.7739836573600769 +num_clicks 50 points_length: 2591 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0513, fp: 0.4458, label 0: tensor(383), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3592883348464966 and after 0.7952447533607483 +num_clicks 50 points_length: 2306 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0467, fp: 0.3994, label 0: tensor(274), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36361315846443176 and after 0.807370662689209 +num_clicks 50 points_length: 2143 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0404, fp: 0.3775, label 0: tensor(195), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.365217387676239 and after 0.8038809299468994 +num_clicks 50 points_length: 2222 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0324, fp: 0.4013, label 0: tensor(259), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36675092577934265 and after 0.8096474409103394 +num_clicks 50 points_length: 2059 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0353, fp: 0.3871, label 0: tensor(392), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36622291803359985 and after 0.8249588012695312 +epoch: 4/20, iter: 32/42: loss:2.7958: rank:-1 +[22:49:58.992] epoch: 4/20, iter: 32/42: loss:2.7958: rank:-1 +num_clicks 50 points_length: 1254 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40868979692459106 and after 0.6657102108001709 +num_clicks 50 points_length: 969 dynamic_size: 17 +filter out voxels: 9 +filter out voxels: 36 +First batch: fn: 0.5020, fp: 0.1101, label 0: tensor(2), label 1: tensor(166) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6242837905883789 and after 0.6611505150794983 +num_clicks 50 points_length: 923 dynamic_size: 3 +filter out voxels: 12 +filter out voxels: 0 +First batch: fn: 0.4098, fp: 0.4006, label 0: tensor(2), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5583340525627136 and after 0.6897925138473511 +num_clicks 50 points_length: 577 dynamic_size: 39 +filter out voxels: 12 +filter out voxels: 0 +First batch: fn: 0.2767, fp: 0.8023, label 0: tensor(32), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5535489320755005 and after 0.7310678958892822 +num_clicks 50 points_length: 454 dynamic_size: 11 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.1899, fp: 0.7901, label 0: tensor(18), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.541942834854126 and after 0.7560429573059082 +num_clicks 50 points_length: 391 dynamic_size: 45 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.0937, fp: 0.8649, label 0: tensor(126), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6308766603469849 and after 0.8081376552581787 +num_clicks 50 points_length: 337 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0816, fp: 0.5495, label 0: tensor(91), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6288332939147949 and after 0.810467004776001 +num_clicks 50 points_length: 366 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 3 +First batch: fn: 0.0576, fp: 0.5501, label 0: tensor(143), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6545635461807251 and after 0.8246098160743713 +num_clicks 50 points_length: 361 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 5 +First batch: fn: 0.0549, fp: 0.4736, label 0: tensor(38), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6462540626525879 and after 0.8130785226821899 +num_clicks 50 points_length: 340 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 6 +First batch: fn: 0.0308, fp: 0.6060, label 0: tensor(112), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6652116775512695 and after 0.8283193707466125 +num_clicks 50 points_length: 368 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 13 +First batch: fn: 0.0394, fp: 0.4686, label 0: tensor(124), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6955260038375854 and after 0.8326020240783691 +epoch: 4/20, iter: 33/42: loss:1.7693: rank:-1 +[22:50:09.748] epoch: 4/20, iter: 33/42: loss:1.7693: rank:-1 +num_clicks 50 points_length: 47242 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23286466300487518 and after 0.11737676709890366 +num_clicks 50 points_length: 42505 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9826, fp: 0.0003, label 0: tensor(25), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3837398886680603 and after 0.2676898241043091 +num_clicks 50 points_length: 32682 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9729, fp: 0.0002, label 0: tensor(27), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4219193458557129 and after 0.3475342392921448 +num_clicks 50 points_length: 26480 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9617, fp: 0.0002, label 0: tensor(21), label 1: tensor(534) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4804325997829437 and after 0.390241414308548 +num_clicks 50 points_length: 23202 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9536, fp: 0.0001, label 0: tensor(39), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5091333389282227 and after 0.4277389943599701 +num_clicks 50 points_length: 20251 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9408, fp: 0.0004, label 0: tensor(65), label 1: tensor(550) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.513137698173523 and after 0.4485030770301819 +num_clicks 50 points_length: 18449 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 12 +First batch: fn: 0.9353, fp: 0.0001, label 0: tensor(27), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5183495283126831 and after 0.475582093000412 +num_clicks 50 points_length: 16173 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 16 +First batch: fn: 0.9241, fp: 0.0001, label 0: tensor(39), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.522805392742157 and after 0.4867219924926758 +num_clicks 50 points_length: 14908 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 72 +First batch: fn: 0.9226, fp: 0.0001, label 0: tensor(23), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5238140821456909 and after 0.5062434077262878 +num_clicks 50 points_length: 13403 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 85 +First batch: fn: 0.9125, fp: 0.0001, label 0: tensor(13), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.541084349155426 and after 0.5296856760978699 +num_clicks 50 points_length: 11737 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 90 +First batch: fn: 0.8973, fp: 0.0005, label 0: tensor(68), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5532562136650085 and after 0.5377343893051147 +epoch: 4/20, iter: 34/42: loss:2.9598: rank:-1 +[22:50:32.269] epoch: 4/20, iter: 34/42: loss:2.9598: rank:-1 +num_clicks 50 points_length: 701 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07392559945583344 and after 0.5241420865058899 +num_clicks 50 points_length: 777 dynamic_size: 22 +filter out voxels: 67 +filter out voxels: 450 +First batch: fn: 0.4993, fp: 0.6091, label 0: tensor(63), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5106659531593323 and after 0.6351131200790405 +num_clicks 50 points_length: 708 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.2525, fp: 0.7575, label 0: tensor(108), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4115612804889679 and after 0.6602996587753296 +num_clicks 50 points_length: 616 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2183, fp: 0.6605, label 0: tensor(82), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4249434769153595 and after 0.6663790941238403 +num_clicks 50 points_length: 756 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0913, fp: 0.9872, label 0: tensor(152), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3035643696784973 and after 0.7182880640029907 +num_clicks 50 points_length: 491 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1755, fp: 0.5250, label 0: tensor(99), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2449800819158554 and after 0.7510607838630676 +num_clicks 50 points_length: 401 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1612, fp: 0.4108, label 0: tensor(78), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2653598189353943 and after 0.7645494937896729 +num_clicks 50 points_length: 377 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1783, fp: 0.3595, label 0: tensor(86), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2713635265827179 and after 0.7753884792327881 +num_clicks 50 points_length: 377 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1412, fp: 0.3966, label 0: tensor(82), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2383657842874527 and after 0.7745281457901001 +num_clicks 50 points_length: 436 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0942, fp: 0.5278, label 0: tensor(97), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32529526948928833 and after 0.7811786532402039 +num_clicks 50 points_length: 397 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0827, fp: 0.4836, label 0: tensor(104), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18478718400001526 and after 0.8120602369308472 +epoch: 4/20, iter: 35/42: loss:2.4863: rank:-1 +[22:50:41.823] epoch: 4/20, iter: 35/42: loss:2.4863: rank:-1 +num_clicks 50 points_length: 1312 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23447568714618683 and after 0.1983453631401062 +num_clicks 50 points_length: 1361 dynamic_size: 37 +filter out voxels: 8 +filter out voxels: 0 +First batch: fn: 0.9848, fp: 0.0003, label 0: tensor(0), label 1: tensor(313) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.027337150648236275 and after 0.23930756747722626 +num_clicks 50 points_length: 1423 dynamic_size: 15 +filter out voxels: 6 +filter out voxels: 0 +First batch: fn: 0.9747, fp: 0.0002, label 0: tensor(0), label 1: tensor(285) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.017599033191800117 and after 0.4083811044692993 +num_clicks 50 points_length: 978 dynamic_size: 48 +filter out voxels: 5 +filter out voxels: 0 +First batch: fn: 0.8963, fp: 0.0023, label 0: tensor(1), label 1: tensor(272) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34138062596321106 and after 0.4758397936820984 +num_clicks 50 points_length: 1140 dynamic_size: 4 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.8275, fp: 0.0061, label 0: tensor(0), label 1: tensor(266) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.454306423664093 and after 0.5657670497894287 +num_clicks 50 points_length: 741 dynamic_size: 27 +filter out voxels: 1 +filter out voxels: 0 +First batch: fn: 0.7690, fp: 0.0065, label 0: tensor(1), label 1: tensor(232) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4273480772972107 and after 0.6314979791641235 +num_clicks 50 points_length: 757 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6635, fp: 0.0070, label 0: tensor(0), label 1: tensor(233) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4853496253490448 and after 0.6864152550697327 +num_clicks 50 points_length: 680 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5769, fp: 0.0149, label 0: tensor(2), label 1: tensor(232) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4121530055999756 and after 0.7243668437004089 +num_clicks 50 points_length: 559 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5213, fp: 0.0194, label 0: tensor(1), label 1: tensor(232) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5034412145614624 and after 0.7458604574203491 +num_clicks 50 points_length: 574 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4744, fp: 0.0204, label 0: tensor(0), label 1: tensor(184) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41671091318130493 and after 0.7786933183670044 +num_clicks 50 points_length: 459 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4248, fp: 0.0206, label 0: tensor(2), label 1: tensor(228) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4172452986240387 and after 0.8051065802574158 +epoch: 4/20, iter: 36/42: loss:2.4962: rank:-1 +[22:50:54.200] epoch: 4/20, iter: 36/42: loss:2.4962: rank:-1 +num_clicks 50 points_length: 26430 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6562005281448364 and after 0.17628967761993408 +num_clicks 50 points_length: 22991 dynamic_size: 46 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.8646, fp: 0.0053, label 0: tensor(14), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6259191036224365 and after 0.41419896483421326 +num_clicks 50 points_length: 15573 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5762, fp: 0.0131, label 0: tensor(44), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6872711181640625 and after 0.5452691316604614 +num_clicks 50 points_length: 11541 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3994, fp: 0.0372, label 0: tensor(187), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7324256896972656 and after 0.6480844020843506 +num_clicks 50 points_length: 9212 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2428, fp: 0.1058, label 0: tensor(243), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7755533456802368 and after 0.7228050231933594 +num_clicks 50 points_length: 7145 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1403, fp: 0.1300, label 0: tensor(341), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8073169589042664 and after 0.7822141647338867 +num_clicks 50 points_length: 6480 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0771, fp: 0.1681, label 0: tensor(394), label 1: tensor(442) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8249015808105469 and after 0.8264255523681641 +num_clicks 50 points_length: 6054 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0333, fp: 0.1958, label 0: tensor(504), label 1: tensor(245) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8447571992874146 and after 0.855685293674469 +num_clicks 50 points_length: 5475 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0255, fp: 0.1816, label 0: tensor(528), label 1: tensor(252) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8428059816360474 and after 0.8750201463699341 +num_clicks 50 points_length: 5064 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0112, fp: 0.1804, label 0: tensor(524), label 1: tensor(138) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8477715253829956 and after 0.8941937685012817 +num_clicks 50 points_length: 4624 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0131, fp: 0.1618, label 0: tensor(539), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.849405825138092 and after 0.9043312072753906 +epoch: 4/20, iter: 37/42: loss:1.5843: rank:-1 +[22:51:14.068] epoch: 4/20, iter: 37/42: loss:1.5843: rank:-1 +num_clicks 50 points_length: 3412 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(245) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5253682136535645 and after 0.358045369386673 +num_clicks 50 points_length: 1991 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 14 +First batch: fn: 0.9897, fp: 0.0000, label 0: tensor(0), label 1: tensor(344) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5448951125144958 and after 0.4127243459224701 +num_clicks 50 points_length: 1650 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9791, fp: 0.0004, label 0: tensor(0), label 1: tensor(382) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6240931153297424 and after 0.44620877504348755 +num_clicks 50 points_length: 1926 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9345, fp: 0.0018, label 0: tensor(0), label 1: tensor(370) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6127457618713379 and after 0.47967857122421265 +num_clicks 50 points_length: 1874 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9021, fp: 0.0026, label 0: tensor(0), label 1: tensor(371) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6131771206855774 and after 0.5173600912094116 +num_clicks 50 points_length: 1357 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8862, fp: 0.0024, label 0: tensor(0), label 1: tensor(326) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6565673351287842 and after 0.551261842250824 +num_clicks 50 points_length: 912 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8727, fp: 0.0029, label 0: tensor(2), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6503645181655884 and after 0.5628018379211426 +num_clicks 50 points_length: 917 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8584, fp: 0.0027, label 0: tensor(0), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6363791823387146 and after 0.5663222074508667 +num_clicks 50 points_length: 902 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8551, fp: 0.0030, label 0: tensor(0), label 1: tensor(227) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6447569131851196 and after 0.5833793878555298 +num_clicks 50 points_length: 843 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8362, fp: 0.0026, label 0: tensor(0), label 1: tensor(216) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6941325664520264 and after 0.5873625874519348 +num_clicks 50 points_length: 777 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8359, fp: 0.0044, label 0: tensor(1), label 1: tensor(203) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6495622992515564 and after 0.5901327133178711 +epoch: 4/20, iter: 38/42: loss:1.9649: rank:-1 +[22:51:29.812] epoch: 4/20, iter: 38/42: loss:1.9649: rank:-1 +num_clicks 50 points_length: 4472 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6667112112045288 and after 0.46121567487716675 +num_clicks 50 points_length: 3600 dynamic_size: 39 +filter out voxels: 100 +filter out voxels: 3 +First batch: fn: 0.6153, fp: 0.0436, label 0: tensor(30), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6521856188774109 and after 0.7792249917984009 +num_clicks 50 points_length: 2429 dynamic_size: 43 +filter out voxels: 52 +filter out voxels: 2 +First batch: fn: 0.0749, fp: 0.2956, label 0: tensor(517), label 1: tensor(183) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.71185302734375 and after 0.8321582674980164 +num_clicks 50 points_length: 1944 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0293, fp: 0.2831, label 0: tensor(245), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7271953821182251 and after 0.8424122333526611 +num_clicks 50 points_length: 1894 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0122, fp: 0.2767, label 0: tensor(315), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.729171633720398 and after 0.8594332933425903 +num_clicks 50 points_length: 1477 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0214, fp: 0.2039, label 0: tensor(276), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7361220121383667 and after 0.8664848208427429 +num_clicks 50 points_length: 1308 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0258, fp: 0.1737, label 0: tensor(159), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7238708734512329 and after 0.8688056468963623 +num_clicks 50 points_length: 1271 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0256, fp: 0.1682, label 0: tensor(225), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7297183275222778 and after 0.8727192878723145 +num_clicks 50 points_length: 1230 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0265, fp: 0.1611, label 0: tensor(187), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7108768224716187 and after 0.876367449760437 +num_clicks 50 points_length: 1186 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0247, fp: 0.1562, label 0: tensor(203), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.727717399597168 and after 0.8759833574295044 +num_clicks 50 points_length: 1153 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0227, fp: 0.1531, label 0: tensor(253), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7371238470077515 and after 0.8771184682846069 +epoch: 4/20, iter: 39/42: loss:1.2162: rank:-1 +[22:51:43.918] epoch: 4/20, iter: 39/42: loss:1.2162: rank:-1 +num_clicks 50 points_length: 200 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13563640415668488 and after 0.03368420898914337 +num_clicks 50 points_length: 443 dynamic_size: 36 +filter out voxels: 235 +filter out voxels: 84 +First batch: fn: 1.0000, fp: 0.0475, label 0: tensor(4), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41929829120635986 and after 0.4431305527687073 +num_clicks 50 points_length: 145 dynamic_size: 21 +filter out voxels: 153 +filter out voxels: 0 +First batch: fn: 0.8747, fp: 0.0643, label 0: tensor(2), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43682172894477844 and after 0.5095855593681335 +num_clicks 50 points_length: 117 dynamic_size: 10 +filter out voxels: 146 +filter out voxels: 0 +First batch: fn: 0.8125, fp: 0.0969, label 0: tensor(2), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.50774085521698 and after 0.5175354480743408 +num_clicks 50 points_length: 120 dynamic_size: 39 +filter out voxels: 106 +filter out voxels: 0 +First batch: fn: 0.8023, fp: 0.1178, label 0: tensor(6), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48699891567230225 and after 0.5599690079689026 +num_clicks 50 points_length: 95 dynamic_size: 12 +filter out voxels: 71 +filter out voxels: 0 +First batch: fn: 0.7319, fp: 0.1790, label 0: tensor(4), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5688960552215576 and after 0.5351338386535645 +num_clicks 50 points_length: 121 dynamic_size: 23 +filter out voxels: 77 +filter out voxels: 0 +First batch: fn: 0.7527, fp: 0.1670, label 0: tensor(5), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5496132373809814 and after 0.5941480994224548 +num_clicks 50 points_length: 99 dynamic_size: 31 +filter out voxels: 70 +filter out voxels: 0 +First batch: fn: 0.6828, fp: 0.1322, label 0: tensor(10), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5822082757949829 and after 0.6300284266471863 +num_clicks 50 points_length: 112 dynamic_size: 8 +filter out voxels: 48 +filter out voxels: 0 +First batch: fn: 0.5853, fp: 0.1749, label 0: tensor(1), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5459647178649902 and after 0.6684474945068359 +num_clicks 50 points_length: 91 dynamic_size: 7 +filter out voxels: 86 +filter out voxels: 0 +First batch: fn: 0.5104, fp: 0.2293, label 0: tensor(2), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.56574547290802 and after 0.6727458238601685 +num_clicks 50 points_length: 110 dynamic_size: 37 +filter out voxels: 69 +filter out voxels: 0 +First batch: fn: 0.4373, fp: 0.2940, label 0: tensor(10), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5613902807235718 and after 0.7349034547805786 +epoch: 4/20, iter: 40/42: loss:2.4444: rank:-1 +[22:51:52.883] epoch: 4/20, iter: 40/42: loss:2.4444: rank:-1 +num_clicks 50 points_length: 14462 dynamic_size: 29 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6893601417541504 and after 0.6094821095466614 +num_clicks 50 points_length: 8204 dynamic_size: 1 +filter out voxels: 78 +First batch: fn: 0.5573, fp: 0.0100, label 0: tensor(26), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8451153635978699 and after 0.8155309557914734 +num_clicks 50 points_length: 4713 dynamic_size: 35 +filter out voxels: 86 +First batch: fn: 0.2796, fp: 0.0463, label 0: tensor(199), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8802214860916138 and after 0.8751667737960815 +num_clicks 50 points_length: 3649 dynamic_size: 11 +filter out voxels: 6 +First batch: fn: 0.1155, fp: 0.1368, label 0: tensor(350), label 1: tensor(364) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8826968669891357 and after 0.9084318280220032 +num_clicks 50 points_length: 2804 dynamic_size: 18 +filter out voxels: 0 +First batch: fn: 0.0382, fp: 0.1556, label 0: tensor(396), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8608698844909668 and after 0.9175639152526855 +num_clicks 50 points_length: 2542 dynamic_size: 19 +filter out voxels: 0 +First batch: fn: 0.0218, fp: 0.1540, label 0: tensor(423), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8578755855560303 and after 0.9272834062576294 +num_clicks 50 points_length: 2226 dynamic_size: 24 +filter out voxels: 0 +First batch: fn: 0.0186, fp: 0.1353, label 0: tensor(278), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8561530709266663 and after 0.9294071793556213 +num_clicks 50 points_length: 2160 dynamic_size: 15 +filter out voxels: 0 +First batch: fn: 0.0168, fp: 0.1326, label 0: tensor(372), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8557271361351013 and after 0.9346498250961304 +num_clicks 50 points_length: 1979 dynamic_size: 43 +filter out voxels: 0 +First batch: fn: 0.0214, fp: 0.1154, label 0: tensor(357), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8569009304046631 and after 0.9378440976142883 +num_clicks 50 points_length: 1874 dynamic_size: 36 +filter out voxels: 0 +First batch: fn: 0.0224, fp: 0.1072, label 0: tensor(361), label 1: tensor(138) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.864355742931366 and after 0.9404682517051697 +num_clicks 50 points_length: 1790 dynamic_size: 31 +filter out voxels: 0 +First batch: fn: 0.0223, fp: 0.1014, label 0: tensor(296), label 1: tensor(158) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8719048500061035 and after 0.9400796294212341 +epoch: 4/20, iter: 41/42: loss:0.887: rank:-1 +[22:52:01.445] epoch: 4/20, iter: 41/42: loss:0.887: rank:-1 +current lr: 3.968320000000001e-05 +[22:52:01.446] - Train metrics: 2.6404898 +found empty patch +found empty patch +num_clicks 10 points_length: 2119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(183) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:05.163] dice before refine 0.02011275291442871 and after 0.6841498613357544, label 0: tensor(0, device='cuda:0'), label 1: tensor(183, device='cuda:0') +num_clicks 10 points_length: 1096 dynamic_size: 10 +filter out voxels: 32 +First batch: fn: 0.4398, fp: 0.0774, label 0: tensor(56), label 1: tensor(236) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 953 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1081, fp: 0.3417, label 0: tensor(234), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 765 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0698, fp: 0.2912, label 0: tensor(161), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 744 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0486, fp: 0.3025, label 0: tensor(141), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 679 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0510, fp: 0.2695, label 0: tensor(153), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 609 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0562, fp: 0.2312, label 0: tensor(176), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 569 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0609, fp: 0.2076, label 0: tensor(144), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 583 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0529, fp: 0.2223, label 0: tensor(148), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 598 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0500, fp: 0.2322, label 0: tensor(189), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 579 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0529, fp: 0.2204, label 0: tensor(179), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:10.083] dice before refine 0.3841243386268616 and after 0.8783695101737976, label 0: tensor(179, device='cuda:0'), label 1: tensor(50, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4016 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(378) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:10.543] dice before refine 0.0 and after 0.6138349771499634, label 0: tensor(0, device='cuda:0'), label 1: tensor(378, device='cuda:0') +num_clicks 10 points_length: 3182 dynamic_size: 10 +filter out voxels: 922 +First batch: fn: 0.3703, fp: 0.4221, label 0: tensor(242), label 1: tensor(425) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2722 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.1178, fp: 0.5600, label 0: tensor(385), label 1: tensor(172) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2623 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0779, fp: 0.5752, label 0: tensor(514), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1754 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0879, fp: 0.3489, label 0: tensor(283), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1619 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0732, fp: 0.3299, label 0: tensor(396), label 1: tensor(120) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1418 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0891, fp: 0.2639, label 0: tensor(380), label 1: tensor(164) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1362 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0889, fp: 0.2502, label 0: tensor(335), label 1: tensor(175) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1306 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0874, fp: 0.2378, label 0: tensor(265), label 1: tensor(171) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1309 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0862, fp: 0.2398, label 0: tensor(304), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1292 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0797, fp: 0.2420, label 0: tensor(271), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:17.944] dice before refine 0.4942072629928589 and after 0.8513262271881104, label 0: tensor(271, device='cuda:0'), label 1: tensor(153, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 343 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:18.320] dice before refine 0.06178956478834152 and after 0.16038751602172852, label 0: tensor(0, device='cuda:0'), label 1: tensor(36, device='cuda:0') +num_clicks 10 points_length: 3120 dynamic_size: 10 +filter out voxels: 2964 +First batch: fn: 0.1312, fp: 8.9650, label 0: tensor(39), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 240 dynamic_size: 10 +filter out voxels: 114 +First batch: fn: 0.0904, fp: 0.6093, label 0: tensor(40), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 216 dynamic_size: 10 +filter out voxels: 69 +First batch: fn: 0.0146, fp: 0.6152, label 0: tensor(62), label 1: tensor(4) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 205 dynamic_size: 10 +filter out voxels: 94 +First batch: fn: 0.0379, fp: 0.5598, label 0: tensor(41), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 105 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.0700, fp: 0.2362, label 0: tensor(48), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 127 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.0350, fp: 0.3353, label 0: tensor(53), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 100 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.0408, fp: 0.2507, label 0: tensor(54), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 109 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.0437, fp: 0.2741, label 0: tensor(37), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 90 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.0612, fp: 0.2012, label 0: tensor(34), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 96 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0496, fp: 0.2303, label 0: tensor(33), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:21.620] dice before refine 0.3257790505886078 and after 0.8537858724594116, label 0: tensor(33, device='cuda:0'), label 1: tensor(16, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 2248 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:22.037] dice before refine 0.05861889198422432 and after 0.2967887222766876, label 0: tensor(0, device='cuda:0'), label 1: tensor(196, device='cuda:0') +num_clicks 10 points_length: 6876 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3545, fp: 2.7042, label 0: tensor(438), label 1: tensor(158) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7787 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2020, fp: 3.2620, label 0: tensor(354), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8344 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1637, fp: 3.5480, label 0: tensor(337), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7799 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1481, fp: 3.3212, label 0: tensor(283), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8621 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1397, fp: 3.6953, label 0: tensor(363), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7940 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1330, fp: 3.3990, label 0: tensor(356), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8376 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1392, fp: 3.5867, label 0: tensor(258), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8061 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1370, fp: 3.4488, label 0: tensor(312), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8367 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1401, fp: 3.5819, label 0: tensor(403), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8039 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1321, fp: 3.4440, label 0: tensor(315), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:28.419] dice before refine 0.07521367818117142 and after 0.31856539845466614, label 0: tensor(315, device='cuda:0'), label 1: tensor(84, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3675 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(311) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:28.837] dice before refine 0.0 and after 0.3089236319065094, label 0: tensor(0, device='cuda:0'), label 1: tensor(311, device='cuda:0') +num_clicks 10 points_length: 10966 dynamic_size: 10 +filter out voxels: 9140 +First batch: fn: 0.3331, fp: 2.6509, label 0: tensor(124), label 1: tensor(252) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14470 dynamic_size: 10 +filter out voxels: 12388 +First batch: fn: 0.1412, fp: 3.7962, label 0: tensor(285), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12582 dynamic_size: 10 +filter out voxels: 10690 +First batch: fn: 0.0966, fp: 3.3271, label 0: tensor(322), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11478 dynamic_size: 10 +filter out voxels: 9886 +First batch: fn: 0.0939, fp: 3.0294, label 0: tensor(354), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11174 dynamic_size: 10 +filter out voxels: 9850 +First batch: fn: 0.1039, fp: 2.9366, label 0: tensor(248), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11596 dynamic_size: 10 +filter out voxels: 10396 +First batch: fn: 0.0920, fp: 3.0634, label 0: tensor(303), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11321 dynamic_size: 10 +filter out voxels: 10119 +First batch: fn: 0.1154, fp: 2.9652, label 0: tensor(177), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12433 dynamic_size: 10 +filter out voxels: 11201 +First batch: fn: 0.0797, fp: 3.3034, label 0: tensor(224), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11703 dynamic_size: 10 +filter out voxels: 10494 +First batch: fn: 0.0686, fp: 3.1159, label 0: tensor(313), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10643 dynamic_size: 10 +filter out voxels: 9562 +First batch: fn: 0.0797, fp: 2.8163, label 0: tensor(256), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:34.937] dice before refine 0.03714587911963463 and after 0.3763965964317322, label 0: tensor(256, device='cuda:0'), label 1: tensor(104, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.2867402664639733 +[22:52:35.565] epoch: 4/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.2867402664639733 stich left and right side (total size): 1 +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:36.086] dice before refine 0.0 and after 0.07209694385528564, label 0: tensor(0, device='cuda:0'), label 1: tensor(129, device='cuda:0') +num_clicks 10 points_length: 6049 dynamic_size: 10 +filter out voxels: 2527 +First batch: fn: 0.9252, fp: 1.0013, label 0: tensor(75), label 1: tensor(214) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6280 dynamic_size: 10 +filter out voxels: 3850 +First batch: fn: 0.6210, fp: 1.3790, label 0: tensor(80), label 1: tensor(200) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7609 dynamic_size: 10 +filter out voxels: 5457 +First batch: fn: 0.2732, fp: 2.1500, label 0: tensor(270), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9578 dynamic_size: 10 +filter out voxels: 8310 +First batch: fn: 0.2121, fp: 2.8382, label 0: tensor(54), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14081 dynamic_size: 10 +filter out voxels: 12549 +First batch: fn: 0.1252, fp: 4.3592, label 0: tensor(161), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13354 dynamic_size: 10 +filter out voxels: 12364 +First batch: fn: 0.1003, fp: 4.1525, label 0: tensor(105), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13822 dynamic_size: 10 +filter out voxels: 13004 +First batch: fn: 0.0812, fp: 4.3207, label 0: tensor(111), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13264 dynamic_size: 10 +filter out voxels: 12592 +First batch: fn: 0.1035, fp: 4.1207, label 0: tensor(78), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14261 dynamic_size: 10 +filter out voxels: 13527 +First batch: fn: 0.0669, fp: 4.4748, label 0: tensor(86), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13993 dynamic_size: 10 +filter out voxels: 13320 +First batch: fn: 0.0713, fp: 4.3850, label 0: tensor(80), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:40.777] dice before refine 0.0 and after 0.293170690536499, label 0: tensor(80, device='cuda:0'), label 1: tensor(60, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:41.147] dice before refine 0.0007887057145126164 and after 0.2629859447479248, label 0: tensor(0, device='cuda:0'), label 1: tensor(106, device='cuda:0') +num_clicks 10 points_length: 4512 dynamic_size: 10 +filter out voxels: 1243 +First batch: fn: 0.7436, fp: 0.6933, label 0: tensor(143), label 1: tensor(346) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1750 dynamic_size: 10 +filter out voxels: 360 +First batch: fn: 0.1803, fp: 0.3771, label 0: tensor(161), label 1: tensor(188) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1147 dynamic_size: 10 +filter out voxels: 292 +First batch: fn: 0.0548, fp: 0.3105, label 0: tensor(157), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 687 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0554, fp: 0.1634, label 0: tensor(107), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 722 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0318, fp: 0.1981, label 0: tensor(125), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 695 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0293, fp: 0.1920, label 0: tensor(161), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 571 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0500, fp: 0.1318, label 0: tensor(107), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 538 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0615, fp: 0.1099, label 0: tensor(70), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 533 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0503, fp: 0.1194, label 0: tensor(128), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 488 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0506, fp: 0.1048, label 0: tensor(134), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:45.751] dice before refine 0.0 and after 0.9253455996513367, label 0: tensor(134, device='cuda:0'), label 1: tensor(54, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:46.140] dice before refine 0.0 and after 0.025723472237586975, label 0: tensor(0, device='cuda:0'), label 1: tensor(66, device='cuda:0') +num_clicks 10 points_length: 6363 dynamic_size: 10 +filter out voxels: 2724 +First batch: fn: 0.9732, fp: 1.0532, label 0: tensor(113), label 1: tensor(230) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4538 dynamic_size: 10 +filter out voxels: 2102 +First batch: fn: 0.6717, fp: 0.7736, label 0: tensor(50), label 1: tensor(211) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4200 dynamic_size: 10 +filter out voxels: 2208 +First batch: fn: 0.2000, fp: 1.1376, label 0: tensor(170), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2124 dynamic_size: 10 +filter out voxels: 491 +First batch: fn: 0.1869, fp: 0.4895, label 0: tensor(208), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1605 dynamic_size: 10 +filter out voxels: 383 +First batch: fn: 0.1102, fp: 0.4010, label 0: tensor(200), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1151 dynamic_size: 10 +filter out voxels: 420 +First batch: fn: 0.1268, fp: 0.2398, label 0: tensor(68), label 1: tensor(124) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2005 dynamic_size: 10 +filter out voxels: 924 +First batch: fn: 0.0672, fp: 0.5713, label 0: tensor(179), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 914 dynamic_size: 10 +filter out voxels: 340 +First batch: fn: 0.1102, fp: 0.1809, label 0: tensor(81), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1360 dynamic_size: 10 +filter out voxels: 577 +First batch: fn: 0.0532, fp: 0.3799, label 0: tensor(121), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 842 dynamic_size: 10 +filter out voxels: 292 +First batch: fn: 0.0822, fp: 0.1860, label 0: tensor(67), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:50.780] dice before refine 0.0 and after 0.8640961647033691, label 0: tensor(67, device='cuda:0'), label 1: tensor(49, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:51.151] dice before refine 0.0 and after 0.22909259796142578, label 0: tensor(0, device='cuda:0'), label 1: tensor(93, device='cuda:0') +num_clicks 10 points_length: 4987 dynamic_size: 10 +filter out voxels: 1573 +First batch: fn: 0.7640, fp: 0.8242, label 0: tensor(140), label 1: tensor(242) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2443 dynamic_size: 10 +filter out voxels: 697 +First batch: fn: 0.4239, fp: 0.3541, label 0: tensor(88), label 1: tensor(338) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2623 dynamic_size: 10 +filter out voxels: 587 +First batch: fn: 0.0420, fp: 0.7933, label 0: tensor(334), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1373 dynamic_size: 10 +filter out voxels: 254 +First batch: fn: 0.0398, fp: 0.3975, label 0: tensor(217), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 895 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.0567, fp: 0.2283, label 0: tensor(213), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 698 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.0611, fp: 0.1611, label 0: tensor(94), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 764 dynamic_size: 10 +filter out voxels: 110 +First batch: fn: 0.0551, fp: 0.1882, label 0: tensor(125), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 688 dynamic_size: 10 +filter out voxels: 89 +First batch: fn: 0.0548, fp: 0.1643, label 0: tensor(133), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 685 dynamic_size: 10 +filter out voxels: 76 +First batch: fn: 0.0481, fp: 0.1701, label 0: tensor(160), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 616 dynamic_size: 10 +filter out voxels: 29 +First batch: fn: 0.0494, fp: 0.1468, label 0: tensor(98), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:55.994] dice before refine 0.0 and after 0.8768942356109619, label 0: tensor(98, device='cuda:0'), label 1: tensor(66, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +0.6609117497097362 +[22:52:57.264] epoch: 4/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.6609117497097362 stich left and right side (total size): 1 +num_clicks 10 points_length: 23364 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:52:57.785] dice before refine 0.0 and after 0.21133707463741302, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 20786 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8808, fp: 0.0089, label 0: tensor(70), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16701 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6997, fp: 0.0151, label 0: tensor(113), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14266 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5850, fp: 0.0256, label 0: tensor(154), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10510 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4196, fp: 0.0303, label 0: tensor(177), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7754 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2989, fp: 0.0330, label 0: tensor(199), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5575 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1983, fp: 0.0403, label 0: tensor(204), label 1: tensor(453) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4278 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1285, fp: 0.0546, label 0: tensor(319), label 1: tensor(345) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3518 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1034, fp: 0.0472, label 0: tensor(169), label 1: tensor(482) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2854 dynamic_size: 10 +filter out voxels: 48 +First batch: fn: 0.0483, fp: 0.0738, label 0: tensor(362), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2972 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.0702, fp: 0.0570, label 0: tensor(175), label 1: tensor(287) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:05.188] dice before refine 0.6951028108596802 and after 0.9424244165420532, label 0: tensor(175, device='cuda:0'), label 1: tensor(287, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 88105 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:05.751] dice before refine 0.001680122222751379 and after 0.07193803787231445, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 84836 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.9627, fp: 0.0002, label 0: tensor(9), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 78751 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8931, fp: 0.0007, label 0: tensor(36), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 61571 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6981, fp: 0.0007, label 0: tensor(43), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53733 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6087, fp: 0.0012, label 0: tensor(53), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46262 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5215, fp: 0.0036, label 0: tensor(139), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42952 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4851, fp: 0.0024, label 0: tensor(104), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40180 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4480, fp: 0.0080, label 0: tensor(275), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37382 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4165, fp: 0.0078, label 0: tensor(318), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33970 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.3779, fp: 0.0076, label 0: tensor(310), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29006 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.3232, fp: 0.0060, label 0: tensor(257), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:14.185] dice before refine 0.7740659713745117 and after 0.8327724933624268, label 0: tensor(257, device='cuda:0'), label 1: tensor(509, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 204709 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:14.866] dice before refine 0.1111111119389534 and after 0.025948498398065567, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 202179 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9868, fp: 0.0008, label 0: tensor(25), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 198710 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9703, fp: 0.0004, label 0: tensor(12), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 191009 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9325, fp: 0.0006, label 0: tensor(30), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 184031 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8961, fp: 0.0029, label 0: tensor(99), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 180594 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.8782, fp: 0.0040, label 0: tensor(150), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 176603 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8598, fp: 0.0029, label 0: tensor(108), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 172595 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8411, fp: 0.0020, label 0: tensor(107), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 168991 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8228, fp: 0.0027, label 0: tensor(155), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 167251 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8152, fp: 0.0019, label 0: tensor(94), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 165962 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8088, fp: 0.0019, label 0: tensor(103), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:24.086] dice before refine 0.4016650319099426 and after 0.35107529163360596, label 0: tensor(103, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 347521 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:24.934] dice before refine 0.08516115695238113 and after 0.01939445734024048, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 344119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9902, fp: 0.0000, label 0: tensor(1), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 340548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9799, fp: 0.0000, label 0: tensor(5), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 329831 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9491, fp: 0.0000, label 0: tensor(3), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 324099 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9326, fp: 0.0000, label 0: tensor(4), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 317457 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9135, fp: 0.0000, label 0: tensor(4), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 312869 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9002, fp: 0.0000, label 0: tensor(9), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 307747 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8855, fp: 0.0000, label 0: tensor(6), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 305227 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8783, fp: 0.0000, label 0: tensor(9), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 298944 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8602, fp: 0.0001, label 0: tensor(13), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 290793 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8367, fp: 0.0000, label 0: tensor(10), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:34.928] dice before refine 0.3619495928287506 and after 0.31639525294303894, label 0: tensor(10, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25099 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:35.387] dice before refine 0.07380441576242447 and after 0.2164468616247177, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 22220 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8777, fp: 0.0076, label 0: tensor(61), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17867 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6911, fp: 0.0207, label 0: tensor(124), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14040 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.5212, fp: 0.0382, label 0: tensor(212), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11082 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3979, fp: 0.0437, label 0: tensor(237), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9607 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3387, fp: 0.0440, label 0: tensor(226), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7843 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2590, fp: 0.0535, label 0: tensor(292), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6806 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1864, fp: 0.0847, label 0: tensor(368), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5262 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1151, fp: 0.0945, label 0: tensor(378), label 1: tensor(482) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4164 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0735, fp: 0.0924, label 0: tensor(336), label 1: tensor(242) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3921 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0717, fp: 0.0845, label 0: tensor(534), label 1: tensor(361) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:43.409] dice before refine 0.7370404601097107 and after 0.9338266849517822, label 0: tensor(534, device='cuda:0'), label 1: tensor(361, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 82461 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:43.990] dice before refine 0.006092475261539221 and after 0.10479024797677994, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 77911 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.9447, fp: 0.0001, label 0: tensor(6), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 69780 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.8409, fp: 0.0053, label 0: tensor(149), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 64444 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7772, fp: 0.0043, label 0: tensor(159), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 52105 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6286, fp: 0.0033, label 0: tensor(152), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44293 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5312, fp: 0.0060, label 0: tensor(126), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41081 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4876, fp: 0.0106, label 0: tensor(302), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36330 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4334, fp: 0.0071, label 0: tensor(212), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30744 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3655, fp: 0.0074, label 0: tensor(259), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26900 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3168, fp: 0.0094, label 0: tensor(368), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23660 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2786, fp: 0.0083, label 0: tensor(308), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:52.995] dice before refine 0.7940438985824585 and after 0.8588095307350159, label 0: tensor(308, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 308412 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:53:53.774] dice before refine 0.11996674537658691 and after 0.04748385027050972, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 300937 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9757, fp: 0.0001, label 0: tensor(20), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 287857 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9333, fp: 0.0000, label 0: tensor(6), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 276987 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8981, fp: 0.0000, label 0: tensor(7), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 274193 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8890, fp: 0.0000, label 0: tensor(5), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 273134 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8856, fp: 0.0000, label 0: tensor(2), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 268865 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8715, fp: 0.0003, label 0: tensor(41), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 266520 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8640, fp: 0.0002, label 0: tensor(37), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 263640 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8547, fp: 0.0002, label 0: tensor(29), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 262157 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8499, fp: 0.0001, label 0: tensor(24), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 257925 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8362, fp: 0.0001, label 0: tensor(19), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:03.295] dice before refine 0.36536267399787903 and after 0.35501617193222046, label 0: tensor(19, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 355661 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:04.125] dice before refine 0.10527966916561127 and after 0.030985524877905846, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 350134 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9843, fp: 0.0002, label 0: tensor(9), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 344000 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9669, fp: 0.0003, label 0: tensor(15), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 337501 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9486, fp: 0.0004, label 0: tensor(42), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 332725 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9350, fp: 0.0005, label 0: tensor(83), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 325567 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9150, fp: 0.0004, label 0: tensor(50), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 317636 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8927, fp: 0.0004, label 0: tensor(45), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 311083 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8744, fp: 0.0003, label 0: tensor(41), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 298968 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8403, fp: 0.0003, label 0: tensor(49), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 294809 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8287, fp: 0.0003, label 0: tensor(40), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 286603 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8054, fp: 0.0004, label 0: tensor(71), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:14.250] dice before refine 0.3915891945362091 and after 0.3294200599193573, label 0: tensor(71, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.2258683443069458 +[22:54:14.923] epoch: 4/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.2258683443069458 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:15.475] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 54 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 1.0000, fp: 0.6364, label 0: tensor(4), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 1.0000, fp: 0.0303, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 1.0000, fp: 0.0606, label 0: tensor(1), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 1.0000, fp: 0.0303, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 1.0000, fp: 0.0303, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.9697, fp: 0.0303, label 0: tensor(1), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:18.310] dice before refine 0.0 and after 0.1111111119389534, label 0: tensor(1, device='cuda:0'), label 1: tensor(9, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:18.685] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 160 dynamic_size: 10 +filter out voxels: 127 +First batch: fn: 1.0000, fp: 3.8485, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 59 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 1.0000, fp: 0.7879, label 0: tensor(2), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 1.0000, fp: 0.0303, label 0: tensor(1), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 1.0000, fp: 0.2121, label 0: tensor(2), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 58 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 1.0000, fp: 0.7576, label 0: tensor(5), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 1.0000, fp: 0.4848, label 0: tensor(2), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:21.504] dice before refine 0.0 and after 0.0784313753247261, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.007130125029520555 +[22:54:21.880] epoch: 4/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.007130125029520555 stich left and right side (total size): 1 +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(177) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:22.335] dice before refine 0.0 and after 0.6277503371238708, label 0: tensor(0, device='cuda:0'), label 1: tensor(177, device='cuda:0') +num_clicks 10 points_length: 829 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.5021, fp: 0.0883, label 0: tensor(35), label 1: tensor(213) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 533 dynamic_size: 10 +filter out voxels: 42 +First batch: fn: 0.0755, fp: 0.3041, label 0: tensor(62), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 501 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.1019, fp: 0.2550, label 0: tensor(76), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 450 dynamic_size: 10 +filter out voxels: 34 +First batch: fn: 0.0883, fp: 0.2322, label 0: tensor(78), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 423 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.0919, fp: 0.2094, label 0: tensor(74), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 406 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.0983, fp: 0.1909, label 0: tensor(61), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 398 dynamic_size: 10 +filter out voxels: 31 +First batch: fn: 0.0848, fp: 0.1987, label 0: tensor(61), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 395 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.0962, fp: 0.1852, label 0: tensor(63), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 390 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.0912, fp: 0.1866, label 0: tensor(62), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 391 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.0855, fp: 0.1930, label 0: tensor(67), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:26.216] dice before refine 0.1705128252506256 and after 0.8693877458572388, label 0: tensor(67, device='cuda:0'), label 1: tensor(36, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4392 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:26.633] dice before refine 0.0 and after 0.7798290252685547, label 0: tensor(0, device='cuda:0'), label 1: tensor(502, device='cuda:0') +num_clicks 10 points_length: 1777 dynamic_size: 10 +filter out voxels: 40 +First batch: fn: 0.2835, fp: 0.1211, label 0: tensor(100), label 1: tensor(230) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1910 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.0653, fp: 0.3695, label 0: tensor(289), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1713 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.0790, fp: 0.3110, label 0: tensor(273), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1496 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.0608, fp: 0.2798, label 0: tensor(279), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1481 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.0512, fp: 0.2860, label 0: tensor(260), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1694 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.0526, fp: 0.3331, label 0: tensor(252), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1683 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.0494, fp: 0.3338, label 0: tensor(279), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1524 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0546, fp: 0.2923, label 0: tensor(269), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1465 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0581, fp: 0.2755, label 0: tensor(203), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1659 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.0517, fp: 0.3260, label 0: tensor(235), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:32.240] dice before refine 0.4467446208000183 and after 0.8481451272964478, label 0: tensor(235, device='cuda:0'), label 1: tensor(92, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:32.614] dice before refine 0.0 and after 0.684909462928772, label 0: tensor(0, device='cuda:0'), label 1: tensor(178, device='cuda:0') +num_clicks 10 points_length: 783 dynamic_size: 10 +filter out voxels: 170 +First batch: fn: 0.3939, fp: 0.1638, label 0: tensor(22), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 677 dynamic_size: 10 +filter out voxels: 104 +First batch: fn: 0.0983, fp: 0.3839, label 0: tensor(84), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 488 dynamic_size: 10 +filter out voxels: 42 +First batch: fn: 0.0734, fp: 0.2742, label 0: tensor(65), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 424 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.0748, fp: 0.2272, label 0: tensor(56), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 405 dynamic_size: 10 +filter out voxels: 35 +First batch: fn: 0.0776, fp: 0.2108, label 0: tensor(62), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 398 dynamic_size: 10 +filter out voxels: 31 +First batch: fn: 0.0819, fp: 0.2016, label 0: tensor(63), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 374 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.0769, fp: 0.1895, label 0: tensor(57), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 368 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.0791, fp: 0.1830, label 0: tensor(58), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 365 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.0833, fp: 0.1766, label 0: tensor(78), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 358 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.0926, fp: 0.1624, label 0: tensor(75), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:36.258] dice before refine 0.26015302538871765 and after 0.8793399930000305, label 0: tensor(75, device='cuda:0'), label 1: tensor(47, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4409 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(476) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:36.668] dice before refine 0.0 and after 0.7540153861045837, label 0: tensor(0, device='cuda:0'), label 1: tensor(476, device='cuda:0') +num_clicks 10 points_length: 2236 dynamic_size: 10 +filter out voxels: 603 +First batch: fn: 0.2227, fp: 0.2844, label 0: tensor(187), label 1: tensor(205) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1996 dynamic_size: 10 +filter out voxels: 186 +First batch: fn: 0.0705, fp: 0.3822, label 0: tensor(328), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1408 dynamic_size: 10 +filter out voxels: 33 +First batch: fn: 0.0649, fp: 0.2545, label 0: tensor(261), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1210 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0567, fp: 0.2177, label 0: tensor(251), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1089 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0597, fp: 0.1873, label 0: tensor(153), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1153 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0447, fp: 0.2168, label 0: tensor(237), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1022 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.0479, fp: 0.1839, label 0: tensor(146), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1055 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0463, fp: 0.1930, label 0: tensor(213), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 959 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0542, fp: 0.1633, label 0: tensor(175), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 986 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0504, fp: 0.1733, label 0: tensor(211), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:42.105] dice before refine 0.4836013913154602 and after 0.8998375535011292, label 0: tensor(211, device='cuda:0'), label 1: tensor(77, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(266) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:42.486] dice before refine 0.0 and after 0.6457809209823608, label 0: tensor(0, device='cuda:0'), label 1: tensor(266, device='cuda:0') +num_clicks 10 points_length: 1549 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.4536, fp: 0.1459, label 0: tensor(121), label 1: tensor(166) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1102 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2179, fp: 0.2086, label 0: tensor(75), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1000 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.1598, fp: 0.2272, label 0: tensor(100), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 947 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.1080, fp: 0.2585, label 0: tensor(161), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 860 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1556, fp: 0.1772, label 0: tensor(83), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 762 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.0863, fp: 0.2086, label 0: tensor(126), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 760 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1146, fp: 0.1796, label 0: tensor(57), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 730 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.0817, fp: 0.2009, label 0: tensor(101), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 757 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.0530, fp: 0.2399, label 0: tensor(120), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 709 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.0747, fp: 0.1997, label 0: tensor(138), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:46.692] dice before refine 0.6634894609451294 and after 0.8712453842163086, label 0: tensor(138, device='cuda:0'), label 1: tensor(109, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8531 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:47.109] dice before refine 0.3911530673503876 and after 0.6976935863494873, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 4404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4043, fp: 0.1119, label 0: tensor(155), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3693 dynamic_size: 10 +filter out voxels: 234 +First batch: fn: 0.0870, fp: 0.3459, label 0: tensor(465), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3440 dynamic_size: 10 +filter out voxels: 173 +First batch: fn: 0.0212, fp: 0.3820, label 0: tensor(531), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2819 dynamic_size: 10 +filter out voxels: 160 +First batch: fn: 0.0173, fp: 0.3131, label 0: tensor(451), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2544 dynamic_size: 10 +filter out voxels: 151 +First batch: fn: 0.0159, fp: 0.2823, label 0: tensor(308), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2501 dynamic_size: 10 +filter out voxels: 146 +First batch: fn: 0.0170, fp: 0.2762, label 0: tensor(402), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2317 dynamic_size: 10 +filter out voxels: 134 +First batch: fn: 0.0209, fp: 0.2507, label 0: tensor(421), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2230 dynamic_size: 10 +filter out voxels: 131 +First batch: fn: 0.0246, fp: 0.2368, label 0: tensor(341), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2236 dynamic_size: 10 +filter out voxels: 127 +First batch: fn: 0.0203, fp: 0.2418, label 0: tensor(289), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2213 dynamic_size: 10 +filter out voxels: 124 +First batch: fn: 0.0191, fp: 0.2403, label 0: tensor(300), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:53.927] dice before refine 0.6806754469871521 and after 0.8918081521987915, label 0: tensor(300, device='cuda:0'), label 1: tensor(71, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(327) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:54.311] dice before refine 0.0 and after 0.7618853449821472, label 0: tensor(0, device='cuda:0'), label 1: tensor(327, device='cuda:0') +num_clicks 10 points_length: 1167 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.2775, fp: 0.1741, label 0: tensor(89), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 891 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.1656, fp: 0.1792, label 0: tensor(50), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 918 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.1494, fp: 0.2059, label 0: tensor(93), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 840 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.1087, fp: 0.2163, label 0: tensor(126), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 812 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.0987, fp: 0.2156, label 0: tensor(200), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 724 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0878, fp: 0.1923, label 0: tensor(68), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 718 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.0886, fp: 0.1892, label 0: tensor(86), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 705 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.0650, fp: 0.2078, label 0: tensor(135), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 716 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.0588, fp: 0.2183, label 0: tensor(74), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 680 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.0592, fp: 0.2039, label 0: tensor(109), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:58.443] dice before refine 0.5774737596511841 and after 0.8746867179870605, label 0: tensor(109, device='cuda:0'), label 1: tensor(55, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(556) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:54:58.867] dice before refine 0.607514500617981 and after 0.7058295607566833, label 0: tensor(0, device='cuda:0'), label 1: tensor(556, device='cuda:0') +num_clicks 10 points_length: 4587 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.3562, fp: 0.1804, label 0: tensor(307), label 1: tensor(483) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2882 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0358, fp: 0.3014, label 0: tensor(444), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2818 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0184, fp: 0.3113, label 0: tensor(380), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2391 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0209, fp: 0.2588, label 0: tensor(324), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2135 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0227, fp: 0.2271, label 0: tensor(343), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2181 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0187, fp: 0.2364, label 0: tensor(282), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2113 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0170, fp: 0.2302, label 0: tensor(288), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1940 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0202, fp: 0.2067, label 0: tensor(288), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1749 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0221, fp: 0.1825, label 0: tensor(242), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1706 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0247, fp: 0.1749, label 0: tensor(237), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:05.356] dice before refine 0.7349423766136169 and after 0.9074587821960449, label 0: tensor(237, device='cuda:0'), label 1: tensor(81, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +0.8742133324796503 +[22:55:06.084] epoch: 4/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.8742133324796503 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:06.580] dice before refine 0.0 and after 0.20410703122615814, label 0: tensor(0, device='cuda:0'), label 1: tensor(108, device='cuda:0') +num_clicks 10 points_length: 1279 dynamic_size: 10 +filter out voxels: 102 +First batch: fn: 0.8676, fp: 0.1646, label 0: tensor(21), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 835 dynamic_size: 10 +filter out voxels: 79 +First batch: fn: 0.4334, fp: 0.2405, label 0: tensor(54), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 820 dynamic_size: 10 +filter out voxels: 120 +First batch: fn: 0.1453, fp: 0.5165, label 0: tensor(55), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 781 dynamic_size: 10 +filter out voxels: 102 +First batch: fn: 0.0952, fp: 0.5351, label 0: tensor(98), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 671 dynamic_size: 10 +filter out voxels: 84 +First batch: fn: 0.0993, fp: 0.4423, label 0: tensor(56), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 644 dynamic_size: 10 +filter out voxels: 99 +First batch: fn: 0.0864, fp: 0.4334, label 0: tensor(81), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 579 dynamic_size: 10 +filter out voxels: 89 +First batch: fn: 0.1203, fp: 0.3471, label 0: tensor(45), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 480 dynamic_size: 10 +filter out voxels: 82 +First batch: fn: 0.1130, fp: 0.2744, label 0: tensor(49), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 471 dynamic_size: 10 +filter out voxels: 92 +First batch: fn: 0.1130, fp: 0.2672, label 0: tensor(90), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 404 dynamic_size: 10 +filter out voxels: 53 +First batch: fn: 0.1969, fp: 0.1291, label 0: tensor(25), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:10.237] dice before refine 0.0 and after 0.8226442337036133, label 0: tensor(25, device='cuda:0'), label 1: tensor(51, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 5457 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:10.654] dice before refine 0.0 and after 0.5216124057769775, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 3940 dynamic_size: 10 +filter out voxels: 36 +First batch: fn: 0.6064, fp: 0.1156, label 0: tensor(166), label 1: tensor(391) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2722 dynamic_size: 10 +filter out voxels: 20 +First batch: fn: 0.1263, fp: 0.3725, label 0: tensor(387), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2618 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0936, fp: 0.3861, label 0: tensor(486), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2031 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.0779, fp: 0.2943, label 0: tensor(309), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2038 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0759, fp: 0.2976, label 0: tensor(372), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2108 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0625, fp: 0.3238, label 0: tensor(326), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1873 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.0581, fp: 0.2851, label 0: tensor(395), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1736 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.0528, fp: 0.2653, label 0: tensor(506), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1506 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.0722, fp: 0.2038, label 0: tensor(220), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1654 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.0557, fp: 0.2474, label 0: tensor(263), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:17.415] dice before refine 0.499296098947525 and after 0.8674495220184326, label 0: tensor(263, device='cuda:0'), label 1: tensor(96, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:17.847] dice before refine 0.0 and after 0.5207509994506836, label 0: tensor(0, device='cuda:0'), label 1: tensor(149, device='cuda:0') +num_clicks 10 points_length: 970 dynamic_size: 10 +filter out voxels: 32 +First batch: fn: 0.5747, fp: 0.2082, label 0: tensor(28), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 906 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.2171, fp: 0.5141, label 0: tensor(91), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 772 dynamic_size: 10 +filter out voxels: 39 +First batch: fn: 0.2203, fp: 0.4027, label 0: tensor(74), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 657 dynamic_size: 10 +filter out voxels: 44 +First batch: fn: 0.1574, fp: 0.3729, label 0: tensor(95), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 542 dynamic_size: 10 +filter out voxels: 33 +First batch: fn: 0.2074, fp: 0.2300, label 0: tensor(64), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 600 dynamic_size: 10 +filter out voxels: 64 +First batch: fn: 0.1259, fp: 0.3584, label 0: tensor(76), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 497 dynamic_size: 10 +filter out voxels: 52 +First batch: fn: 0.1525, fp: 0.2486, label 0: tensor(46), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 518 dynamic_size: 10 +filter out voxels: 66 +First batch: fn: 0.1082, fp: 0.3099, label 0: tensor(56), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 488 dynamic_size: 10 +filter out voxels: 60 +First batch: fn: 0.1219, fp: 0.2720, label 0: tensor(77), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 450 dynamic_size: 10 +filter out voxels: 48 +First batch: fn: 0.1412, fp: 0.2220, label 0: tensor(83), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:21.524] dice before refine 0.0 and after 0.8306836485862732, label 0: tensor(83, device='cuda:0'), label 1: tensor(34, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 31898 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:21.994] dice before refine 0.48421624302864075 and after 0.43971335887908936, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 24238 dynamic_size: 10 +filter out voxels: 1318 +First batch: fn: 0.7018, fp: 0.0580, label 0: tensor(88), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16882 dynamic_size: 10 +filter out voxels: 175 +First batch: fn: 0.4962, fp: 0.0331, label 0: tensor(249), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12301 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.3389, fp: 0.0467, label 0: tensor(281), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10591 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2409, fp: 0.0911, label 0: tensor(526), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8583 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1684, fp: 0.1007, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6861 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0814, fp: 0.1337, label 0: tensor(508), label 1: tensor(454) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6222 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0266, fp: 0.1684, label 0: tensor(509), label 1: tensor(206) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5621 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0177, fp: 0.1585, label 0: tensor(510), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5608 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0140, fp: 0.1618, label 0: tensor(510), label 1: tensor(161) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5330 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0134, fp: 0.1537, label 0: tensor(510), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:30.720] dice before refine 0.7930055856704712 and after 0.9243650436401367, label 0: tensor(510, device='cuda:0'), label 1: tensor(151, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +0.8217205865816637 +[22:55:31.642] epoch: 4/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.8217205865816637 stich left and right side (total size): 1 +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:32.073] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(34, device='cuda:0') +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 411 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.8158, fp: 0.0162, label 0: tensor(3), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 214 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.2045, fp: 0.2287, label 0: tensor(39), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 206 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.3097, fp: 0.1073, label 0: tensor(26), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 213 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.1700, fp: 0.2611, label 0: tensor(51), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 179 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.2206, fp: 0.1417, label 0: tensor(35), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 172 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.1761, fp: 0.1721, label 0: tensor(38), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 168 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.1741, fp: 0.1660, label 0: tensor(42), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 167 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.1700, fp: 0.1680, label 0: tensor(49), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 165 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.1721, fp: 0.1619, label 0: tensor(46), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:35.336] dice before refine 0.0 and after 0.8316429853439331, label 0: tensor(46, device='cuda:0'), label 1: tensor(25, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:35.692] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(42, device='cuda:0') +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 370 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7409, fp: 0.0081, label 0: tensor(4), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 213 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.2530, fp: 0.1781, label 0: tensor(44), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 206 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.2348, fp: 0.1822, label 0: tensor(41), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 187 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.2085, fp: 0.1700, label 0: tensor(36), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 176 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.2065, fp: 0.1498, label 0: tensor(41), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 171 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.1984, fp: 0.1478, label 0: tensor(36), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 175 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.1599, fp: 0.1943, label 0: tensor(38), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 162 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.1741, fp: 0.1538, label 0: tensor(29), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 165 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.1478, fp: 0.1862, label 0: tensor(43), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:38.916] dice before refine 0.0 and after 0.837067186832428, label 0: tensor(43, device='cuda:0'), label 1: tensor(19, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:39.282] dice before refine 0.0 and after 0.21684867143630981, label 0: tensor(0, device='cuda:0'), label 1: tensor(116, device='cuda:0') +num_clicks 10 points_length: 1004 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.8489, fp: 0.2424, label 0: tensor(66), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 503 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.2457, fp: 0.3011, label 0: tensor(81), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 436 dynamic_size: 10 +filter out voxels: 46 +First batch: fn: 0.2370, fp: 0.2370, label 0: tensor(74), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 402 dynamic_size: 10 +filter out voxels: 42 +First batch: fn: 0.1989, fp: 0.2380, label 0: tensor(63), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 372 dynamic_size: 10 +filter out voxels: 39 +First batch: fn: 0.1500, fp: 0.2543, label 0: tensor(44), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 368 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.1380, fp: 0.2620, label 0: tensor(69), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 351 dynamic_size: 10 +filter out voxels: 47 +First batch: fn: 0.1533, fp: 0.2283, label 0: tensor(61), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 310 dynamic_size: 10 +filter out voxels: 41 +First batch: fn: 0.0859, fp: 0.2511, label 0: tensor(78), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 310 dynamic_size: 10 +filter out voxels: 53 +First batch: fn: 0.1054, fp: 0.2315, label 0: tensor(69), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 315 dynamic_size: 10 +filter out voxels: 56 +First batch: fn: 0.0946, fp: 0.2478, label 0: tensor(73), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:43.050] dice before refine 0.0 and after 0.8438605070114136, label 0: tensor(73, device='cuda:0'), label 1: tensor(35, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:43.420] dice before refine 0.0 and after 0.4719424545764923, label 0: tensor(0, device='cuda:0'), label 1: tensor(114, device='cuda:0') +num_clicks 10 points_length: 734 dynamic_size: 10 +filter out voxels: 63 +First batch: fn: 0.6435, fp: 0.1543, label 0: tensor(20), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 455 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.1826, fp: 0.3120, label 0: tensor(59), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 692 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1946, fp: 0.5576, label 0: tensor(94), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 499 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.1696, fp: 0.3728, label 0: tensor(63), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 498 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.1337, fp: 0.4076, label 0: tensor(126), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 370 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1272, fp: 0.2750, label 0: tensor(101), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 326 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.0935, fp: 0.2609, label 0: tensor(74), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 361 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0848, fp: 0.3076, label 0: tensor(74), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 357 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.0870, fp: 0.3011, label 0: tensor(106), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 341 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0891, fp: 0.2815, label 0: tensor(91), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:47.203] dice before refine 0.0 and after 0.8213755488395691, label 0: tensor(91, device='cuda:0'), label 1: tensor(25, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 838 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:47.573] dice before refine 0.0 and after 0.4815724790096283, label 0: tensor(0, device='cuda:0'), label 1: tensor(111, device='cuda:0') +num_clicks 10 points_length: 633 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6492, fp: 0.1062, label 0: tensor(41), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 477 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.0895, fp: 0.4797, label 0: tensor(136), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 307 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.1396, fp: 0.2267, label 0: tensor(59), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 318 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1074, fp: 0.2721, label 0: tensor(82), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 270 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.1241, fp: 0.1981, label 0: tensor(82), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 261 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.1265, fp: 0.1850, label 0: tensor(63), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 255 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1098, fp: 0.1945, label 0: tensor(54), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 249 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1062, fp: 0.1909, label 0: tensor(75), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 241 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1086, fp: 0.1790, label 0: tensor(70), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 245 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0931, fp: 0.1993, label 0: tensor(83), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:51.316] dice before refine 0.0 and after 0.8636884093284607, label 0: tensor(83, device='cuda:0'), label 1: tensor(22, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 901 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:51.691] dice before refine 0.0 and after 0.5496277809143066, label 0: tensor(0, device='cuda:0'), label 1: tensor(154, device='cuda:0') +num_clicks 10 points_length: 726 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.5083, fp: 0.2974, label 0: tensor(65), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 641 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.2464, fp: 0.4650, label 0: tensor(126), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 510 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1665, fp: 0.3996, label 0: tensor(142), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 405 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2098, fp: 0.2397, label 0: tensor(92), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 435 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1243, fp: 0.3585, label 0: tensor(100), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 382 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1609, fp: 0.2630, label 0: tensor(91), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 363 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1487, fp: 0.2542, label 0: tensor(116), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 364 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1465, fp: 0.2575, label 0: tensor(98), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 355 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1365, fp: 0.2575, label 0: tensor(100), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 360 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1343, fp: 0.2653, label 0: tensor(123), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:55.765] dice before refine 0.003331482410430908 and after 0.8161764740943909, label 0: tensor(123, device='cuda:0'), label 1: tensor(36, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1964 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:55:56.137] dice before refine 0.0 and after 0.3059028685092926, label 0: tensor(0, device='cuda:0'), label 1: tensor(129, device='cuda:0') +num_clicks 10 points_length: 2387 dynamic_size: 10 +filter out voxels: 936 +First batch: fn: 0.7322, fp: 0.4832, label 0: tensor(14), label 1: tensor(281) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4624 dynamic_size: 10 +filter out voxels: 3042 +First batch: fn: 0.0300, fp: 2.3243, label 0: tensor(326), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2573 dynamic_size: 10 +filter out voxels: 992 +First batch: fn: 0.0545, fp: 1.2556, label 0: tensor(276), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1175 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0316, fp: 0.5667, label 0: tensor(192), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1292 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0331, fp: 0.6247, label 0: tensor(133), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1225 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0321, fp: 0.5916, label 0: tensor(216), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0285, fp: 0.5412, label 0: tensor(169), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 948 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0397, fp: 0.4430, label 0: tensor(170), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 946 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0351, fp: 0.4465, label 0: tensor(126), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1025 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0418, fp: 0.4801, label 0: tensor(167), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:00.751] dice before refine 0.03162699565291405 and after 0.803320586681366, label 0: tensor(167, device='cuda:0'), label 1: tensor(35, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2027 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:01.124] dice before refine 0.0 and after 0.06040892377495766, label 0: tensor(0, device='cuda:0'), label 1: tensor(116, device='cuda:0') +num_clicks 10 points_length: 2022 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.9679, fp: 0.0296, label 0: tensor(7), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1014 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.3592, fp: 0.1411, label 0: tensor(89), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2599 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0666, fp: 1.2156, label 0: tensor(342), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1797 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0676, fp: 0.8189, label 0: tensor(173), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1593 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0622, fp: 0.7237, label 0: tensor(165), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1373 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0523, fp: 0.6251, label 0: tensor(235), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 903 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0651, fp: 0.3804, label 0: tensor(110), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 933 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0696, fp: 0.3907, label 0: tensor(141), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 865 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0538, fp: 0.3730, label 0: tensor(154), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 823 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0409, fp: 0.3651, label 0: tensor(127), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:05.606] dice before refine 0.024193547666072845 and after 0.8218657374382019, label 0: tensor(127, device='cuda:0'), label 1: tensor(45, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.6476714282550595 +[22:56:06.331] epoch: 4/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.6476714282550595 stich left and right side (total size): 1 +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:06.818] dice before refine 0.0 and after 0.5369511842727661, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 5495 dynamic_size: 10 +filter out voxels: 163 +First batch: fn: 0.5634, fp: 0.1895, label 0: tensor(170), label 1: tensor(467) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5416 dynamic_size: 10 +filter out voxels: 32 +First batch: fn: 0.2002, fp: 0.5419, label 0: tensor(542), label 1: tensor(192) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5193 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1785, fp: 0.5330, label 0: tensor(517), label 1: tensor(156) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4784 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.1431, fp: 0.5125, label 0: tensor(435), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4490 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.1054, fp: 0.5099, label 0: tensor(401), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4229 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.1026, fp: 0.4768, label 0: tensor(274), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4456 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0899, fp: 0.5207, label 0: tensor(482), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3973 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0891, fp: 0.4553, label 0: tensor(297), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4186 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0806, fp: 0.4930, label 0: tensor(471), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3775 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0873, fp: 0.4300, label 0: tensor(390), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:14.238] dice before refine 0.33596035838127136 and after 0.783513605594635, label 0: tensor(390, device='cuda:0'), label 1: tensor(104, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:14.663] dice before refine 0.0 and after 0.5939612984657288, label 0: tensor(0, device='cuda:0'), label 1: tensor(520, device='cuda:0') +num_clicks 10 points_length: 5164 dynamic_size: 10 +filter out voxels: 107 +First batch: fn: 0.4825, fp: 0.2251, label 0: tensor(188), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5830 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.1928, fp: 0.6061, label 0: tensor(508), label 1: tensor(189) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5897 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.1542, fp: 0.6539, label 0: tensor(509), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5713 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.1039, fp: 0.6790, label 0: tensor(510), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5377 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0914, fp: 0.6454, label 0: tensor(509), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4615 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.0854, fp: 0.5470, label 0: tensor(513), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3958 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0848, fp: 0.4575, label 0: tensor(490), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3691 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.0839, fp: 0.4219, label 0: tensor(487), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3423 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.0862, fp: 0.3828, label 0: tensor(455), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3111 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.0839, fp: 0.3424, label 0: tensor(382), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:22.295] dice before refine 0.4250224232673645 and after 0.8333021402359009, label 0: tensor(382, device='cuda:0'), label 1: tensor(97, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(454) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:22.715] dice before refine 0.0 and after 0.5320120453834534, label 0: tensor(0, device='cuda:0'), label 1: tensor(454, device='cuda:0') +num_clicks 10 points_length: 4817 dynamic_size: 10 +filter out voxels: 331 +First batch: fn: 0.6138, fp: 0.0656, label 0: tensor(71), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3750 dynamic_size: 10 +filter out voxels: 314 +First batch: fn: 0.2382, fp: 0.2907, label 0: tensor(327), label 1: tensor(192) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3178 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1883, fp: 0.2599, label 0: tensor(343), label 1: tensor(187) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3164 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.1417, fp: 0.3045, label 0: tensor(394), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2840 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.1307, fp: 0.2698, label 0: tensor(277), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2659 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.1073, fp: 0.2677, label 0: tensor(369), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2370 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.1096, fp: 0.2247, label 0: tensor(275), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2293 dynamic_size: 10 +filter out voxels: 35 +First batch: fn: 0.0975, fp: 0.2260, label 0: tensor(265), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2121 dynamic_size: 10 +filter out voxels: 32 +First batch: fn: 0.1041, fp: 0.1951, label 0: tensor(309), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2074 dynamic_size: 10 +filter out voxels: 44 +First batch: fn: 0.0977, fp: 0.1948, label 0: tensor(260), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:29.299] dice before refine 0.4247649013996124 and after 0.8598540425300598, label 0: tensor(260, device='cuda:0'), label 1: tensor(135, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(309) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:29.723] dice before refine 0.0 and after 0.3861614465713501, label 0: tensor(0, device='cuda:0'), label 1: tensor(309, device='cuda:0') +num_clicks 10 points_length: 5589 dynamic_size: 10 +filter out voxels: 169 +First batch: fn: 0.7520, fp: 0.0362, label 0: tensor(44), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3647 dynamic_size: 10 +filter out voxels: 83 +First batch: fn: 0.2800, fp: 0.2344, label 0: tensor(320), label 1: tensor(321) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3849 dynamic_size: 10 +filter out voxels: 33 +First batch: fn: 0.1842, fp: 0.3587, label 0: tensor(417), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3073 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.1803, fp: 0.2532, label 0: tensor(300), label 1: tensor(170) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2929 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.1528, fp: 0.2604, label 0: tensor(333), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2673 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.1274, fp: 0.2496, label 0: tensor(394), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2317 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.1312, fp: 0.1956, label 0: tensor(344), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2093 dynamic_size: 10 +filter out voxels: 51 +First batch: fn: 0.1049, fp: 0.1903, label 0: tensor(239), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2240 dynamic_size: 10 +filter out voxels: 74 +First batch: fn: 0.0913, fp: 0.2247, label 0: tensor(347), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2012 dynamic_size: 10 +filter out voxels: 67 +First batch: fn: 0.0944, fp: 0.1894, label 0: tensor(295), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:36.470] dice before refine 0.38904252648353577 and after 0.8672316670417786, label 0: tensor(295, device='cuda:0'), label 1: tensor(104, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 36954 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:36.998] dice before refine 0.33800214529037476 and after 0.26974108815193176, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 31702 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8416, fp: 0.0163, label 0: tensor(185), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29357 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7436, fp: 0.0508, label 0: tensor(427), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26237 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6305, fp: 0.0795, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22822 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5091, fp: 0.1085, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19745 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4269, fp: 0.1074, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18489 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3821, fp: 0.1182, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16504 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3125, fp: 0.1341, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14558 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2482, fp: 0.1458, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12866 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1831, fp: 0.1651, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11455 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1423, fp: 0.1677, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:47.767] dice before refine 0.6696392297744751 and after 0.8661708831787109, label 0: tensor(507, device='cuda:0'), label 1: tensor(503, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 35104 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:48.295] dice before refine 0.32791271805763245 and after 0.2257792353630066, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 31198 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8704, fp: 0.0183, label 0: tensor(191), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27228 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7250, fp: 0.0506, label 0: tensor(304), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25924 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6619, fp: 0.0765, label 0: tensor(456), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24377 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5799, fp: 0.1145, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20627 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4924, fp: 0.0952, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18021 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3983, fp: 0.1151, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15815 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3071, fp: 0.1434, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13567 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.2370, fp: 0.1495, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11904 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.1873, fp: 0.1518, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10606 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.1306, fp: 0.1715, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:58.656] dice before refine 0.6369342803955078 and after 0.8630456924438477, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26886 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:56:59.173] dice before refine 0.21478211879730225 and after 0.2852247953414917, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 24198 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8204, fp: 0.0796, label 0: tensor(349), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20681 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7055, fp: 0.0638, label 0: tensor(380), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19057 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5950, fp: 0.1139, label 0: tensor(355), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16803 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5089, fp: 0.1161, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14056 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3914, fp: 0.1314, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13051 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2833, fp: 0.2021, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13098 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2125, fp: 0.2747, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11767 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1245, fp: 0.3132, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10664 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0756, fp: 0.3210, label 0: tensor(508), label 1: tensor(386) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9506 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0478, fp: 0.3058, label 0: tensor(507), label 1: tensor(306) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:09.570] dice before refine 0.6127193570137024 and after 0.8518475294113159, label 0: tensor(507, device='cuda:0'), label 1: tensor(306, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:10.082] dice before refine 0.18416762351989746 and after 0.3183121383190155, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 21874 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8055, fp: 0.0278, label 0: tensor(172), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19316 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6575, fp: 0.0783, label 0: tensor(413), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16590 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5665, fp: 0.0655, label 0: tensor(346), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14229 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4490, fp: 0.0930, label 0: tensor(535), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12348 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3672, fp: 0.1031, label 0: tensor(437), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11675 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2789, fp: 0.1658, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11089 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1925, fp: 0.2299, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9888 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1259, fp: 0.2508, label 0: tensor(506), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9303 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0719, fp: 0.2825, label 0: tensor(506), label 1: tensor(381) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9111 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0504, fp: 0.2966, label 0: tensor(509), label 1: tensor(263) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:20.269] dice before refine 0.6241878867149353 and after 0.8599547147750854, label 0: tensor(509, device='cuda:0'), label 1: tensor(263, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.6494757289236243 +[22:57:20.860] epoch: 4/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.6494757289236243 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(141) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:21.372] dice before refine 0.5949477553367615 and after 0.7597402334213257, label 0: tensor(0, device='cuda:0'), label 1: tensor(141, device='cuda:0') +num_clicks 10 points_length: 1258 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.3658, fp: 0.0354, label 0: tensor(44), label 1: tensor(220) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1191 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.0348, fp: 0.3450, label 0: tensor(149), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 956 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0297, fp: 0.2752, label 0: tensor(165), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 801 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0332, fp: 0.2223, label 0: tensor(148), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 647 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0427, fp: 0.1636, label 0: tensor(155), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 617 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.0462, fp: 0.1505, label 0: tensor(103), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 687 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.0300, fp: 0.1891, label 0: tensor(106), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 609 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0383, fp: 0.1559, label 0: tensor(107), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 714 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0239, fp: 0.2038, label 0: tensor(149), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 561 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0402, fp: 0.1387, label 0: tensor(156), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:25.747] dice before refine 0.7637022733688354 and after 0.9106982350349426, label 0: tensor(156, device='cuda:0'), label 1: tensor(59, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(224) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:26.133] dice before refine 0.5957018136978149 and after 0.8067050576210022, label 0: tensor(0, device='cuda:0'), label 1: tensor(224, device='cuda:0') +num_clicks 10 points_length: 1107 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2634, fp: 0.0896, label 0: tensor(119), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1027 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0666, fp: 0.2608, label 0: tensor(126), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 948 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0214, fp: 0.2809, label 0: tensor(214), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 750 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0274, fp: 0.2117, label 0: tensor(135), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 742 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0277, fp: 0.2089, label 0: tensor(199), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 660 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0379, fp: 0.1725, label 0: tensor(98), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 734 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0246, fp: 0.2095, label 0: tensor(153), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 639 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0325, fp: 0.1712, label 0: tensor(157), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 641 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0332, fp: 0.1712, label 0: tensor(157), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 615 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0319, fp: 0.1642, label 0: tensor(111), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:30.639] dice before refine 0.7714200019836426 and after 0.9075907468795776, label 0: tensor(111, device='cuda:0'), label 1: tensor(39, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:31.016] dice before refine 0.6996756196022034 and after 0.7322344183921814, label 0: tensor(0, device='cuda:0'), label 1: tensor(133, device='cuda:0') +num_clicks 10 points_length: 1462 dynamic_size: 10 +filter out voxels: 55 +First batch: fn: 0.3626, fp: 0.1036, label 0: tensor(84), label 1: tensor(230) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1110 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0344, fp: 0.3195, label 0: tensor(269), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 894 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0236, fp: 0.2615, label 0: tensor(192), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 734 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0255, fp: 0.2085, label 0: tensor(155), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 683 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0316, fp: 0.1862, label 0: tensor(115), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 720 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0246, fp: 0.2050, label 0: tensor(192), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 644 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0277, fp: 0.1776, label 0: tensor(125), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 643 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0328, fp: 0.1722, label 0: tensor(100), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 678 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0271, fp: 0.1891, label 0: tensor(129), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 622 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0268, fp: 0.1716, label 0: tensor(143), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:35.630] dice before refine 0.7958613038063049 and after 0.9105302691459656, label 0: tensor(143, device='cuda:0'), label 1: tensor(38, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(228) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:36.013] dice before refine 0.5188981294631958 and after 0.810960590839386, label 0: tensor(0, device='cuda:0'), label 1: tensor(228, device='cuda:0') +num_clicks 10 points_length: 1228 dynamic_size: 10 +filter out voxels: 368 +First batch: fn: 0.1601, fp: 0.2315, label 0: tensor(110), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 900 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.0501, fp: 0.2369, label 0: tensor(191), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 802 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0379, fp: 0.2178, label 0: tensor(150), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 765 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0306, fp: 0.2133, label 0: tensor(195), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 708 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0332, fp: 0.1926, label 0: tensor(158), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 665 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0402, fp: 0.1719, label 0: tensor(115), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 643 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0281, fp: 0.1770, label 0: tensor(105), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 753 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0156, fp: 0.2245, label 0: tensor(128), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 644 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0217, fp: 0.1837, label 0: tensor(117), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 618 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0249, fp: 0.1722, label 0: tensor(167), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:40.494] dice before refine 0.6098792552947998 and after 0.912972092628479, label 0: tensor(167, device='cuda:0'), label 1: tensor(70, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.8874555067582564 +[22:57:40.933] epoch: 4/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.8874555067582564 stich left and right side (total size): 1 +num_clicks 10 points_length: 19676 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:41.478] dice before refine 0.0 and after 0.17650863528251648, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 17822 dynamic_size: 10 +filter out voxels: 51 +First batch: fn: 0.9029, fp: 0.0028, label 0: tensor(5), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12910 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.6318, fp: 0.0243, label 0: tensor(152), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9846 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.4079, fp: 0.0925, label 0: tensor(291), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9334 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2763, fp: 0.1981, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8412 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2151, fp: 0.2124, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7438 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1533, fp: 0.2247, label 0: tensor(509), label 1: tensor(424) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7020 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1312, fp: 0.2256, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6461 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.0922, fp: 0.2362, label 0: tensor(508), label 1: tensor(277) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5852 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1047, fp: 0.1927, label 0: tensor(506), label 1: tensor(268) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5503 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.0955, fp: 0.1841, label 0: tensor(506), label 1: tensor(283) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:50.486] dice before refine 0.5667110085487366 and after 0.8720231652259827, label 0: tensor(506, device='cuda:0'), label 1: tensor(283, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 30548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:57:50.995] dice before refine 0.0 and after 0.028122998774051666, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 30342 dynamic_size: 10 +filter out voxels: 233 +First batch: fn: 0.9856, fp: 0.0076, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28862 dynamic_size: 10 +filter out voxels: 576 +First batch: fn: 0.9239, fp: 0.0209, label 0: tensor(31), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25641 dynamic_size: 10 +filter out voxels: 1474 +First batch: fn: 0.7843, fp: 0.0551, label 0: tensor(107), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20976 dynamic_size: 10 +filter out voxels: 943 +First batch: fn: 0.6217, fp: 0.0649, label 0: tensor(278), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12676 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.3457, fp: 0.0693, label 0: tensor(453), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10368 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.2181, fp: 0.1213, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8671 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.1379, fp: 0.1459, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7363 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.0877, fp: 0.1534, label 0: tensor(500), label 1: tensor(469) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7187 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.0602, fp: 0.1751, label 0: tensor(509), label 1: tensor(363) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6511 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.0560, fp: 0.1572, label 0: tensor(506), label 1: tensor(314) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:00.188] dice before refine 0.6330263018608093 and after 0.9021450281143188, label 0: tensor(506, device='cuda:0'), label 1: tensor(314, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 23425 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:00.657] dice before refine 0.4095904231071472 and after 0.5125540494918823, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 15667 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6484, fp: 0.0204, label 0: tensor(131), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11191 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3699, fp: 0.1078, label 0: tensor(473), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8293 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.2027, fp: 0.1513, label 0: tensor(469), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6327 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.0947, fp: 0.1754, label 0: tensor(507), label 1: tensor(280) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5947 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.0640, fp: 0.1899, label 0: tensor(507), label 1: tensor(289) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5365 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.0390, fp: 0.1901, label 0: tensor(507), label 1: tensor(232) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4972 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.0270, fp: 0.1852, label 0: tensor(510), label 1: tensor(199) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4943 dynamic_size: 10 +filter out voxels: 35 +First batch: fn: 0.0193, fp: 0.1918, label 0: tensor(508), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4618 dynamic_size: 10 +filter out voxels: 36 +First batch: fn: 0.0208, fp: 0.1763, label 0: tensor(509), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4621 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.0200, fp: 0.1773, label 0: tensor(510), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:09.317] dice before refine 0.768978476524353 and after 0.9109960198402405, label 0: tensor(510, device='cuda:0'), label 1: tensor(178, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25823 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:09.801] dice before refine 0.5086715817451477 and after 0.4915134608745575, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 18005 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6630, fp: 0.0342, label 0: tensor(253), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14117 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4007, fp: 0.1460, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10012 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2319, fp: 0.1558, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6639 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0864, fp: 0.1707, label 0: tensor(509), label 1: tensor(446) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6459 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0308, fp: 0.2193, label 0: tensor(509), label 1: tensor(218) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6097 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0209, fp: 0.2152, label 0: tensor(509), label 1: tensor(214) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6016 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0138, fp: 0.2191, label 0: tensor(510), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5472 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0151, fp: 0.1968, label 0: tensor(510), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4927 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0168, fp: 0.1740, label 0: tensor(509), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4792 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0168, fp: 0.1688, label 0: tensor(510), label 1: tensor(160) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:18.878] dice before refine 0.7824868559837341 and after 0.9159559607505798, label 0: tensor(510, device='cuda:0'), label 1: tensor(160, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 69252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:19.466] dice before refine 0.4122371971607208 and after 0.2682875096797943, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 58687 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.8446, fp: 0.0028, label 0: tensor(78), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50421 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7094, fp: 0.0187, label 0: tensor(376), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47546 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6637, fp: 0.0228, label 0: tensor(433), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43744 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6093, fp: 0.0224, label 0: tensor(329), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37551 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5133, fp: 0.0290, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32601 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4445, fp: 0.0263, label 0: tensor(442), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29927 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3997, fp: 0.0324, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25670 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3320, fp: 0.0386, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23901 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2975, fp: 0.0476, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22003 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.2711, fp: 0.0466, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:29.949] dice before refine 0.7609255909919739 and after 0.8354547023773193, label 0: tensor(501, device='cuda:0'), label 1: tensor(509, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 92139 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:30.567] dice before refine 0.45796865224838257 and after 0.28754353523254395, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 77117 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8311, fp: 0.0059, label 0: tensor(98), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 64118 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6814, fp: 0.0144, label 0: tensor(197), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56148 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5951, fp: 0.0143, label 0: tensor(225), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48220 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5117, fp: 0.0117, label 0: tensor(237), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45486 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4830, fp: 0.0106, label 0: tensor(324), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 43190 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4571, fp: 0.0117, label 0: tensor(368), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38455 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4021, fp: 0.0152, label 0: tensor(331), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35214 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3633, fp: 0.0189, label 0: tensor(473), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34466 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3473, fp: 0.0267, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32349 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3283, fp: 0.0228, label 0: tensor(506), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:40.532] dice before refine 0.7029172778129578 and after 0.804485023021698, label 0: tensor(506, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 10350 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:40.982] dice before refine 0.21511627733707428 and after 0.3991531729698181, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 10501 dynamic_size: 10 +filter out voxels: 1028 +First batch: fn: 0.6630, fp: 0.3516, label 0: tensor(370), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10470 dynamic_size: 10 +filter out voxels: 1420 +First batch: fn: 0.2968, fp: 0.7148, label 0: tensor(508), label 1: tensor(409) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8185 dynamic_size: 10 +filter out voxels: 1082 +First batch: fn: 0.1535, fp: 0.6373, label 0: tensor(508), label 1: tensor(230) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4749 dynamic_size: 10 +filter out voxels: 337 +First batch: fn: 0.0936, fp: 0.3652, label 0: tensor(509), label 1: tensor(185) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3539 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0647, fp: 0.2772, label 0: tensor(498), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3211 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0563, fp: 0.2539, label 0: tensor(543), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2922 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0533, fp: 0.2290, label 0: tensor(527), label 1: tensor(157) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2564 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0521, fp: 0.1957, label 0: tensor(518), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2634 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0661, fp: 0.1884, label 0: tensor(469), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2394 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0512, fp: 0.1801, label 0: tensor(390), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:49.780] dice before refine 0.6223257780075073 and after 0.892562747001648, label 0: tensor(390, device='cuda:0'), label 1: tensor(132, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 9566 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:50.212] dice before refine 0.0 and after 0.43666890263557434, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 7583 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.6928, fp: 0.0999, label 0: tensor(249), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4447 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3006, fp: 0.1642, label 0: tensor(433), label 1: tensor(373) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3927 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1275, fp: 0.2830, label 0: tensor(507), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3314 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1058, fp: 0.2406, label 0: tensor(381), label 1: tensor(203) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3097 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0594, fp: 0.2644, label 0: tensor(509), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2705 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0605, fp: 0.2222, label 0: tensor(435), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2648 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0483, fp: 0.2285, label 0: tensor(480), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2390 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0545, fp: 0.1954, label 0: tensor(339), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2348 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0468, fp: 0.1986, label 0: tensor(375), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2194 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0463, fp: 0.1830, label 0: tensor(302), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:57.860] dice before refine 0.6525707840919495 and after 0.8954315781593323, label 0: tensor(302, device='cuda:0'), label 1: tensor(99, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.7215645773844286 +[22:58:58.392] epoch: 4/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.7215645773844286 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:58:58.903] dice before refine 0.0 and after 0.060453400015830994, label 0: tensor(0, device='cuda:0'), label 1: tensor(37, device='cuda:0') +num_clicks 10 points_length: 1119 dynamic_size: 10 +filter out voxels: 1017 +First batch: fn: 0.7188, fp: 8.0234, label 0: tensor(15), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 341 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.2188, fp: 2.4453, label 0: tensor(43), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 208 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2656, fp: 1.3594, label 0: tensor(20), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 190 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2734, fp: 1.2109, label 0: tensor(38), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 131 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4531, fp: 0.5703, label 0: tensor(24), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 124 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4297, fp: 0.5391, label 0: tensor(33), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 105 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6641, fp: 0.1562, label 0: tensor(5), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 138 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.3203, fp: 0.7578, label 0: tensor(29), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4922, fp: 0.4375, label 0: tensor(23), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 164 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2422, fp: 1.0391, label 0: tensor(51), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:59:01.986] dice before refine 0.0 and after 0.5905511975288391, label 0: tensor(51, device='cuda:0'), label 1: tensor(5, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:59:02.345] dice before refine 0.003484320593997836 and after 0.056338027119636536, label 0: tensor(0, device='cuda:0'), label 1: tensor(21, device='cuda:0') +num_clicks 10 points_length: 335 dynamic_size: 10 +filter out voxels: 217 +First batch: fn: 0.9219, fp: 1.6953, label 0: tensor(9), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 339 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2734, fp: 2.3750, label 0: tensor(43), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4453, fp: 0.6484, label 0: tensor(30), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 281 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1875, fp: 2.0078, label 0: tensor(44), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 261 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2422, fp: 1.7969, label 0: tensor(46), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 131 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4844, fp: 0.5391, label 0: tensor(10), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 198 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1719, fp: 1.3750, label 0: tensor(26), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 111 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5469, fp: 0.3203, label 0: tensor(8), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 265 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0781, fp: 1.9922, label 0: tensor(82), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 142 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2734, fp: 0.8359, label 0: tensor(30), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[22:59:05.494] dice before refine 0.0 and after 0.450549453496933, label 0: tensor(30, device='cuda:0'), label 1: tensor(7, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.4345551255074414 +[22:59:06.018] epoch: 4/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.4345551255074414 stich left and right side (total size): 1 +[22:59:06.018] - Val metrics mean dice: 0.5652097064909364 +Checkpoint Directory exists! +[22:59:06.867] - Val metrics best mean dice: 0.5652097064909364 at epoch 4 +num_clicks 50 points_length: 179 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5365551114082336 and after 0.2933272123336792 +num_clicks 50 points_length: 544 dynamic_size: 50 +filter out voxels: 154 +filter out voxels: 1925 +First batch: fn: 0.0615, fp: 2.9777, label 0: tensor(131), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.575405478477478 and after 0.4806406795978546 +num_clicks 50 points_length: 168 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 2038 +First batch: fn: 0.1788, fp: 0.7598, label 0: tensor(49), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.415361225605011 and after 0.4927641451358795 +num_clicks 50 points_length: 132 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 1898 +First batch: fn: 0.2123, fp: 0.5251, label 0: tensor(61), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4518933594226837 and after 0.5256415605545044 +num_clicks 50 points_length: 113 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 2171 +First batch: fn: 0.2626, fp: 0.3687, label 0: tensor(60), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4937901198863983 and after 0.5058150291442871 +num_clicks 50 points_length: 118 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 2112 +First batch: fn: 0.2011, fp: 0.4581, label 0: tensor(41), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41175198554992676 and after 0.5142287015914917 +num_clicks 50 points_length: 129 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 2426 +First batch: fn: 0.1899, fp: 0.5307, label 0: tensor(37), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44186148047447205 and after 0.5102015733718872 +num_clicks 50 points_length: 118 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 2260 +First batch: fn: 0.2067, fp: 0.4525, label 0: tensor(51), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4361776113510132 and after 0.5527417659759521 +num_clicks 50 points_length: 109 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 2458 +First batch: fn: 0.2123, fp: 0.3966, label 0: tensor(41), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44057682156562805 and after 0.532015323638916 +num_clicks 50 points_length: 108 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 1746 +First batch: fn: 0.2235, fp: 0.3799, label 0: tensor(45), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42510947585105896 and after 0.5564573407173157 +num_clicks 50 points_length: 109 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 1896 +First batch: fn: 0.2123, fp: 0.3966, label 0: tensor(54), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4668666124343872 and after 0.534101128578186 +epoch: 5/20, iter: 0/42: loss:2.393: rank:-1 +[22:59:26.809] epoch: 5/20, iter: 0/42: loss:2.393: rank:-1 +num_clicks 50 points_length: 572 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42474299669265747 and after 0.2658301293849945 +num_clicks 50 points_length: 1665 dynamic_size: 27 +filter out voxels: 1052 +filter out voxels: 0 +First batch: fn: 0.0647, fp: 2.8462, label 0: tensor(165), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5233651399612427 and after 0.44501549005508423 +num_clicks 50 points_length: 470 dynamic_size: 8 +filter out voxels: 5 +filter out voxels: 0 +First batch: fn: 0.0332, fp: 0.7885, label 0: tensor(96), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.584200382232666 and after 0.502968966960907 +num_clicks 50 points_length: 304 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0455, fp: 0.4860, label 0: tensor(102), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5795406103134155 and after 0.544628381729126 +num_clicks 50 points_length: 208 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0699, fp: 0.2937, label 0: tensor(59), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5072687864303589 and after 0.5528640747070312 +num_clicks 50 points_length: 211 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0472, fp: 0.3217, label 0: tensor(95), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5215640068054199 and after 0.5640142560005188 +num_clicks 50 points_length: 240 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0280, fp: 0.3916, label 0: tensor(60), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.541961669921875 and after 0.5699247717857361 +num_clicks 50 points_length: 230 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0227, fp: 0.3794, label 0: tensor(86), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5352746248245239 and after 0.5821554064750671 +num_clicks 50 points_length: 218 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0262, fp: 0.3549, label 0: tensor(108), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5582948923110962 and after 0.5972362160682678 +num_clicks 50 points_length: 204 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0385, fp: 0.3182, label 0: tensor(86), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5693516731262207 and after 0.6080989837646484 +num_clicks 50 points_length: 195 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0367, fp: 0.3042, label 0: tensor(89), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5703324675559998 and after 0.6190918684005737 +epoch: 5/20, iter: 1/42: loss:2.2428: rank:-1 +[22:59:37.915] epoch: 5/20, iter: 1/42: loss:2.2428: rank:-1 +num_clicks 50 points_length: 1771 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17605602741241455 and after 0.25422203540802 +num_clicks 50 points_length: 2591 dynamic_size: 11 +filter out voxels: 176 +filter out voxels: 3036 +First batch: fn: 0.2592, fp: 1.2038, label 0: tensor(407), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14617224037647247 and after 0.3204641342163086 +num_clicks 50 points_length: 1849 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 1086 +First batch: fn: 0.1621, fp: 0.8820, label 0: tensor(413), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15146367251873016 and after 0.3515097200870514 +num_clicks 50 points_length: 1438 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 1874 +First batch: fn: 0.1553, fp: 0.6567, label 0: tensor(339), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14397495985031128 and after 0.3733662962913513 +num_clicks 50 points_length: 1203 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 3398 +First batch: fn: 0.1536, fp: 0.5257, label 0: tensor(261), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14553046226501465 and after 0.38331976532936096 +num_clicks 50 points_length: 1095 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 6022 +First batch: fn: 0.1395, fp: 0.4788, label 0: tensor(298), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1476835012435913 and after 0.3930283188819885 +num_clicks 50 points_length: 996 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 8782 +First batch: fn: 0.1400, fp: 0.4224, label 0: tensor(292), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14772097766399384 and after 0.39575111865997314 +num_clicks 50 points_length: 1053 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 9518 +First batch: fn: 0.1158, fp: 0.4788, label 0: tensor(282), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14739328622817993 and after 0.4042207598686218 +num_clicks 50 points_length: 996 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 9848 +First batch: fn: 0.1174, fp: 0.4449, label 0: tensor(270), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15036258101463318 and after 0.4078110158443451 +num_clicks 50 points_length: 973 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 10217 +First batch: fn: 0.1141, fp: 0.4353, label 0: tensor(264), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14642727375030518 and after 0.4071660041809082 +num_clicks 50 points_length: 1024 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 10502 +First batch: fn: 0.0988, fp: 0.4794, label 0: tensor(257), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14563053846359253 and after 0.4104952812194824 +epoch: 5/20, iter: 2/42: loss:4.9151: rank:-1 +[22:59:56.162] epoch: 5/20, iter: 2/42: loss:4.9151: rank:-1 +num_clicks 50 points_length: 11006 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(398) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5012820363044739 and after 0.4171014428138733 +num_clicks 50 points_length: 11907 dynamic_size: 9 +filter out voxels: 1950 +filter out voxels: 0 +First batch: fn: 0.4877, fp: 0.5941, label 0: tensor(83), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.578180193901062 and after 0.5996543169021606 +num_clicks 50 points_length: 7066 dynamic_size: 36 +filter out voxels: 538 +filter out voxels: 0 +First batch: fn: 0.1310, fp: 0.5110, label 0: tensor(473), label 1: tensor(230) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6146541833877563 and after 0.6519138813018799 +num_clicks 50 points_length: 5949 dynamic_size: 36 +filter out voxels: 11 +filter out voxels: 0 +First batch: fn: 0.0438, fp: 0.4967, label 0: tensor(531), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6269994974136353 and after 0.6897363662719727 +num_clicks 50 points_length: 5067 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0213, fp: 0.4391, label 0: tensor(592), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6355106830596924 and after 0.7229272127151489 +num_clicks 50 points_length: 4164 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0175, fp: 0.3608, label 0: tensor(537), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6562660932540894 and after 0.7561367750167847 +num_clicks 50 points_length: 3132 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0338, fp: 0.2508, label 0: tensor(557), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6526635885238647 and after 0.7682217955589294 +num_clicks 50 points_length: 2885 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0273, fp: 0.2348, label 0: tensor(453), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6653409600257874 and after 0.7854684591293335 +num_clicks 50 points_length: 2539 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0283, fp: 0.2023, label 0: tensor(471), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6674701571464539 and after 0.8089627623558044 +num_clicks 50 points_length: 2210 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0298, fp: 0.1710, label 0: tensor(357), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6726832389831543 and after 0.8150789141654968 +num_clicks 50 points_length: 2337 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 14 +First batch: fn: 0.0251, fp: 0.1873, label 0: tensor(399), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6828806400299072 and after 0.8299850225448608 +epoch: 5/20, iter: 3/42: loss:1.925: rank:-1 +[23:00:16.253] epoch: 5/20, iter: 3/42: loss:1.925: rank:-1 +num_clicks 50 points_length: 924 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3784372806549072 and after 0.23655885457992554 +num_clicks 50 points_length: 15479 dynamic_size: 28 +filter out voxels: 1370 +filter out voxels: 14984 +First batch: fn: 0.7350, fp: 0.0269, label 0: tensor(1), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.370023250579834 and after 0.2660488486289978 +num_clicks 50 points_length: 22637 dynamic_size: 25 +filter out voxels: 1086 +filter out voxels: 22173 +First batch: fn: 0.6934, fp: 0.0304, label 0: tensor(1), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3626321852207184 and after 0.2769436240196228 +num_clicks 50 points_length: 22287 dynamic_size: 17 +filter out voxels: 1424 +filter out voxels: 22023 +First batch: fn: 0.6655, fp: 0.0506, label 0: tensor(1), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3596230745315552 and after 0.2743469178676605 +num_clicks 50 points_length: 25874 dynamic_size: 12 +filter out voxels: 1654 +filter out voxels: 25603 +First batch: fn: 0.6579, fp: 0.0668, label 0: tensor(0), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3592177629470825 and after 0.27580389380455017 +num_clicks 50 points_length: 27027 dynamic_size: 22 +filter out voxels: 1749 +filter out voxels: 26771 +First batch: fn: 0.6473, fp: 0.0835, label 0: tensor(1), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3531266748905182 and after 0.2722199261188507 +num_clicks 50 points_length: 26092 dynamic_size: 27 +filter out voxels: 1831 +filter out voxels: 25875 +First batch: fn: 0.6454, fp: 0.1160, label 0: tensor(7), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34779730439186096 and after 0.27158504724502563 +num_clicks 50 points_length: 27854 dynamic_size: 6 +filter out voxels: 1703 +filter out voxels: 27622 +First batch: fn: 0.6407, fp: 0.1273, label 0: tensor(2), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34980934858322144 and after 0.27456793189048767 +num_clicks 50 points_length: 27183 dynamic_size: 40 +filter out voxels: 1705 +filter out voxels: 26958 +First batch: fn: 0.6320, fp: 0.1395, label 0: tensor(6), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35052162408828735 and after 0.28747645020484924 +num_clicks 50 points_length: 27288 dynamic_size: 1 +filter out voxels: 1582 +filter out voxels: 27069 +First batch: fn: 0.6051, fp: 0.1409, label 0: tensor(0), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35253602266311646 and after 0.29331961274147034 +num_clicks 50 points_length: 27756 dynamic_size: 3 +filter out voxels: 1529 +filter out voxels: 27539 +First batch: fn: 0.5877, fp: 0.1538, label 0: tensor(0), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3520975708961487 and after 0.2970704138278961 +epoch: 5/20, iter: 4/42: loss:3.1122: rank:-1 +[23:00:26.641] epoch: 5/20, iter: 4/42: loss:3.1122: rank:-1 +num_clicks 50 points_length: 9488 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(217) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44627267122268677 and after 0.4165741205215454 +num_clicks 50 points_length: 8679 dynamic_size: 32 +filter out voxels: 80 +filter out voxels: 4728 +First batch: fn: 0.8685, fp: 0.0224, label 0: tensor(189), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4954180121421814 and after 0.5324802398681641 +num_clicks 50 points_length: 5984 dynamic_size: 2 +filter out voxels: 15 +filter out voxels: 3486 +First batch: fn: 0.8086, fp: 0.0201, label 0: tensor(16), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5599009394645691 and after 0.576409637928009 +num_clicks 50 points_length: 4596 dynamic_size: 49 +filter out voxels: 167 +filter out voxels: 2098 +First batch: fn: 0.7810, fp: 0.0220, label 0: tensor(2), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5807578563690186 and after 0.6250291466712952 +num_clicks 50 points_length: 3306 dynamic_size: 1 +filter out voxels: 110 +filter out voxels: 1039 +First batch: fn: 0.7431, fp: 0.0221, label 0: tensor(0), label 1: tensor(498) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6264336109161377 and after 0.656252384185791 +num_clicks 50 points_length: 2416 dynamic_size: 7 +filter out voxels: 70 +filter out voxels: 337 +First batch: fn: 0.7224, fp: 0.0201, label 0: tensor(0), label 1: tensor(291) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6629829406738281 and after 0.6854132413864136 +num_clicks 50 points_length: 1892 dynamic_size: 35 +filter out voxels: 63 +filter out voxels: 0 +First batch: fn: 0.6905, fp: 0.0253, label 0: tensor(0), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6703468561172485 and after 0.7040172815322876 +num_clicks 50 points_length: 1849 dynamic_size: 42 +filter out voxels: 21 +filter out voxels: 0 +First batch: fn: 0.6598, fp: 0.0230, label 0: tensor(1), label 1: tensor(464) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6795764565467834 and after 0.725717306137085 +num_clicks 50 points_length: 1807 dynamic_size: 11 +filter out voxels: 7 +filter out voxels: 0 +First batch: fn: 0.6216, fp: 0.0224, label 0: tensor(0), label 1: tensor(403) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6848204135894775 and after 0.7327681183815002 +num_clicks 50 points_length: 1779 dynamic_size: 3 +filter out voxels: 3 +filter out voxels: 0 +First batch: fn: 0.6097, fp: 0.0211, label 0: tensor(0), label 1: tensor(369) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6880167722702026 and after 0.738287091255188 +num_clicks 50 points_length: 1825 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5943, fp: 0.0280, label 0: tensor(0), label 1: tensor(433) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6984862089157104 and after 0.7626969814300537 +epoch: 5/20, iter: 5/42: loss:1.9817: rank:-1 +[23:00:43.309] epoch: 5/20, iter: 5/42: loss:1.9817: rank:-1 +num_clicks 50 points_length: 189872 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3731094002723694 and after 0.24023425579071045 +num_clicks 50 points_length: 148581 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9347, fp: 0.0001, label 0: tensor(17), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4733395576477051 and after 0.3170974552631378 +num_clicks 50 points_length: 143976 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8608, fp: 0.0001, label 0: tensor(10), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4974815249443054 and after 0.3473874032497406 +num_clicks 50 points_length: 141178 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8330, fp: 0.0007, label 0: tensor(34), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5014683604240417 and after 0.38946545124053955 +num_clicks 50 points_length: 137741 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7927, fp: 0.0003, label 0: tensor(27), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5151393413543701 and after 0.4107261896133423 +num_clicks 50 points_length: 134453 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7781, fp: 0.0002, label 0: tensor(23), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5277403593063354 and after 0.43163055181503296 +num_clicks 50 points_length: 131312 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7606, fp: 0.0002, label 0: tensor(14), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5375837087631226 and after 0.4610261917114258 +num_clicks 50 points_length: 127407 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7322, fp: 0.0006, label 0: tensor(64), label 1: tensor(550) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5300339460372925 and after 0.4819907546043396 +num_clicks 50 points_length: 124537 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7106, fp: 0.0018, label 0: tensor(103), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5242244005203247 and after 0.5049013495445251 +num_clicks 50 points_length: 121618 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6860, fp: 0.0015, label 0: tensor(84), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5285592079162598 and after 0.5247301459312439 +num_clicks 50 points_length: 119044 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6640, fp: 0.0011, label 0: tensor(103), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5319445133209229 and after 0.5504962205886841 +epoch: 5/20, iter: 6/42: loss:3.1871: rank:-1 +[23:01:04.066] epoch: 5/20, iter: 6/42: loss:3.1871: rank:-1 +num_clicks 50 points_length: 192 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24985399842262268 and after 0.23614244163036346 +num_clicks 50 points_length: 6270 dynamic_size: 15 +filter out voxels: 4 +filter out voxels: 6034 +First batch: fn: 0.7345, fp: 0.0033, label 0: tensor(0), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2904866337776184 and after 0.24073655903339386 +num_clicks 50 points_length: 12322 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 12186 +First batch: fn: 0.7042, fp: 0.0041, label 0: tensor(0), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2934158742427826 and after 0.24059388041496277 +num_clicks 50 points_length: 15190 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 15116 +First batch: fn: 0.6965, fp: 0.0030, label 0: tensor(0), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2916406989097595 and after 0.24232745170593262 +num_clicks 50 points_length: 18000 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 17901 +First batch: fn: 0.6955, fp: 0.0032, label 0: tensor(0), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29306089878082275 and after 0.24380522966384888 +num_clicks 50 points_length: 17920 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 17868 +First batch: fn: 0.6928, fp: 0.0029, label 0: tensor(0), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.293165385723114 and after 0.24312607944011688 +num_clicks 50 points_length: 18265 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 18212 +First batch: fn: 0.6932, fp: 0.0031, label 0: tensor(0), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29386258125305176 and after 0.2462954819202423 +num_clicks 50 points_length: 18726 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 18663 +First batch: fn: 0.6881, fp: 0.0028, label 0: tensor(0), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29334133863449097 and after 0.24684683978557587 +num_clicks 50 points_length: 18305 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 18246 +First batch: fn: 0.6871, fp: 0.0031, label 0: tensor(0), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2926490902900696 and after 0.24752144515514374 +num_clicks 50 points_length: 18122 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 18064 +First batch: fn: 0.6861, fp: 0.0031, label 0: tensor(0), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29367631673812866 and after 0.24836300313472748 +num_clicks 50 points_length: 18430 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 18368 +First batch: fn: 0.6844, fp: 0.0030, label 0: tensor(0), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29315122961997986 and after 0.24773916602134705 +epoch: 5/20, iter: 7/42: loss:3.8375: rank:-1 +[23:01:15.907] epoch: 5/20, iter: 7/42: loss:3.8375: rank:-1 +num_clicks 50 points_length: 11626 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(534) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5430901646614075 and after 0.6046571731567383 +num_clicks 50 points_length: 4198 dynamic_size: 14 +filter out voxels: 3191 +filter out voxels: 187 +First batch: fn: 0.7188, fp: 0.2415, label 0: tensor(166), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5741938352584839 and after 0.6656305193901062 +num_clicks 50 points_length: 4252 dynamic_size: 44 +filter out voxels: 2079 +filter out voxels: 25 +First batch: fn: 0.5708, fp: 0.3347, label 0: tensor(55), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6052410006523132 and after 0.7048830986022949 +num_clicks 50 points_length: 3635 dynamic_size: 13 +filter out voxels: 1774 +filter out voxels: 4 +First batch: fn: 0.4988, fp: 0.3358, label 0: tensor(46), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6124995350837708 and after 0.7269532680511475 +num_clicks 50 points_length: 3231 dynamic_size: 40 +filter out voxels: 1476 +filter out voxels: 4 +First batch: fn: 0.4655, fp: 0.3192, label 0: tensor(110), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6284021139144897 and after 0.7554465532302856 +num_clicks 50 points_length: 2801 dynamic_size: 4 +filter out voxels: 1073 +filter out voxels: 4 +First batch: fn: 0.4170, fp: 0.3001, label 0: tensor(56), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6441793441772461 and after 0.7836427688598633 +num_clicks 50 points_length: 2619 dynamic_size: 47 +filter out voxels: 1022 +filter out voxels: 4 +First batch: fn: 0.3467, fp: 0.2990, label 0: tensor(45), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6628729701042175 and after 0.8138567805290222 +num_clicks 50 points_length: 2381 dynamic_size: 48 +filter out voxels: 894 +filter out voxels: 4 +First batch: fn: 0.2769, fp: 0.2815, label 0: tensor(36), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6896799802780151 and after 0.837638258934021 +num_clicks 50 points_length: 2384 dynamic_size: 40 +filter out voxels: 829 +filter out voxels: 3 +First batch: fn: 0.2082, fp: 0.2674, label 0: tensor(21), label 1: tensor(494) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6992722749710083 and after 0.8521761894226074 +num_clicks 50 points_length: 2324 dynamic_size: 5 +filter out voxels: 682 +filter out voxels: 2 +First batch: fn: 0.1695, fp: 0.2561, label 0: tensor(56), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7150799632072449 and after 0.8663632273674011 +num_clicks 50 points_length: 2181 dynamic_size: 27 +filter out voxels: 950 +filter out voxels: 3 +First batch: fn: 0.1436, fp: 0.2335, label 0: tensor(10), label 1: tensor(489) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7185646891593933 and after 0.8777246475219727 +epoch: 5/20, iter: 8/42: loss:1.7075: rank:-1 +[23:01:35.490] epoch: 5/20, iter: 8/42: loss:1.7075: rank:-1 +num_clicks 50 points_length: 1463 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(199) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3032572567462921 and after 0.4145798981189728 +num_clicks 50 points_length: 9247 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 8322 +First batch: fn: 0.5635, fp: 0.0159, label 0: tensor(2), label 1: tensor(240) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4518316984176636 and after 0.5929336547851562 +num_clicks 50 points_length: 2489 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 1179 +First batch: fn: 0.5066, fp: 0.0216, label 0: tensor(0), label 1: tensor(272) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4876943528652191 and after 0.6807296872138977 +num_clicks 50 points_length: 1347 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 487 +First batch: fn: 0.4720, fp: 0.0216, label 0: tensor(0), label 1: tensor(189) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.49440425634384155 and after 0.7154033780097961 +num_clicks 50 points_length: 1072 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 413 +First batch: fn: 0.4443, fp: 0.0211, label 0: tensor(1), label 1: tensor(257) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5237311720848083 and after 0.7502970695495605 +num_clicks 50 points_length: 759 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 291 +First batch: fn: 0.4337, fp: 0.0206, label 0: tensor(0), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5255864858627319 and after 0.749130368232727 +num_clicks 50 points_length: 801 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 364 +First batch: fn: 0.4221, fp: 0.0197, label 0: tensor(0), label 1: tensor(156) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4843865633010864 and after 0.708594560623169 +num_clicks 50 points_length: 1283 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 844 +First batch: fn: 0.4088, fp: 0.0196, label 0: tensor(0), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5140333771705627 and after 0.7520456910133362 +num_clicks 50 points_length: 871 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 468 +First batch: fn: 0.3948, fp: 0.0195, label 0: tensor(1), label 1: tensor(175) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.498124897480011 and after 0.7440015077590942 +num_clicks 50 points_length: 1010 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 590 +First batch: fn: 0.3825, fp: 0.0191, label 0: tensor(1), label 1: tensor(216) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5145328044891357 and after 0.7832547426223755 +num_clicks 50 points_length: 681 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 277 +First batch: fn: 0.3703, fp: 0.0188, label 0: tensor(3), label 1: tensor(187) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5149639844894409 and after 0.7812259197235107 +epoch: 5/20, iter: 9/42: loss:2.6663: rank:-1 +[23:01:50.418] epoch: 5/20, iter: 9/42: loss:2.6663: rank:-1 +num_clicks 50 points_length: 7337 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2861010730266571 and after 0.3396874666213989 +num_clicks 50 points_length: 7213 dynamic_size: 32 +filter out voxels: 80 +filter out voxels: 25 +First batch: fn: 0.4775, fp: 0.1242, label 0: tensor(6), label 1: tensor(242) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26880592107772827 and after 0.569031834602356 +num_clicks 50 points_length: 5707 dynamic_size: 49 +filter out voxels: 75 +filter out voxels: 26 +First batch: fn: 0.3436, fp: 0.2547, label 0: tensor(24), label 1: tensor(400) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44348883628845215 and after 0.705915093421936 +num_clicks 50 points_length: 5784 dynamic_size: 40 +filter out voxels: 38 +filter out voxels: 0 +First batch: fn: 0.2523, fp: 0.2896, label 0: tensor(263), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5431580543518066 and after 0.7714612483978271 +num_clicks 50 points_length: 4943 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1588, fp: 0.2733, label 0: tensor(18), label 1: tensor(442) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5677853226661682 and after 0.7968904972076416 +num_clicks 50 points_length: 3951 dynamic_size: 43 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.0949, fp: 0.3409, label 0: tensor(43), label 1: tensor(458) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6036981344223022 and after 0.8250106573104858 +num_clicks 50 points_length: 2857 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0554, fp: 0.3769, label 0: tensor(46), label 1: tensor(358) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6150805950164795 and after 0.8347893953323364 +num_clicks 50 points_length: 2479 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0400, fp: 0.3964, label 0: tensor(107), label 1: tensor(206) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6455665826797485 and after 0.8479297161102295 +num_clicks 50 points_length: 2215 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0437, fp: 0.3546, label 0: tensor(63), label 1: tensor(266) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6323397159576416 and after 0.8507356643676758 +num_clicks 50 points_length: 2014 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0346, fp: 0.3803, label 0: tensor(37), label 1: tensor(184) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6368778944015503 and after 0.8553019165992737 +num_clicks 50 points_length: 1824 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0311, fp: 0.3878, label 0: tensor(80), label 1: tensor(204) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6458135843276978 and after 0.8613923788070679 +epoch: 5/20, iter: 10/42: loss:1.8081: rank:-1 +[23:02:05.985] epoch: 5/20, iter: 10/42: loss:1.8081: rank:-1 +num_clicks 50 points_length: 9016 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4247545599937439 and after 0.5235351324081421 +num_clicks 50 points_length: 5413 dynamic_size: 40 +filter out voxels: 14297 +filter out voxels: 94 +First batch: fn: 0.2645, fp: 4.8869, label 0: tensor(302), label 1: tensor(331) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45030471682548523 and after 0.5490964651107788 +num_clicks 50 points_length: 4678 dynamic_size: 22 +filter out voxels: 17408 +filter out voxels: 0 +First batch: fn: 0.1183, fp: 5.1376, label 0: tensor(393), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4635915458202362 and after 0.585563600063324 +num_clicks 50 points_length: 3682 dynamic_size: 46 +filter out voxels: 16199 +filter out voxels: 0 +First batch: fn: 0.0915, fp: 4.2374, label 0: tensor(438), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4654715061187744 and after 0.6023362278938293 +num_clicks 50 points_length: 3236 dynamic_size: 14 +filter out voxels: 16430 +filter out voxels: 0 +First batch: fn: 0.0522, fp: 4.0585, label 0: tensor(443), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4712439775466919 and after 0.625602662563324 +num_clicks 50 points_length: 2754 dynamic_size: 14 +filter out voxels: 16256 +filter out voxels: 0 +First batch: fn: 0.0333, fp: 3.5978, label 0: tensor(500), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47169843316078186 and after 0.6419222950935364 +num_clicks 50 points_length: 2479 dynamic_size: 31 +filter out voxels: 16208 +filter out voxels: 0 +First batch: fn: 0.0194, fp: 3.2977, label 0: tensor(455), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4762750267982483 and after 0.6555263996124268 +num_clicks 50 points_length: 2400 dynamic_size: 25 +filter out voxels: 15778 +filter out voxels: 0 +First batch: fn: 0.0196, fp: 2.9682, label 0: tensor(418), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48170581459999084 and after 0.6614203453063965 +num_clicks 50 points_length: 2338 dynamic_size: 7 +filter out voxels: 16009 +filter out voxels: 0 +First batch: fn: 0.0161, fp: 2.8628, label 0: tensor(405), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.49140530824661255 and after 0.6764029860496521 +num_clicks 50 points_length: 2303 dynamic_size: 33 +filter out voxels: 15138 +filter out voxels: 0 +First batch: fn: 0.0160, fp: 2.5424, label 0: tensor(444), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.498190701007843 and after 0.6827143430709839 +num_clicks 50 points_length: 2198 dynamic_size: 46 +filter out voxels: 14466 +filter out voxels: 0 +First batch: fn: 0.0231, fp: 2.4229, label 0: tensor(534), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4970044493675232 and after 0.6865755319595337 +epoch: 5/20, iter: 11/42: loss:2.4053: rank:-1 +[23:02:24.178] epoch: 5/20, iter: 11/42: loss:2.4053: rank:-1 +num_clicks 50 points_length: 3168 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3909955322742462 and after 0.43369174003601074 +num_clicks 50 points_length: 13051 dynamic_size: 35 +filter out voxels: 113 +filter out voxels: 33618 +First batch: fn: 0.2736, fp: 0.1669, label 0: tensor(114), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3764573037624359 and after 0.5139200687408447 +num_clicks 50 points_length: 9764 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 22756 +First batch: fn: 0.0966, fp: 0.2330, label 0: tensor(25), label 1: tensor(489) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3950648009777069 and after 0.5080960988998413 +num_clicks 50 points_length: 10006 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 28521 +First batch: fn: 0.0333, fp: 0.3044, label 0: tensor(29), label 1: tensor(287) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39055925607681274 and after 0.5251446962356567 +num_clicks 50 points_length: 11308 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 21126 +First batch: fn: 0.0105, fp: 0.3711, label 0: tensor(230), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45010098814964294 and after 0.5238952040672302 +num_clicks 50 points_length: 9306 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 25559 +First batch: fn: 0.0152, fp: 0.2989, label 0: tensor(169), label 1: tensor(170) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42972370982170105 and after 0.5302591919898987 +num_clicks 50 points_length: 9796 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 22685 +First batch: fn: 0.0084, fp: 0.3222, label 0: tensor(129), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4308590292930603 and after 0.5432690978050232 +num_clicks 50 points_length: 9655 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 19685 +First batch: fn: 0.0077, fp: 0.3182, label 0: tensor(106), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43156030774116516 and after 0.5360188484191895 +num_clicks 50 points_length: 9612 dynamic_size: 24 +filter out voxels: 1 +filter out voxels: 21697 +First batch: fn: 0.0068, fp: 0.3176, label 0: tensor(108), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44037482142448425 and after 0.5449100136756897 +num_clicks 50 points_length: 9018 dynamic_size: 16 +filter out voxels: 3 +filter out voxels: 20460 +First batch: fn: 0.0075, fp: 0.2969, label 0: tensor(108), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4319833219051361 and after 0.53767329454422 +num_clicks 50 points_length: 9070 dynamic_size: 35 +filter out voxels: 7 +filter out voxels: 22395 +First batch: fn: 0.0066, fp: 0.2995, label 0: tensor(144), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4393173158168793 and after 0.548382580280304 +epoch: 5/20, iter: 12/42: loss:2.601: rank:-1 +[23:02:39.338] epoch: 5/20, iter: 12/42: loss:2.601: rank:-1 +num_clicks 50 points_length: 16885 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7029373645782471 and after 0.699276328086853 +num_clicks 50 points_length: 7711 dynamic_size: 4 +filter out voxels: 725 +filter out voxels: 14035 +First batch: fn: 0.0508, fp: 0.4059, label 0: tensor(503), label 1: tensor(246) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7240573167800903 and after 0.7398036122322083 +num_clicks 50 points_length: 5979 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 10670 +First batch: fn: 0.0197, fp: 0.3344, label 0: tensor(494), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7733157873153687 and after 0.8000596761703491 +num_clicks 50 points_length: 5029 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 6154 +First batch: fn: 0.0125, fp: 0.2853, label 0: tensor(507), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7826184034347534 and after 0.8204301595687866 +num_clicks 50 points_length: 4293 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 5822 +First batch: fn: 0.0124, fp: 0.2419, label 0: tensor(506), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7876681089401245 and after 0.8392354249954224 +num_clicks 50 points_length: 3783 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 5752 +First batch: fn: 0.0145, fp: 0.2095, label 0: tensor(523), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7900103330612183 and after 0.8475158214569092 +num_clicks 50 points_length: 3426 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 5733 +First batch: fn: 0.0168, fp: 0.1861, label 0: tensor(475), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7845401763916016 and after 0.8500134944915771 +num_clicks 50 points_length: 3416 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 5780 +First batch: fn: 0.0136, fp: 0.1887, label 0: tensor(497), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7859674692153931 and after 0.8573291301727295 +num_clicks 50 points_length: 3012 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 5787 +First batch: fn: 0.0146, fp: 0.1638, label 0: tensor(528), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7982587814331055 and after 0.8702892065048218 +num_clicks 50 points_length: 2590 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 5696 +First batch: fn: 0.0182, fp: 0.1352, label 0: tensor(489), label 1: tensor(158) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.792695164680481 and after 0.8712905645370483 +num_clicks 50 points_length: 2732 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 5779 +First batch: fn: 0.0152, fp: 0.1466, label 0: tensor(463), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7969642877578735 and after 0.8750990629196167 +epoch: 5/20, iter: 13/42: loss:1.6089: rank:-1 +[23:02:58.677] epoch: 5/20, iter: 13/42: loss:1.6089: rank:-1 +num_clicks 50 points_length: 1909 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(274) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39256390929222107 and after 0.23830319941043854 +num_clicks 50 points_length: 75863 dynamic_size: 45 +filter out voxels: 4736 +filter out voxels: 97738 +First batch: fn: 0.6619, fp: 0.1420, label 0: tensor(143), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39172664284706116 and after 0.31469205021858215 +num_clicks 50 points_length: 61507 dynamic_size: 26 +filter out voxels: 4514 +filter out voxels: 54527 +First batch: fn: 0.5329, fp: 0.1189, label 0: tensor(79), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40959489345550537 and after 0.35139667987823486 +num_clicks 50 points_length: 55383 dynamic_size: 2 +filter out voxels: 5142 +filter out voxels: 47462 +First batch: fn: 0.4527, fp: 0.1343, label 0: tensor(89), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4172280430793762 and after 0.3821225166320801 +num_clicks 50 points_length: 48382 dynamic_size: 15 +filter out voxels: 4293 +filter out voxels: 46448 +First batch: fn: 0.3895, fp: 0.1232, label 0: tensor(54), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41900697350502014 and after 0.40399324893951416 +num_clicks 50 points_length: 43526 dynamic_size: 10 +filter out voxels: 4202 +filter out voxels: 45632 +First batch: fn: 0.3293, fp: 0.1320, label 0: tensor(32), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41466933488845825 and after 0.4219903349876404 +num_clicks 50 points_length: 37946 dynamic_size: 35 +filter out voxels: 4199 +filter out voxels: 46456 +First batch: fn: 0.2610, fp: 0.1412, label 0: tensor(12), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41825631260871887 and after 0.4389427602291107 +num_clicks 50 points_length: 33171 dynamic_size: 15 +filter out voxels: 4141 +filter out voxels: 45987 +First batch: fn: 0.2037, fp: 0.1479, label 0: tensor(5), label 1: tensor(363) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42077064514160156 and after 0.450265109539032 +num_clicks 50 points_length: 30700 dynamic_size: 44 +filter out voxels: 3832 +filter out voxels: 48538 +First batch: fn: 0.1763, fp: 0.1490, label 0: tensor(22), label 1: tensor(409) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4201565384864807 and after 0.4592638611793518 +num_clicks 50 points_length: 28023 dynamic_size: 28 +filter out voxels: 2804 +filter out voxels: 45476 +First batch: fn: 0.1573, fp: 0.1397, label 0: tensor(15), label 1: tensor(207) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4196312129497528 and after 0.46682319045066833 +num_clicks 50 points_length: 25311 dynamic_size: 42 +filter out voxels: 2337 +filter out voxels: 47995 +First batch: fn: 0.1341, fp: 0.1342, label 0: tensor(16), label 1: tensor(338) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42046818137168884 and after 0.4719215929508209 +epoch: 5/20, iter: 14/42: loss:3.0675: rank:-1 +[23:03:16.154] epoch: 5/20, iter: 14/42: loss:3.0675: rank:-1 +num_clicks 50 points_length: 7755 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(423) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5238746404647827 and after 0.3240489363670349 +num_clicks 50 points_length: 34601 dynamic_size: 44 +filter out voxels: 1287 +filter out voxels: 38085 +First batch: fn: 0.6953, fp: 0.0811, label 0: tensor(294), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47096675634384155 and after 0.46297353506088257 +num_clicks 50 points_length: 25730 dynamic_size: 8 +filter out voxels: 782 +filter out voxels: 27498 +First batch: fn: 0.5211, fp: 0.0563, label 0: tensor(86), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5173963308334351 and after 0.5277809500694275 +num_clicks 50 points_length: 21382 dynamic_size: 23 +filter out voxels: 746 +filter out voxels: 25951 +First batch: fn: 0.3771, fp: 0.1027, label 0: tensor(4), label 1: tensor(473) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5199402570724487 and after 0.5584406852722168 +num_clicks 50 points_length: 18943 dynamic_size: 33 +filter out voxels: 827 +filter out voxels: 26436 +First batch: fn: 0.2647, fp: 0.1603, label 0: tensor(11), label 1: tensor(330) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5216177105903625 and after 0.5794547200202942 +num_clicks 50 points_length: 17466 dynamic_size: 18 +filter out voxels: 727 +filter out voxels: 25044 +First batch: fn: 0.1923, fp: 0.1996, label 0: tensor(7), label 1: tensor(261) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.524590790271759 and after 0.5801714658737183 +num_clicks 50 points_length: 16910 dynamic_size: 45 +filter out voxels: 742 +filter out voxels: 26782 +First batch: fn: 0.1551, fp: 0.2244, label 0: tensor(28), label 1: tensor(269) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5230486392974854 and after 0.5953534841537476 +num_clicks 50 points_length: 14094 dynamic_size: 31 +filter out voxels: 728 +filter out voxels: 27472 +First batch: fn: 0.0958, fp: 0.2204, label 0: tensor(20), label 1: tensor(348) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5245731472969055 and after 0.6088905930519104 +num_clicks 50 points_length: 13409 dynamic_size: 48 +filter out voxels: 665 +filter out voxels: 25541 +First batch: fn: 0.0562, fp: 0.2447, label 0: tensor(36), label 1: tensor(330) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5251169800758362 and after 0.618613600730896 +num_clicks 50 points_length: 12033 dynamic_size: 13 +filter out voxels: 667 +filter out voxels: 25102 +First batch: fn: 0.0259, fp: 0.2441, label 0: tensor(39), label 1: tensor(210) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5268071889877319 and after 0.6163511276245117 +num_clicks 50 points_length: 11797 dynamic_size: 48 +filter out voxels: 614 +filter out voxels: 26251 +First batch: fn: 0.0126, fp: 0.2521, label 0: tensor(151), label 1: tensor(166) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5044679045677185 and after 0.63899827003479 +epoch: 5/20, iter: 15/42: loss:2.0401: rank:-1 +[23:03:32.309] epoch: 5/20, iter: 15/42: loss:2.0401: rank:-1 +num_clicks 50 points_length: 3576 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(175) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48967182636260986 and after 0.4480020999908447 +num_clicks 50 points_length: 2414 dynamic_size: 32 +filter out voxels: 11107 +filter out voxels: 784 +First batch: fn: 0.3546, fp: 3.5167, label 0: tensor(222), label 1: tensor(239) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5992870330810547 and after 0.694543719291687 +num_clicks 50 points_length: 1284 dynamic_size: 17 +filter out voxels: 3801 +filter out voxels: 160 +First batch: fn: 0.0816, fp: 1.4343, label 0: tensor(91), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6569118499755859 and after 0.7367942929267883 +num_clicks 50 points_length: 935 dynamic_size: 12 +filter out voxels: 3103 +filter out voxels: 11 +First batch: fn: 0.0185, fp: 1.3205, label 0: tensor(247), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.557153582572937 and after 0.8500401973724365 +num_clicks 50 points_length: 861 dynamic_size: 48 +filter out voxels: 385 +filter out voxels: 13 +First batch: fn: 0.0346, fp: 0.4149, label 0: tensor(188), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5982511043548584 and after 0.8793135285377502 +num_clicks 50 points_length: 776 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 8 +First batch: fn: 0.0310, fp: 0.2848, label 0: tensor(148), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5994240641593933 and after 0.8870145082473755 +num_clicks 50 points_length: 752 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 8 +First batch: fn: 0.0302, fp: 0.2533, label 0: tensor(212), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5743865966796875 and after 0.8964129686355591 +num_clicks 50 points_length: 750 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 15 +First batch: fn: 0.0352, fp: 0.2015, label 0: tensor(98), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6305999755859375 and after 0.8993343710899353 +num_clicks 50 points_length: 704 dynamic_size: 35 +filter out voxels: 3 +filter out voxels: 7 +First batch: fn: 0.0310, fp: 0.2048, label 0: tensor(176), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5960743427276611 and after 0.9069933891296387 +num_clicks 50 points_length: 680 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 7 +First batch: fn: 0.0412, fp: 0.1611, label 0: tensor(169), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5963684320449829 and after 0.9075474143028259 +num_clicks 50 points_length: 664 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 7 +First batch: fn: 0.0382, fp: 0.1663, label 0: tensor(176), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.588712215423584 and after 0.9127495884895325 +epoch: 5/20, iter: 16/42: loss:1.4565: rank:-1 +[23:03:44.568] epoch: 5/20, iter: 16/42: loss:1.4565: rank:-1 +num_clicks 50 points_length: 1398 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.038017649203538895 and after 0.15356987714767456 +num_clicks 50 points_length: 3505 dynamic_size: 45 +filter out voxels: 25309 +filter out voxels: 1730 +First batch: fn: 0.5767, fp: 15.6571, label 0: tensor(107), label 1: tensor(240) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.019723866134881973 and after 0.27528178691864014 +num_clicks 50 points_length: 1680 dynamic_size: 4 +filter out voxels: 28866 +filter out voxels: 21 +First batch: fn: 0.0417, fp: 18.4521, label 0: tensor(196), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0405128188431263 and after 0.36641067266464233 +num_clicks 50 points_length: 1298 dynamic_size: 29 +filter out voxels: 18549 +filter out voxels: 0 +First batch: fn: 0.0589, fp: 11.8552, label 0: tensor(153), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04892253875732422 and after 0.4134337604045868 +num_clicks 50 points_length: 1017 dynamic_size: 17 +filter out voxels: 15562 +filter out voxels: 0 +First batch: fn: 0.0368, fp: 10.0288, label 0: tensor(209), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.032278481870889664 and after 0.456358402967453 +num_clicks 50 points_length: 736 dynamic_size: 41 +filter out voxels: 13582 +filter out voxels: 0 +First batch: fn: 0.0454, fp: 8.7000, label 0: tensor(122), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.089268758893013 and after 0.41421204805374146 +num_clicks 50 points_length: 1397 dynamic_size: 3 +filter out voxels: 13087 +filter out voxels: 24 +First batch: fn: 0.0491, fp: 8.3454, label 0: tensor(133), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.03509891405701637 and after 0.4642806053161621 +num_clicks 50 points_length: 819 dynamic_size: 33 +filter out voxels: 13248 +filter out voxels: 0 +First batch: fn: 0.0528, fp: 8.4147, label 0: tensor(120), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0952153131365776 and after 0.4539515972137451 +num_clicks 50 points_length: 980 dynamic_size: 25 +filter out voxels: 13025 +filter out voxels: 0 +First batch: fn: 0.0656, fp: 8.2411, label 0: tensor(112), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.037365421652793884 and after 0.47746017575263977 +num_clicks 50 points_length: 651 dynamic_size: 18 +filter out voxels: 15473 +filter out voxels: 0 +First batch: fn: 0.0503, fp: 9.7620, label 0: tensor(113), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07371273636817932 and after 0.4753868579864502 +num_clicks 50 points_length: 743 dynamic_size: 48 +filter out voxels: 13859 +filter out voxels: 0 +First batch: fn: 0.0644, fp: 8.7294, label 0: tensor(104), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04730139300227165 and after 0.4801061749458313 +epoch: 5/20, iter: 17/42: loss:3.9935: rank:-1 +[23:03:55.818] epoch: 5/20, iter: 17/42: loss:3.9935: rank:-1 +num_clicks 50 points_length: 4217 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26436012983322144 and after 0.27352648973464966 +num_clicks 50 points_length: 6011 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 1034 +First batch: fn: 0.9616, fp: 0.0001, label 0: tensor(22), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3435460925102234 and after 0.3673213720321655 +num_clicks 50 points_length: 3845 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 395 +First batch: fn: 0.9703, fp: 0.0004, label 0: tensor(6), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3458658456802368 and after 0.48306649923324585 +num_clicks 50 points_length: 1727 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.9231, fp: 0.0007, label 0: tensor(0), label 1: tensor(317) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.373606413602829 and after 0.4842338263988495 +num_clicks 50 points_length: 1432 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9358, fp: 0.0007, label 0: tensor(0), label 1: tensor(343) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39087367057800293 and after 0.5171541571617126 +num_clicks 50 points_length: 1138 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9133, fp: 0.0015, label 0: tensor(0), label 1: tensor(348) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35282671451568604 and after 0.517477810382843 +num_clicks 50 points_length: 1083 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9167, fp: 0.0006, label 0: tensor(0), label 1: tensor(252) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3902987837791443 and after 0.5406454205513 +num_clicks 50 points_length: 1096 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8884, fp: 0.0018, label 0: tensor(0), label 1: tensor(343) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34765249490737915 and after 0.5426664352416992 +num_clicks 50 points_length: 938 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8949, fp: 0.0005, label 0: tensor(0), label 1: tensor(287) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3868294954299927 and after 0.5596396923065186 +num_clicks 50 points_length: 963 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8722, fp: 0.0016, label 0: tensor(0), label 1: tensor(239) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36624473333358765 and after 0.5461238026618958 +num_clicks 50 points_length: 918 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8918, fp: 0.0006, label 0: tensor(0), label 1: tensor(291) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38632577657699585 and after 0.5682098865509033 +epoch: 5/20, iter: 18/42: loss:3.0909: rank:-1 +[23:04:15.447] epoch: 5/20, iter: 18/42: loss:3.0909: rank:-1 +num_clicks 50 points_length: 569 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.04527938365936279 and after 0.42383843660354614 +num_clicks 50 points_length: 594 dynamic_size: 14 +filter out voxels: 163 +filter out voxels: 917 +First batch: fn: 0.2777, fp: 0.7663, label 0: tensor(76), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14444445073604584 and after 0.554084062576294 +num_clicks 50 points_length: 343 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 1219 +First batch: fn: 0.3251, fp: 0.2777, label 0: tensor(37), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15676727890968323 and after 0.619106650352478 +num_clicks 50 points_length: 419 dynamic_size: 32 +filter out voxels: 10 +filter out voxels: 381 +First batch: fn: 0.1265, fp: 0.6098, label 0: tensor(97), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15041783452033997 and after 0.7161949872970581 +num_clicks 50 points_length: 298 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1441, fp: 0.3796, label 0: tensor(94), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14245013892650604 and after 0.7299214005470276 +num_clicks 50 points_length: 255 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1740, fp: 0.2742, label 0: tensor(77), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13719943165779114 and after 0.7345625162124634 +num_clicks 50 points_length: 274 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1547, fp: 0.3269, label 0: tensor(52), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15040650963783264 and after 0.7329500913619995 +num_clicks 50 points_length: 251 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1705, fp: 0.2707, label 0: tensor(53), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14883148670196533 and after 0.7500948905944824 +num_clicks 50 points_length: 281 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1441, fp: 0.3497, label 0: tensor(103), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14000000059604645 and after 0.7485073804855347 +num_clicks 50 points_length: 261 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1582, fp: 0.3005, label 0: tensor(76), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15102040767669678 and after 0.7679756879806519 +num_clicks 50 points_length: 265 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1582, fp: 0.3076, label 0: tensor(92), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1444600224494934 and after 0.775742769241333 +epoch: 5/20, iter: 19/42: loss:3.5931: rank:-1 +[23:04:25.420] epoch: 5/20, iter: 19/42: loss:3.5931: rank:-1 +num_clicks 50 points_length: 36662 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33464905619621277 and after 0.32534971833229065 +num_clicks 50 points_length: 26191 dynamic_size: 25 +filter out voxels: 2 +filter out voxels: 1469 +First batch: fn: 0.6423, fp: 0.0721, label 0: tensor(374), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3658948242664337 and after 0.4198336601257324 +num_clicks 50 points_length: 22404 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 48 +First batch: fn: 0.5514, fp: 0.0597, label 0: tensor(308), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40004003047943115 and after 0.49989745020866394 +num_clicks 50 points_length: 20816 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 45 +First batch: fn: 0.4905, fp: 0.0773, label 0: tensor(262), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4313223361968994 and after 0.5586743354797363 +num_clicks 50 points_length: 19305 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 39 +First batch: fn: 0.4108, fp: 0.1157, label 0: tensor(260), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.434887558221817 and after 0.6043453216552734 +num_clicks 50 points_length: 18381 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 25 +First batch: fn: 0.3622, fp: 0.1392, label 0: tensor(353), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4184202551841736 and after 0.6512489318847656 +num_clicks 50 points_length: 16823 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3224, fp: 0.1365, label 0: tensor(242), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44251784682273865 and after 0.6968392133712769 +num_clicks 50 points_length: 14230 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 4 +First batch: fn: 0.2358, fp: 0.1524, label 0: tensor(293), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4507567882537842 and after 0.7254019379615784 +num_clicks 50 points_length: 13862 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1781, fp: 0.2000, label 0: tensor(387), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4594954550266266 and after 0.7508962750434875 +num_clicks 50 points_length: 13041 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1430, fp: 0.2128, label 0: tensor(434), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4581718444824219 and after 0.7756921052932739 +num_clicks 50 points_length: 12071 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1119, fp: 0.2174, label 0: tensor(490), label 1: tensor(445) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46308207511901855 and after 0.811339259147644 +epoch: 5/20, iter: 20/42: loss:2.3811: rank:-1 +[23:04:47.645] epoch: 5/20, iter: 20/42: loss:2.3811: rank:-1 +num_clicks 50 points_length: 12181 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5335710644721985 and after 0.4012424051761627 +num_clicks 50 points_length: 8068 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 592 +First batch: fn: 0.5500, fp: 0.1123, label 0: tensor(147), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5833147764205933 and after 0.5521379113197327 +num_clicks 50 points_length: 6717 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 198 +First batch: fn: 0.3968, fp: 0.1546, label 0: tensor(245), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6150168180465698 and after 0.6714165210723877 +num_clicks 50 points_length: 6138 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 95 +First batch: fn: 0.2552, fp: 0.2487, label 0: tensor(364), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6248997449874878 and after 0.7437867522239685 +num_clicks 50 points_length: 6039 dynamic_size: 19 +filter out voxels: 4 +filter out voxels: 83 +First batch: fn: 0.1520, fp: 0.3437, label 0: tensor(377), label 1: tensor(408) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6585328578948975 and after 0.8005539774894714 +num_clicks 50 points_length: 6086 dynamic_size: 2 +filter out voxels: 10 +filter out voxels: 74 +First batch: fn: 0.0754, fp: 0.4243, label 0: tensor(502), label 1: tensor(224) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6722831130027771 and after 0.8348041772842407 +num_clicks 50 points_length: 5766 dynamic_size: 32 +filter out voxels: 12 +filter out voxels: 57 +First batch: fn: 0.0782, fp: 0.3952, label 0: tensor(525), label 1: tensor(259) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6798405647277832 and after 0.8554617762565613 +num_clicks 50 points_length: 5442 dynamic_size: 26 +filter out voxels: 11 +filter out voxels: 56 +First batch: fn: 0.0682, fp: 0.3785, label 0: tensor(525), label 1: tensor(248) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6691737174987793 and after 0.8676113486289978 +num_clicks 50 points_length: 5036 dynamic_size: 16 +filter out voxels: 11 +filter out voxels: 84 +First batch: fn: 0.0681, fp: 0.3583, label 0: tensor(515), label 1: tensor(243) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6487884521484375 and after 0.8752800226211548 +num_clicks 50 points_length: 4759 dynamic_size: 38 +filter out voxels: 11 +filter out voxels: 36 +First batch: fn: 0.0565, fp: 0.3458, label 0: tensor(462), label 1: tensor(193) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6270709037780762 and after 0.883111298084259 +num_clicks 50 points_length: 4210 dynamic_size: 6 +filter out voxels: 11 +filter out voxels: 21 +First batch: fn: 0.0559, fp: 0.3260, label 0: tensor(461), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6225771903991699 and after 0.8902491331100464 +epoch: 5/20, iter: 21/42: loss:1.4681: rank:-1 +[23:05:08.174] epoch: 5/20, iter: 21/42: loss:1.4681: rank:-1 +num_clicks 50 points_length: 1053 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33812862634658813 and after 0.3431287109851837 +num_clicks 50 points_length: 1416 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 597 +First batch: fn: 0.9221, fp: 0.0002, label 0: tensor(0), label 1: tensor(166) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5718441009521484 and after 0.49231070280075073 +num_clicks 50 points_length: 693 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 82 +First batch: fn: 0.8617, fp: 0.0006, label 0: tensor(0), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5973451137542725 and after 0.49788981676101685 +num_clicks 50 points_length: 679 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 50 +First batch: fn: 0.8567, fp: 0.0008, label 0: tensor(0), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6016576290130615 and after 0.5244585871696472 +num_clicks 50 points_length: 539 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 46 +First batch: fn: 0.8516, fp: 0.0006, label 0: tensor(0), label 1: tensor(185) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5956867337226868 and after 0.5480896234512329 +num_clicks 50 points_length: 378 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 60 +First batch: fn: 0.8474, fp: 0.0007, label 0: tensor(0), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5070852041244507 and after 0.5276345014572144 +num_clicks 50 points_length: 523 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 187 +First batch: fn: 0.8416, fp: 0.0006, label 0: tensor(0), label 1: tensor(184) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5916245579719543 and after 0.5407462120056152 +num_clicks 50 points_length: 470 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 65 +First batch: fn: 0.8453, fp: 0.0008, label 0: tensor(0), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5990386009216309 and after 0.5521975755691528 +num_clicks 50 points_length: 422 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 45 +First batch: fn: 0.8410, fp: 0.0006, label 0: tensor(0), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5997524261474609 and after 0.5643741488456726 +num_clicks 50 points_length: 393 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 44 +First batch: fn: 0.8306, fp: 0.0007, label 0: tensor(0), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5920847654342651 and after 0.5684173703193665 +num_clicks 50 points_length: 357 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 49 +First batch: fn: 0.8332, fp: 0.0007, label 0: tensor(1), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5864818096160889 and after 0.5690564513206482 +epoch: 5/20, iter: 22/42: loss:2.344: rank:-1 +[23:05:22.150] epoch: 5/20, iter: 22/42: loss:2.344: rank:-1 +num_clicks 50 points_length: 974 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.18167580664157867 +num_clicks 50 points_length: 1626 dynamic_size: 33 +filter out voxels: 1055 +filter out voxels: 0 +First batch: fn: 0.5236, fp: 1.1458, label 0: tensor(60), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.49668145179748535 +num_clicks 50 points_length: 471 dynamic_size: 36 +filter out voxels: 40 +filter out voxels: 0 +First batch: fn: 0.4045, fp: 0.0791, label 0: tensor(22), label 1: tensor(157) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.5760016441345215 +num_clicks 50 points_length: 977 dynamic_size: 7 +filter out voxels: 235 +filter out voxels: 0 +First batch: fn: 0.0236, fp: 0.9795, label 0: tensor(110), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0 and after 0.7048064470291138 +num_clicks 50 points_length: 330 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0483, fp: 0.2906, label 0: tensor(66), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0005691519472748041 and after 0.7304788827896118 +num_clicks 50 points_length: 296 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0359, fp: 0.2680, label 0: tensor(61), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0037431614473462105 and after 0.7485157251358032 +num_clicks 50 points_length: 243 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0513, fp: 0.1982, label 0: tensor(97), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0027046706527471542 and after 0.7821526527404785 +num_clicks 50 points_length: 220 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0554, fp: 0.1704, label 0: tensor(61), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0044454843737185 and after 0.7929376363754272 +num_clicks 50 points_length: 203 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0626, fp: 0.1458, label 0: tensor(75), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.002818224485963583 and after 0.8115658760070801 +num_clicks 50 points_length: 193 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0678, fp: 0.1304, label 0: tensor(45), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.007784317247569561 and after 0.8117603063583374 +num_clicks 50 points_length: 190 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0698, fp: 0.1253, label 0: tensor(48), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.002350728726014495 and after 0.8148213624954224 +epoch: 5/20, iter: 23/42: loss:4.3031: rank:-1 +[23:05:31.764] epoch: 5/20, iter: 23/42: loss:4.3031: rank:-1 +num_clicks 50 points_length: 8992 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(490) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24458757042884827 and after 0.5248512029647827 +num_clicks 50 points_length: 4723 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 251 +First batch: fn: 0.4839, fp: 0.0414, label 0: tensor(129), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4503414034843445 and after 0.7145851850509644 +num_clicks 50 points_length: 3179 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 168 +First batch: fn: 0.1932, fp: 0.1604, label 0: tensor(297), label 1: tensor(354) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5386173129081726 and after 0.8036247491836548 +num_clicks 50 points_length: 2638 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 159 +First batch: fn: 0.0593, fp: 0.2341, label 0: tensor(438), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5453218221664429 and after 0.8462409973144531 +num_clicks 50 points_length: 2605 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 169 +First batch: fn: 0.0234, fp: 0.2663, label 0: tensor(374), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6810956001281738 and after 0.8650535345077515 +num_clicks 50 points_length: 2300 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 3 +First batch: fn: 0.0129, fp: 0.2429, label 0: tensor(431), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6787197589874268 and after 0.8820909261703491 +num_clicks 50 points_length: 1696 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0231, fp: 0.1655, label 0: tensor(332), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.697547435760498 and after 0.8913211822509766 +num_clicks 50 points_length: 1394 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0249, fp: 0.1301, label 0: tensor(205), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7254637479782104 and after 0.8892059326171875 +num_clicks 50 points_length: 1391 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0258, fp: 0.1289, label 0: tensor(333), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6709080934524536 and after 0.8955695629119873 +num_clicks 50 points_length: 1228 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0262, fp: 0.1103, label 0: tensor(166), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7299597263336182 and after 0.8978220224380493 +num_clicks 50 points_length: 1162 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0341, fp: 0.0951, label 0: tensor(190), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.725496232509613 and after 0.8977131247520447 +epoch: 5/20, iter: 24/42: loss:1.8479: rank:-1 +[23:05:48.139] epoch: 5/20, iter: 24/42: loss:1.8479: rank:-1 +num_clicks 50 points_length: 3914 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(220) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5464773178100586 and after 0.7243083715438843 +num_clicks 50 points_length: 2686 dynamic_size: 48 +filter out voxels: 673 +filter out voxels: 110 +First batch: fn: 0.4926, fp: 0.1937, label 0: tensor(46), label 1: tensor(380) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6196619272232056 and after 0.8269851207733154 +num_clicks 50 points_length: 1765 dynamic_size: 29 +filter out voxels: 45 +filter out voxels: 0 +First batch: fn: 0.1101, fp: 0.3408, label 0: tensor(308), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6889369487762451 and after 0.8338582515716553 +num_clicks 50 points_length: 1723 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.0332, fp: 0.4070, label 0: tensor(216), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6934541463851929 and after 0.8501628041267395 +num_clicks 50 points_length: 1399 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0187, fp: 0.3388, label 0: tensor(192), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.698211133480072 and after 0.8644591569900513 +num_clicks 50 points_length: 1115 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0199, fp: 0.2649, label 0: tensor(346), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.726412296295166 and after 0.8883105516433716 +num_clicks 50 points_length: 699 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0391, fp: 0.1395, label 0: tensor(205), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7009320259094238 and after 0.8835902214050293 +num_clicks 50 points_length: 797 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0250, fp: 0.1786, label 0: tensor(174), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6915241479873657 and after 0.8901245594024658 +num_clicks 50 points_length: 677 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0309, fp: 0.1421, label 0: tensor(174), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6934933066368103 and after 0.890601396560669 +num_clicks 50 points_length: 691 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0225, fp: 0.1541, label 0: tensor(125), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6835277080535889 and after 0.8973616361618042 +num_clicks 50 points_length: 599 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0253, fp: 0.1277, label 0: tensor(159), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7104285955429077 and after 0.888755202293396 +epoch: 5/20, iter: 25/42: loss:1.3053: rank:-1 +[23:06:01.512] epoch: 5/20, iter: 25/42: loss:1.3053: rank:-1 +num_clicks 50 points_length: 1340 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(138) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12455900013446808 and after 0.05449225753545761 +num_clicks 50 points_length: 12371 dynamic_size: 11 +filter out voxels: 5831 +filter out voxels: 0 +First batch: fn: 0.9099, fp: 0.9027, label 0: tensor(114), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.033862706273794174 and after 0.23396629095077515 +num_clicks 50 points_length: 13900 dynamic_size: 4 +filter out voxels: 10693 +filter out voxels: 0 +First batch: fn: 0.2410, fp: 1.7956, label 0: tensor(332), label 1: tensor(298) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13595683872699738 and after 0.24748113751411438 +num_clicks 50 points_length: 13977 dynamic_size: 47 +filter out voxels: 11204 +filter out voxels: 0 +First batch: fn: 0.2530, fp: 1.7949, label 0: tensor(242), label 1: tensor(278) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12718144059181213 and after 0.2518366873264313 +num_clicks 50 points_length: 16926 dynamic_size: 34 +filter out voxels: 15288 +filter out voxels: 0 +First batch: fn: 0.0652, fp: 2.5751, label 0: tensor(482), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14075475931167603 and after 0.2825931906700134 +num_clicks 50 points_length: 15341 dynamic_size: 19 +filter out voxels: 12968 +filter out voxels: 0 +First batch: fn: 0.0346, fp: 2.2132, label 0: tensor(471), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14703407883644104 and after 0.30053627490997314 +num_clicks 50 points_length: 13781 dynamic_size: 5 +filter out voxels: 11864 +filter out voxels: 0 +First batch: fn: 0.0252, fp: 1.9940, label 0: tensor(307), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1522766649723053 and after 0.30841320753097534 +num_clicks 50 points_length: 13139 dynamic_size: 24 +filter out voxels: 11231 +filter out voxels: 0 +First batch: fn: 0.0164, fp: 1.9087, label 0: tensor(349), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16829384863376617 and after 0.32737869024276733 +num_clicks 50 points_length: 11384 dynamic_size: 9 +filter out voxels: 9704 +filter out voxels: 0 +First batch: fn: 0.0236, fp: 1.6444, label 0: tensor(375), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19479316473007202 and after 0.35108301043510437 +num_clicks 50 points_length: 9279 dynamic_size: 2 +filter out voxels: 7752 +filter out voxels: 0 +First batch: fn: 0.0404, fp: 1.3191, label 0: tensor(256), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20225109159946442 and after 0.3480786681175232 +num_clicks 50 points_length: 9599 dynamic_size: 23 +filter out voxels: 7679 +filter out voxels: 0 +First batch: fn: 0.0338, fp: 1.3726, label 0: tensor(325), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21135297417640686 and after 0.3640357255935669 +epoch: 5/20, iter: 26/42: loss:3.5517: rank:-1 +[23:06:17.692] epoch: 5/20, iter: 26/42: loss:3.5517: rank:-1 +num_clicks 50 points_length: 573 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1735595464706421 and after 0.21956965327262878 +num_clicks 50 points_length: 1071 dynamic_size: 7 +filter out voxels: 337 +filter out voxels: 685 +First batch: fn: 0.9996, fp: 0.0549, label 0: tensor(1), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3788647949695587 and after 0.3200345039367676 +num_clicks 50 points_length: 662 dynamic_size: 5 +filter out voxels: 309 +filter out voxels: 0 +First batch: fn: 0.9964, fp: 0.0839, label 0: tensor(0), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18261705338954926 and after 0.3446958661079407 +num_clicks 50 points_length: 517 dynamic_size: 20 +filter out voxels: 255 +filter out voxels: 0 +First batch: fn: 0.9967, fp: 0.1070, label 0: tensor(2), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17962326109409332 and after 0.4053201675415039 +num_clicks 50 points_length: 324 dynamic_size: 4 +filter out voxels: 248 +filter out voxels: 0 +First batch: fn: 0.9769, fp: 0.1220, label 0: tensor(1), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15583887696266174 and after 0.4207306206226349 +num_clicks 50 points_length: 258 dynamic_size: 13 +filter out voxels: 299 +filter out voxels: 0 +First batch: fn: 0.9810, fp: 0.1607, label 0: tensor(1), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.10582408308982849 and after 0.481869637966156 +num_clicks 50 points_length: 214 dynamic_size: 5 +filter out voxels: 552 +filter out voxels: 0 +First batch: fn: 0.9162, fp: 0.2187, label 0: tensor(0), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23419344425201416 and after 0.4402141571044922 +num_clicks 50 points_length: 200 dynamic_size: 7 +filter out voxels: 1005 +filter out voxels: 0 +First batch: fn: 0.9766, fp: 0.2360, label 0: tensor(2), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16097095608711243 and after 0.5025330781936646 +num_clicks 50 points_length: 176 dynamic_size: 5 +filter out voxels: 1708 +filter out voxels: 0 +First batch: fn: 0.8995, fp: 0.2731, label 0: tensor(3), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28989896178245544 and after 0.4437568783760071 +num_clicks 50 points_length: 201 dynamic_size: 37 +filter out voxels: 2605 +filter out voxels: 0 +First batch: fn: 0.9708, fp: 0.3000, label 0: tensor(7), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13872194290161133 and after 0.5380637645721436 +num_clicks 50 points_length: 166 dynamic_size: 46 +filter out voxels: 3664 +filter out voxels: 0 +First batch: fn: 0.8369, fp: 0.3807, label 0: tensor(12), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2008395493030548 and after 0.47152724862098694 +epoch: 5/20, iter: 27/42: loss:3.0525: rank:-1 +[23:06:29.222] epoch: 5/20, iter: 27/42: loss:3.0525: rank:-1 +num_clicks 50 points_length: 43139 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5246399641036987 and after 0.21699343621730804 +num_clicks 50 points_length: 32117 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7439, fp: 0.0006, label 0: tensor(7), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.536679208278656 and after 0.27836155891418457 +num_clicks 50 points_length: 28499 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6444, fp: 0.0163, label 0: tensor(4), label 1: tensor(534) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5506199598312378 and after 0.3172132074832916 +num_clicks 50 points_length: 26084 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5831, fp: 0.0216, label 0: tensor(7), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5560945272445679 and after 0.35888245701789856 +num_clicks 50 points_length: 22771 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5024, fp: 0.0255, label 0: tensor(9), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5625248551368713 and after 0.3994165360927582 +num_clicks 50 points_length: 18980 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3968, fp: 0.0431, label 0: tensor(11), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5761032104492188 and after 0.4302474558353424 +num_clicks 50 points_length: 16763 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3228, fp: 0.0657, label 0: tensor(30), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5857678651809692 and after 0.4606294333934784 +num_clicks 50 points_length: 14213 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2406, fp: 0.0889, label 0: tensor(39), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6109667420387268 and after 0.46882033348083496 +num_clicks 50 points_length: 12479 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1443, fp: 0.1450, label 0: tensor(46), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5762497782707214 and after 0.48488229513168335 +num_clicks 50 points_length: 12563 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0913, fp: 0.1999, label 0: tensor(49), label 1: tensor(488) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5870839953422546 and after 0.490079402923584 +num_clicks 50 points_length: 11781 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0357, fp: 0.2374, label 0: tensor(364), label 1: tensor(202) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5935458540916443 and after 0.501168966293335 +epoch: 5/20, iter: 28/42: loss:2.6725: rank:-1 +[23:06:49.816] epoch: 5/20, iter: 28/42: loss:2.6725: rank:-1 +num_clicks 50 points_length: 413 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35933589935302734 and after 0.24523644149303436 +num_clicks 50 points_length: 2320 dynamic_size: 7 +filter out voxels: 19 +filter out voxels: 1865 +First batch: fn: 0.7092, fp: 0.0020, label 0: tensor(0), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40646886825561523 and after 0.35451382398605347 +num_clicks 50 points_length: 4590 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 4140 +First batch: fn: 0.5414, fp: 0.0017, label 0: tensor(0), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4334107041358948 and after 0.3978167176246643 +num_clicks 50 points_length: 3943 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 3575 +First batch: fn: 0.4820, fp: 0.0021, label 0: tensor(0), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4327189326286316 and after 0.41536998748779297 +num_clicks 50 points_length: 3642 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 3382 +First batch: fn: 0.4587, fp: 0.0053, label 0: tensor(1), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4266267716884613 and after 0.42159998416900635 +num_clicks 50 points_length: 4062 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 3791 +First batch: fn: 0.4512, fp: 0.0059, label 0: tensor(0), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4249054491519928 and after 0.42881882190704346 +num_clicks 50 points_length: 3876 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 3639 +First batch: fn: 0.4455, fp: 0.0068, label 0: tensor(0), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4264602065086365 and after 0.4196893870830536 +num_clicks 50 points_length: 4889 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 4570 +First batch: fn: 0.4419, fp: 0.0076, label 0: tensor(0), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42447879910469055 and after 0.4322727918624878 +num_clicks 50 points_length: 3828 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 3600 +First batch: fn: 0.4434, fp: 0.0082, label 0: tensor(1), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42495492100715637 and after 0.4349191188812256 +num_clicks 50 points_length: 3692 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 3478 +First batch: fn: 0.4394, fp: 0.0083, label 0: tensor(0), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4256925582885742 and after 0.43068501353263855 +num_clicks 50 points_length: 4184 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 3947 +First batch: fn: 0.4341, fp: 0.0088, label 0: tensor(0), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42697346210479736 and after 0.4407401382923126 +epoch: 5/20, iter: 29/42: loss:2.7767: rank:-1 +[23:07:00.690] epoch: 5/20, iter: 29/42: loss:2.7767: rank:-1 +num_clicks 50 points_length: 224 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32642436027526855 and after 0.36618202924728394 +num_clicks 50 points_length: 397 dynamic_size: 43 +filter out voxels: 219 +filter out voxels: 0 +First batch: fn: 0.1830, fp: 1.5893, label 0: tensor(67), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35635629296302795 and after 0.4611506462097168 +num_clicks 50 points_length: 405 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0089, fp: 1.7991, label 0: tensor(145), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2882007956504822 and after 0.5926142334938049 +num_clicks 50 points_length: 163 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1071, fp: 0.6205, label 0: tensor(61), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31732138991355896 and after 0.6556627750396729 +num_clicks 50 points_length: 112 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1473, fp: 0.3527, label 0: tensor(49), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3875519633293152 and after 0.6650235652923584 +num_clicks 50 points_length: 101 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1964, fp: 0.2545, label 0: tensor(39), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3740309476852417 and after 0.6845523715019226 +num_clicks 50 points_length: 111 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1384, fp: 0.3571, label 0: tensor(55), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3498483896255493 and after 0.699417233467102 +num_clicks 50 points_length: 113 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1071, fp: 0.3973, label 0: tensor(51), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.324427992105484 and after 0.7090305089950562 +num_clicks 50 points_length: 117 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0982, fp: 0.4241, label 0: tensor(26), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3524748384952545 and after 0.7278823852539062 +num_clicks 50 points_length: 106 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1116, fp: 0.3616, label 0: tensor(47), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35942110419273376 and after 0.7354331612586975 +num_clicks 50 points_length: 111 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1027, fp: 0.3929, label 0: tensor(58), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3385370969772339 and after 0.7430068254470825 +epoch: 5/20, iter: 30/42: loss:2.527: rank:-1 +[23:07:10.616] epoch: 5/20, iter: 30/42: loss:2.527: rank:-1 +num_clicks 50 points_length: 151 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.035007044672966 and after 0.43614235520362854 +num_clicks 50 points_length: 694 dynamic_size: 15 +filter out voxels: 310 +filter out voxels: 0 +First batch: fn: 0.0795, fp: 4.5166, label 0: tensor(88), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38936030864715576 and after 0.6403378248214722 +num_clicks 50 points_length: 196 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 74 +First batch: fn: 0.1192, fp: 1.1788, label 0: tensor(58), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46815547347068787 and after 0.7253624200820923 +num_clicks 50 points_length: 121 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 26 +First batch: fn: 0.1722, fp: 0.6291, label 0: tensor(36), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5777795314788818 and after 0.7164931893348694 +num_clicks 50 points_length: 118 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 39 +First batch: fn: 0.1523, fp: 0.6291, label 0: tensor(40), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5505648851394653 and after 0.7254950404167175 +num_clicks 50 points_length: 100 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1987, fp: 0.4636, label 0: tensor(67), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45775526762008667 and after 0.7601916193962097 +num_clicks 50 points_length: 85 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2185, fp: 0.3444, label 0: tensor(33), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5858756303787231 and after 0.7526784539222717 +num_clicks 50 points_length: 96 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1987, fp: 0.4371, label 0: tensor(51), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43594232201576233 and after 0.7716982960700989 +num_clicks 50 points_length: 94 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2053, fp: 0.4172, label 0: tensor(50), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4695168137550354 and after 0.7728589773178101 +num_clicks 50 points_length: 96 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2053, fp: 0.4305, label 0: tensor(65), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4331357181072235 and after 0.7880282402038574 +num_clicks 50 points_length: 93 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1921, fp: 0.4238, label 0: tensor(59), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45424604415893555 and after 0.793128490447998 +epoch: 5/20, iter: 31/42: loss:2.2503: rank:-1 +[23:07:19.662] epoch: 5/20, iter: 31/42: loss:2.2503: rank:-1 +num_clicks 50 points_length: 9933 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(448) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5831174850463867 and after 0.48463863134384155 +num_clicks 50 points_length: 5226 dynamic_size: 19 +filter out voxels: 71 +filter out voxels: 24 +First batch: fn: 0.8055, fp: 0.0172, label 0: tensor(30), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6025846600532532 and after 0.7411658763885498 +num_clicks 50 points_length: 3232 dynamic_size: 30 +filter out voxels: 22 +filter out voxels: 1 +First batch: fn: 0.4983, fp: 0.0346, label 0: tensor(59), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6704565286636353 and after 0.8140349388122559 +num_clicks 50 points_length: 3076 dynamic_size: 9 +filter out voxels: 14 +filter out voxels: 0 +First batch: fn: 0.3241, fp: 0.0663, label 0: tensor(2), label 1: tensor(463) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7507747411727905 and after 0.8343825340270996 +num_clicks 50 points_length: 2447 dynamic_size: 47 +filter out voxels: 14 +filter out voxels: 0 +First batch: fn: 0.2747, fp: 0.1106, label 0: tensor(11), label 1: tensor(452) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7173014879226685 and after 0.8424729108810425 +num_clicks 50 points_length: 2186 dynamic_size: 42 +filter out voxels: 14 +filter out voxels: 0 +First batch: fn: 0.2553, fp: 0.1394, label 0: tensor(14), label 1: tensor(386) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7566466331481934 and after 0.8615942001342773 +num_clicks 50 points_length: 2273 dynamic_size: 33 +filter out voxels: 9 +filter out voxels: 0 +First batch: fn: 0.1803, fp: 0.1513, label 0: tensor(10), label 1: tensor(387) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7564706802368164 and after 0.8848758935928345 +num_clicks 50 points_length: 1986 dynamic_size: 11 +filter out voxels: 7 +filter out voxels: 0 +First batch: fn: 0.1099, fp: 0.1688, label 0: tensor(10), label 1: tensor(338) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7518372535705566 and after 0.8892784714698792 +num_clicks 50 points_length: 1890 dynamic_size: 17 +filter out voxels: 7 +filter out voxels: 0 +First batch: fn: 0.0966, fp: 0.1766, label 0: tensor(12), label 1: tensor(379) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7533292770385742 and after 0.8922650218009949 +num_clicks 50 points_length: 1875 dynamic_size: 36 +filter out voxels: 10 +filter out voxels: 0 +First batch: fn: 0.0781, fp: 0.1868, label 0: tensor(24), label 1: tensor(442) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7466167211532593 and after 0.8978144526481628 +num_clicks 50 points_length: 1820 dynamic_size: 11 +filter out voxels: 48 +filter out voxels: 0 +First batch: fn: 0.0407, fp: 0.2155, label 0: tensor(10), label 1: tensor(266) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7535591125488281 and after 0.8973550796508789 +epoch: 5/20, iter: 32/42: loss:1.3422: rank:-1 +[23:07:36.152] epoch: 5/20, iter: 32/42: loss:1.3422: rank:-1 +num_clicks 50 points_length: 134497 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(544) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31311601400375366 and after 0.06604965031147003 +num_clicks 50 points_length: 130023 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9652, fp: 0.0032, label 0: tensor(29), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37310725450515747 and after 0.14003154635429382 +num_clicks 50 points_length: 120030 dynamic_size: 20 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.9568, fp: 0.0015, label 0: tensor(86), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39919593930244446 and after 0.21450316905975342 +num_clicks 50 points_length: 111635 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9275, fp: 0.0018, label 0: tensor(77), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4678114056587219 and after 0.26144087314605713 +num_clicks 50 points_length: 105636 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9091, fp: 0.0006, label 0: tensor(25), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5438525080680847 and after 0.3056172728538513 +num_clicks 50 points_length: 99793 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8891, fp: 0.0018, label 0: tensor(85), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5332889556884766 and after 0.3527475595474243 +num_clicks 50 points_length: 92974 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8705, fp: 0.0010, label 0: tensor(61), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5505030155181885 and after 0.39078015089035034 +num_clicks 50 points_length: 87228 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8529, fp: 0.0016, label 0: tensor(98), label 1: tensor(540) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5449551343917847 and after 0.41549158096313477 +num_clicks 50 points_length: 85358 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8330, fp: 0.0005, label 0: tensor(35), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5964431762695312 and after 0.43812185525894165 +num_clicks 50 points_length: 79711 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 21 +First batch: fn: 0.8335, fp: 0.0014, label 0: tensor(89), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.57381272315979 and after 0.47591230273246765 +num_clicks 50 points_length: 76364 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 17 +First batch: fn: 0.7967, fp: 0.0008, label 0: tensor(73), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5902941823005676 and after 0.4937308132648468 +epoch: 5/20, iter: 33/42: loss:3.2799: rank:-1 +[23:07:58.437] epoch: 5/20, iter: 33/42: loss:3.2799: rank:-1 +num_clicks 50 points_length: 21131 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36058861017227173 and after 0.3581206798553467 +num_clicks 50 points_length: 19488 dynamic_size: 1 +filter out voxels: 902 +filter out voxels: 10 +First batch: fn: 0.6640, fp: 0.5501, label 0: tensor(287), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6589233875274658 and after 0.578782320022583 +num_clicks 50 points_length: 11359 dynamic_size: 32 +filter out voxels: 1 +filter out voxels: 0 +First batch: fn: 0.4771, fp: 0.6724, label 0: tensor(217), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6764400601387024 and after 0.6686242818832397 +num_clicks 50 points_length: 8488 dynamic_size: 1 +filter out voxels: 53 +filter out voxels: 0 +First batch: fn: 0.2969, fp: 0.8489, label 0: tensor(306), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6870452165603638 and after 0.7350153923034668 +num_clicks 50 points_length: 7047 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1120, fp: 0.9260, label 0: tensor(503), label 1: tensor(348) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.699931800365448 and after 0.7719009518623352 +num_clicks 50 points_length: 6391 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0398, fp: 0.8825, label 0: tensor(530), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6913424730300903 and after 0.7893991470336914 +num_clicks 50 points_length: 6398 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0223, fp: 0.7929, label 0: tensor(520), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7088025212287903 and after 0.794951319694519 +num_clicks 50 points_length: 6767 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0163, fp: 0.7421, label 0: tensor(521), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7011592388153076 and after 0.8170248866081238 +num_clicks 50 points_length: 5730 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0124, fp: 0.6548, label 0: tensor(504), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7089768648147583 and after 0.8287420272827148 +num_clicks 50 points_length: 4972 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0049, fp: 0.6297, label 0: tensor(508), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7085566520690918 and after 0.8367840051651001 +num_clicks 50 points_length: 4946 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0062, fp: 0.5763, label 0: tensor(534), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7093558311462402 and after 0.85026615858078 +epoch: 5/20, iter: 34/42: loss:2.0241: rank:-1 +[23:08:17.042] epoch: 5/20, iter: 34/42: loss:2.0241: rank:-1 +num_clicks 50 points_length: 11363 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.335987389087677 and after 0.24358375370502472 +num_clicks 50 points_length: 11552 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5323, fp: 0.4844, label 0: tensor(43), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22386609017848969 and after 0.3177468478679657 +num_clicks 50 points_length: 12101 dynamic_size: 26 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.1860, fp: 0.8789, label 0: tensor(345), label 1: tensor(264) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2964881658554077 and after 0.39114609360694885 +num_clicks 50 points_length: 7029 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.1331, fp: 0.4855, label 0: tensor(330), label 1: tensor(238) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31366676092147827 and after 0.39030689001083374 +num_clicks 50 points_length: 7818 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 3 +First batch: fn: 0.0745, fp: 0.6136, label 0: tensor(362), label 1: tensor(269) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29733040928840637 and after 0.40762224793434143 +num_clicks 50 points_length: 7428 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 5 +First batch: fn: 0.0414, fp: 0.6123, label 0: tensor(526), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3393961191177368 and after 0.4266102612018585 +num_clicks 50 points_length: 6663 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 4 +First batch: fn: 0.0417, fp: 0.5447, label 0: tensor(512), label 1: tensor(141) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3323036730289459 and after 0.44420722126960754 +num_clicks 50 points_length: 5349 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.0447, fp: 0.4260, label 0: tensor(505), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.337102472782135 and after 0.4645114541053772 +num_clicks 50 points_length: 5270 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0400, fp: 0.4238, label 0: tensor(471), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34434887766838074 and after 0.4883880615234375 +num_clicks 50 points_length: 4794 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0375, fp: 0.3844, label 0: tensor(427), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35021230578422546 and after 0.49668148159980774 +num_clicks 50 points_length: 4624 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0299, fp: 0.3770, label 0: tensor(520), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34930768609046936 and after 0.51133793592453 +epoch: 5/20, iter: 35/42: loss:4.1082: rank:-1 +[23:08:37.452] epoch: 5/20, iter: 35/42: loss:4.1082: rank:-1 +num_clicks 50 points_length: 11695 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(255) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43940383195877075 and after 0.43557238578796387 +num_clicks 50 points_length: 8883 dynamic_size: 16 +filter out voxels: 529 +filter out voxels: 24 +First batch: fn: 0.3438, fp: 0.4157, label 0: tensor(133), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5473584532737732 and after 0.5420284271240234 +num_clicks 50 points_length: 13075 dynamic_size: 19 +filter out voxels: 712 +filter out voxels: 0 +First batch: fn: 0.0468, fp: 1.0712, label 0: tensor(519), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6627165079116821 and after 0.6849669218063354 +num_clicks 50 points_length: 10038 dynamic_size: 46 +filter out voxels: 343 +filter out voxels: 3 +First batch: fn: 0.0234, fp: 0.8349, label 0: tensor(544), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7237536907196045 and after 0.7395115494728088 +num_clicks 50 points_length: 8537 dynamic_size: 35 +filter out voxels: 372 +filter out voxels: 5 +First batch: fn: 0.0343, fp: 0.6957, label 0: tensor(534), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7278727293014526 and after 0.7547117471694946 +num_clicks 50 points_length: 8246 dynamic_size: 35 +filter out voxels: 399 +filter out voxels: 8 +First batch: fn: 0.0294, fp: 0.6757, label 0: tensor(534), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7349625825881958 and after 0.7706860303878784 +num_clicks 50 points_length: 7123 dynamic_size: 38 +filter out voxels: 466 +filter out voxels: 14 +First batch: fn: 0.0384, fp: 0.5707, label 0: tensor(535), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7345614433288574 and after 0.8000179529190063 +num_clicks 50 points_length: 6775 dynamic_size: 33 +filter out voxels: 383 +filter out voxels: 16 +First batch: fn: 0.0255, fp: 0.5538, label 0: tensor(532), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7427076697349548 and after 0.8239490389823914 +num_clicks 50 points_length: 5947 dynamic_size: 49 +filter out voxels: 407 +filter out voxels: 30 +First batch: fn: 0.0255, fp: 0.4830, label 0: tensor(545), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7470316886901855 and after 0.8380391001701355 +num_clicks 50 points_length: 5383 dynamic_size: 7 +filter out voxels: 402 +filter out voxels: 75 +First batch: fn: 0.0350, fp: 0.4253, label 0: tensor(507), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7441650629043579 and after 0.8465096950531006 +num_clicks 50 points_length: 5023 dynamic_size: 39 +filter out voxels: 352 +filter out voxels: 82 +First batch: fn: 0.0235, fp: 0.4060, label 0: tensor(537), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7371097803115845 and after 0.8572660684585571 +epoch: 5/20, iter: 36/42: loss:1.6889: rank:-1 +[23:08:55.770] epoch: 5/20, iter: 36/42: loss:1.6889: rank:-1 +num_clicks 50 points_length: 3325 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39423954486846924 and after 0.6727160811424255 +num_clicks 50 points_length: 1502 dynamic_size: 39 +filter out voxels: 183 +filter out voxels: 804 +First batch: fn: 0.3284, fp: 0.1233, label 0: tensor(64), label 1: tensor(213) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5113739967346191 and after 0.7160049676895142 +num_clicks 50 points_length: 1536 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 1573 +First batch: fn: 0.0427, fp: 0.4192, label 0: tensor(272), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.487837553024292 and after 0.68451988697052 +num_clicks 50 points_length: 1177 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 2377 +First batch: fn: 0.0195, fp: 0.3344, label 0: tensor(195), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4172123670578003 and after 0.6729217171669006 +num_clicks 50 points_length: 1194 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 3678 +First batch: fn: 0.0096, fp: 0.3495, label 0: tensor(214), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41160592436790466 and after 0.6676662564277649 +num_clicks 50 points_length: 1042 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 4549 +First batch: fn: 0.0120, fp: 0.3014, label 0: tensor(142), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47882094979286194 and after 0.6901066303253174 +num_clicks 50 points_length: 896 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 3280 +First batch: fn: 0.0153, fp: 0.2541, label 0: tensor(190), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4116929769515991 and after 0.6972705125808716 +num_clicks 50 points_length: 840 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 2822 +First batch: fn: 0.0141, fp: 0.2385, label 0: tensor(192), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.443422794342041 and after 0.730448842048645 +num_clicks 50 points_length: 737 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 1221 +First batch: fn: 0.0195, fp: 0.2021, label 0: tensor(148), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5000423192977905 and after 0.7492647767066956 +num_clicks 50 points_length: 630 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 148 +First batch: fn: 0.0265, fp: 0.1630, label 0: tensor(138), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.49570244550704956 and after 0.7701947689056396 +num_clicks 50 points_length: 598 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 37 +First batch: fn: 0.0319, fp: 0.1480, label 0: tensor(120), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5202157497406006 and after 0.7884448766708374 +epoch: 5/20, iter: 37/42: loss:1.8006: rank:-1 +[23:09:07.893] epoch: 5/20, iter: 37/42: loss:1.8006: rank:-1 +num_clicks 50 points_length: 2431 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(208) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1932927370071411 and after 0.3807438611984253 +num_clicks 50 points_length: 1400 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 46 +First batch: fn: 0.9814, fp: 0.0041, label 0: tensor(0), label 1: tensor(353) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32991713285446167 and after 0.4417172074317932 +num_clicks 50 points_length: 1040 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 64 +First batch: fn: 0.9656, fp: 0.0050, label 0: tensor(1), label 1: tensor(205) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36263859272003174 and after 0.45249271392822266 +num_clicks 50 points_length: 1057 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 154 +First batch: fn: 0.9532, fp: 0.0043, label 0: tensor(0), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3646802306175232 and after 0.47713354229927063 +num_clicks 50 points_length: 910 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 124 +First batch: fn: 0.9383, fp: 0.0042, label 0: tensor(0), label 1: tensor(200) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4176909923553467 and after 0.4805763363838196 +num_clicks 50 points_length: 884 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 201 +First batch: fn: 0.9360, fp: 0.0044, label 0: tensor(0), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3984423875808716 and after 0.49728769063949585 +num_clicks 50 points_length: 726 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 135 +First batch: fn: 0.9301, fp: 0.0039, label 0: tensor(0), label 1: tensor(195) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39165106415748596 and after 0.508244514465332 +num_clicks 50 points_length: 696 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 77 +First batch: fn: 0.9211, fp: 0.0038, label 0: tensor(0), label 1: tensor(205) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39501798152923584 and after 0.5178260207176208 +num_clicks 50 points_length: 700 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 75 +First batch: fn: 0.9097, fp: 0.0037, label 0: tensor(0), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46698713302612305 and after 0.5144141912460327 +num_clicks 50 points_length: 700 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 123 +First batch: fn: 0.9131, fp: 0.0038, label 0: tensor(0), label 1: tensor(215) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44230103492736816 and after 0.5227459073066711 +num_clicks 50 points_length: 624 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 55 +First batch: fn: 0.9106, fp: 0.0043, label 0: tensor(1), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45454806089401245 and after 0.5343927145004272 +epoch: 5/20, iter: 38/42: loss:2.6796: rank:-1 +[23:09:22.182] epoch: 5/20, iter: 38/42: loss:2.6796: rank:-1 +num_clicks 50 points_length: 1295 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22794735431671143 and after 0.30623629689216614 +num_clicks 50 points_length: 1210 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 118 +First batch: fn: 0.9436, fp: 0.0000, label 0: tensor(0), label 1: tensor(317) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1931680589914322 and after 0.4408433139324188 +num_clicks 50 points_length: 886 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8940, fp: 0.0001, label 0: tensor(0), label 1: tensor(293) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2814275920391083 and after 0.4604998826980591 +num_clicks 50 points_length: 939 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8731, fp: 0.0002, label 0: tensor(0), label 1: tensor(270) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22648003697395325 and after 0.4737832844257355 +num_clicks 50 points_length: 863 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8685, fp: 0.0003, label 0: tensor(0), label 1: tensor(293) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1912080943584442 and after 0.48568713665008545 +num_clicks 50 points_length: 801 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8612, fp: 0.0004, label 0: tensor(0), label 1: tensor(273) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18418696522712708 and after 0.5021266937255859 +num_clicks 50 points_length: 708 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8517, fp: 0.0004, label 0: tensor(0), label 1: tensor(285) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18761643767356873 and after 0.5107120871543884 +num_clicks 50 points_length: 705 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8491, fp: 0.0003, label 0: tensor(0), label 1: tensor(222) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19090774655342102 and after 0.5122205018997192 +num_clicks 50 points_length: 746 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8459, fp: 0.0003, label 0: tensor(0), label 1: tensor(239) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19425061345100403 and after 0.5232821702957153 +num_clicks 50 points_length: 648 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8454, fp: 0.0004, label 0: tensor(0), label 1: tensor(266) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1899561882019043 and after 0.5243105888366699 +num_clicks 50 points_length: 652 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8425, fp: 0.0005, label 0: tensor(0), label 1: tensor(245) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1925620436668396 and after 0.5314784049987793 +epoch: 5/20, iter: 39/42: loss:3.7335: rank:-1 +[23:09:38.409] epoch: 5/20, iter: 39/42: loss:3.7335: rank:-1 +num_clicks 50 points_length: 32030 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4936455488204956 and after 0.23806539177894592 +num_clicks 50 points_length: 27541 dynamic_size: 13 +filter out voxels: 51 +filter out voxels: 0 +First batch: fn: 0.8361, fp: 0.0237, label 0: tensor(71), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4543107748031616 and after 0.3475034832954407 +num_clicks 50 points_length: 24950 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 4 +First batch: fn: 0.7378, fp: 0.0411, label 0: tensor(106), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4511059522628784 and after 0.4083463251590729 +num_clicks 50 points_length: 23657 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 3 +First batch: fn: 0.6411, fp: 0.0974, label 0: tensor(79), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47166115045547485 and after 0.4469414949417114 +num_clicks 50 points_length: 23315 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 3 +First batch: fn: 0.5956, fp: 0.1323, label 0: tensor(151), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4818703532218933 and after 0.47931551933288574 +num_clicks 50 points_length: 22864 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5392, fp: 0.1747, label 0: tensor(123), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5128292441368103 and after 0.5232311487197876 +num_clicks 50 points_length: 21973 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4823, fp: 0.2037, label 0: tensor(114), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5400997400283813 and after 0.5539918541908264 +num_clicks 50 points_length: 21475 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4388, fp: 0.2317, label 0: tensor(83), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.570515513420105 and after 0.5849379301071167 +num_clicks 50 points_length: 21084 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3845, fp: 0.2738, label 0: tensor(149), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5681275129318237 and after 0.5962133407592773 +num_clicks 50 points_length: 21620 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3574, fp: 0.3175, label 0: tensor(168), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5843569040298462 and after 0.6156861186027527 +num_clicks 50 points_length: 21130 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3349, fp: 0.3248, label 0: tensor(289), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5559417009353638 and after 0.6169441342353821 +epoch: 5/20, iter: 40/42: loss:2.6827: rank:-1 +[23:09:58.868] epoch: 5/20, iter: 40/42: loss:2.6827: rank:-1 +num_clicks 50 points_length: 29591 dynamic_size: 37 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48880434036254883 and after 0.4774612486362457 +num_clicks 50 points_length: 22048 dynamic_size: 14 +filter out voxels: 45 +First batch: fn: 0.6596, fp: 0.0855, label 0: tensor(328), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5372041463851929 and after 0.6805510520935059 +num_clicks 50 points_length: 14771 dynamic_size: 24 +filter out voxels: 0 +First batch: fn: 0.4683, fp: 0.0309, label 0: tensor(269), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6826210618019104 and after 0.7582861185073853 +num_clicks 50 points_length: 12456 dynamic_size: 35 +filter out voxels: 124 +First batch: fn: 0.3397, fp: 0.0812, label 0: tensor(448), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6872421503067017 and after 0.7835122346878052 +num_clicks 50 points_length: 11959 dynamic_size: 47 +filter out voxels: 109 +First batch: fn: 0.2687, fp: 0.1355, label 0: tensor(518), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6997103095054626 and after 0.8057636618614197 +num_clicks 50 points_length: 11822 dynamic_size: 6 +filter out voxels: 98 +First batch: fn: 0.1713, fp: 0.2282, label 0: tensor(501), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6815199851989746 and after 0.8205175995826721 +num_clicks 50 points_length: 11533 dynamic_size: 43 +filter out voxels: 84 +First batch: fn: 0.1091, fp: 0.2806, label 0: tensor(532), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6936944723129272 and after 0.8398141264915466 +num_clicks 50 points_length: 10583 dynamic_size: 11 +filter out voxels: 84 +First batch: fn: 0.0625, fp: 0.2952, label 0: tensor(509), label 1: tensor(366) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7200498580932617 and after 0.8522260785102844 +num_clicks 50 points_length: 9858 dynamic_size: 28 +filter out voxels: 82 +First batch: fn: 0.0394, fp: 0.2938, label 0: tensor(527), label 1: tensor(217) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7193180918693542 and after 0.8662070035934448 +num_clicks 50 points_length: 8810 dynamic_size: 15 +filter out voxels: 84 +First batch: fn: 0.0362, fp: 0.2615, label 0: tensor(512), label 1: tensor(246) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7238994836807251 and after 0.8722586035728455 +num_clicks 50 points_length: 8405 dynamic_size: 10 +filter out voxels: 104 +First batch: fn: 0.0302, fp: 0.2538, label 0: tensor(510), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7222391963005066 and after 0.8753537535667419 +epoch: 5/20, iter: 41/42: loss:1.4579: rank:-1 +[23:10:10.912] epoch: 5/20, iter: 41/42: loss:1.4579: rank:-1 +current lr: 3.960400000000001e-05 +[23:10:10.913] - Train metrics: 2.5931175 +found empty patch +found empty patch +num_clicks 10 points_length: 2119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:14.577] dice before refine 0.00019492227875161916 and after 0.5012001991271973, label 0: tensor(0, device='cuda:0'), label 1: tensor(162, device='cuda:0') +num_clicks 10 points_length: 2078 dynamic_size: 10 +filter out voxels: 969 +First batch: fn: 0.5073, fp: 0.4733, label 0: tensor(35), label 1: tensor(225) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1498 dynamic_size: 10 +filter out voxels: 372 +First batch: fn: 0.0680, fp: 0.6390, label 0: tensor(252), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1032 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0571, fp: 0.4299, label 0: tensor(234), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 739 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0628, fp: 0.2860, label 0: tensor(168), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 664 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0783, fp: 0.2350, label 0: tensor(148), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 653 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0642, fp: 0.2440, label 0: tensor(156), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 624 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0708, fp: 0.2237, label 0: tensor(205), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 579 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0684, fp: 0.2048, label 0: tensor(173), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 566 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0675, fp: 0.1996, label 0: tensor(203), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 564 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0684, fp: 0.1977, label 0: tensor(212), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:19.644] dice before refine 0.3154827058315277 and after 0.8735632300376892, label 0: tensor(212, device='cuda:0'), label 1: tensor(81, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4016 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(413) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:20.105] dice before refine 0.006712254136800766 and after 0.36816471815109253, label 0: tensor(0, device='cuda:0'), label 1: tensor(413, device='cuda:0') +num_clicks 10 points_length: 10249 dynamic_size: 10 +filter out voxels: 6674 +First batch: fn: 0.2565, fp: 2.2956, label 0: tensor(509), label 1: tensor(336) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7119 dynamic_size: 10 +filter out voxels: 3572 +First batch: fn: 0.0802, fp: 1.6925, label 0: tensor(509), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5992 dynamic_size: 10 +filter out voxels: 2841 +First batch: fn: 0.0593, fp: 1.4328, label 0: tensor(509), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5007 dynamic_size: 10 +filter out voxels: 2782 +First batch: fn: 0.0461, fp: 1.2007, label 0: tensor(544), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4401 dynamic_size: 10 +filter out voxels: 2665 +First batch: fn: 0.0687, fp: 1.0271, label 0: tensor(428), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4144 dynamic_size: 10 +filter out voxels: 2710 +First batch: fn: 0.0784, fp: 0.9534, label 0: tensor(262), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4534 dynamic_size: 10 +filter out voxels: 2977 +First batch: fn: 0.0837, fp: 1.0453, label 0: tensor(291), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4552 dynamic_size: 10 +filter out voxels: 2968 +First batch: fn: 0.0660, fp: 1.0675, label 0: tensor(380), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4626 dynamic_size: 10 +filter out voxels: 2952 +First batch: fn: 0.0655, fp: 1.0864, label 0: tensor(296), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4812 dynamic_size: 10 +filter out voxels: 3138 +First batch: fn: 0.0667, fp: 1.1315, label 0: tensor(426), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:28.043] dice before refine 0.2800639271736145 and after 0.6238974928855896, label 0: tensor(426, device='cuda:0'), label 1: tensor(162, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 343 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:28.421] dice before refine 0.014538357965648174 and after 0.03994328901171684, label 0: tensor(0, device='cuda:0'), label 1: tensor(46, device='cuda:0') +num_clicks 10 points_length: 15575 dynamic_size: 10 +filter out voxels: 15334 +First batch: fn: 0.0554, fp: 45.3528, label 0: tensor(101), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3456 dynamic_size: 10 +filter out voxels: 3343 +First batch: fn: 0.0933, fp: 9.9825, label 0: tensor(58), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1145 dynamic_size: 10 +filter out voxels: 1063 +First batch: fn: 0.0729, fp: 3.2653, label 0: tensor(43), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 510 dynamic_size: 10 +filter out voxels: 426 +First batch: fn: 0.0933, fp: 1.3936, label 0: tensor(32), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1013 dynamic_size: 10 +filter out voxels: 904 +First batch: fn: 0.0466, fp: 2.9067, label 0: tensor(56), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1402 dynamic_size: 10 +filter out voxels: 1314 +First batch: fn: 0.0350, fp: 4.0525, label 0: tensor(46), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1558 dynamic_size: 10 +filter out voxels: 1477 +First batch: fn: 0.0379, fp: 4.5044, label 0: tensor(39), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1062 dynamic_size: 10 +filter out voxels: 981 +First batch: fn: 0.0379, fp: 3.0583, label 0: tensor(60), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1430 dynamic_size: 10 +filter out voxels: 1352 +First batch: fn: 0.0408, fp: 4.1283, label 0: tensor(38), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 751 dynamic_size: 10 +filter out voxels: 672 +First batch: fn: 0.0437, fp: 2.1458, label 0: tensor(41), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:31.787] dice before refine 0.11360239237546921 and after 0.335201233625412, label 0: tensor(41, device='cuda:0'), label 1: tensor(9, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 2248 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(218) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:32.207] dice before refine 0.014351334422826767 and after 0.12210559099912643, label 0: tensor(0, device='cuda:0'), label 1: tensor(218, device='cuda:0') +num_clicks 10 points_length: 22748 dynamic_size: 10 +filter out voxels: 245 +First batch: fn: 0.2963, fp: 9.8230, label 0: tensor(510), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5767 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1259, fp: 2.4395, label 0: tensor(495), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2493 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1028, fp: 1.0062, label 0: tensor(319), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1072 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0983, fp: 0.3786, label 0: tensor(214), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 917 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1005, fp: 0.3074, label 0: tensor(128), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 870 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0996, fp: 0.2874, label 0: tensor(215), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 811 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0979, fp: 0.2629, label 0: tensor(148), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 802 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0819, fp: 0.2749, label 0: tensor(182), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 801 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0747, fp: 0.2816, label 0: tensor(186), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 760 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0747, fp: 0.2633, label 0: tensor(159), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:38.156] dice before refine 0.4607190489768982 and after 0.8460918664932251, label 0: tensor(159, device='cuda:0'), label 1: tensor(68, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3675 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(337) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:38.582] dice before refine 0.001035241293720901 and after 0.24728693068027496, label 0: tensor(0, device='cuda:0'), label 1: tensor(337, device='cuda:0') +num_clicks 10 points_length: 16577 dynamic_size: 10 +filter out voxels: 9521 +First batch: fn: 0.2590, fp: 4.2517, label 0: tensor(509), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7631 dynamic_size: 10 +filter out voxels: 2288 +First batch: fn: 0.1309, fp: 1.9456, label 0: tensor(509), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4783 dynamic_size: 10 +filter out voxels: 1507 +First batch: fn: 0.0824, fp: 1.2190, label 0: tensor(510), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3313 dynamic_size: 10 +filter out voxels: 1081 +First batch: fn: 0.0713, fp: 0.8302, label 0: tensor(539), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2678 dynamic_size: 10 +filter out voxels: 970 +First batch: fn: 0.0852, fp: 0.6435, label 0: tensor(397), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2386 dynamic_size: 10 +filter out voxels: 797 +First batch: fn: 0.0724, fp: 0.5769, label 0: tensor(382), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2093 dynamic_size: 10 +filter out voxels: 818 +First batch: fn: 0.0784, fp: 0.4912, label 0: tensor(280), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1976 dynamic_size: 10 +filter out voxels: 777 +First batch: fn: 0.0697, fp: 0.4680, label 0: tensor(240), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1932 dynamic_size: 10 +filter out voxels: 797 +First batch: fn: 0.0615, fp: 0.4642, label 0: tensor(249), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2030 dynamic_size: 10 +filter out voxels: 932 +First batch: fn: 0.0637, fp: 0.4887, label 0: tensor(282), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:45.781] dice before refine 0.31890955567359924 and after 0.7894070148468018, label 0: tensor(282, device='cuda:0'), label 1: tensor(123, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.5207929306409576 +[23:10:46.411] epoch: 5/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.5207929306409576 stich left and right side (total size): 1 +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:46.948] dice before refine 0.012387851253151894 and after 0.10111485421657562, label 0: tensor(0, device='cuda:0'), label 1: tensor(148, device='cuda:0') +num_clicks 10 points_length: 17335 dynamic_size: 10 +filter out voxels: 8859 +First batch: fn: 0.6895, fp: 4.8312, label 0: tensor(509), label 1: tensor(291) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15144 dynamic_size: 10 +filter out voxels: 6340 +First batch: fn: 0.2497, fp: 4.5732, label 0: tensor(508), label 1: tensor(156) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15741 dynamic_size: 10 +filter out voxels: 5835 +First batch: fn: 0.0962, fp: 4.9169, label 0: tensor(510), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15728 dynamic_size: 10 +filter out voxels: 6307 +First batch: fn: 0.0643, fp: 4.9446, label 0: tensor(510), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15897 dynamic_size: 10 +filter out voxels: 6269 +First batch: fn: 0.0427, fp: 5.0201, label 0: tensor(510), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15300 dynamic_size: 10 +filter out voxels: 6321 +First batch: fn: 0.0433, fp: 4.8293, label 0: tensor(510), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14798 dynamic_size: 10 +filter out voxels: 6207 +First batch: fn: 0.0475, fp: 4.6653, label 0: tensor(510), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14330 dynamic_size: 10 +filter out voxels: 6168 +First batch: fn: 0.0497, fp: 4.5140, label 0: tensor(510), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13886 dynamic_size: 10 +filter out voxels: 5697 +First batch: fn: 0.0490, fp: 4.3732, label 0: tensor(510), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14523 dynamic_size: 10 +filter out voxels: 5940 +First batch: fn: 0.0481, fp: 4.5771, label 0: tensor(510), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:54.070] dice before refine 0.12304190546274185 and after 0.3018389940261841, label 0: tensor(510, device='cuda:0'), label 1: tensor(36, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:10:54.447] dice before refine 0.07424689084291458 and after 0.18892981112003326, label 0: tensor(0, device='cuda:0'), label 1: tensor(99, device='cuda:0') +num_clicks 10 points_length: 14536 dynamic_size: 10 +filter out voxels: 5751 +First batch: fn: 0.4608, fp: 4.1685, label 0: tensor(506), label 1: tensor(274) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8347 dynamic_size: 10 +filter out voxels: 1900 +First batch: fn: 0.1366, fp: 2.5217, label 0: tensor(547), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6242 dynamic_size: 10 +filter out voxels: 1613 +First batch: fn: 0.0793, fp: 1.9086, label 0: tensor(367), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5869 dynamic_size: 10 +filter out voxels: 1564 +First batch: fn: 0.0637, fp: 1.8054, label 0: tensor(255), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5956 dynamic_size: 10 +filter out voxels: 1538 +First batch: fn: 0.0449, fp: 1.8519, label 0: tensor(510), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4906 dynamic_size: 10 +filter out voxels: 1506 +First batch: fn: 0.0382, fp: 1.5242, label 0: tensor(528), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3684 dynamic_size: 10 +filter out voxels: 1119 +First batch: fn: 0.0379, fp: 1.1354, label 0: tensor(463), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2719 dynamic_size: 10 +filter out voxels: 1051 +First batch: fn: 0.0360, fp: 0.8299, label 0: tensor(280), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1903 dynamic_size: 10 +filter out voxels: 1004 +First batch: fn: 0.0449, fp: 0.5611, label 0: tensor(193), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1532 dynamic_size: 10 +filter out voxels: 754 +First batch: fn: 0.0936, fp: 0.3943, label 0: tensor(104), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:01.024] dice before refine 0.32176321744918823 and after 0.7891549468040466, label 0: tensor(104, device='cuda:0'), label 1: tensor(37, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:01.422] dice before refine 0.010367555543780327 and after 0.07656821608543396, label 0: tensor(0, device='cuda:0'), label 1: tensor(91, device='cuda:0') +num_clicks 10 points_length: 17415 dynamic_size: 10 +filter out voxels: 11281 +First batch: fn: 0.7701, fp: 4.7761, label 0: tensor(509), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10517 dynamic_size: 10 +filter out voxels: 3813 +First batch: fn: 0.6197, fp: 2.7296, label 0: tensor(370), label 1: tensor(300) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12985 dynamic_size: 10 +filter out voxels: 5025 +First batch: fn: 0.1287, fp: 4.0067, label 0: tensor(510), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10862 dynamic_size: 10 +filter out voxels: 3559 +First batch: fn: 0.0452, fp: 3.4140, label 0: tensor(510), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9306 dynamic_size: 10 +filter out voxels: 2914 +First batch: fn: 0.0331, fp: 2.9306, label 0: tensor(509), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8456 dynamic_size: 10 +filter out voxels: 2746 +First batch: fn: 0.0322, fp: 2.6608, label 0: tensor(500), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7677 dynamic_size: 10 +filter out voxels: 2621 +First batch: fn: 0.0331, fp: 2.4118, label 0: tensor(389), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7042 dynamic_size: 10 +filter out voxels: 2427 +First batch: fn: 0.0347, fp: 2.2080, label 0: tensor(507), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6509 dynamic_size: 10 +filter out voxels: 2349 +First batch: fn: 0.0328, fp: 2.0401, label 0: tensor(443), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6020 dynamic_size: 10 +filter out voxels: 2249 +First batch: fn: 0.0357, fp: 1.8815, label 0: tensor(540), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:08.141] dice before refine 0.22277195751667023 and after 0.5084859728813171, label 0: tensor(540, device='cuda:0'), label 1: tensor(45, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(175) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:08.520] dice before refine 0.07227316498756409 and after 0.2288685292005539, label 0: tensor(0, device='cuda:0'), label 1: tensor(175, device='cuda:0') +num_clicks 10 points_length: 14980 dynamic_size: 10 +filter out voxels: 8736 +First batch: fn: 0.2920, fp: 4.4787, label 0: tensor(509), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5816 dynamic_size: 10 +filter out voxels: 1399 +First batch: fn: 0.1688, fp: 1.6834, label 0: tensor(374), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4925 dynamic_size: 10 +filter out voxels: 971 +First batch: fn: 0.0965, fp: 1.4720, label 0: tensor(292), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4300 dynamic_size: 10 +filter out voxels: 867 +First batch: fn: 0.0596, fp: 1.3099, label 0: tensor(396), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3133 dynamic_size: 10 +filter out voxels: 758 +First batch: fn: 0.0688, fp: 0.9290, label 0: tensor(374), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2358 dynamic_size: 10 +filter out voxels: 667 +First batch: fn: 0.0510, fp: 0.7000, label 0: tensor(307), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1342 dynamic_size: 10 +filter out voxels: 555 +First batch: fn: 0.0554, fp: 0.3720, label 0: tensor(228), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1106 dynamic_size: 10 +filter out voxels: 410 +First batch: fn: 0.0946, fp: 0.2576, label 0: tensor(130), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1933 dynamic_size: 10 +filter out voxels: 794 +First batch: fn: 0.0127, fp: 0.6029, label 0: tensor(240), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1355 dynamic_size: 10 +filter out voxels: 530 +First batch: fn: 0.0140, fp: 0.4175, label 0: tensor(149), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:14.251] dice before refine 0.5882184505462646 and after 0.8379629850387573, label 0: tensor(149, device='cuda:0'), label 1: tensor(20, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +0.5580316199497743 +[23:11:15.492] epoch: 5/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.5580316199497743 stich left and right side (total size): 1 +num_clicks 10 points_length: 23364 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:16.020] dice before refine 0.0003270244924351573 and after 0.2754277288913727, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 19904 dynamic_size: 10 +filter out voxels: 249 +First batch: fn: 0.8381, fp: 0.0138, label 0: tensor(35), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13445 dynamic_size: 10 +filter out voxels: 64 +First batch: fn: 0.5647, fp: 0.0107, label 0: tensor(68), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9441 dynamic_size: 10 +filter out voxels: 20 +First batch: fn: 0.3686, fp: 0.0355, label 0: tensor(231), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6662 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.2537, fp: 0.0315, label 0: tensor(180), label 1: tensor(464) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4248 dynamic_size: 10 +filter out voxels: 60 +First batch: fn: 0.1416, fp: 0.0402, label 0: tensor(168), label 1: tensor(332) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3821 dynamic_size: 10 +filter out voxels: 82 +First batch: fn: 0.1040, fp: 0.0595, label 0: tensor(195), label 1: tensor(436) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3208 dynamic_size: 10 +filter out voxels: 117 +First batch: fn: 0.0536, fp: 0.0837, label 0: tensor(385), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3226 dynamic_size: 10 +filter out voxels: 81 +First batch: fn: 0.0887, fp: 0.0493, label 0: tensor(182), label 1: tensor(238) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2697 dynamic_size: 10 +filter out voxels: 103 +First batch: fn: 0.0489, fp: 0.0665, label 0: tensor(227), label 1: tensor(144) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2695 dynamic_size: 10 +filter out voxels: 78 +First batch: fn: 0.0609, fp: 0.0545, label 0: tensor(264), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:23.159] dice before refine 0.7301410436630249 and after 0.944639265537262, label 0: tensor(264, device='cuda:0'), label 1: tensor(137, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 88105 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:23.731] dice before refine 0.5345797538757324 and after 0.3861123323440552, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 67508 dynamic_size: 10 +filter out voxels: 155 +First batch: fn: 0.7590, fp: 0.0072, label 0: tensor(105), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 45435 dynamic_size: 10 +filter out voxels: 67 +First batch: fn: 0.5092, fp: 0.0065, label 0: tensor(205), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38437 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.4336, fp: 0.0027, label 0: tensor(142), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34593 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.3857, fp: 0.0070, label 0: tensor(247), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30562 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.3423, fp: 0.0046, label 0: tensor(224), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28156 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.3128, fp: 0.0068, label 0: tensor(194), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25397 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.2706, fp: 0.0177, label 0: tensor(483), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22926 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.2448, fp: 0.0154, label 0: tensor(393), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19494 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.2033, fp: 0.0179, label 0: tensor(505), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16778 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.1679, fp: 0.0225, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:33.087] dice before refine 0.8082624673843384 and after 0.9138917326927185, label 0: tensor(500, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 204709 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:33.784] dice before refine 0.33487507700920105 and after 0.08559856563806534, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 195745 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.9552, fp: 0.0010, label 0: tensor(47), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 183735 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8975, fp: 0.0000, label 0: tensor(5), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 176154 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8598, fp: 0.0007, label 0: tensor(47), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 175904 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8589, fp: 0.0004, label 0: tensor(36), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 169434 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8268, fp: 0.0009, label 0: tensor(79), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 166034 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8103, fp: 0.0007, label 0: tensor(69), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 157670 dynamic_size: 10 +filter out voxels: 35 +First batch: fn: 0.7682, fp: 0.0020, label 0: tensor(134), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 153268 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.7474, fp: 0.0014, label 0: tensor(52), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 148089 dynamic_size: 10 +filter out voxels: 50 +First batch: fn: 0.7207, fp: 0.0027, label 0: tensor(152), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 147457 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.7188, fp: 0.0015, label 0: tensor(94), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:42.914] dice before refine 0.5181309580802917 and after 0.45562544465065, label 0: tensor(94, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 347521 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:43.762] dice before refine 0.38770532608032227 and after 0.11950626224279404, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 325493 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9364, fp: 0.0002, label 0: tensor(21), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 305022 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8776, fp: 0.0001, label 0: tensor(28), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 292594 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.8419, fp: 0.0001, label 0: tensor(7), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 282550 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.8126, fp: 0.0004, label 0: tensor(62), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 275651 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.7930, fp: 0.0002, label 0: tensor(24), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 269679 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.7758, fp: 0.0002, label 0: tensor(24), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 256589 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.7379, fp: 0.0004, label 0: tensor(62), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 255246 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.7342, fp: 0.0003, label 0: tensor(27), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 254025 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.7306, fp: 0.0003, label 0: tensor(47), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 244255 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.7026, fp: 0.0003, label 0: tensor(26), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:53.474] dice before refine 0.6048130989074707 and after 0.48827627301216125, label 0: tensor(26, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25099 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:11:53.933] dice before refine 0.1586432158946991 and after 0.3301394283771515, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 20274 dynamic_size: 10 +filter out voxels: 127 +First batch: fn: 0.8009, fp: 0.0068, label 0: tensor(30), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14539 dynamic_size: 10 +filter out voxels: 152 +First batch: fn: 0.5496, fp: 0.0296, label 0: tensor(187), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11581 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.4155, fp: 0.0459, label 0: tensor(231), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9315 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.3106, fp: 0.0606, label 0: tensor(343), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6372 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1973, fp: 0.0566, label 0: tensor(336), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4662 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.1175, fp: 0.0682, label 0: tensor(297), label 1: tensor(442) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3760 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.0607, fp: 0.0891, label 0: tensor(338), label 1: tensor(237) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3671 dynamic_size: 10 +filter out voxels: 20 +First batch: fn: 0.0626, fp: 0.0836, label 0: tensor(337), label 1: tensor(298) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3352 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.0405, fp: 0.0930, label 0: tensor(384), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3153 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.0437, fp: 0.0819, label 0: tensor(357), label 1: tensor(261) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:01.988] dice before refine 0.7743406295776367 and after 0.9435120224952698, label 0: tensor(357, device='cuda:0'), label 1: tensor(261, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 82461 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:02.585] dice before refine 0.24002790451049805 and after 0.2283528745174408, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 72024 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8708, fp: 0.0027, label 0: tensor(112), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53760 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.6446, fp: 0.0073, label 0: tensor(279), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39964 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4804, fp: 0.0042, label 0: tensor(150), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31118 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3673, fp: 0.0100, label 0: tensor(228), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27643 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3270, fp: 0.0082, label 0: tensor(286), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23831 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2810, fp: 0.0080, label 0: tensor(267), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19500 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.2264, fp: 0.0101, label 0: tensor(296), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16212 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1832, fp: 0.0134, label 0: tensor(412), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13194 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1438, fp: 0.0162, label 0: tensor(352), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11134 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.1098, fp: 0.0252, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:12.268] dice before refine 0.8325729370117188 and after 0.9422819018363953, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 308412 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:13.049] dice before refine 0.5113943219184875 and after 0.16282027959823608, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 281099 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9114, fp: 0.0001, label 0: tensor(15), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 259391 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8410, fp: 0.0001, label 0: tensor(17), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 254672 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8257, fp: 0.0001, label 0: tensor(15), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 240963 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7811, fp: 0.0002, label 0: tensor(23), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 232387 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7532, fp: 0.0002, label 0: tensor(7), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 226606 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7344, fp: 0.0003, label 0: tensor(20), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 222638 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7217, fp: 0.0002, label 0: tensor(14), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 220719 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7155, fp: 0.0002, label 0: tensor(20), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 215583 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6989, fp: 0.0001, label 0: tensor(18), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 208377 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6754, fp: 0.0002, label 0: tensor(40), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:22.358] dice before refine 0.6117667555809021 and after 0.5156648755073547, label 0: tensor(40, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 355661 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:23.192] dice before refine 0.3786715865135193 and after 0.09341904520988464, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 338472 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9510, fp: 0.0007, label 0: tensor(88), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 317660 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8929, fp: 0.0003, label 0: tensor(37), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 301995 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8485, fp: 0.0006, label 0: tensor(50), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 294167 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8265, fp: 0.0006, label 0: tensor(70), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 282111 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7919, fp: 0.0013, label 0: tensor(160), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 279826 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7861, fp: 0.0006, label 0: tensor(103), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 272011 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7644, fp: 0.0004, label 0: tensor(52), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 266119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7479, fp: 0.0003, label 0: tensor(53), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 258791 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7273, fp: 0.0003, label 0: tensor(40), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 251481 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7068, fp: 0.0003, label 0: tensor(36), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:33.448] dice before refine 0.530225932598114 and after 0.46147459745407104, label 0: tensor(36, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.3855675702745264 +[23:12:34.130] epoch: 5/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.3855675702745264 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:34.654] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 1047 dynamic_size: 10 +filter out voxels: 1014 +First batch: fn: 1.0000, fp: 30.7273, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 75 dynamic_size: 10 +filter out voxels: 42 +First batch: fn: 1.0000, fp: 1.2727, label 0: tensor(5), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 1.0000, fp: 0.5152, label 0: tensor(3), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 1.0000, fp: 0.8182, label 0: tensor(4), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 40 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 1.0000, fp: 0.2121, label 0: tensor(1), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 303 dynamic_size: 10 +filter out voxels: 270 +First batch: fn: 1.0000, fp: 8.1818, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 1.0000, fp: 0.4848, label 0: tensor(3), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 1.0000, fp: 0.4848, label 0: tensor(4), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 1.0000, fp: 0.0303, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 498 dynamic_size: 10 +filter out voxels: 465 +First batch: fn: 1.0000, fp: 14.0909, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:37.546] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:37.927] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 5462 dynamic_size: 10 +filter out voxels: 5429 +First batch: fn: 1.0000, fp: 164.5152, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2468 dynamic_size: 10 +filter out voxels: 2435 +First batch: fn: 1.0000, fp: 73.7879, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2497 dynamic_size: 10 +filter out voxels: 2464 +First batch: fn: 1.0000, fp: 74.6667, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2502 dynamic_size: 10 +filter out voxels: 2469 +First batch: fn: 1.0000, fp: 74.8182, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2417 dynamic_size: 10 +filter out voxels: 2384 +First batch: fn: 1.0000, fp: 72.2424, label 0: tensor(9), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2304 dynamic_size: 10 +filter out voxels: 2271 +First batch: fn: 1.0000, fp: 68.8182, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2214 dynamic_size: 10 +filter out voxels: 2181 +First batch: fn: 1.0000, fp: 66.0909, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2168 dynamic_size: 10 +filter out voxels: 2135 +First batch: fn: 1.0000, fp: 64.6970, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2053 dynamic_size: 10 +filter out voxels: 2020 +First batch: fn: 1.0000, fp: 61.2121, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1896 dynamic_size: 10 +filter out voxels: 1863 +First batch: fn: 1.0000, fp: 56.4545, label 0: tensor(10), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:40.801] dice before refine 0.0 and after 0.0, label 0: tensor(10, device='cuda:0'), label 1: tensor(0, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.0 +[23:12:41.188] epoch: 5/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.0 stich left and right side (total size): 1 +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(194) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:41.648] dice before refine 0.0 and after 0.4227820336818695, label 0: tensor(0, device='cuda:0'), label 1: tensor(194, device='cuda:0') +num_clicks 10 points_length: 2635 dynamic_size: 10 +filter out voxels: 2094 +First batch: fn: 0.3127, fp: 1.5641, label 0: tensor(42), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3440 dynamic_size: 10 +filter out voxels: 2858 +First batch: fn: 0.0833, fp: 2.3668, label 0: tensor(110), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4178 dynamic_size: 10 +filter out voxels: 3687 +First batch: fn: 0.1068, fp: 2.8689, label 0: tensor(88), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4954 dynamic_size: 10 +filter out voxels: 4531 +First batch: fn: 0.0962, fp: 3.4323, label 0: tensor(83), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4723 dynamic_size: 10 +filter out voxels: 4320 +First batch: fn: 0.0940, fp: 3.2699, label 0: tensor(89), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4208 dynamic_size: 10 +filter out voxels: 3825 +First batch: fn: 0.0976, fp: 2.8996, label 0: tensor(94), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3910 dynamic_size: 10 +filter out voxels: 3542 +First batch: fn: 0.0954, fp: 2.6895, label 0: tensor(55), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4505 dynamic_size: 10 +filter out voxels: 4148 +First batch: fn: 0.0805, fp: 3.1282, label 0: tensor(54), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4926 dynamic_size: 10 +filter out voxels: 4578 +First batch: fn: 0.0762, fp: 3.4323, label 0: tensor(71), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5064 dynamic_size: 10 +filter out voxels: 4713 +First batch: fn: 0.0712, fp: 3.5356, label 0: tensor(94), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:45.509] dice before refine 0.05796118825674057 and after 0.36731231212615967, label 0: tensor(94, device='cuda:0'), label 1: tensor(36, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4392 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(498) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:45.931] dice before refine 0.0 and after 0.5527812242507935, label 0: tensor(0, device='cuda:0'), label 1: tensor(498, device='cuda:0') +num_clicks 10 points_length: 5427 dynamic_size: 10 +filter out voxels: 3794 +First batch: fn: 0.2363, fp: 0.9993, label 0: tensor(141), label 1: tensor(192) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10104 dynamic_size: 10 +filter out voxels: 8475 +First batch: fn: 0.0735, fp: 2.2270, label 0: tensor(328), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9448 dynamic_size: 10 +filter out voxels: 7817 +First batch: fn: 0.0389, fp: 2.1122, label 0: tensor(301), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9101 dynamic_size: 10 +filter out voxels: 7594 +First batch: fn: 0.0314, fp: 2.0408, label 0: tensor(327), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8290 dynamic_size: 10 +filter out voxels: 6967 +First batch: fn: 0.0332, fp: 1.8543, label 0: tensor(251), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8373 dynamic_size: 10 +filter out voxels: 7198 +First batch: fn: 0.0367, fp: 1.8698, label 0: tensor(279), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8130 dynamic_size: 10 +filter out voxels: 7076 +First batch: fn: 0.0364, fp: 1.8147, label 0: tensor(211), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8684 dynamic_size: 10 +filter out voxels: 7694 +First batch: fn: 0.0355, fp: 1.9417, label 0: tensor(235), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8533 dynamic_size: 10 +filter out voxels: 7626 +First batch: fn: 0.0389, fp: 1.9039, label 0: tensor(164), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9194 dynamic_size: 10 +filter out voxels: 8329 +First batch: fn: 0.0417, fp: 2.0517, label 0: tensor(231), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:51.652] dice before refine 0.14597204327583313 and after 0.4777544140815735, label 0: tensor(231, device='cuda:0'), label 1: tensor(71, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(225) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:52.030] dice before refine 0.0 and after 0.8037456274032593, label 0: tensor(0, device='cuda:0'), label 1: tensor(225, device='cuda:0') +num_clicks 10 points_length: 503 dynamic_size: 10 +filter out voxels: 45 +First batch: fn: 0.2664, fp: 0.0919, label 0: tensor(35), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 419 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.1453, fp: 0.1531, label 0: tensor(56), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 411 dynamic_size: 10 +filter out voxels: 40 +First batch: fn: 0.0869, fp: 0.2058, label 0: tensor(54), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 409 dynamic_size: 10 +filter out voxels: 41 +First batch: fn: 0.0776, fp: 0.2137, label 0: tensor(77), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 378 dynamic_size: 10 +filter out voxels: 35 +First batch: fn: 0.0833, fp: 0.1859, label 0: tensor(100), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 356 dynamic_size: 10 +filter out voxels: 31 +First batch: fn: 0.0819, fp: 0.1717, label 0: tensor(45), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 353 dynamic_size: 10 +filter out voxels: 40 +First batch: fn: 0.0748, fp: 0.1766, label 0: tensor(83), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 366 dynamic_size: 10 +filter out voxels: 31 +First batch: fn: 0.0791, fp: 0.1816, label 0: tensor(71), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 349 dynamic_size: 10 +filter out voxels: 37 +First batch: fn: 0.0698, fp: 0.1788, label 0: tensor(68), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 344 dynamic_size: 10 +filter out voxels: 35 +First batch: fn: 0.0712, fp: 0.1738, label 0: tensor(66), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:55.786] dice before refine 0.4616161584854126 and after 0.8857239484786987, label 0: tensor(66, device='cuda:0'), label 1: tensor(36, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4409 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:12:56.203] dice before refine 0.0 and after 0.6152201294898987, label 0: tensor(0, device='cuda:0'), label 1: tensor(526, device='cuda:0') +num_clicks 10 points_length: 4318 dynamic_size: 10 +filter out voxels: 2539 +First batch: fn: 0.2171, fp: 0.7623, label 0: tensor(182), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4826 dynamic_size: 10 +filter out voxels: 1965 +First batch: fn: 0.0635, fp: 1.0311, label 0: tensor(496), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2513 dynamic_size: 10 +filter out voxels: 504 +First batch: fn: 0.0531, fp: 0.5169, label 0: tensor(321), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1766 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.0447, fp: 0.3559, label 0: tensor(283), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1655 dynamic_size: 10 +filter out voxels: 48 +First batch: fn: 0.0404, fp: 0.3350, label 0: tensor(279), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1498 dynamic_size: 10 +filter out voxels: 44 +First batch: fn: 0.0370, fp: 0.3028, label 0: tensor(345), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1230 dynamic_size: 10 +filter out voxels: 37 +First batch: fn: 0.0442, fp: 0.2347, label 0: tensor(265), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1077 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.0424, fp: 0.2019, label 0: tensor(183), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1064 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.0424, fp: 0.1989, label 0: tensor(226), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1013 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.0413, fp: 0.1885, label 0: tensor(267), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:02.159] dice before refine 0.5743051171302795 and after 0.8957602977752686, label 0: tensor(267, device='cuda:0'), label 1: tensor(61, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:02.544] dice before refine 0.0 and after 0.5444589257240295, label 0: tensor(0, device='cuda:0'), label 1: tensor(179, device='cuda:0') +num_clicks 10 points_length: 1747 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.5960, fp: 0.0801, label 0: tensor(48), label 1: tensor(303) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1185 dynamic_size: 10 +filter out voxels: 90 +First batch: fn: 0.0809, fp: 0.3777, label 0: tensor(190), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 965 dynamic_size: 10 +filter out voxels: 77 +First batch: fn: 0.0445, fp: 0.3289, label 0: tensor(127), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 876 dynamic_size: 10 +filter out voxels: 63 +First batch: fn: 0.0522, fp: 0.2868, label 0: tensor(92), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 837 dynamic_size: 10 +filter out voxels: 60 +First batch: fn: 0.0461, fp: 0.2779, label 0: tensor(85), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 803 dynamic_size: 10 +filter out voxels: 69 +First batch: fn: 0.0445, fp: 0.2663, label 0: tensor(164), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 711 dynamic_size: 10 +filter out voxels: 54 +First batch: fn: 0.0495, fp: 0.2256, label 0: tensor(118), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 665 dynamic_size: 10 +filter out voxels: 49 +First batch: fn: 0.0580, fp: 0.1993, label 0: tensor(87), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 647 dynamic_size: 10 +filter out voxels: 45 +First batch: fn: 0.0588, fp: 0.1916, label 0: tensor(65), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 656 dynamic_size: 10 +filter out voxels: 49 +First batch: fn: 0.0461, fp: 0.2078, label 0: tensor(136), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:06.873] dice before refine 0.6828709244728088 and after 0.8856061697006226, label 0: tensor(136, device='cuda:0'), label 1: tensor(48, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8531 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:07.305] dice before refine 0.4969111382961273 and after 0.6570879817008972, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 5179 dynamic_size: 10 +filter out voxels: 279 +First batch: fn: 0.4184, fp: 0.1887, label 0: tensor(181), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5026 dynamic_size: 10 +filter out voxels: 358 +First batch: fn: 0.0386, fp: 0.5506, label 0: tensor(510), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4147 dynamic_size: 10 +filter out voxels: 289 +First batch: fn: 0.0268, fp: 0.4593, label 0: tensor(532), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3574 dynamic_size: 10 +filter out voxels: 273 +First batch: fn: 0.0168, fp: 0.4022, label 0: tensor(492), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3202 dynamic_size: 10 +filter out voxels: 274 +First batch: fn: 0.0156, fp: 0.3597, label 0: tensor(555), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2826 dynamic_size: 10 +filter out voxels: 302 +First batch: fn: 0.0200, fp: 0.3112, label 0: tensor(403), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2698 dynamic_size: 10 +filter out voxels: 245 +First batch: fn: 0.0225, fp: 0.2938, label 0: tensor(351), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2615 dynamic_size: 10 +filter out voxels: 237 +First batch: fn: 0.0230, fp: 0.2836, label 0: tensor(424), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2471 dynamic_size: 10 +filter out voxels: 250 +First batch: fn: 0.0251, fp: 0.2646, label 0: tensor(381), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2474 dynamic_size: 10 +filter out voxels: 231 +First batch: fn: 0.0252, fp: 0.2648, label 0: tensor(304), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:14.531] dice before refine 0.7450127005577087 and after 0.8700193166732788, label 0: tensor(304, device='cuda:0'), label 1: tensor(94, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(216) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:14.916] dice before refine 0.0 and after 0.346850723028183, label 0: tensor(0, device='cuda:0'), label 1: tensor(216, device='cuda:0') +num_clicks 10 points_length: 4542 dynamic_size: 10 +filter out voxels: 2888 +First batch: fn: 0.5333, fp: 1.2245, label 0: tensor(52), label 1: tensor(190) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3497 dynamic_size: 10 +filter out voxels: 2420 +First batch: fn: 0.1459, fp: 1.2074, label 0: tensor(181), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1027 dynamic_size: 10 +filter out voxels: 159 +First batch: fn: 0.1354, fp: 0.2620, label 0: tensor(58), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 820 dynamic_size: 10 +filter out voxels: 40 +First batch: fn: 0.0886, fp: 0.2287, label 0: tensor(75), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 817 dynamic_size: 10 +filter out voxels: 46 +First batch: fn: 0.0499, fp: 0.2663, label 0: tensor(103), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 795 dynamic_size: 10 +filter out voxels: 53 +First batch: fn: 0.0437, fp: 0.2639, label 0: tensor(196), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 725 dynamic_size: 10 +filter out voxels: 42 +First batch: fn: 0.0491, fp: 0.2314, label 0: tensor(71), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 678 dynamic_size: 10 +filter out voxels: 41 +First batch: fn: 0.0499, fp: 0.2125, label 0: tensor(117), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 675 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.0542, fp: 0.2070, label 0: tensor(108), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 624 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.0592, fp: 0.1823, label 0: tensor(118), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:19.132] dice before refine 0.7007364630699158 and after 0.8872647285461426, label 0: tensor(118, device='cuda:0'), label 1: tensor(44, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:19.556] dice before refine 0.39072147011756897 and after 0.5598410964012146, label 0: tensor(0, device='cuda:0'), label 1: tensor(528, device='cuda:0') +num_clicks 10 points_length: 7977 dynamic_size: 10 +filter out voxels: 3531 +First batch: fn: 0.4065, fp: 0.5267, label 0: tensor(136), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5813 dynamic_size: 10 +filter out voxels: 2601 +First batch: fn: 0.0340, fp: 0.6460, label 0: tensor(408), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3210 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.0248, fp: 0.3507, label 0: tensor(509), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2757 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.0227, fp: 0.2998, label 0: tensor(391), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2357 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.0185, fp: 0.2573, label 0: tensor(361), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2079 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.0195, fp: 0.2237, label 0: tensor(265), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1955 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.0198, fp: 0.2089, label 0: tensor(221), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1827 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.0191, fp: 0.1947, label 0: tensor(248), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1683 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.0225, fp: 0.1744, label 0: tensor(395), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1522 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.0291, fp: 0.1489, label 0: tensor(221), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:26.096] dice before refine 0.8368059396743774 and after 0.9141128063201904, label 0: tensor(221, device='cuda:0'), label 1: tensor(81, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +0.6085449619726702 +[23:13:26.781] epoch: 5/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.6085449619726702 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:27.286] dice before refine 0.0 and after 0.32078009843826294, label 0: tensor(0, device='cuda:0'), label 1: tensor(143, device='cuda:0') +num_clicks 10 points_length: 2020 dynamic_size: 10 +filter out voxels: 942 +First batch: fn: 0.6150, fp: 1.0153, label 0: tensor(71), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 896 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.5004, fp: 0.2228, label 0: tensor(68), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 762 dynamic_size: 10 +filter out voxels: 47 +First batch: fn: 0.2437, fp: 0.3713, label 0: tensor(69), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 723 dynamic_size: 10 +filter out voxels: 43 +First batch: fn: 0.1655, fp: 0.4181, label 0: tensor(137), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 620 dynamic_size: 10 +filter out voxels: 39 +First batch: fn: 0.1493, fp: 0.3511, label 0: tensor(76), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 589 dynamic_size: 10 +filter out voxels: 45 +First batch: fn: 0.1178, fp: 0.3575, label 0: tensor(50), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 593 dynamic_size: 10 +filter out voxels: 53 +First batch: fn: 0.1138, fp: 0.3648, label 0: tensor(90), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 590 dynamic_size: 10 +filter out voxels: 66 +First batch: fn: 0.0912, fp: 0.3850, label 0: tensor(46), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 683 dynamic_size: 10 +filter out voxels: 84 +First batch: fn: 0.0670, fp: 0.4843, label 0: tensor(94), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 584 dynamic_size: 10 +filter out voxels: 67 +First batch: fn: 0.0839, fp: 0.3874, label 0: tensor(72), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:31.122] dice before refine 0.0856672152876854 and after 0.7974904179573059, label 0: tensor(72, device='cuda:0'), label 1: tensor(31, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 5457 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:31.545] dice before refine 0.006312916055321693 and after 0.3888758718967438, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 13031 dynamic_size: 10 +filter out voxels: 3672 +First batch: fn: 0.2402, fp: 2.1477, label 0: tensor(508), label 1: tensor(260) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7829 dynamic_size: 10 +filter out voxels: 211 +First batch: fn: 0.0859, fp: 1.3487, label 0: tensor(510), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5786 dynamic_size: 10 +filter out voxels: 63 +First batch: fn: 0.0539, fp: 1.0064, label 0: tensor(510), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3892 dynamic_size: 10 +filter out voxels: 61 +First batch: fn: 0.0513, fp: 0.6619, label 0: tensor(507), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3099 dynamic_size: 10 +filter out voxels: 58 +First batch: fn: 0.0520, fp: 0.5159, label 0: tensor(508), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2809 dynamic_size: 10 +filter out voxels: 57 +First batch: fn: 0.0487, fp: 0.4660, label 0: tensor(468), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2333 dynamic_size: 10 +filter out voxels: 53 +First batch: fn: 0.0533, fp: 0.3742, label 0: tensor(351), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2407 dynamic_size: 10 +filter out voxels: 49 +First batch: fn: 0.0495, fp: 0.3916, label 0: tensor(433), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2091 dynamic_size: 10 +filter out voxels: 55 +First batch: fn: 0.0581, fp: 0.3251, label 0: tensor(365), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2292 dynamic_size: 10 +filter out voxels: 52 +First batch: fn: 0.0524, fp: 0.3676, label 0: tensor(280), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:38.887] dice before refine 0.4490358233451843 and after 0.8472574949264526, label 0: tensor(280, device='cuda:0'), label 1: tensor(81, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:39.347] dice before refine 0.0 and after 0.3701777160167694, label 0: tensor(0, device='cuda:0'), label 1: tensor(140, device='cuda:0') +num_clicks 10 points_length: 1453 dynamic_size: 10 +filter out voxels: 484 +First batch: fn: 0.6554, fp: 0.5174, label 0: tensor(30), label 1: tensor(152) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4238 dynamic_size: 10 +filter out voxels: 3135 +First batch: fn: 0.2454, fp: 3.1751, label 0: tensor(203), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1493 dynamic_size: 10 +filter out voxels: 833 +First batch: fn: 0.2623, fp: 0.9427, label 0: tensor(128), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 901 dynamic_size: 10 +filter out voxels: 367 +First batch: fn: 0.2324, fp: 0.4948, label 0: tensor(48), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 564 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.1913, fp: 0.2639, label 0: tensor(62), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 594 dynamic_size: 10 +filter out voxels: 51 +First batch: fn: 0.1396, fp: 0.3398, label 0: tensor(134), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 497 dynamic_size: 10 +filter out voxels: 33 +First batch: fn: 0.1429, fp: 0.2583, label 0: tensor(95), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 468 dynamic_size: 10 +filter out voxels: 32 +First batch: fn: 0.1429, fp: 0.2349, label 0: tensor(21), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 541 dynamic_size: 10 +filter out voxels: 57 +First batch: fn: 0.0977, fp: 0.3390, label 0: tensor(100), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 482 dynamic_size: 10 +filter out voxels: 45 +First batch: fn: 0.1106, fp: 0.2785, label 0: tensor(50), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:43.285] dice before refine 0.0038784744683653116 and after 0.8245020508766174, label 0: tensor(50, device='cuda:0'), label 1: tensor(23, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 31898 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:43.769] dice before refine 0.6211885213851929 and after 0.48908016085624695, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 28494 dynamic_size: 10 +filter out voxels: 3201 +First batch: fn: 0.5724, fp: 0.3208, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16499 dynamic_size: 10 +filter out voxels: 434 +First batch: fn: 0.3794, fp: 0.1378, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12559 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.2615, fp: 0.1322, label 0: tensor(493), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11116 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1786, fp: 0.1699, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8377 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0901, fp: 0.1725, label 0: tensor(506), label 1: tensor(394) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7499 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0319, fp: 0.2031, label 0: tensor(509), label 1: tensor(352) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7833 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0115, fp: 0.2340, label 0: tensor(510), label 1: tensor(143) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7931 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0075, fp: 0.2412, label 0: tensor(510), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7390 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0080, fp: 0.2237, label 0: tensor(510), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6919 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0092, fp: 0.2077, label 0: tensor(510), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:53.564] dice before refine 0.8066784143447876 and after 0.9048429727554321, label 0: tensor(510, device='cuda:0'), label 1: tensor(162, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +0.8144636262546886 +[23:13:54.509] epoch: 5/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.8144636262546886 stich left and right side (total size): 1 +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:54.932] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(43, device='cuda:0') +num_clicks 10 points_length: 749 dynamic_size: 10 +filter out voxels: 253 +First batch: fn: 1.0000, fp: 0.5162, label 0: tensor(3), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 542 dynamic_size: 10 +filter out voxels: 193 +First batch: fn: 0.6700, fp: 0.4271, label 0: tensor(16), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 265 dynamic_size: 10 +filter out voxels: 36 +First batch: fn: 0.3543, fp: 0.1822, label 0: tensor(23), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 213 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.2551, fp: 0.1761, label 0: tensor(32), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 193 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.2186, fp: 0.1721, label 0: tensor(42), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 176 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.2085, fp: 0.1478, label 0: tensor(26), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 187 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.1316, fp: 0.2470, label 0: tensor(45), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 171 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.1518, fp: 0.1943, label 0: tensor(42), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 164 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.1478, fp: 0.1842, label 0: tensor(42), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 157 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.1316, fp: 0.1862, label 0: tensor(34), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:58.199] dice before refine 0.0 and after 0.844878077507019, label 0: tensor(34, device='cuda:0'), label 1: tensor(16, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:13:58.562] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(40, device='cuda:0') +num_clicks 10 points_length: 632 dynamic_size: 10 +filter out voxels: 138 +First batch: fn: 1.0000, fp: 0.2794, label 0: tensor(2), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 512 dynamic_size: 10 +filter out voxels: 184 +First batch: fn: 0.6538, fp: 0.3826, label 0: tensor(7), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 409 dynamic_size: 10 +filter out voxels: 195 +First batch: fn: 0.0810, fp: 0.7470, label 0: tensor(74), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 195 dynamic_size: 10 +filter out voxels: 41 +First batch: fn: 0.1478, fp: 0.2470, label 0: tensor(38), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 202 dynamic_size: 10 +filter out voxels: 39 +First batch: fn: 0.1012, fp: 0.3077, label 0: tensor(39), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 200 dynamic_size: 10 +filter out voxels: 39 +First batch: fn: 0.0992, fp: 0.3057, label 0: tensor(46), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 197 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.1093, fp: 0.2895, label 0: tensor(41), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 193 dynamic_size: 10 +filter out voxels: 34 +First batch: fn: 0.1255, fp: 0.2652, label 0: tensor(39), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 191 dynamic_size: 10 +filter out voxels: 34 +First batch: fn: 0.1235, fp: 0.2632, label 0: tensor(47), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 184 dynamic_size: 10 +filter out voxels: 32 +First batch: fn: 0.1255, fp: 0.2470, label 0: tensor(36), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:01.906] dice before refine 0.0 and after 0.8287606239318848, label 0: tensor(36, device='cuda:0'), label 1: tensor(15, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:02.290] dice before refine 0.0 and after 0.04274425283074379, label 0: tensor(0, device='cuda:0'), label 1: tensor(118, device='cuda:0') +num_clicks 10 points_length: 5330 dynamic_size: 10 +filter out voxels: 65 +First batch: fn: 0.8707, fp: 4.9228, label 0: tensor(548), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12675 dynamic_size: 10 +filter out voxels: 11686 +First batch: fn: 0.2913, fp: 13.4859, label 0: tensor(121), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28099 dynamic_size: 10 +filter out voxels: 27664 +First batch: fn: 0.1587, fp: 30.3837, label 0: tensor(97), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34508 dynamic_size: 10 +filter out voxels: 34177 +First batch: fn: 0.1446, fp: 37.3641, label 0: tensor(74), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 36664 dynamic_size: 10 +filter out voxels: 36343 +First batch: fn: 0.1413, fp: 39.7109, label 0: tensor(82), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38353 dynamic_size: 10 +filter out voxels: 38055 +First batch: fn: 0.1337, fp: 41.5543, label 0: tensor(60), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38688 dynamic_size: 10 +filter out voxels: 38390 +First batch: fn: 0.1174, fp: 41.9348, label 0: tensor(57), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38880 dynamic_size: 10 +filter out voxels: 38593 +First batch: fn: 0.1033, fp: 42.1576, label 0: tensor(70), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39083 dynamic_size: 10 +filter out voxels: 38818 +First batch: fn: 0.0935, fp: 42.3880, label 0: tensor(69), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39005 dynamic_size: 10 +filter out voxels: 38750 +First batch: fn: 0.0880, fp: 42.3087, label 0: tensor(99), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:06.804] dice before refine 0.0 and after 0.04159676283597946, label 0: tensor(99, device='cuda:0'), label 1: tensor(28, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:07.180] dice before refine 0.0 and after 0.36961451172828674, label 0: tensor(0, device='cuda:0'), label 1: tensor(139, device='cuda:0') +num_clicks 10 points_length: 1668 dynamic_size: 10 +filter out voxels: 353 +First batch: fn: 0.4685, fp: 1.3446, label 0: tensor(191), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 746 dynamic_size: 10 +filter out voxels: 50 +First batch: fn: 0.1185, fp: 0.6924, label 0: tensor(105), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 756 dynamic_size: 10 +filter out voxels: 59 +First batch: fn: 0.1239, fp: 0.6978, label 0: tensor(221), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 475 dynamic_size: 10 +filter out voxels: 78 +First batch: fn: 0.1293, fp: 0.3870, label 0: tensor(73), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 504 dynamic_size: 10 +filter out voxels: 47 +First batch: fn: 0.1326, fp: 0.4152, label 0: tensor(59), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 532 dynamic_size: 10 +filter out voxels: 44 +First batch: fn: 0.1272, fp: 0.4511, label 0: tensor(76), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 471 dynamic_size: 10 +filter out voxels: 49 +First batch: fn: 0.1196, fp: 0.3924, label 0: tensor(69), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 517 dynamic_size: 10 +filter out voxels: 43 +First batch: fn: 0.0685, fp: 0.4935, label 0: tensor(94), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 429 dynamic_size: 10 +filter out voxels: 52 +First batch: fn: 0.0674, fp: 0.3989, label 0: tensor(109), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 362 dynamic_size: 10 +filter out voxels: 50 +First batch: fn: 0.0652, fp: 0.3283, label 0: tensor(88), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:11.341] dice before refine 0.0 and after 0.823699414730072, label 0: tensor(88, device='cuda:0'), label 1: tensor(27, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 838 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(148) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:11.712] dice before refine 0.0 and after 0.5927342176437378, label 0: tensor(0, device='cuda:0'), label 1: tensor(148, device='cuda:0') +num_clicks 10 points_length: 639 dynamic_size: 10 +filter out voxels: 156 +First batch: fn: 0.4451, fp: 0.3174, label 0: tensor(45), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 324 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.1420, fp: 0.2446, label 0: tensor(57), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 260 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.1181, fp: 0.1921, label 0: tensor(57), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 272 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.1050, fp: 0.2196, label 0: tensor(78), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 230 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.1265, fp: 0.1480, label 0: tensor(51), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 241 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.0990, fp: 0.1885, label 0: tensor(70), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 242 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0967, fp: 0.1921, label 0: tensor(88), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 223 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.0907, fp: 0.1754, label 0: tensor(64), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 216 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.0800, fp: 0.1778, label 0: tensor(66), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 219 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.0776, fp: 0.1838, label 0: tensor(59), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:15.325] dice before refine 0.0 and after 0.8771929740905762, label 0: tensor(59, device='cuda:0'), label 1: tensor(24, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 901 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:15.704] dice before refine 0.0 and after 0.4486458897590637, label 0: tensor(0, device='cuda:0'), label 1: tensor(159, device='cuda:0') +num_clicks 10 points_length: 1079 dynamic_size: 10 +filter out voxels: 557 +First batch: fn: 0.5128, fp: 0.6848, label 0: tensor(38), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 679 dynamic_size: 10 +filter out voxels: 328 +First batch: fn: 0.1165, fp: 0.6371, label 0: tensor(74), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 502 dynamic_size: 10 +filter out voxels: 154 +First batch: fn: 0.1365, fp: 0.4206, label 0: tensor(66), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 560 dynamic_size: 10 +filter out voxels: 141 +First batch: fn: 0.0622, fp: 0.5594, label 0: tensor(108), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 471 dynamic_size: 10 +filter out voxels: 169 +First batch: fn: 0.0832, fp: 0.4395, label 0: tensor(91), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 396 dynamic_size: 10 +filter out voxels: 121 +First batch: fn: 0.0910, fp: 0.3485, label 0: tensor(95), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 367 dynamic_size: 10 +filter out voxels: 111 +First batch: fn: 0.1065, fp: 0.3008, label 0: tensor(67), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 357 dynamic_size: 10 +filter out voxels: 105 +First batch: fn: 0.0866, fp: 0.3097, label 0: tensor(77), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 353 dynamic_size: 10 +filter out voxels: 98 +First batch: fn: 0.0799, fp: 0.3119, label 0: tensor(81), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 335 dynamic_size: 10 +filter out voxels: 88 +First batch: fn: 0.0788, fp: 0.2930, label 0: tensor(71), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:19.553] dice before refine 0.0 and after 0.8338368535041809, label 0: tensor(71, device='cuda:0'), label 1: tensor(30, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1964 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:19.927] dice before refine 0.0003779146645683795 and after 0.005326002836227417, label 0: tensor(0, device='cuda:0'), label 1: tensor(123, device='cuda:0') +num_clicks 10 points_length: 11579 dynamic_size: 10 +filter out voxels: 6473 +First batch: fn: 0.9842, fp: 4.9114, label 0: tensor(389), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8634 dynamic_size: 10 +filter out voxels: 3816 +First batch: fn: 0.4888, fp: 3.9073, label 0: tensor(368), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9110 dynamic_size: 10 +filter out voxels: 3529 +First batch: fn: 0.1029, fp: 4.5356, label 0: tensor(315), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7475 dynamic_size: 10 +filter out voxels: 3040 +First batch: fn: 0.0438, fp: 3.7622, label 0: tensor(363), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7004 dynamic_size: 10 +filter out voxels: 2549 +First batch: fn: 0.0224, fp: 3.5438, label 0: tensor(408), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6121 dynamic_size: 10 +filter out voxels: 2196 +First batch: fn: 0.0158, fp: 3.1008, label 0: tensor(442), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4940 dynamic_size: 10 +filter out voxels: 1810 +First batch: fn: 0.0244, fp: 2.4908, label 0: tensor(378), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3638 dynamic_size: 10 +filter out voxels: 1136 +First batch: fn: 0.0372, fp: 1.8152, label 0: tensor(314), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1645 dynamic_size: 10 +filter out voxels: 42 +First batch: fn: 0.0407, fp: 0.7968, label 0: tensor(203), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1663 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.0290, fp: 0.8177, label 0: tensor(275), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:25.718] dice before refine 0.03779486566781998 and after 0.7444335222244263, label 0: tensor(275, device='cuda:0'), label 1: tensor(39, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2027 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:26.096] dice before refine 0.0 and after 0.04878048598766327, label 0: tensor(0, device='cuda:0'), label 1: tensor(117, device='cuda:0') +num_clicks 10 points_length: 2925 dynamic_size: 10 +filter out voxels: 936 +First batch: fn: 0.9630, fp: 0.4800, label 0: tensor(21), label 1: tensor(177) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1890 dynamic_size: 10 +filter out voxels: 504 +First batch: fn: 0.4509, fp: 0.4815, label 0: tensor(85), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2665 dynamic_size: 10 +filter out voxels: 87 +First batch: fn: 0.1347, fp: 1.1801, label 0: tensor(252), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1409 dynamic_size: 10 +filter out voxels: 50 +First batch: fn: 0.0923, fp: 0.6029, label 0: tensor(194), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1199 dynamic_size: 10 +filter out voxels: 34 +First batch: fn: 0.0715, fp: 0.5200, label 0: tensor(212), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1059 dynamic_size: 10 +filter out voxels: 63 +First batch: fn: 0.0730, fp: 0.4494, label 0: tensor(170), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1156 dynamic_size: 10 +filter out voxels: 34 +First batch: fn: 0.0666, fp: 0.5037, label 0: tensor(172), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 720 dynamic_size: 10 +filter out voxels: 63 +First batch: fn: 0.0839, fp: 0.2713, label 0: tensor(113), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 804 dynamic_size: 10 +filter out voxels: 33 +First batch: fn: 0.0898, fp: 0.3069, label 0: tensor(93), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 891 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.0696, fp: 0.3700, label 0: tensor(99), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:30.545] dice before refine 0.009852216579020023 and after 0.8135955333709717, label 0: tensor(99, device='cuda:0'), label 1: tensor(50, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.08842315982011231 +[23:14:31.226] epoch: 5/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.08842315982011231 stich left and right side (total size): 1 +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:31.715] dice before refine 0.01623014733195305 and after 0.5345309376716614, label 0: tensor(0, device='cuda:0'), label 1: tensor(542, device='cuda:0') +num_clicks 10 points_length: 8499 dynamic_size: 10 +filter out voxels: 3122 +First batch: fn: 0.3313, fp: 0.8332, label 0: tensor(365), label 1: tensor(347) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8885 dynamic_size: 10 +filter out voxels: 2375 +First batch: fn: 0.1944, fp: 1.0230, label 0: tensor(507), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7422 dynamic_size: 10 +filter out voxels: 1511 +First batch: fn: 0.1585, fp: 0.8585, label 0: tensor(508), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6940 dynamic_size: 10 +filter out voxels: 1046 +First batch: fn: 0.1102, fp: 0.8408, label 0: tensor(510), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6553 dynamic_size: 10 +filter out voxels: 622 +First batch: fn: 0.0837, fp: 0.8142, label 0: tensor(510), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5711 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.0752, fp: 0.7073, label 0: tensor(489), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5427 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.0814, fp: 0.6622, label 0: tensor(537), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5069 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0792, fp: 0.6154, label 0: tensor(487), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5113 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.0752, fp: 0.6254, label 0: tensor(499), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4877 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0734, fp: 0.5948, label 0: tensor(455), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:39.381] dice before refine 0.3981047570705414 and after 0.7462735772132874, label 0: tensor(455, device='cuda:0'), label 1: tensor(90, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:39.807] dice before refine 0.04942942410707474 and after 0.47088518738746643, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 9014 dynamic_size: 10 +filter out voxels: 1881 +First batch: fn: 0.4504, fp: 0.7847, label 0: tensor(386), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9391 dynamic_size: 10 +filter out voxels: 2064 +First batch: fn: 0.1306, fp: 1.1562, label 0: tensor(510), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6516 dynamic_size: 10 +filter out voxels: 437 +First batch: fn: 0.1220, fp: 0.7709, label 0: tensor(510), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5555 dynamic_size: 10 +filter out voxels: 87 +First batch: fn: 0.0981, fp: 0.6631, label 0: tensor(506), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5064 dynamic_size: 10 +filter out voxels: 71 +First batch: fn: 0.0730, fp: 0.6209, label 0: tensor(508), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4538 dynamic_size: 10 +filter out voxels: 66 +First batch: fn: 0.0576, fp: 0.5643, label 0: tensor(370), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4217 dynamic_size: 10 +filter out voxels: 63 +First batch: fn: 0.0426, fp: 0.5352, label 0: tensor(509), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3295 dynamic_size: 10 +filter out voxels: 66 +First batch: fn: 0.0437, fp: 0.4078, label 0: tensor(420), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3434 dynamic_size: 10 +filter out voxels: 57 +First batch: fn: 0.0478, fp: 0.4227, label 0: tensor(445), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3100 dynamic_size: 10 +filter out voxels: 56 +First batch: fn: 0.0385, fp: 0.3863, label 0: tensor(479), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:47.497] dice before refine 0.44549813866615295 and after 0.8253519535064697, label 0: tensor(479, device='cuda:0'), label 1: tensor(88, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(404) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:47.920] dice before refine 0.005572931375354528 and after 0.5119848251342773, label 0: tensor(0, device='cuda:0'), label 1: tensor(404, device='cuda:0') +num_clicks 10 points_length: 5660 dynamic_size: 10 +filter out voxels: 1263 +First batch: fn: 0.5812, fp: 0.2171, label 0: tensor(108), label 1: tensor(487) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4506 dynamic_size: 10 +filter out voxels: 808 +First batch: fn: 0.2145, fp: 0.4210, label 0: tensor(420), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3376 dynamic_size: 10 +filter out voxels: 81 +First batch: fn: 0.1970, fp: 0.2791, label 0: tensor(280), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3179 dynamic_size: 10 +filter out voxels: 74 +First batch: fn: 0.1630, fp: 0.2853, label 0: tensor(334), label 1: tensor(175) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2764 dynamic_size: 10 +filter out voxels: 79 +First batch: fn: 0.1221, fp: 0.2677, label 0: tensor(237), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2744 dynamic_size: 10 +filter out voxels: 78 +First batch: fn: 0.0924, fp: 0.2946, label 0: tensor(361), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2481 dynamic_size: 10 +filter out voxels: 92 +First batch: fn: 0.0848, fp: 0.2652, label 0: tensor(332), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2397 dynamic_size: 10 +filter out voxels: 92 +First batch: fn: 0.0824, fp: 0.2557, label 0: tensor(349), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2244 dynamic_size: 10 +filter out voxels: 90 +First batch: fn: 0.0777, fp: 0.2388, label 0: tensor(328), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2161 dynamic_size: 10 +filter out voxels: 94 +First batch: fn: 0.0736, fp: 0.2312, label 0: tensor(364), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:54.607] dice before refine 0.47651809453964233 and after 0.8643388152122498, label 0: tensor(364, device='cuda:0'), label 1: tensor(110, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(340) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:14:55.031] dice before refine 0.007570198271423578 and after 0.5254745483398438, label 0: tensor(0, device='cuda:0'), label 1: tensor(340, device='cuda:0') +num_clicks 10 points_length: 6175 dynamic_size: 10 +filter out voxels: 1116 +First batch: fn: 0.5178, fp: 0.3532, label 0: tensor(294), label 1: tensor(466) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4308 dynamic_size: 10 +filter out voxels: 538 +First batch: fn: 0.1742, fp: 0.4334, label 0: tensor(390), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3839 dynamic_size: 10 +filter out voxels: 60 +First batch: fn: 0.1444, fp: 0.3970, label 0: tensor(425), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3374 dynamic_size: 10 +filter out voxels: 80 +First batch: fn: 0.0925, fp: 0.3834, label 0: tensor(537), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2614 dynamic_size: 10 +filter out voxels: 101 +First batch: fn: 0.0852, fp: 0.2835, label 0: tensor(339), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2437 dynamic_size: 10 +filter out voxels: 93 +First batch: fn: 0.0829, fp: 0.2608, label 0: tensor(384), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2243 dynamic_size: 10 +filter out voxels: 109 +First batch: fn: 0.0876, fp: 0.2288, label 0: tensor(330), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2169 dynamic_size: 10 +filter out voxels: 93 +First batch: fn: 0.0803, fp: 0.2257, label 0: tensor(276), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2175 dynamic_size: 10 +filter out voxels: 91 +First batch: fn: 0.0700, fp: 0.2368, label 0: tensor(382), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1994 dynamic_size: 10 +filter out voxels: 96 +First batch: fn: 0.0694, fp: 0.2118, label 0: tensor(326), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:02.054] dice before refine 0.42888107895851135 and after 0.8716623783111572, label 0: tensor(326, device='cuda:0'), label 1: tensor(96, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 36954 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:02.617] dice before refine 0.5613867044448853 and after 0.4133002758026123, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 28408 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7292, fp: 0.0395, label 0: tensor(322), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26398 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6150, fp: 0.0993, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21642 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4746, fp: 0.1110, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17340 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3369, fp: 0.1324, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16730 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2707, fp: 0.1820, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16405 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1872, fp: 0.2568, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15865 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.1287, fp: 0.3006, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15142 dynamic_size: 10 +filter out voxels: 20 +First batch: fn: 0.0798, fp: 0.3300, label 0: tensor(508), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13991 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.0410, fp: 0.3376, label 0: tensor(509), label 1: tensor(379) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13021 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.0276, fp: 0.3247, label 0: tensor(510), label 1: tensor(314) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:13.600] dice before refine 0.6643506288528442 and after 0.8499692678451538, label 0: tensor(510, device='cuda:0'), label 1: tensor(314, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 35104 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:14.132] dice before refine 0.49194613099098206 and after 0.39112600684165955, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 29092 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7338, fp: 0.0949, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28227 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6059, fp: 0.1982, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25748 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4776, fp: 0.2558, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25106 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.3959, fp: 0.3193, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25010 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.3259, fp: 0.3865, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22184 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.2288, fp: 0.4031, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18846 dynamic_size: 10 +filter out voxels: 36 +First batch: fn: 0.1488, fp: 0.3880, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16427 dynamic_size: 10 +filter out voxels: 41 +First batch: fn: 0.0791, fp: 0.3889, label 0: tensor(509), label 1: tensor(444) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15006 dynamic_size: 10 +filter out voxels: 39 +First batch: fn: 0.0457, fp: 0.3817, label 0: tensor(510), label 1: tensor(372) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13895 dynamic_size: 10 +filter out voxels: 45 +First batch: fn: 0.0252, fp: 0.3707, label 0: tensor(510), label 1: tensor(268) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:25.215] dice before refine 0.6730049252510071 and after 0.8391973972320557, label 0: tensor(510, device='cuda:0'), label 1: tensor(268, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26886 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:25.737] dice before refine 0.2754332721233368 and after 0.2807283401489258, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 30377 dynamic_size: 10 +filter out voxels: 115 +First batch: fn: 0.7795, fp: 0.3503, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27445 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5703, fp: 0.4505, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28095 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4944, fp: 0.5505, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27491 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4087, fp: 0.6138, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24935 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2834, fp: 0.6441, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23755 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1715, fp: 0.7121, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24694 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0924, fp: 0.8261, label 0: tensor(509), label 1: tensor(477) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25070 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0400, fp: 0.8925, label 0: tensor(510), label 1: tensor(261) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22593 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0351, fp: 0.8052, label 0: tensor(508), label 1: tensor(241) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22292 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0269, fp: 0.8023, label 0: tensor(510), label 1: tensor(169) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:36.793] dice before refine 0.5463424324989319 and after 0.7158757448196411, label 0: tensor(510, device='cuda:0'), label 1: tensor(169, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:37.316] dice before refine 0.21851873397827148 and after 0.29584866762161255, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 26800 dynamic_size: 10 +filter out voxels: 149 +First batch: fn: 0.7855, fp: 0.2353, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20106 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.6401, fp: 0.1258, label 0: tensor(345), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14745 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4516, fp: 0.1101, label 0: tensor(439), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12436 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3130, fp: 0.1607, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11830 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2065, fp: 0.2442, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11838 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1396, fp: 0.3113, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11322 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0713, fp: 0.3600, label 0: tensor(510), label 1: tensor(362) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11034 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0433, fp: 0.3770, label 0: tensor(509), label 1: tensor(241) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10420 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0385, fp: 0.3584, label 0: tensor(510), label 1: tensor(241) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10199 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0334, fp: 0.3551, label 0: tensor(510), label 1: tensor(190) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:47.770] dice before refine 0.6691932678222656 and after 0.841548502445221, label 0: tensor(510, device='cuda:0'), label 1: tensor(190, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.6981083615259691 +[23:15:48.348] epoch: 5/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.6981083615259691 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:48.857] dice before refine 0.6736818552017212 and after 0.7096238732337952, label 0: tensor(0, device='cuda:0'), label 1: tensor(150, device='cuda:0') +num_clicks 10 points_length: 2100 dynamic_size: 10 +filter out voxels: 1161 +First batch: fn: 0.1818, fp: 0.4879, label 0: tensor(118), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 955 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0494, fp: 0.2551, label 0: tensor(174), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 760 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0421, fp: 0.2003, label 0: tensor(163), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 759 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0297, fp: 0.2124, label 0: tensor(133), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 739 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0226, fp: 0.2130, label 0: tensor(202), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 655 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0379, fp: 0.1709, label 0: tensor(169), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 663 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0325, fp: 0.1789, label 0: tensor(207), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 634 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0341, fp: 0.1680, label 0: tensor(118), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 652 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0325, fp: 0.1754, label 0: tensor(123), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 630 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0338, fp: 0.1671, label 0: tensor(110), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:53.336] dice before refine 0.821198046207428 and after 0.9071546196937561, label 0: tensor(110, device='cuda:0'), label 1: tensor(47, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:53.729] dice before refine 0.8038946986198425 and after 0.8240556716918945, label 0: tensor(0, device='cuda:0'), label 1: tensor(129, device='cuda:0') +num_clicks 10 points_length: 1062 dynamic_size: 10 +filter out voxels: 43 +First batch: fn: 0.2070, fp: 0.1317, label 0: tensor(92), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1234 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0287, fp: 0.3648, label 0: tensor(292), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 738 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0408, fp: 0.1945, label 0: tensor(142), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 857 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0153, fp: 0.2580, label 0: tensor(202), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 692 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0316, fp: 0.1891, label 0: tensor(118), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 777 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0210, fp: 0.2267, label 0: tensor(173), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 652 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0344, fp: 0.1735, label 0: tensor(114), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 722 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0265, fp: 0.2038, label 0: tensor(187), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 660 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0364, fp: 0.1741, label 0: tensor(136), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 673 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0303, fp: 0.1843, label 0: tensor(125), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:58.248] dice before refine 0.7808570861816406 and after 0.898876428604126, label 0: tensor(125, device='cuda:0'), label 1: tensor(48, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:15:58.630] dice before refine 0.5379094481468201 and after 0.5280132293701172, label 0: tensor(0, device='cuda:0'), label 1: tensor(159, device='cuda:0') +num_clicks 10 points_length: 4566 dynamic_size: 10 +filter out voxels: 3687 +First batch: fn: 0.1856, fp: 1.2704, label 0: tensor(93), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3190 dynamic_size: 10 +filter out voxels: 2058 +First batch: fn: 0.0233, fp: 0.9939, label 0: tensor(215), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 852 dynamic_size: 10 +filter out voxels: 74 +First batch: fn: 0.0322, fp: 0.2395, label 0: tensor(146), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 854 dynamic_size: 10 +filter out voxels: 37 +First batch: fn: 0.0198, fp: 0.2526, label 0: tensor(178), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 739 dynamic_size: 10 +filter out voxels: 35 +First batch: fn: 0.0354, fp: 0.2003, label 0: tensor(108), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 754 dynamic_size: 10 +filter out voxels: 29 +First batch: fn: 0.0306, fp: 0.2098, label 0: tensor(135), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 714 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.0303, fp: 0.1974, label 0: tensor(133), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 768 dynamic_size: 10 +filter out voxels: 34 +First batch: fn: 0.0223, fp: 0.2226, label 0: tensor(178), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 655 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.0335, fp: 0.1754, label 0: tensor(134), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 718 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.0265, fp: 0.2025, label 0: tensor(154), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:03.033] dice before refine 0.7912145853042603 and after 0.9032065868377686, label 0: tensor(154, device='cuda:0'), label 1: tensor(49, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(176) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:03.420] dice before refine 0.8060008883476257 and after 0.738231897354126, label 0: tensor(0, device='cuda:0'), label 1: tensor(176, device='cuda:0') +num_clicks 10 points_length: 1824 dynamic_size: 10 +filter out voxels: 854 +First batch: fn: 0.1798, fp: 0.4018, label 0: tensor(156), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1075 dynamic_size: 10 +filter out voxels: 155 +First batch: fn: 0.0402, fp: 0.3026, label 0: tensor(169), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 837 dynamic_size: 10 +filter out voxels: 92 +First batch: fn: 0.0341, fp: 0.2328, label 0: tensor(185), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 829 dynamic_size: 10 +filter out voxels: 73 +First batch: fn: 0.0274, fp: 0.2369, label 0: tensor(176), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 753 dynamic_size: 10 +filter out voxels: 74 +First batch: fn: 0.0271, fp: 0.2130, label 0: tensor(116), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 785 dynamic_size: 10 +filter out voxels: 71 +First batch: fn: 0.0230, fp: 0.2274, label 0: tensor(187), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 725 dynamic_size: 10 +filter out voxels: 76 +First batch: fn: 0.0293, fp: 0.2018, label 0: tensor(116), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 784 dynamic_size: 10 +filter out voxels: 70 +First batch: fn: 0.0226, fp: 0.2274, label 0: tensor(192), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 699 dynamic_size: 10 +filter out voxels: 73 +First batch: fn: 0.0354, fp: 0.1875, label 0: tensor(153), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 693 dynamic_size: 10 +filter out voxels: 60 +First batch: fn: 0.0316, fp: 0.1894, label 0: tensor(114), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:07.894] dice before refine 0.7719529867172241 and after 0.8910630941390991, label 0: tensor(114, device='cuda:0'), label 1: tensor(59, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.8666615648703142 +[23:16:08.324] epoch: 5/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.8666615648703142 stich left and right side (total size): 1 +num_clicks 10 points_length: 19676 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:08.857] dice before refine 0.0 and after 0.232162207365036, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 19844 dynamic_size: 10 +filter out voxels: 2842 +First batch: fn: 0.8475, fp: 0.1610, label 0: tensor(120), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11898 dynamic_size: 10 +filter out voxels: 1167 +First batch: fn: 0.4447, fp: 0.1600, label 0: tensor(451), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10187 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3078, fp: 0.2099, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9444 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1901, fp: 0.2899, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8507 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1153, fp: 0.3170, label 0: tensor(505), label 1: tensor(308) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7849 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.0919, fp: 0.3070, label 0: tensor(506), label 1: tensor(371) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7440 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0660, fp: 0.3121, label 0: tensor(510), label 1: tensor(237) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6777 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.0578, fp: 0.2866, label 0: tensor(509), label 1: tensor(204) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6238 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.0539, fp: 0.2631, label 0: tensor(508), label 1: tensor(178) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5935 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.0477, fp: 0.2539, label 0: tensor(508), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:18.140] dice before refine 0.538459300994873 and after 0.8746965527534485, label 0: tensor(508, device='cuda:0'), label 1: tensor(129, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 30548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:18.643] dice before refine 0.0 and after 0.12525242567062378, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 33355 dynamic_size: 10 +filter out voxels: 4256 +First batch: fn: 0.9218, fp: 0.1701, label 0: tensor(213), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28952 dynamic_size: 10 +filter out voxels: 4441 +First batch: fn: 0.7440, fp: 0.2037, label 0: tensor(338), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22942 dynamic_size: 10 +filter out voxels: 5529 +First batch: fn: 0.4953, fp: 0.2557, label 0: tensor(421), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18382 dynamic_size: 10 +filter out voxels: 5224 +First batch: fn: 0.3105, fp: 0.2912, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15171 dynamic_size: 10 +filter out voxels: 4159 +First batch: fn: 0.1838, fp: 0.3129, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13524 dynamic_size: 10 +filter out voxels: 4001 +First batch: fn: 0.1240, fp: 0.3187, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12545 dynamic_size: 10 +filter out voxels: 3945 +First batch: fn: 0.0737, fp: 0.3370, label 0: tensor(509), label 1: tensor(387) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10597 dynamic_size: 10 +filter out voxels: 3082 +First batch: fn: 0.0594, fp: 0.2875, label 0: tensor(507), label 1: tensor(293) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7789 dynamic_size: 10 +filter out voxels: 964 +First batch: fn: 0.0529, fp: 0.2020, label 0: tensor(506), label 1: tensor(276) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7294 dynamic_size: 10 +filter out voxels: 54 +First batch: fn: 0.0423, fp: 0.1964, label 0: tensor(510), label 1: tensor(229) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:28.758] dice before refine 0.6115233898162842 and after 0.892443835735321, label 0: tensor(510, device='cuda:0'), label 1: tensor(229, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 23425 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:29.220] dice before refine 0.5311179161071777 and after 0.5896535515785217, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 14841 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.5448, fp: 0.0888, label 0: tensor(355), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9358 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2149, fp: 0.1846, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7185 dynamic_size: 10 +filter out voxels: 94 +First batch: fn: 0.0841, fp: 0.2227, label 0: tensor(508), label 1: tensor(356) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6226 dynamic_size: 10 +filter out voxels: 111 +First batch: fn: 0.0381, fp: 0.2277, label 0: tensor(509), label 1: tensor(224) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5815 dynamic_size: 10 +filter out voxels: 98 +First batch: fn: 0.0273, fp: 0.2210, label 0: tensor(509), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5255 dynamic_size: 10 +filter out voxels: 99 +First batch: fn: 0.0227, fp: 0.2016, label 0: tensor(509), label 1: tensor(157) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4942 dynamic_size: 10 +filter out voxels: 92 +First batch: fn: 0.0153, fp: 0.1956, label 0: tensor(509), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4576 dynamic_size: 10 +filter out voxels: 96 +First batch: fn: 0.0165, fp: 0.1789, label 0: tensor(509), label 1: tensor(140) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4443 dynamic_size: 10 +filter out voxels: 99 +First batch: fn: 0.0149, fp: 0.1748, label 0: tensor(538), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4216 dynamic_size: 10 +filter out voxels: 92 +First batch: fn: 0.0143, fp: 0.1656, label 0: tensor(510), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:37.756] dice before refine 0.7874723076820374 and after 0.9194692373275757, label 0: tensor(510, device='cuda:0'), label 1: tensor(122, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25823 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:38.233] dice before refine 0.6452817320823669 and after 0.6745743751525879, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 13992 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.4384, fp: 0.1034, label 0: tensor(532), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8426 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1716, fp: 0.1547, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8467 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0652, fp: 0.2627, label 0: tensor(510), label 1: tensor(382) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7935 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0186, fp: 0.2887, label 0: tensor(510), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6906 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0170, fp: 0.2504, label 0: tensor(510), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6808 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0094, fp: 0.2542, label 0: tensor(510), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6150 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0132, fp: 0.2249, label 0: tensor(510), label 1: tensor(168) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6291 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0093, fp: 0.2343, label 0: tensor(510), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5637 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0127, fp: 0.2056, label 0: tensor(510), label 1: tensor(120) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5516 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0117, fp: 0.2019, label 0: tensor(510), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:47.152] dice before refine 0.7817838788032532 and after 0.9085165858268738, label 0: tensor(510, device='cuda:0'), label 1: tensor(96, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 69252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:47.732] dice before refine 0.5402132868766785 and after 0.48014625906944275, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 48336 dynamic_size: 10 +filter out voxels: 20 +First batch: fn: 0.6777, fp: 0.0203, label 0: tensor(257), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39354 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5376, fp: 0.0307, label 0: tensor(476), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35826 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4900, fp: 0.0273, label 0: tensor(486), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32401 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4322, fp: 0.0357, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29990 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3867, fp: 0.0464, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26841 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3386, fp: 0.0490, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24628 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2965, fp: 0.0591, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22008 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2531, fp: 0.0647, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19879 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2191, fp: 0.0680, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17704 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1793, fp: 0.0763, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:58.676] dice before refine 0.763927161693573 and after 0.8780884146690369, label 0: tensor(502, device='cuda:0'), label 1: tensor(508, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 92139 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:16:59.288] dice before refine 0.541120171546936 and after 0.4507501721382141, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 66005 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7061, fp: 0.0103, label 0: tensor(286), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 54036 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5727, fp: 0.0137, label 0: tensor(364), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48800 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5209, fp: 0.0088, label 0: tensor(314), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44263 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4669, fp: 0.0135, label 0: tensor(451), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 41907 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4333, fp: 0.0215, label 0: tensor(531), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 38627 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4010, fp: 0.0183, label 0: tensor(429), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35764 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3574, fp: 0.0307, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31994 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3144, fp: 0.0328, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29392 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2803, fp: 0.0387, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24084 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2213, fp: 0.0401, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:17:10.332] dice before refine 0.7570347785949707 and after 0.8652467131614685, label 0: tensor(503, device='cuda:0'), label 1: tensor(507, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 10350 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:17:10.778] dice before refine 0.18886753916740417 and after 0.29307833313941956, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 18925 dynamic_size: 10 +filter out voxels: 6242 +First batch: fn: 0.6210, fp: 1.2075, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15402 dynamic_size: 10 +filter out voxels: 2036 +First batch: fn: 0.2752, fp: 1.2129, label 0: tensor(508), label 1: tensor(447) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17665 dynamic_size: 10 +filter out voxels: 2611 +First batch: fn: 0.0891, fp: 1.6177, label 0: tensor(510), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17224 dynamic_size: 10 +filter out voxels: 2112 +First batch: fn: 0.0621, fp: 1.6020, label 0: tensor(510), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16327 dynamic_size: 10 +filter out voxels: 1811 +First batch: fn: 0.0570, fp: 1.5205, label 0: tensor(509), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15967 dynamic_size: 10 +filter out voxels: 1612 +First batch: fn: 0.0450, fp: 1.4977, label 0: tensor(510), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15487 dynamic_size: 10 +filter out voxels: 1457 +First batch: fn: 0.0409, fp: 1.4555, label 0: tensor(510), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14751 dynamic_size: 10 +filter out voxels: 1248 +First batch: fn: 0.0391, fp: 1.3861, label 0: tensor(510), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14515 dynamic_size: 10 +filter out voxels: 1133 +First batch: fn: 0.0374, fp: 1.3650, label 0: tensor(509), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14343 dynamic_size: 10 +filter out voxels: 1100 +First batch: fn: 0.0386, fp: 1.3471, label 0: tensor(510), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:17:19.417] dice before refine 0.39314839243888855 and after 0.5833039879798889, label 0: tensor(510, device='cuda:0'), label 1: tensor(110, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 9566 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:17:19.846] dice before refine 0.1832834780216217 and after 0.3821084797382355, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 10333 dynamic_size: 10 +filter out voxels: 2950 +First batch: fn: 0.6660, fp: 0.4142, label 0: tensor(257), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5132 dynamic_size: 10 +filter out voxels: 584 +First batch: fn: 0.2122, fp: 0.3243, label 0: tensor(407), label 1: tensor(260) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4466 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.1093, fp: 0.3575, label 0: tensor(506), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3843 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0768, fp: 0.3249, label 0: tensor(507), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3310 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0674, fp: 0.2786, label 0: tensor(481), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3065 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0576, fp: 0.2628, label 0: tensor(476), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2837 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0557, fp: 0.2409, label 0: tensor(507), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2624 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.0491, fp: 0.2252, label 0: tensor(392), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2556 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0436, fp: 0.2236, label 0: tensor(385), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2534 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.0418, fp: 0.2231, label 0: tensor(516), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:17:27.372] dice before refine 0.6499282717704773 and after 0.884669303894043, label 0: tensor(516, device='cuda:0'), label 1: tensor(96, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.7472195273095911 +[23:17:27.859] epoch: 5/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.7472195273095911 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:17:28.378] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(20, device='cuda:0') +num_clicks 10 points_length: 7028 dynamic_size: 10 +filter out voxels: 6900 +First batch: fn: 1.0000, fp: 53.9062, label 0: tensor(10), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8084 dynamic_size: 10 +filter out voxels: 7956 +First batch: fn: 1.0000, fp: 62.1562, label 0: tensor(10), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8413 dynamic_size: 10 +filter out voxels: 8285 +First batch: fn: 1.0000, fp: 64.7266, label 0: tensor(10), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15965 dynamic_size: 10 +filter out voxels: 15860 +First batch: fn: 0.8203, fp: 123.9062, label 0: tensor(10), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22470 dynamic_size: 10 +filter out voxels: 22370 +First batch: fn: 0.7578, fp: 174.7891, label 0: tensor(13), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24887 dynamic_size: 10 +filter out voxels: 24752 +First batch: fn: 0.5312, fp: 193.8984, label 0: tensor(21), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20289 dynamic_size: 10 +filter out voxels: 20174 +First batch: fn: 0.6016, fp: 157.9062, label 0: tensor(23), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23286 dynamic_size: 10 +filter out voxels: 23158 +First batch: fn: 0.5469, fp: 181.3750, label 0: tensor(20), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19652 dynamic_size: 10 +filter out voxels: 19536 +First batch: fn: 0.5859, fp: 152.9453, label 0: tensor(15), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22400 dynamic_size: 10 +filter out voxels: 22263 +First batch: fn: 0.5156, fp: 174.4844, label 0: tensor(19), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:17:31.373] dice before refine 0.0 and after 0.006611062213778496, label 0: tensor(19, device='cuda:0'), label 1: tensor(42, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:17:31.722] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(23, device='cuda:0') +num_clicks 10 points_length: 2823 dynamic_size: 10 +filter out voxels: 2694 +First batch: fn: 1.0000, fp: 21.0547, label 0: tensor(11), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 947 dynamic_size: 10 +filter out voxels: 819 +First batch: fn: 1.0000, fp: 6.3984, label 0: tensor(7), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 140 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.6250, fp: 0.4688, label 0: tensor(15), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 182 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3906, fp: 1.0312, label 0: tensor(33), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 240 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.3438, fp: 1.5312, label 0: tensor(40), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 183 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.3750, fp: 1.0547, label 0: tensor(23), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 108 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.5234, fp: 0.3203, label 0: tensor(15), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 104 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.5703, fp: 0.2422, label 0: tensor(13), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 145 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3750, fp: 0.7578, label 0: tensor(15), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 155 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3047, fp: 0.9062, label 0: tensor(43), label 1: tensor(5) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:17:34.728] dice before refine 0.0 and after 0.519298255443573, label 0: tensor(43, device='cuda:0'), label 1: tensor(5, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.3972210477698933 +[23:17:35.241] epoch: 5/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.3972210477698933 stich left and right side (total size): 1 +[23:17:35.241] - Val metrics mean dice: 0.5168213063989543 +Checkpoint Directory exists! +[23:17:35.833] - Val metrics best mean dice: 0.5652097064909364 at epoch 4 +num_clicks 50 points_length: 86527 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34433886408805847 and after 0.2334602326154709 +num_clicks 50 points_length: 65418 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.9639, fp: 0.0055, label 0: tensor(65), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44333797693252563 and after 0.37300124764442444 +num_clicks 50 points_length: 55808 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 10 +First batch: fn: 0.8786, fp: 0.0043, label 0: tensor(167), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5190040469169617 and after 0.4908757209777832 +num_clicks 50 points_length: 50492 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7578, fp: 0.0121, label 0: tensor(227), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5467584133148193 and after 0.5491737127304077 +num_clicks 50 points_length: 48060 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6874, fp: 0.0148, label 0: tensor(306), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5541515350341797 and after 0.5774694681167603 +num_clicks 50 points_length: 46378 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6568, fp: 0.0121, label 0: tensor(418), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5521435141563416 and after 0.6121964454650879 +num_clicks 50 points_length: 42863 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6250, fp: 0.0132, label 0: tensor(342), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5626671314239502 and after 0.6545518636703491 +num_clicks 50 points_length: 37897 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5879, fp: 0.0150, label 0: tensor(392), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5671648979187012 and after 0.6883267164230347 +num_clicks 50 points_length: 35387 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5441, fp: 0.0174, label 0: tensor(503), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5696144700050354 and after 0.7105194330215454 +num_clicks 50 points_length: 31284 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5330, fp: 0.0156, label 0: tensor(423), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5815486311912537 and after 0.7232051491737366 +num_clicks 50 points_length: 30138 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5185, fp: 0.0165, label 0: tensor(500), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5761972665786743 and after 0.7395769357681274 +epoch: 6/20, iter: 0/42: loss:2.5203: rank:-1 +[23:18:05.595] epoch: 6/20, iter: 0/42: loss:2.5203: rank:-1 +num_clicks 50 points_length: 35276 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41665223240852356 and after 0.47929829359054565 +num_clicks 50 points_length: 10800 dynamic_size: 11 +filter out voxels: 1526 +filter out voxels: 124 +First batch: fn: 0.9070, fp: 0.4276, label 0: tensor(488), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45418936014175415 and after 0.5510982275009155 +num_clicks 50 points_length: 9137 dynamic_size: 32 +filter out voxels: 1907 +filter out voxels: 48 +First batch: fn: 0.8112, fp: 0.4229, label 0: tensor(513), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5051500797271729 and after 0.5905104875564575 +num_clicks 50 points_length: 8142 dynamic_size: 47 +filter out voxels: 1659 +filter out voxels: 72 +First batch: fn: 0.7551, fp: 0.4201, label 0: tensor(520), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5053005814552307 and after 0.6666980981826782 +num_clicks 50 points_length: 7095 dynamic_size: 7 +filter out voxels: 1515 +filter out voxels: 190 +First batch: fn: 0.6162, fp: 0.4111, label 0: tensor(338), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5705570578575134 and after 0.7225021123886108 +num_clicks 50 points_length: 6856 dynamic_size: 20 +filter out voxels: 1402 +filter out voxels: 196 +First batch: fn: 0.4932, fp: 0.3873, label 0: tensor(224), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6023283004760742 and after 0.7573832273483276 +num_clicks 50 points_length: 6513 dynamic_size: 32 +filter out voxels: 1608 +filter out voxels: 160 +First batch: fn: 0.3959, fp: 0.4075, label 0: tensor(217), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.615969717502594 and after 0.7832219004631042 +num_clicks 50 points_length: 6249 dynamic_size: 46 +filter out voxels: 1571 +filter out voxels: 136 +First batch: fn: 0.3151, fp: 0.4262, label 0: tensor(220), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6437249779701233 and after 0.8119038343429565 +num_clicks 50 points_length: 5911 dynamic_size: 44 +filter out voxels: 1304 +filter out voxels: 119 +First batch: fn: 0.2429, fp: 0.3994, label 0: tensor(234), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.670117974281311 and after 0.835466742515564 +num_clicks 50 points_length: 5831 dynamic_size: 17 +filter out voxels: 1098 +filter out voxels: 103 +First batch: fn: 0.1822, fp: 0.3681, label 0: tensor(215), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6924102902412415 and after 0.8516274690628052 +num_clicks 50 points_length: 5598 dynamic_size: 19 +filter out voxels: 1021 +filter out voxels: 80 +First batch: fn: 0.1204, fp: 0.3823, label 0: tensor(233), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7084899544715881 and after 0.8664383888244629 +epoch: 6/20, iter: 1/42: loss:2.2863: rank:-1 +[23:18:29.963] epoch: 6/20, iter: 1/42: loss:2.2863: rank:-1 +num_clicks 50 points_length: 1121 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14979878067970276 and after 0.07217179983854294 +num_clicks 50 points_length: 15620 dynamic_size: 8 +filter out voxels: 7158 +filter out voxels: 0 +First batch: fn: 0.0508, fp: 13.8831, label 0: tensor(508), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1745414137840271 and after 0.1171339750289917 +num_clicks 50 points_length: 11235 dynamic_size: 36 +filter out voxels: 5041 +filter out voxels: 0 +First batch: fn: 0.0482, fp: 9.9741, label 0: tensor(536), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18179136514663696 and after 0.14003778994083405 +num_clicks 50 points_length: 11195 dynamic_size: 47 +filter out voxels: 5154 +filter out voxels: 0 +First batch: fn: 0.0152, fp: 9.9715, label 0: tensor(486), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19337627291679382 and after 0.164756178855896 +num_clicks 50 points_length: 9364 dynamic_size: 24 +filter out voxels: 3805 +filter out voxels: 0 +First batch: fn: 0.0169, fp: 8.3363, label 0: tensor(526), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1952558010816574 and after 0.18488404154777527 +num_clicks 50 points_length: 9049 dynamic_size: 12 +filter out voxels: 3673 +filter out voxels: 0 +First batch: fn: 0.0312, fp: 8.0410, label 0: tensor(511), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2009994089603424 and after 0.2036571502685547 +num_clicks 50 points_length: 9022 dynamic_size: 33 +filter out voxels: 4074 +filter out voxels: 0 +First batch: fn: 0.0464, fp: 8.0018, label 0: tensor(530), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21269887685775757 and after 0.2137877345085144 +num_clicks 50 points_length: 8419 dynamic_size: 33 +filter out voxels: 4662 +filter out voxels: 0 +First batch: fn: 0.1427, fp: 7.3675, label 0: tensor(534), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19954511523246765 and after 0.20819580554962158 +num_clicks 50 points_length: 7740 dynamic_size: 3 +filter out voxels: 5712 +filter out voxels: 0 +First batch: fn: 0.3113, fp: 6.5932, label 0: tensor(208), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1841316521167755 and after 0.1673329770565033 +num_clicks 50 points_length: 11490 dynamic_size: 1 +filter out voxels: 9175 +filter out voxels: 0 +First batch: fn: 0.5923, fp: 9.6574, label 0: tensor(267), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.18067973852157593 and after 0.19853000342845917 +num_clicks 50 points_length: 12505 dynamic_size: 7 +filter out voxels: 10747 +filter out voxels: 0 +First batch: fn: 0.2221, fp: 10.9331, label 0: tensor(267), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20228171348571777 and after 0.23081767559051514 +epoch: 6/20, iter: 2/42: loss:4.815: rank:-1 +[23:18:50.439] epoch: 6/20, iter: 2/42: loss:4.815: rank:-1 +num_clicks 50 points_length: 6375 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(469) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4264723062515259 and after 0.4746065139770508 +num_clicks 50 points_length: 11999 dynamic_size: 3 +filter out voxels: 6098 +filter out voxels: 1639 +First batch: fn: 0.5169, fp: 1.3653, label 0: tensor(321), label 1: tensor(413) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.624179482460022 and after 0.7162920236587524 +num_clicks 50 points_length: 5737 dynamic_size: 43 +filter out voxels: 2392 +filter out voxels: 264 +First batch: fn: 0.1642, fp: 0.7357, label 0: tensor(459), label 1: tensor(244) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6490634679794312 and after 0.772915780544281 +num_clicks 50 points_length: 3988 dynamic_size: 39 +filter out voxels: 1758 +filter out voxels: 212 +First batch: fn: 0.0601, fp: 0.5655, label 0: tensor(401), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6373083591461182 and after 0.7928022146224976 +num_clicks 50 points_length: 3001 dynamic_size: 45 +filter out voxels: 1169 +filter out voxels: 636 +First batch: fn: 0.0333, fp: 0.4375, label 0: tensor(325), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6489955186843872 and after 0.796384334564209 +num_clicks 50 points_length: 2819 dynamic_size: 48 +filter out voxels: 1006 +filter out voxels: 557 +First batch: fn: 0.0287, fp: 0.4135, label 0: tensor(307), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7153777480125427 and after 0.8263729810714722 +num_clicks 50 points_length: 2407 dynamic_size: 2 +filter out voxels: 696 +filter out voxels: 78 +First batch: fn: 0.0248, fp: 0.3528, label 0: tensor(329), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7631941437721252 and after 0.8568935394287109 +num_clicks 50 points_length: 1867 dynamic_size: 15 +filter out voxels: 347 +filter out voxels: 84 +First batch: fn: 0.0359, fp: 0.2569, label 0: tensor(320), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7807973027229309 and after 0.8724043369293213 +num_clicks 50 points_length: 1549 dynamic_size: 10 +filter out voxels: 91 +filter out voxels: 80 +First batch: fn: 0.0273, fp: 0.2157, label 0: tensor(266), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7703975439071655 and after 0.8710159063339233 +num_clicks 50 points_length: 1504 dynamic_size: 10 +filter out voxels: 91 +filter out voxels: 95 +First batch: fn: 0.0317, fp: 0.2042, label 0: tensor(320), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7791495323181152 and after 0.8774685263633728 +num_clicks 50 points_length: 1483 dynamic_size: 33 +filter out voxels: 89 +filter out voxels: 85 +First batch: fn: 0.0336, fp: 0.1991, label 0: tensor(315), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7761883735656738 and after 0.879051148891449 +epoch: 6/20, iter: 3/42: loss:1.4862: rank:-1 +[23:19:07.737] epoch: 6/20, iter: 3/42: loss:1.4862: rank:-1 +num_clicks 50 points_length: 5985 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(351) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45006778836250305 and after 0.3617134988307953 +num_clicks 50 points_length: 29498 dynamic_size: 24 +filter out voxels: 7904 +filter out voxels: 47620 +First batch: fn: 0.3340, fp: 0.5454, label 0: tensor(238), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4223112463951111 and after 0.40396180748939514 +num_clicks 50 points_length: 27367 dynamic_size: 44 +filter out voxels: 5960 +filter out voxels: 49549 +First batch: fn: 0.1930, fp: 0.6228, label 0: tensor(144), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.41611286997795105 and after 0.4096178114414215 +num_clicks 50 points_length: 31134 dynamic_size: 45 +filter out voxels: 11118 +filter out voxels: 46506 +First batch: fn: 0.1191, fp: 0.8091, label 0: tensor(210), label 1: tensor(421) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4324726462364197 and after 0.44471144676208496 +num_clicks 50 points_length: 24983 dynamic_size: 48 +filter out voxels: 7597 +filter out voxels: 45435 +First batch: fn: 0.0619, fp: 0.6829, label 0: tensor(245), label 1: tensor(376) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4499339461326599 and after 0.4741915762424469 +num_clicks 50 points_length: 19624 dynamic_size: 6 +filter out voxels: 5300 +filter out voxels: 45589 +First batch: fn: 0.0217, fp: 0.5633, label 0: tensor(343), label 1: tensor(222) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4786028563976288 and after 0.4932713508605957 +num_clicks 50 points_length: 15923 dynamic_size: 21 +filter out voxels: 3167 +filter out voxels: 45745 +First batch: fn: 0.0174, fp: 0.4573, label 0: tensor(457), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4864700436592102 and after 0.5080599784851074 +num_clicks 50 points_length: 13265 dynamic_size: 6 +filter out voxels: 1805 +filter out voxels: 46141 +First batch: fn: 0.0171, fp: 0.3784, label 0: tensor(375), label 1: tensor(198) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4856293797492981 and after 0.514702558517456 +num_clicks 50 points_length: 12672 dynamic_size: 41 +filter out voxels: 1454 +filter out voxels: 45432 +First batch: fn: 0.0106, fp: 0.3671, label 0: tensor(509), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.501220703125 and after 0.5295249223709106 +num_clicks 50 points_length: 10563 dynamic_size: 19 +filter out voxels: 1192 +filter out voxels: 44197 +First batch: fn: 0.0137, fp: 0.3012, label 0: tensor(478), label 1: tensor(161) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5013784766197205 and after 0.534285843372345 +num_clicks 50 points_length: 9587 dynamic_size: 27 +filter out voxels: 1260 +filter out voxels: 44620 +First batch: fn: 0.0139, fp: 0.2719, label 0: tensor(404), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5016284584999084 and after 0.5374875664710999 +epoch: 6/20, iter: 4/42: loss:2.6548: rank:-1 +[23:19:26.005] epoch: 6/20, iter: 4/42: loss:2.6548: rank:-1 +num_clicks 50 points_length: 26522 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4002578854560852 and after 0.5102192759513855 +num_clicks 50 points_length: 16005 dynamic_size: 14 +filter out voxels: 2824 +filter out voxels: 2566 +First batch: fn: 0.6855, fp: 0.2701, label 0: tensor(66), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.510686993598938 and after 0.5326641798019409 +num_clicks 50 points_length: 17004 dynamic_size: 11 +filter out voxels: 4197 +filter out voxels: 6565 +First batch: fn: 0.6225, fp: 0.5162, label 0: tensor(197), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5123879313468933 and after 0.6056239604949951 +num_clicks 50 points_length: 12609 dynamic_size: 12 +filter out voxels: 2702 +filter out voxels: 3662 +First batch: fn: 0.5493, fp: 0.4985, label 0: tensor(321), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6121507287025452 and after 0.6721366047859192 +num_clicks 50 points_length: 9574 dynamic_size: 23 +filter out voxels: 334 +filter out voxels: 2694 +First batch: fn: 0.4949, fp: 0.4043, label 0: tensor(281), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5888748168945312 and after 0.7258839011192322 +num_clicks 50 points_length: 7574 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 2421 +First batch: fn: 0.4295, fp: 0.3550, label 0: tensor(340), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.656917929649353 and after 0.7514415979385376 +num_clicks 50 points_length: 7912 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 3690 +First batch: fn: 0.3827, fp: 0.3062, label 0: tensor(296), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6665786504745483 and after 0.7951751947402954 +num_clicks 50 points_length: 6013 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 1796 +First batch: fn: 0.3258, fp: 0.2652, label 0: tensor(174), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7445311546325684 and after 0.819167971611023 +num_clicks 50 points_length: 4892 dynamic_size: 38 +filter out voxels: 8 +filter out voxels: 1049 +First batch: fn: 0.2903, fp: 0.2489, label 0: tensor(215), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7343089580535889 and after 0.8583829402923584 +num_clicks 50 points_length: 3758 dynamic_size: 20 +filter out voxels: 1 +filter out voxels: 194 +First batch: fn: 0.2219, fp: 0.2059, label 0: tensor(95), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7453354597091675 and after 0.8705891370773315 +num_clicks 50 points_length: 3640 dynamic_size: 3 +filter out voxels: 48 +filter out voxels: 117 +First batch: fn: 0.1853, fp: 0.2057, label 0: tensor(126), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7571325302124023 and after 0.8816768527030945 +epoch: 6/20, iter: 5/42: loss:1.7495: rank:-1 +[23:19:45.469] epoch: 6/20, iter: 5/42: loss:1.7495: rank:-1 +num_clicks 50 points_length: 1195 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0858583152294159 and after 0.07019400596618652 +num_clicks 50 points_length: 13059 dynamic_size: 11 +filter out voxels: 23005 +filter out voxels: 4191 +First batch: fn: 0.4285, fp: 21.1272, label 0: tensor(349), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13847005367279053 and after 0.1516411006450653 +num_clicks 50 points_length: 10341 dynamic_size: 19 +filter out voxels: 9530 +filter out voxels: 2668 +First batch: fn: 0.0636, fp: 8.5900, label 0: tensor(173), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.10435771942138672 and after 0.128243088722229 +num_clicks 50 points_length: 10626 dynamic_size: 7 +filter out voxels: 10041 +filter out voxels: 5793 +First batch: fn: 0.0335, fp: 8.8586, label 0: tensor(110), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09454207122325897 and after 0.11722646653652191 +num_clicks 50 points_length: 11146 dynamic_size: 35 +filter out voxels: 10731 +filter out voxels: 7245 +First batch: fn: 0.0686, fp: 9.2586, label 0: tensor(118), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08465216308832169 and after 0.11063975095748901 +num_clicks 50 points_length: 12516 dynamic_size: 35 +filter out voxels: 12081 +filter out voxels: 8079 +First batch: fn: 0.0393, fp: 10.4343, label 0: tensor(109), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08341962099075317 and after 0.10657096654176712 +num_clicks 50 points_length: 13214 dynamic_size: 24 +filter out voxels: 12804 +filter out voxels: 8546 +First batch: fn: 0.0410, fp: 11.0167, label 0: tensor(100), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07819345593452454 and after 0.10238973796367645 +num_clicks 50 points_length: 14038 dynamic_size: 31 +filter out voxels: 13625 +filter out voxels: 9307 +First batch: fn: 0.0310, fp: 11.7163, label 0: tensor(178), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08049021661281586 and after 0.10133709758520126 +num_clicks 50 points_length: 13659 dynamic_size: 16 +filter out voxels: 13298 +filter out voxels: 9977 +First batch: fn: 0.0669, fp: 11.3632, label 0: tensor(80), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06946812570095062 and after 0.09160548448562622 +num_clicks 50 points_length: 16561 dynamic_size: 31 +filter out voxels: 16128 +filter out voxels: 10502 +First batch: fn: 0.0377, fp: 13.8209, label 0: tensor(141), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07308223843574524 and after 0.09254063665866852 +num_clicks 50 points_length: 16129 dynamic_size: 24 +filter out voxels: 15718 +filter out voxels: 10591 +First batch: fn: 0.0477, fp: 13.4494, label 0: tensor(133), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07129623740911484 and after 0.09085705131292343 +epoch: 6/20, iter: 6/42: loss:4.1189: rank:-1 +[23:19:56.950] epoch: 6/20, iter: 6/42: loss:4.1189: rank:-1 +num_clicks 50 points_length: 1514 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4242303669452667 and after 0.13386157155036926 +num_clicks 50 points_length: 25610 dynamic_size: 43 +filter out voxels: 24709 +filter out voxels: 2913 +First batch: fn: 0.2550, fp: 16.6605, label 0: tensor(151), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4390549063682556 and after 0.15365809202194214 +num_clicks 50 points_length: 25141 dynamic_size: 36 +filter out voxels: 24107 +filter out voxels: 6878 +First batch: fn: 0.0225, fp: 16.5832, label 0: tensor(249), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4750993847846985 and after 0.1631595492362976 +num_clicks 50 points_length: 24011 dynamic_size: 17 +filter out voxels: 23373 +filter out voxels: 5561 +First batch: fn: 0.0192, fp: 15.8402, label 0: tensor(153), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4439539313316345 and after 0.16818580031394958 +num_clicks 50 points_length: 26105 dynamic_size: 41 +filter out voxels: 25557 +filter out voxels: 7091 +First batch: fn: 0.0165, fp: 17.2259, label 0: tensor(144), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4423893988132477 and after 0.1778341680765152 +num_clicks 50 points_length: 24879 dynamic_size: 22 +filter out voxels: 24457 +filter out voxels: 5555 +First batch: fn: 0.0244, fp: 16.4082, label 0: tensor(113), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.444069504737854 and after 0.17492642998695374 +num_clicks 50 points_length: 23772 dynamic_size: 43 +filter out voxels: 23347 +filter out voxels: 6926 +First batch: fn: 0.0132, fp: 15.6882, label 0: tensor(171), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4729155898094177 and after 0.1798444539308548 +num_clicks 50 points_length: 27874 dynamic_size: 42 +filter out voxels: 27472 +filter out voxels: 5696 +First batch: fn: 0.0291, fp: 18.3818, label 0: tensor(156), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4334079623222351 and after 0.17979848384857178 +num_clicks 50 points_length: 26102 dynamic_size: 48 +filter out voxels: 25683 +filter out voxels: 6367 +First batch: fn: 0.0198, fp: 17.2206, label 0: tensor(188), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43792858719825745 and after 0.20130105316638947 +num_clicks 50 points_length: 25473 dynamic_size: 40 +filter out voxels: 25085 +filter out voxels: 5175 +First batch: fn: 0.0198, fp: 16.8052, label 0: tensor(179), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4531177580356598 and after 0.2039690613746643 +num_clicks 50 points_length: 21550 dynamic_size: 17 +filter out voxels: 21206 +filter out voxels: 6567 +First batch: fn: 0.0297, fp: 14.2041, label 0: tensor(115), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4459640383720398 and after 0.2262752801179886 +epoch: 6/20, iter: 7/42: loss:2.9261: rank:-1 +[23:20:11.472] epoch: 6/20, iter: 7/42: loss:2.9261: rank:-1 +num_clicks 50 points_length: 9692 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(288) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42617368698120117 and after 0.3782782554626465 +num_clicks 50 points_length: 25349 dynamic_size: 12 +filter out voxels: 5432 +filter out voxels: 9967 +First batch: fn: 0.6929, fp: 1.9225, label 0: tensor(430), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.49325841665267944 and after 0.560966968536377 +num_clicks 50 points_length: 16171 dynamic_size: 46 +filter out voxels: 3240 +filter out voxels: 12891 +First batch: fn: 0.3013, fp: 1.3672, label 0: tensor(284), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48026761412620544 and after 0.6036694049835205 +num_clicks 50 points_length: 17513 dynamic_size: 40 +filter out voxels: 5869 +filter out voxels: 12027 +First batch: fn: 0.1119, fp: 1.6950, label 0: tensor(535), label 1: tensor(226) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5428879261016846 and after 0.6563551425933838 +num_clicks 50 points_length: 13293 dynamic_size: 33 +filter out voxels: 5936 +filter out voxels: 11960 +First batch: fn: 0.0534, fp: 1.3181, label 0: tensor(533), label 1: tensor(216) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5410782694816589 and after 0.6783366203308105 +num_clicks 50 points_length: 13505 dynamic_size: 37 +filter out voxels: 7171 +filter out voxels: 9679 +First batch: fn: 0.0230, fp: 1.3704, label 0: tensor(537), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5390415191650391 and after 0.6905778646469116 +num_clicks 50 points_length: 12626 dynamic_size: 30 +filter out voxels: 7162 +filter out voxels: 10407 +First batch: fn: 0.0195, fp: 1.2832, label 0: tensor(530), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5397316217422485 and after 0.7019243836402893 +num_clicks 50 points_length: 12135 dynamic_size: 9 +filter out voxels: 7149 +filter out voxels: 9435 +First batch: fn: 0.0224, fp: 1.2297, label 0: tensor(509), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5467548370361328 and after 0.7175207138061523 +num_clicks 50 points_length: 12022 dynamic_size: 42 +filter out voxels: 7524 +filter out voxels: 7926 +First batch: fn: 0.0237, fp: 1.2167, label 0: tensor(561), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6359460353851318 and after 0.7411787509918213 +num_clicks 50 points_length: 11489 dynamic_size: 22 +filter out voxels: 7420 +filter out voxels: 2118 +First batch: fn: 0.0290, fp: 1.1564, label 0: tensor(522), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6363431811332703 and after 0.7491008043289185 +num_clicks 50 points_length: 10623 dynamic_size: 33 +filter out voxels: 7746 +filter out voxels: 569 +First batch: fn: 0.0319, fp: 1.1835, label 0: tensor(535), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6415032148361206 and after 0.7519450783729553 +epoch: 6/20, iter: 8/42: loss:1.9237: rank:-1 +[23:20:31.366] epoch: 6/20, iter: 8/42: loss:1.9237: rank:-1 +num_clicks 50 points_length: 48917 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7067156434059143 and after 0.27898210287094116 +num_clicks 50 points_length: 43893 dynamic_size: 16 +filter out voxels: 3574 +filter out voxels: 183 +First batch: fn: 0.8009, fp: 0.0964, label 0: tensor(152), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6937747001647949 and after 0.41163599491119385 +num_clicks 50 points_length: 39477 dynamic_size: 10 +filter out voxels: 1924 +filter out voxels: 108 +First batch: fn: 0.7049, fp: 0.1021, label 0: tensor(340), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7123421430587769 and after 0.5031980276107788 +num_clicks 50 points_length: 34399 dynamic_size: 46 +filter out voxels: 1001 +filter out voxels: 6 +First batch: fn: 0.6211, fp: 0.0821, label 0: tensor(366), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7318443059921265 and after 0.5552452802658081 +num_clicks 50 points_length: 32454 dynamic_size: 7 +filter out voxels: 908 +filter out voxels: 4 +First batch: fn: 0.5750, fp: 0.0885, label 0: tensor(278), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7387747764587402 and after 0.5810525417327881 +num_clicks 50 points_length: 31602 dynamic_size: 37 +filter out voxels: 901 +filter out voxels: 4 +First batch: fn: 0.5353, fp: 0.1107, label 0: tensor(335), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7201610803604126 and after 0.6237940788269043 +num_clicks 50 points_length: 29369 dynamic_size: 38 +filter out voxels: 673 +filter out voxels: 1 +First batch: fn: 0.4951, fp: 0.1052, label 0: tensor(404), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7363104820251465 and after 0.6484162211418152 +num_clicks 50 points_length: 28733 dynamic_size: 8 +filter out voxels: 476 +filter out voxels: 0 +First batch: fn: 0.4619, fp: 0.1255, label 0: tensor(504), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7128684520721436 and after 0.6737303733825684 +num_clicks 50 points_length: 27016 dynamic_size: 44 +filter out voxels: 72 +filter out voxels: 0 +First batch: fn: 0.4351, fp: 0.1172, label 0: tensor(505), label 1: tensor(539) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7405712604522705 and after 0.7041847705841064 +num_clicks 50 points_length: 25965 dynamic_size: 29 +filter out voxels: 101 +filter out voxels: 0 +First batch: fn: 0.4049, fp: 0.1259, label 0: tensor(506), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7244629263877869 and after 0.7461317777633667 +num_clicks 50 points_length: 23251 dynamic_size: 3 +filter out voxels: 68 +filter out voxels: 0 +First batch: fn: 0.3672, fp: 0.1081, label 0: tensor(498), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.750700831413269 and after 0.7528584003448486 +epoch: 6/20, iter: 9/42: loss:1.7799: rank:-1 +[23:20:53.967] epoch: 6/20, iter: 9/42: loss:1.7799: rank:-1 +num_clicks 50 points_length: 39484 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5053503513336182 and after 0.14757861196994781 +num_clicks 50 points_length: 35466 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 1111 +First batch: fn: 0.9767, fp: 0.0104, label 0: tensor(165), label 1: tensor(544) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5311362147331238 and after 0.3113972246646881 +num_clicks 50 points_length: 28293 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 811 +First batch: fn: 0.9336, fp: 0.0041, label 0: tensor(268), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.604148268699646 and after 0.38677486777305603 +num_clicks 50 points_length: 23795 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 665 +First batch: fn: 0.9147, fp: 0.0007, label 0: tensor(97), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6248044371604919 and after 0.4319169521331787 +num_clicks 50 points_length: 19654 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 182 +First batch: fn: 0.9149, fp: 0.0009, label 0: tensor(143), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6531741619110107 and after 0.4711379110813141 +num_clicks 50 points_length: 16273 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 190 +First batch: fn: 0.9052, fp: 0.0004, label 0: tensor(67), label 1: tensor(541) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.644655168056488 and after 0.5139698386192322 +num_clicks 50 points_length: 14590 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 23 +First batch: fn: 0.8746, fp: 0.0007, label 0: tensor(103), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6761376261711121 and after 0.5458539128303528 +num_clicks 50 points_length: 9769 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 79 +First batch: fn: 0.8792, fp: 0.0007, label 0: tensor(118), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6418402194976807 and after 0.5858018398284912 +num_clicks 50 points_length: 9665 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 79 +First batch: fn: 0.8327, fp: 0.0001, label 0: tensor(37), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6963180303573608 and after 0.5755789875984192 +num_clicks 50 points_length: 9827 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.8483, fp: 0.0003, label 0: tensor(55), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6883527040481567 and after 0.5790672302246094 +num_clicks 50 points_length: 10548 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8388, fp: 0.0001, label 0: tensor(26), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7005581855773926 and after 0.5809364318847656 +epoch: 6/20, iter: 10/42: loss:2.3469: rank:-1 +[23:21:16.328] epoch: 6/20, iter: 10/42: loss:2.3469: rank:-1 +num_clicks 50 points_length: 1560 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(120) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21813976764678955 and after 0.2739793062210083 +num_clicks 50 points_length: 3772 dynamic_size: 3 +filter out voxels: 5854 +filter out voxels: 329 +First batch: fn: 0.4673, fp: 5.1885, label 0: tensor(351), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21884503960609436 and after 0.36712944507598877 +num_clicks 50 points_length: 5203 dynamic_size: 39 +filter out voxels: 9067 +filter out voxels: 900 +First batch: fn: 0.3391, fp: 6.5679, label 0: tensor(294), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2569987177848816 and after 0.4130016565322876 +num_clicks 50 points_length: 3907 dynamic_size: 29 +filter out voxels: 12007 +filter out voxels: 2 +First batch: fn: 0.2404, fp: 8.3147, label 0: tensor(256), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.30956244468688965 and after 0.4137800335884094 +num_clicks 50 points_length: 4124 dynamic_size: 8 +filter out voxels: 12319 +filter out voxels: 0 +First batch: fn: 0.1968, fp: 8.5353, label 0: tensor(190), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3274838328361511 and after 0.4178205132484436 +num_clicks 50 points_length: 3942 dynamic_size: 38 +filter out voxels: 13133 +filter out voxels: 0 +First batch: fn: 0.1603, fp: 9.1167, label 0: tensor(279), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33407944440841675 and after 0.4349074065685272 +num_clicks 50 points_length: 3491 dynamic_size: 19 +filter out voxels: 12319 +filter out voxels: 0 +First batch: fn: 0.1590, fp: 8.4968, label 0: tensor(196), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3317635655403137 and after 0.440408855676651 +num_clicks 50 points_length: 3279 dynamic_size: 26 +filter out voxels: 12610 +filter out voxels: 0 +First batch: fn: 0.1538, fp: 8.6994, label 0: tensor(236), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33663326501846313 and after 0.45500993728637695 +num_clicks 50 points_length: 2920 dynamic_size: 47 +filter out voxels: 11970 +filter out voxels: 0 +First batch: fn: 0.1667, fp: 8.1295, label 0: tensor(263), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34527358412742615 and after 0.47204288840293884 +num_clicks 50 points_length: 2559 dynamic_size: 27 +filter out voxels: 12399 +filter out voxels: 0 +First batch: fn: 0.0782, fp: 8.3846, label 0: tensor(163), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.30533504486083984 and after 0.4695875644683838 +num_clicks 50 points_length: 2492 dynamic_size: 4 +filter out voxels: 13447 +filter out voxels: 0 +First batch: fn: 0.0449, fp: 9.2449, label 0: tensor(198), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3282705247402191 and after 0.47085851430892944 +epoch: 6/20, iter: 11/42: loss:3.098: rank:-1 +[23:21:29.262] epoch: 6/20, iter: 11/42: loss:3.098: rank:-1 +num_clicks 50 points_length: 5649 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(361) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39734768867492676 and after 0.33830007910728455 +num_clicks 50 points_length: 4879 dynamic_size: 25 +filter out voxels: 583 +filter out voxels: 0 +First batch: fn: 0.3227, fp: 0.5410, label 0: tensor(297), label 1: tensor(335) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5060180425643921 and after 0.43591511249542236 +num_clicks 50 points_length: 3779 dynamic_size: 42 +filter out voxels: 681 +filter out voxels: 0 +First batch: fn: 0.1314, fp: 0.5376, label 0: tensor(328), label 1: tensor(205) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5689805150032043 and after 0.4913569688796997 +num_clicks 50 points_length: 2385 dynamic_size: 37 +filter out voxels: 47 +filter out voxels: 0 +First batch: fn: 0.0710, fp: 0.3512, label 0: tensor(279), label 1: tensor(158) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5901640057563782 and after 0.49521899223327637 +num_clicks 50 points_length: 2299 dynamic_size: 25 +filter out voxels: 50 +filter out voxels: 0 +First batch: fn: 0.0529, fp: 0.3540, label 0: tensor(329), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5939168930053711 and after 0.5193758010864258 +num_clicks 50 points_length: 1963 dynamic_size: 23 +filter out voxels: 3 +filter out voxels: 0 +First batch: fn: 0.0430, fp: 0.3045, label 0: tensor(281), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.603843629360199 and after 0.5297173261642456 +num_clicks 50 points_length: 1830 dynamic_size: 45 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.0404, fp: 0.2836, label 0: tensor(356), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6131541728973389 and after 0.5443739891052246 +num_clicks 50 points_length: 1646 dynamic_size: 41 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.0437, fp: 0.2477, label 0: tensor(245), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5932350158691406 and after 0.551558256149292 +num_clicks 50 points_length: 1723 dynamic_size: 21 +filter out voxels: 13 +filter out voxels: 0 +First batch: fn: 0.0351, fp: 0.2700, label 0: tensor(289), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6033649444580078 and after 0.5684947967529297 +num_clicks 50 points_length: 1622 dynamic_size: 12 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.0407, fp: 0.2464, label 0: tensor(241), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6084585189819336 and after 0.5838629603385925 +num_clicks 50 points_length: 1529 dynamic_size: 26 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.0451, fp: 0.2255, label 0: tensor(318), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6169015765190125 and after 0.585105299949646 +epoch: 6/20, iter: 12/42: loss:2.5778: rank:-1 +[23:21:48.634] epoch: 6/20, iter: 12/42: loss:2.5778: rank:-1 +num_clicks 50 points_length: 226 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.014536955393850803 and after 0.07894900441169739 +num_clicks 50 points_length: 6016 dynamic_size: 8 +filter out voxels: 5716 +filter out voxels: 22 +First batch: fn: 0.3451, fp: 26.2743, label 0: tensor(51), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25604957342147827 and after 0.17612974345684052 +num_clicks 50 points_length: 1253 dynamic_size: 49 +filter out voxels: 660 +filter out voxels: 161 +First batch: fn: 0.0221, fp: 5.5221, label 0: tensor(226), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28354424238204956 and after 0.4965497851371765 +num_clicks 50 points_length: 148 dynamic_size: 30 +filter out voxels: 2 +filter out voxels: 207 +First batch: fn: 0.4558, fp: 0.1991, label 0: tensor(22), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22310468554496765 and after 0.25639405846595764 +num_clicks 50 points_length: 2977 dynamic_size: 20 +filter out voxels: 2859 +filter out voxels: 157 +First batch: fn: 0.2788, fp: 12.8938, label 0: tensor(36), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22818845510482788 and after 0.30424055457115173 +num_clicks 50 points_length: 2277 dynamic_size: 44 +filter out voxels: 1995 +filter out voxels: 186 +First batch: fn: 0.1062, fp: 9.9690, label 0: tensor(93), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4835631549358368 and after 0.48423388600349426 +num_clicks 50 points_length: 502 dynamic_size: 43 +filter out voxels: 98 +filter out voxels: 127 +First batch: fn: 0.0487, fp: 2.1726, label 0: tensor(108), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46353116631507874 and after 0.6082559823989868 +num_clicks 50 points_length: 234 dynamic_size: 35 +filter out voxels: 2 +filter out voxels: 125 +First batch: fn: 0.0885, fp: 0.9469, label 0: tensor(93), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48500001430511475 and after 0.6667698621749878 +num_clicks 50 points_length: 158 dynamic_size: 2 +filter out voxels: 2 +filter out voxels: 113 +First batch: fn: 0.1549, fp: 0.5442, label 0: tensor(40), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3967457711696625 and after 0.7172378301620483 +num_clicks 50 points_length: 126 dynamic_size: 19 +filter out voxels: 12 +filter out voxels: 106 +First batch: fn: 0.2257, fp: 0.3319, label 0: tensor(29), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3269585371017456 and after 0.574866771697998 +num_clicks 50 points_length: 381 dynamic_size: 29 +filter out voxels: 270 +filter out voxels: 103 +First batch: fn: 0.3761, fp: 1.3097, label 0: tensor(35), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31493741273880005 and after 0.6213799715042114 +epoch: 6/20, iter: 13/42: loss:4.0354: rank:-1 +[23:21:58.171] epoch: 6/20, iter: 13/42: loss:4.0354: rank:-1 +num_clicks 50 points_length: 7653 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(340) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19534561038017273 and after 0.2928451895713806 +num_clicks 50 points_length: 6551 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 20 +First batch: fn: 0.8298, fp: 0.1303, label 0: tensor(24), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16365498304367065 and after 0.5844513177871704 +num_clicks 50 points_length: 5327 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 85 +First batch: fn: 0.5575, fp: 0.2608, label 0: tensor(98), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21992698311805725 and after 0.6421279907226562 +num_clicks 50 points_length: 4911 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3733, fp: 0.5099, label 0: tensor(179), label 1: tensor(513) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23418870568275452 and after 0.7292598485946655 +num_clicks 50 points_length: 4569 dynamic_size: 29 +filter out voxels: 5 +filter out voxels: 0 +First batch: fn: 0.1159, fp: 0.5807, label 0: tensor(517), label 1: tensor(295) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29855403304100037 and after 0.743020236492157 +num_clicks 50 points_length: 5402 dynamic_size: 6 +filter out voxels: 21 +filter out voxels: 0 +First batch: fn: 0.0838, fp: 0.4980, label 0: tensor(299), label 1: tensor(270) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27244797348976135 and after 0.7555505633354187 +num_clicks 50 points_length: 5138 dynamic_size: 36 +filter out voxels: 57 +filter out voxels: 0 +First batch: fn: 0.0846, fp: 0.4548, label 0: tensor(307), label 1: tensor(267) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26877743005752563 and after 0.7702178955078125 +num_clicks 50 points_length: 4531 dynamic_size: 14 +filter out voxels: 73 +filter out voxels: 0 +First batch: fn: 0.0469, fp: 0.4905, label 0: tensor(342), label 1: tensor(216) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29730528593063354 and after 0.7837637662887573 +num_clicks 50 points_length: 3955 dynamic_size: 31 +filter out voxels: 74 +filter out voxels: 0 +First batch: fn: 0.0592, fp: 0.4554, label 0: tensor(218), label 1: tensor(251) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2558712661266327 and after 0.782562792301178 +num_clicks 50 points_length: 3632 dynamic_size: 5 +filter out voxels: 97 +filter out voxels: 0 +First batch: fn: 0.0375, fp: 0.5316, label 0: tensor(486), label 1: tensor(181) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32682812213897705 and after 0.7834010124206543 +num_clicks 50 points_length: 4191 dynamic_size: 27 +filter out voxels: 70 +filter out voxels: 0 +First batch: fn: 0.0490, fp: 0.4573, label 0: tensor(341), label 1: tensor(242) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29179126024246216 and after 0.7992652654647827 +epoch: 6/20, iter: 14/42: loss:3.0095: rank:-1 +[23:22:16.187] epoch: 6/20, iter: 14/42: loss:3.0095: rank:-1 +num_clicks 50 points_length: 322339 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5243473052978516 and after 0.0817764550447464 +num_clicks 50 points_length: 301882 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9787, fp: 0.0005, label 0: tensor(41), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5740537643432617 and after 0.17409251630306244 +num_clicks 50 points_length: 276521 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9496, fp: 0.0014, label 0: tensor(112), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5444124937057495 and after 0.19451481103897095 +num_clicks 50 points_length: 266278 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9517, fp: 0.0013, label 0: tensor(61), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5653706789016724 and after 0.24015089869499207 +num_clicks 50 points_length: 257387 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 4 +First batch: fn: 0.9229, fp: 0.0013, label 0: tensor(117), label 1: tensor(534) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5566473007202148 and after 0.23751592636108398 +num_clicks 50 points_length: 254706 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.9320, fp: 0.0010, label 0: tensor(56), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5797242522239685 and after 0.2663886547088623 +num_clicks 50 points_length: 253204 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.9018, fp: 0.0008, label 0: tensor(85), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5799332857131958 and after 0.26916995644569397 +num_clicks 50 points_length: 247727 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.9118, fp: 0.0008, label 0: tensor(48), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5871585607528687 and after 0.3097968101501465 +num_clicks 50 points_length: 241237 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.8781, fp: 0.0006, label 0: tensor(35), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6120591163635254 and after 0.30082181096076965 +num_clicks 50 points_length: 239603 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.8933, fp: 0.0007, label 0: tensor(45), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6063039302825928 and after 0.3454887568950653 +num_clicks 50 points_length: 233698 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.8510, fp: 0.0009, label 0: tensor(48), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6295038461685181 and after 0.3544704020023346 +epoch: 6/20, iter: 15/42: loss:2.802: rank:-1 +[23:22:40.815] epoch: 6/20, iter: 15/42: loss:2.802: rank:-1 +num_clicks 50 points_length: 2108 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1494944989681244 and after 0.19712498784065247 +num_clicks 50 points_length: 5333 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 4182 +First batch: fn: 0.9948, fp: 0.0007, label 0: tensor(0), label 1: tensor(230) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42474329471588135 and after 0.32570767402648926 +num_clicks 50 points_length: 1535 dynamic_size: 6 +filter out voxels: 2 +filter out voxels: 531 +First batch: fn: 0.9948, fp: 0.0029, label 0: tensor(0), label 1: tensor(172) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2528904676437378 and after 0.26722121238708496 +num_clicks 50 points_length: 4095 dynamic_size: 20 +filter out voxels: 2 +filter out voxels: 2449 +First batch: fn: 0.9846, fp: 0.0033, label 0: tensor(0), label 1: tensor(260) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35117441415786743 and after 0.41973358392715454 +num_clicks 50 points_length: 1047 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 220 +First batch: fn: 0.9780, fp: 0.0031, label 0: tensor(0), label 1: tensor(166) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39646172523498535 and after 0.4399467706680298 +num_clicks 50 points_length: 730 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 96 +First batch: fn: 0.9838, fp: 0.0028, label 0: tensor(0), label 1: tensor(194) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3810768723487854 and after 0.4601588249206543 +num_clicks 50 points_length: 648 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 100 +First batch: fn: 0.9705, fp: 0.0026, label 0: tensor(0), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31000617146492004 and after 0.44207608699798584 +num_clicks 50 points_length: 789 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 80 +First batch: fn: 0.9767, fp: 0.0028, label 0: tensor(0), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3826346695423126 and after 0.47085443139076233 +num_clicks 50 points_length: 577 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 60 +First batch: fn: 0.9659, fp: 0.0028, label 0: tensor(0), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43449127674102783 and after 0.48369067907333374 +num_clicks 50 points_length: 504 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 65 +First batch: fn: 0.9584, fp: 0.0023, label 0: tensor(0), label 1: tensor(179) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45149046182632446 and after 0.48412376642227173 +num_clicks 50 points_length: 530 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 109 +First batch: fn: 0.9551, fp: 0.0030, label 0: tensor(0), label 1: tensor(199) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4365641474723816 and after 0.5092942118644714 +epoch: 6/20, iter: 16/42: loss:3.0979: rank:-1 +[23:22:57.010] epoch: 6/20, iter: 16/42: loss:3.0979: rank:-1 +num_clicks 50 points_length: 2049 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(204) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3964217007160187 and after 0.40878725051879883 +num_clicks 50 points_length: 1836 dynamic_size: 23 +filter out voxels: 4037 +filter out voxels: 101 +First batch: fn: 0.8535, fp: 0.1237, label 0: tensor(4), label 1: tensor(459) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47763192653656006 and after 0.5674406290054321 +num_clicks 50 points_length: 1825 dynamic_size: 16 +filter out voxels: 5556 +filter out voxels: 0 +First batch: fn: 0.6270, fp: 0.1902, label 0: tensor(5), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5613561868667603 and after 0.6673938035964966 +num_clicks 50 points_length: 1217 dynamic_size: 16 +filter out voxels: 7667 +filter out voxels: 0 +First batch: fn: 0.4796, fp: 0.2400, label 0: tensor(2), label 1: tensor(304) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5435214042663574 and after 0.705085813999176 +num_clicks 50 points_length: 1076 dynamic_size: 25 +filter out voxels: 6403 +filter out voxels: 0 +First batch: fn: 0.4236, fp: 0.2271, label 0: tensor(9), label 1: tensor(294) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5548925399780273 and after 0.7356421947479248 +num_clicks 50 points_length: 924 dynamic_size: 22 +filter out voxels: 7006 +filter out voxels: 0 +First batch: fn: 0.3636, fp: 0.2476, label 0: tensor(10), label 1: tensor(287) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5414580702781677 and after 0.7542733550071716 +num_clicks 50 points_length: 903 dynamic_size: 50 +filter out voxels: 6445 +filter out voxels: 0 +First batch: fn: 0.3229, fp: 0.2360, label 0: tensor(24), label 1: tensor(323) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5518062710762024 and after 0.7724205255508423 +num_clicks 50 points_length: 900 dynamic_size: 5 +filter out voxels: 5413 +filter out voxels: 0 +First batch: fn: 0.2796, fp: 0.2273, label 0: tensor(1), label 1: tensor(261) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5349656343460083 and after 0.7856295704841614 +num_clicks 50 points_length: 868 dynamic_size: 6 +filter out voxels: 5758 +filter out voxels: 0 +First batch: fn: 0.2363, fp: 0.2492, label 0: tensor(4), label 1: tensor(277) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5311374664306641 and after 0.796386182308197 +num_clicks 50 points_length: 843 dynamic_size: 22 +filter out voxels: 6232 +filter out voxels: 1 +First batch: fn: 0.1943, fp: 0.2753, label 0: tensor(9), label 1: tensor(299) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5361290574073792 and after 0.8157893419265747 +num_clicks 50 points_length: 796 dynamic_size: 36 +filter out voxels: 5517 +filter out voxels: 0 +First batch: fn: 0.1454, fp: 0.2645, label 0: tensor(16), label 1: tensor(340) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5459179878234863 and after 0.8270877599716187 +epoch: 6/20, iter: 17/42: loss:1.8857: rank:-1 +[23:23:11.854] epoch: 6/20, iter: 17/42: loss:1.8857: rank:-1 +num_clicks 50 points_length: 238 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22977958619594574 and after 0.2341529279947281 +num_clicks 50 points_length: 4497 dynamic_size: 37 +filter out voxels: 2104 +filter out voxels: 530 +First batch: fn: 0.1471, fp: 18.7479, label 0: tensor(360), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2949957251548767 and after 0.4088115096092224 +num_clicks 50 points_length: 624 dynamic_size: 41 +filter out voxels: 216 +filter out voxels: 948 +First batch: fn: 0.2521, fp: 2.3697, label 0: tensor(117), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3569605350494385 and after 0.5813177824020386 +num_clicks 50 points_length: 193 dynamic_size: 20 +filter out voxels: 46 +filter out voxels: 435 +First batch: fn: 0.1513, fp: 0.6597, label 0: tensor(71), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34382832050323486 and after 0.6256834268569946 +num_clicks 50 points_length: 138 dynamic_size: 49 +filter out voxels: 32 +filter out voxels: 411 +First batch: fn: 0.1891, fp: 0.3908, label 0: tensor(57), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2976389527320862 and after 0.5847232937812805 +num_clicks 50 points_length: 254 dynamic_size: 10 +filter out voxels: 64 +filter out voxels: 138 +First batch: fn: 0.1555, fp: 0.9118, label 0: tensor(80), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3332931399345398 and after 0.6363698840141296 +num_clicks 50 points_length: 97 dynamic_size: 13 +filter out voxels: 5 +filter out voxels: 759 +First batch: fn: 0.2017, fp: 0.2059, label 0: tensor(30), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25756561756134033 and after 0.585178017616272 +num_clicks 50 points_length: 201 dynamic_size: 48 +filter out voxels: 57 +filter out voxels: 418 +First batch: fn: 0.1681, fp: 0.6765, label 0: tensor(86), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36938905715942383 and after 0.6872079372406006 +num_clicks 50 points_length: 91 dynamic_size: 40 +filter out voxels: 1 +filter out voxels: 153 +First batch: fn: 0.2059, fp: 0.1765, label 0: tensor(44), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2558614909648895 and after 0.560421347618103 +num_clicks 50 points_length: 355 dynamic_size: 43 +filter out voxels: 134 +filter out voxels: 136 +First batch: fn: 0.1471, fp: 1.3445, label 0: tensor(116), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3630518913269043 and after 0.6885989904403687 +num_clicks 50 points_length: 96 dynamic_size: 22 +filter out voxels: 1 +filter out voxels: 383 +First batch: fn: 0.2227, fp: 0.1807, label 0: tensor(36), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24855542182922363 and after 0.5819175243377686 +epoch: 6/20, iter: 18/42: loss:3.2246: rank:-1 +[23:23:23.411] epoch: 6/20, iter: 18/42: loss:3.2246: rank:-1 +num_clicks 50 points_length: 350 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.048369161784648895 and after 0.1350754052400589 +num_clicks 50 points_length: 4383 dynamic_size: 3 +filter out voxels: 1363 +filter out voxels: 24187 +First batch: fn: 0.5725, fp: 2.0012, label 0: tensor(288), label 1: tensor(201) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.31671634316444397 and after 0.45946958661079407 +num_clicks 50 points_length: 1676 dynamic_size: 5 +filter out voxels: 15 +filter out voxels: 607 +First batch: fn: 0.1139, fp: 0.9066, label 0: tensor(107), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45142093300819397 and after 0.5802041292190552 +num_clicks 50 points_length: 629 dynamic_size: 40 +filter out voxels: 9 +filter out voxels: 121 +First batch: fn: 0.0957, fp: 0.8491, label 0: tensor(74), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3777480721473694 and after 0.6064852476119995 +num_clicks 50 points_length: 417 dynamic_size: 23 +filter out voxels: 66 +filter out voxels: 50 +First batch: fn: 0.0534, fp: 1.2267, label 0: tensor(33), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2740887999534607 and after 0.6546459197998047 +num_clicks 50 points_length: 331 dynamic_size: 15 +filter out voxels: 211 +filter out voxels: 44 +First batch: fn: 0.0746, fp: 0.9577, label 0: tensor(47), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38059577345848083 and after 0.6832026839256287 +num_clicks 50 points_length: 186 dynamic_size: 4 +filter out voxels: 9 +filter out voxels: 24 +First batch: fn: 0.0493, fp: 1.2484, label 0: tensor(58), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39061853289604187 and after 0.6918840408325195 +num_clicks 50 points_length: 159 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 25 +First batch: fn: 0.0575, fp: 1.2108, label 0: tensor(65), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38650625944137573 and after 0.7208728790283203 +num_clicks 50 points_length: 149 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 9 +First batch: fn: 0.0611, fp: 1.0276, label 0: tensor(73), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3918300271034241 and after 0.6865520477294922 +num_clicks 50 points_length: 210 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 85 +First batch: fn: 0.0570, fp: 1.0752, label 0: tensor(26), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2453642338514328 and after 0.6372385025024414 +num_clicks 50 points_length: 444 dynamic_size: 31 +filter out voxels: 151 +filter out voxels: 316 +First batch: fn: 0.0928, fp: 0.7275, label 0: tensor(50), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35475677251815796 and after 0.7265737056732178 +epoch: 6/20, iter: 19/42: loss:3.2133: rank:-1 +[23:23:33.974] epoch: 6/20, iter: 19/42: loss:3.2133: rank:-1 +num_clicks 50 points_length: 5126 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(191) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4771137833595276 and after 0.6400758624076843 +num_clicks 50 points_length: 3155 dynamic_size: 35 +filter out voxels: 299 +filter out voxels: 5484 +First batch: fn: 0.5382, fp: 0.0773, label 0: tensor(59), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5324042439460754 and after 0.7722721099853516 +num_clicks 50 points_length: 2363 dynamic_size: 29 +filter out voxels: 415 +filter out voxels: 6550 +First batch: fn: 0.0433, fp: 0.4177, label 0: tensor(321), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.79863440990448 and after 0.8669875860214233 +num_clicks 50 points_length: 1607 dynamic_size: 26 +filter out voxels: 1 +filter out voxels: 285 +First batch: fn: 0.0240, fp: 0.2895, label 0: tensor(347), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7295021414756775 and after 0.8698968887329102 +num_clicks 50 points_length: 1273 dynamic_size: 16 +filter out voxels: 3 +filter out voxels: 1317 +First batch: fn: 0.0238, fp: 0.2245, label 0: tensor(180), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7872747182846069 and after 0.8891746401786804 +num_clicks 50 points_length: 1240 dynamic_size: 6 +filter out voxels: 4 +filter out voxels: 45 +First batch: fn: 0.0205, fp: 0.2214, label 0: tensor(172), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7485674023628235 and after 0.8848246335983276 +num_clicks 50 points_length: 1172 dynamic_size: 4 +filter out voxels: 4 +filter out voxels: 308 +First batch: fn: 0.0174, fp: 0.2113, label 0: tensor(156), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8326945304870605 and after 0.8853927850723267 +num_clicks 50 points_length: 1186 dynamic_size: 30 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.0154, fp: 0.2160, label 0: tensor(302), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7003674507141113 and after 0.8645561933517456 +num_clicks 50 points_length: 1103 dynamic_size: 22 +filter out voxels: 3 +filter out voxels: 1487 +First batch: fn: 0.0267, fp: 0.1885, label 0: tensor(247), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8534619808197021 and after 0.8733242750167847 +num_clicks 50 points_length: 1007 dynamic_size: 45 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.0324, fp: 0.1641, label 0: tensor(269), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6863393783569336 and after 0.8504448533058167 +num_clicks 50 points_length: 985 dynamic_size: 50 +filter out voxels: 4 +filter out voxels: 3199 +First batch: fn: 0.0302, fp: 0.1619, label 0: tensor(237), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8462897539138794 and after 0.8860533237457275 +epoch: 6/20, iter: 20/42: loss:1.3166: rank:-1 +[23:23:47.605] epoch: 6/20, iter: 20/42: loss:1.3166: rank:-1 +num_clicks 50 points_length: 21161 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7962782382965088 and after 0.31833887100219727 +num_clicks 50 points_length: 12889 dynamic_size: 21 +filter out voxels: 1 +filter out voxels: 0 +First batch: fn: 0.5917, fp: 0.0174, label 0: tensor(25), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.794394850730896 and after 0.512440025806427 +num_clicks 50 points_length: 7383 dynamic_size: 8 +filter out voxels: 29 +filter out voxels: 17 +First batch: fn: 0.2974, fp: 0.0515, label 0: tensor(51), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7821621894836426 and after 0.5906951427459717 +num_clicks 50 points_length: 5564 dynamic_size: 37 +filter out voxels: 67 +filter out voxels: 8 +First batch: fn: 0.1785, fp: 0.0844, label 0: tensor(194), label 1: tensor(518) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7358477115631104 and after 0.6282573938369751 +num_clicks 50 points_length: 4268 dynamic_size: 17 +filter out voxels: 193 +filter out voxels: 0 +First batch: fn: 0.0795, fp: 0.1222, label 0: tensor(137), label 1: tensor(415) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8125083446502686 and after 0.6604334115982056 +num_clicks 50 points_length: 4163 dynamic_size: 1 +filter out voxels: 210 +filter out voxels: 7 +First batch: fn: 0.0361, fp: 0.1607, label 0: tensor(351), label 1: tensor(270) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8281270861625671 and after 0.6637020111083984 +num_clicks 50 points_length: 4330 dynamic_size: 37 +filter out voxels: 171 +filter out voxels: 0 +First batch: fn: 0.0623, fp: 0.1423, label 0: tensor(214), label 1: tensor(353) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8311954736709595 and after 0.6987960934638977 +num_clicks 50 points_length: 4370 dynamic_size: 47 +filter out voxels: 198 +filter out voxels: 4 +First batch: fn: 0.0130, fp: 0.1935, label 0: tensor(475), label 1: tensor(151) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8685322999954224 and after 0.7100464105606079 +num_clicks 50 points_length: 4023 dynamic_size: 28 +filter out voxels: 145 +filter out voxels: 0 +First batch: fn: 0.0488, fp: 0.1413, label 0: tensor(316), label 1: tensor(293) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8607474565505981 and after 0.728227436542511 +num_clicks 50 points_length: 3976 dynamic_size: 47 +filter out voxels: 154 +filter out voxels: 0 +First batch: fn: 0.0160, fp: 0.1719, label 0: tensor(453), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8789836168289185 and after 0.7621832489967346 +num_clicks 50 points_length: 3423 dynamic_size: 13 +filter out voxels: 118 +filter out voxels: 0 +First batch: fn: 0.0289, fp: 0.1329, label 0: tensor(404), label 1: tensor(226) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8779500722885132 and after 0.7795384526252747 +epoch: 6/20, iter: 21/42: loss:1.5412: rank:-1 +[23:24:07.170] epoch: 6/20, iter: 21/42: loss:1.5412: rank:-1 +num_clicks 50 points_length: 1765 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3753894567489624 and after 0.23018181324005127 +num_clicks 50 points_length: 5697 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 647 +First batch: fn: 0.8402, fp: 0.0002, label 0: tensor(38), label 1: tensor(550) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38147711753845215 and after 0.3576652407646179 +num_clicks 50 points_length: 4034 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 102 +First batch: fn: 0.7745, fp: 0.0007, label 0: tensor(0), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.385443776845932 and after 0.4693487882614136 +num_clicks 50 points_length: 2119 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7596, fp: 0.0010, label 0: tensor(0), label 1: tensor(389) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38592416048049927 and after 0.5460828542709351 +num_clicks 50 points_length: 1250 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7482, fp: 0.0013, label 0: tensor(0), label 1: tensor(249) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4627162516117096 and after 0.5625756978988647 +num_clicks 50 points_length: 1179 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7359, fp: 0.0012, label 0: tensor(0), label 1: tensor(246) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3816360831260681 and after 0.5923919081687927 +num_clicks 50 points_length: 876 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7377, fp: 0.0014, label 0: tensor(0), label 1: tensor(240) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3844379484653473 and after 0.5993863344192505 +num_clicks 50 points_length: 886 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7284, fp: 0.0025, label 0: tensor(0), label 1: tensor(273) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37393462657928467 and after 0.6327165961265564 +num_clicks 50 points_length: 578 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7248, fp: 0.0030, label 0: tensor(0), label 1: tensor(252) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38250622153282166 and after 0.5836626291275024 +num_clicks 50 points_length: 1161 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7330, fp: 0.0043, label 0: tensor(0), label 1: tensor(302) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38420116901397705 and after 0.612026035785675 +num_clicks 50 points_length: 880 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7120, fp: 0.0043, label 0: tensor(0), label 1: tensor(331) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.423883318901062 and after 0.6037361025810242 +epoch: 6/20, iter: 22/42: loss:2.872: rank:-1 +[23:24:23.091] epoch: 6/20, iter: 22/42: loss:2.872: rank:-1 +num_clicks 50 points_length: 866 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2919384837150574 and after 0.08166886121034622 +num_clicks 50 points_length: 6318 dynamic_size: 2 +filter out voxels: 5660 +filter out voxels: 323 +First batch: fn: 0.3233, fp: 6.9723, label 0: tensor(112), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3062256872653961 and after 0.10590671002864838 +num_clicks 50 points_length: 8107 dynamic_size: 33 +filter out voxels: 7264 +filter out voxels: 460 +First batch: fn: 0.0081, fp: 9.3533, label 0: tensor(225), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2819397747516632 and after 0.12555304169654846 +num_clicks 50 points_length: 7601 dynamic_size: 46 +filter out voxels: 7174 +filter out voxels: 566 +First batch: fn: 0.0300, fp: 8.7471, label 0: tensor(155), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29447126388549805 and after 0.13687831163406372 +num_clicks 50 points_length: 6610 dynamic_size: 29 +filter out voxels: 6333 +filter out voxels: 953 +First batch: fn: 0.0693, fp: 7.5635, label 0: tensor(70), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29945826530456543 and after 0.1443260908126831 +num_clicks 50 points_length: 6399 dynamic_size: 44 +filter out voxels: 6157 +filter out voxels: 937 +First batch: fn: 0.0589, fp: 7.3303, label 0: tensor(84), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29831862449645996 and after 0.15781886875629425 +num_clicks 50 points_length: 6166 dynamic_size: 21 +filter out voxels: 5909 +filter out voxels: 768 +First batch: fn: 0.0381, fp: 7.0820, label 0: tensor(86), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.30166661739349365 and after 0.17420223355293274 +num_clicks 50 points_length: 5331 dynamic_size: 46 +filter out voxels: 5077 +filter out voxels: 938 +First batch: fn: 0.0358, fp: 6.1201, label 0: tensor(117), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.307582288980484 and after 0.19464801251888275 +num_clicks 50 points_length: 4606 dynamic_size: 29 +filter out voxels: 4370 +filter out voxels: 919 +First batch: fn: 0.0277, fp: 5.2910, label 0: tensor(97), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3095477223396301 and after 0.20526227355003357 +num_clicks 50 points_length: 4515 dynamic_size: 36 +filter out voxels: 4279 +filter out voxels: 1026 +First batch: fn: 0.0346, fp: 5.1790, label 0: tensor(99), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.30940279364585876 and after 0.21919679641723633 +num_clicks 50 points_length: 4523 dynamic_size: 39 +filter out voxels: 4298 +filter out voxels: 788 +First batch: fn: 0.0393, fp: 5.1836, label 0: tensor(98), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3177439570426941 and after 0.21906697750091553 +epoch: 6/20, iter: 23/42: loss:3.2445: rank:-1 +[23:24:35.219] epoch: 6/20, iter: 23/42: loss:3.2445: rank:-1 +num_clicks 50 points_length: 1033 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06072211265563965 and after 0.3566523790359497 +num_clicks 50 points_length: 724 dynamic_size: 12 +filter out voxels: 851 +filter out voxels: 37 +First batch: fn: 0.9070, fp: 0.1297, label 0: tensor(1), label 1: tensor(167) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.14122019708156586 and after 0.48834848403930664 +num_clicks 50 points_length: 653 dynamic_size: 16 +filter out voxels: 3151 +filter out voxels: 0 +First batch: fn: 0.8163, fp: 0.4639, label 0: tensor(7), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15787026286125183 and after 0.5268840789794922 +num_clicks 50 points_length: 560 dynamic_size: 31 +filter out voxels: 4417 +filter out voxels: 0 +First batch: fn: 0.7336, fp: 0.6988, label 0: tensor(13), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16206178069114685 and after 0.5748507976531982 +num_clicks 50 points_length: 461 dynamic_size: 49 +filter out voxels: 5080 +filter out voxels: 0 +First batch: fn: 0.6280, fp: 0.8446, label 0: tensor(25), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15942811965942383 and after 0.6041148900985718 +num_clicks 50 points_length: 367 dynamic_size: 49 +filter out voxels: 5987 +filter out voxels: 0 +First batch: fn: 0.5487, fp: 1.0350, label 0: tensor(29), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16836006939411163 and after 0.6278035044670105 +num_clicks 50 points_length: 331 dynamic_size: 18 +filter out voxels: 5192 +filter out voxels: 0 +First batch: fn: 0.5142, fp: 0.9610, label 0: tensor(15), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16921745240688324 and after 0.6421200633049011 +num_clicks 50 points_length: 309 dynamic_size: 24 +filter out voxels: 5794 +filter out voxels: 0 +First batch: fn: 0.4538, fp: 1.0630, label 0: tensor(16), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16924890875816345 and after 0.6725410223007202 +num_clicks 50 points_length: 294 dynamic_size: 5 +filter out voxels: 5956 +filter out voxels: 0 +First batch: fn: 0.3495, fp: 1.0973, label 0: tensor(4), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1607302725315094 and after 0.6741406321525574 +num_clicks 50 points_length: 275 dynamic_size: 37 +filter out voxels: 7186 +filter out voxels: 0 +First batch: fn: 0.2806, fp: 1.3404, label 0: tensor(32), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17647750675678253 and after 0.7416276931762695 +num_clicks 50 points_length: 264 dynamic_size: 13 +filter out voxels: 4595 +filter out voxels: 0 +First batch: fn: 0.1338, fp: 1.0148, label 0: tensor(11), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1854581981897354 and after 0.7184113264083862 +epoch: 6/20, iter: 24/42: loss:3.2979: rank:-1 +[23:24:45.244] epoch: 6/20, iter: 24/42: loss:3.2979: rank:-1 +num_clicks 50 points_length: 366 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46420538425445557 and after 0.4496408700942993 +num_clicks 50 points_length: 212 dynamic_size: 22 +filter out voxels: 19 +filter out voxels: 0 +First batch: fn: 0.1120, fp: 0.4672, label 0: tensor(62), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39964959025382996 and after 0.4689040184020996 +num_clicks 50 points_length: 405 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0082, fp: 1.0984, label 0: tensor(110), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3983103036880493 and after 0.5269885659217834 +num_clicks 50 points_length: 240 dynamic_size: 25 +filter out voxels: 13 +filter out voxels: 0 +First batch: fn: 0.0628, fp: 0.5929, label 0: tensor(76), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4030240476131439 and after 0.5708423256874084 +num_clicks 50 points_length: 165 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0601, fp: 0.3907, label 0: tensor(33), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4272874593734741 and after 0.5721181631088257 +num_clicks 50 points_length: 174 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0301, fp: 0.4454, label 0: tensor(59), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39614710211753845 and after 0.5976714491844177 +num_clicks 50 points_length: 127 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0628, fp: 0.2842, label 0: tensor(55), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4026238024234772 and after 0.6044353246688843 +num_clicks 50 points_length: 117 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0628, fp: 0.2568, label 0: tensor(72), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3958025872707367 and after 0.6085659861564636 +num_clicks 50 points_length: 110 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0738, fp: 0.2268, label 0: tensor(30), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42780184745788574 and after 0.5844756364822388 +num_clicks 50 points_length: 149 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0492, fp: 0.3579, label 0: tensor(69), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3993731141090393 and after 0.61357182264328 +num_clicks 50 points_length: 107 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0656, fp: 0.2268, label 0: tensor(50), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4118351638317108 and after 0.6154963970184326 +epoch: 6/20, iter: 25/42: loss:2.4248: rank:-1 +[23:24:57.778] epoch: 6/20, iter: 25/42: loss:2.4248: rank:-1 +num_clicks 50 points_length: 320 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7235267162322998 and after 0.5821652412414551 +num_clicks 50 points_length: 648 dynamic_size: 21 +filter out voxels: 74 +filter out voxels: 15 +First batch: fn: 0.4919, fp: 0.0108, label 0: tensor(1), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46069058775901794 and after 0.7448110580444336 +num_clicks 50 points_length: 206 dynamic_size: 45 +filter out voxels: 187 +filter out voxels: 23 +First batch: fn: 0.3967, fp: 0.0144, label 0: tensor(1), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4469618797302246 and after 0.8046246767044067 +num_clicks 50 points_length: 97 dynamic_size: 32 +filter out voxels: 219 +filter out voxels: 0 +First batch: fn: 0.3889, fp: 0.0166, label 0: tensor(1), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4443097710609436 and after 0.8159921765327454 +num_clicks 50 points_length: 73 dynamic_size: 26 +filter out voxels: 300 +filter out voxels: 0 +First batch: fn: 0.3924, fp: 0.0186, label 0: tensor(1), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5577948689460754 and after 0.7801158428192139 +num_clicks 50 points_length: 144 dynamic_size: 14 +filter out voxels: 288 +filter out voxels: 0 +First batch: fn: 0.3875, fp: 0.0182, label 0: tensor(0), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44753360748291016 and after 0.7953164577484131 +num_clicks 50 points_length: 120 dynamic_size: 16 +filter out voxels: 295 +filter out voxels: 0 +First batch: fn: 0.3807, fp: 0.0183, label 0: tensor(0), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44438135623931885 and after 0.800601065158844 +num_clicks 50 points_length: 110 dynamic_size: 37 +filter out voxels: 351 +filter out voxels: 0 +First batch: fn: 0.3776, fp: 0.0200, label 0: tensor(4), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44354012608528137 and after 0.805518388748169 +num_clicks 50 points_length: 113 dynamic_size: 47 +filter out voxels: 149 +filter out voxels: 0 +First batch: fn: 0.3632, fp: 0.0172, label 0: tensor(2), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44401806592941284 and after 0.8116397261619568 +num_clicks 50 points_length: 107 dynamic_size: 9 +filter out voxels: 223 +filter out voxels: 1 +First batch: fn: 0.3513, fp: 0.0243, label 0: tensor(1), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4444679617881775 and after 0.8176879286766052 +num_clicks 50 points_length: 106 dynamic_size: 21 +filter out voxels: 160 +filter out voxels: 0 +First batch: fn: 0.3362, fp: 0.0244, label 0: tensor(3), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44517090916633606 and after 0.814932107925415 +epoch: 6/20, iter: 26/42: loss:1.9496: rank:-1 +[23:25:08.176] epoch: 6/20, iter: 26/42: loss:1.9496: rank:-1 +num_clicks 50 points_length: 5322 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(241) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4213065505027771 and after 0.39055418968200684 +num_clicks 50 points_length: 2906 dynamic_size: 24 +filter out voxels: 201 +filter out voxels: 380 +First batch: fn: 0.9501, fp: 0.0046, label 0: tensor(30), label 1: tensor(524) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6564135551452637 and after 0.5174828767776489 +num_clicks 50 points_length: 1899 dynamic_size: 32 +filter out voxels: 297 +filter out voxels: 1 +First batch: fn: 0.8903, fp: 0.0041, label 0: tensor(0), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6990331411361694 and after 0.5515804290771484 +num_clicks 50 points_length: 1951 dynamic_size: 29 +filter out voxels: 241 +filter out voxels: 0 +First batch: fn: 0.8477, fp: 0.0097, label 0: tensor(0), label 1: tensor(458) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7060641646385193 and after 0.5830759406089783 +num_clicks 50 points_length: 1572 dynamic_size: 45 +filter out voxels: 386 +filter out voxels: 0 +First batch: fn: 0.8240, fp: 0.0098, label 0: tensor(0), label 1: tensor(454) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.706936776638031 and after 0.5990322232246399 +num_clicks 50 points_length: 1229 dynamic_size: 1 +filter out voxels: 370 +filter out voxels: 0 +First batch: fn: 0.8192, fp: 0.0100, label 0: tensor(0), label 1: tensor(286) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7144957184791565 and after 0.6100829243659973 +num_clicks 50 points_length: 1101 dynamic_size: 41 +filter out voxels: 364 +filter out voxels: 0 +First batch: fn: 0.8106, fp: 0.0099, label 0: tensor(0), label 1: tensor(294) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7168892621994019 and after 0.6288222074508667 +num_clicks 50 points_length: 1041 dynamic_size: 49 +filter out voxels: 259 +filter out voxels: 0 +First batch: fn: 0.7872, fp: 0.0090, label 0: tensor(1), label 1: tensor(249) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7252650260925293 and after 0.6419942378997803 +num_clicks 50 points_length: 973 dynamic_size: 41 +filter out voxels: 314 +filter out voxels: 0 +First batch: fn: 0.7712, fp: 0.0098, label 0: tensor(1), label 1: tensor(283) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7278839349746704 and after 0.6587690711021423 +num_clicks 50 points_length: 923 dynamic_size: 44 +filter out voxels: 192 +filter out voxels: 0 +First batch: fn: 0.7484, fp: 0.0094, label 0: tensor(1), label 1: tensor(254) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.724073588848114 and after 0.6628390550613403 +num_clicks 50 points_length: 892 dynamic_size: 22 +filter out voxels: 170 +filter out voxels: 0 +First batch: fn: 0.7441, fp: 0.0087, label 0: tensor(0), label 1: tensor(207) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7333037853240967 and after 0.6739529371261597 +epoch: 6/20, iter: 27/42: loss:1.701: rank:-1 +[23:25:24.861] epoch: 6/20, iter: 27/42: loss:1.701: rank:-1 +num_clicks 50 points_length: 13045 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3657403886318207 and after 0.5465317964553833 +num_clicks 50 points_length: 6749 dynamic_size: 36 +filter out voxels: 25 +filter out voxels: 0 +First batch: fn: 0.5120, fp: 0.9277, label 0: tensor(258), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5692884922027588 and after 0.7011487483978271 +num_clicks 50 points_length: 4595 dynamic_size: 30 +filter out voxels: 15 +filter out voxels: 29 +First batch: fn: 0.2638, fp: 0.8280, label 0: tensor(337), label 1: tensor(403) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.636297345161438 and after 0.785692572593689 +num_clicks 50 points_length: 3739 dynamic_size: 38 +filter out voxels: 2 +filter out voxels: 17 +First batch: fn: 0.0978, fp: 0.6666, label 0: tensor(533), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7101139426231384 and after 0.802788257598877 +num_clicks 50 points_length: 3361 dynamic_size: 12 +filter out voxels: 19 +filter out voxels: 16 +First batch: fn: 0.0803, fp: 0.6180, label 0: tensor(464), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7042127847671509 and after 0.8266041874885559 +num_clicks 50 points_length: 3024 dynamic_size: 13 +filter out voxels: 27 +filter out voxels: 15 +First batch: fn: 0.0545, fp: 0.5411, label 0: tensor(454), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6970453262329102 and after 0.842731773853302 +num_clicks 50 points_length: 2760 dynamic_size: 17 +filter out voxels: 24 +filter out voxels: 13 +First batch: fn: 0.0402, fp: 0.4896, label 0: tensor(423), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6853681802749634 and after 0.8488945960998535 +num_clicks 50 points_length: 2751 dynamic_size: 10 +filter out voxels: 33 +filter out voxels: 14 +First batch: fn: 0.0367, fp: 0.4584, label 0: tensor(344), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6905890703201294 and after 0.855725884437561 +num_clicks 50 points_length: 2512 dynamic_size: 43 +filter out voxels: 31 +filter out voxels: 12 +First batch: fn: 0.0316, fp: 0.4483, label 0: tensor(375), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6859655976295471 and after 0.8606997728347778 +num_clicks 50 points_length: 2339 dynamic_size: 49 +filter out voxels: 33 +filter out voxels: 12 +First batch: fn: 0.0278, fp: 0.4408, label 0: tensor(356), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6853115558624268 and after 0.8628647327423096 +num_clicks 50 points_length: 2354 dynamic_size: 19 +filter out voxels: 29 +filter out voxels: 11 +First batch: fn: 0.0249, fp: 0.4315, label 0: tensor(351), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6728764772415161 and after 0.8640398383140564 +epoch: 6/20, iter: 28/42: loss:1.6302: rank:-1 +[23:25:43.023] epoch: 6/20, iter: 28/42: loss:1.6302: rank:-1 +num_clicks 50 points_length: 6924 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4955544173717499 and after 0.5698182582855225 +num_clicks 50 points_length: 7273 dynamic_size: 28 +filter out voxels: 725 +filter out voxels: 298 +First batch: fn: 0.4838, fp: 0.2866, label 0: tensor(409), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6391235589981079 and after 0.7237682342529297 +num_clicks 50 points_length: 4572 dynamic_size: 22 +filter out voxels: 181 +filter out voxels: 13 +First batch: fn: 0.2898, fp: 0.2574, label 0: tensor(245), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6561906337738037 and after 0.7515659332275391 +num_clicks 50 points_length: 4862 dynamic_size: 47 +filter out voxels: 123 +filter out voxels: 18 +First batch: fn: 0.1396, fp: 0.3426, label 0: tensor(152), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6456441283226013 and after 0.7554632425308228 +num_clicks 50 points_length: 4552 dynamic_size: 34 +filter out voxels: 68 +filter out voxels: 24 +First batch: fn: 0.0215, fp: 0.5566, label 0: tensor(533), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7031899094581604 and after 0.782905638217926 +num_clicks 50 points_length: 3951 dynamic_size: 20 +filter out voxels: 76 +filter out voxels: 20 +First batch: fn: 0.1008, fp: 0.3510, label 0: tensor(328), label 1: tensor(358) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7005100250244141 and after 0.8145400285720825 +num_clicks 50 points_length: 3297 dynamic_size: 20 +filter out voxels: 19 +filter out voxels: 17 +First batch: fn: 0.0312, fp: 0.3634, label 0: tensor(518), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7055960893630981 and after 0.8220012187957764 +num_clicks 50 points_length: 3167 dynamic_size: 17 +filter out voxels: 65 +filter out voxels: 16 +First batch: fn: 0.0240, fp: 0.3515, label 0: tensor(517), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7125837206840515 and after 0.8303331136703491 +num_clicks 50 points_length: 2985 dynamic_size: 18 +filter out voxels: 124 +filter out voxels: 17 +First batch: fn: 0.0296, fp: 0.3199, label 0: tensor(517), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7089763879776001 and after 0.8467694520950317 +num_clicks 50 points_length: 2569 dynamic_size: 8 +filter out voxels: 83 +filter out voxels: 14 +First batch: fn: 0.0164, fp: 0.3086, label 0: tensor(508), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7134979963302612 and after 0.8577510714530945 +num_clicks 50 points_length: 2312 dynamic_size: 34 +filter out voxels: 129 +filter out voxels: 13 +First batch: fn: 0.0183, fp: 0.2815, label 0: tensor(497), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7102540731430054 and after 0.8655737638473511 +epoch: 6/20, iter: 29/42: loss:1.3841: rank:-1 +[23:26:02.917] epoch: 6/20, iter: 29/42: loss:1.3841: rank:-1 +num_clicks 50 points_length: 461 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05870366096496582 and after 0.2766484022140503 +num_clicks 50 points_length: 590 dynamic_size: 2 +filter out voxels: 12 +filter out voxels: 1153 +First batch: fn: 0.2343, fp: 1.0456, label 0: tensor(138), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2597961723804474 and after 0.33860573172569275 +num_clicks 50 points_length: 265 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 9852 +First batch: fn: 0.4295, fp: 0.1453, label 0: tensor(41), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2762420177459717 and after 0.3305593729019165 +num_clicks 50 points_length: 360 dynamic_size: 32 +filter out voxels: 1 +filter out voxels: 18390 +First batch: fn: 0.2733, fp: 0.5076, label 0: tensor(85), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2699044346809387 and after 0.3469376862049103 +num_clicks 50 points_length: 307 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 22962 +First batch: fn: 0.2928, fp: 0.3731, label 0: tensor(77), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2686815857887268 and after 0.3532198369503021 +num_clicks 50 points_length: 305 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 26223 +First batch: fn: 0.2798, fp: 0.3818, label 0: tensor(87), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2532396614551544 and after 0.36887186765670776 +num_clicks 50 points_length: 256 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 29483 +First batch: fn: 0.3037, fp: 0.2516, label 0: tensor(56), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2593560516834259 and after 0.3745253086090088 +num_clicks 50 points_length: 256 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 30555 +First batch: fn: 0.2863, fp: 0.2690, label 0: tensor(78), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25542762875556946 and after 0.37817472219467163 +num_clicks 50 points_length: 268 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 31247 +First batch: fn: 0.2473, fp: 0.3341, label 0: tensor(98), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2513156533241272 and after 0.394288569688797 +num_clicks 50 points_length: 240 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 31844 +First batch: fn: 0.2711, fp: 0.2495, label 0: tensor(67), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26633965969085693 and after 0.39088165760040283 +num_clicks 50 points_length: 253 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 31715 +First batch: fn: 0.2646, fp: 0.2842, label 0: tensor(65), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2546014189720154 and after 0.3958750069141388 +epoch: 6/20, iter: 30/42: loss:4.8785: rank:-1 +[23:26:17.864] epoch: 6/20, iter: 30/42: loss:4.8785: rank:-1 +num_clicks 50 points_length: 1525 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4516058564186096 and after 0.6340430974960327 +num_clicks 50 points_length: 1191 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 11 +First batch: fn: 0.5475, fp: 0.0020, label 0: tensor(0), label 1: tensor(296) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5849440693855286 and after 0.71657395362854 +num_clicks 50 points_length: 1458 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3151, fp: 0.0537, label 0: tensor(6), label 1: tensor(361) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5663076639175415 and after 0.7612451314926147 +num_clicks 50 points_length: 1146 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2537, fp: 0.0832, label 0: tensor(3), label 1: tensor(277) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5813020467758179 and after 0.7991399765014648 +num_clicks 50 points_length: 747 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2237, fp: 0.1059, label 0: tensor(4), label 1: tensor(232) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5747970342636108 and after 0.7909205555915833 +num_clicks 50 points_length: 881 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2006, fp: 0.1312, label 0: tensor(4), label 1: tensor(193) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5747462511062622 and after 0.8139379024505615 +num_clicks 50 points_length: 698 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1801, fp: 0.1419, label 0: tensor(18), label 1: tensor(203) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5855710506439209 and after 0.8302747011184692 +num_clicks 50 points_length: 570 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1679, fp: 0.1548, label 0: tensor(13), label 1: tensor(213) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.582770049571991 and after 0.8248334527015686 +num_clicks 50 points_length: 623 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1531, fp: 0.1753, label 0: tensor(3), label 1: tensor(197) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5811395645141602 and after 0.8381519317626953 +num_clicks 50 points_length: 559 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1213, fp: 0.1881, label 0: tensor(17), label 1: tensor(192) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5844733119010925 and after 0.8362137079238892 +num_clicks 50 points_length: 583 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1044, fp: 0.2095, label 0: tensor(28), label 1: tensor(186) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5840222835540771 and after 0.8350842595100403 +epoch: 6/20, iter: 31/42: loss:1.6947: rank:-1 +[23:26:31.118] epoch: 6/20, iter: 31/42: loss:1.6947: rank:-1 +num_clicks 50 points_length: 957 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(131) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1569279432296753 and after 0.40936440229415894 +num_clicks 50 points_length: 6276 dynamic_size: 13 +filter out voxels: 298 +filter out voxels: 4969 +First batch: fn: 0.5390, fp: 0.0789, label 0: tensor(3), label 1: tensor(315) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.255010187625885 and after 0.6820504665374756 +num_clicks 50 points_length: 783 dynamic_size: 29 +filter out voxels: 1605 +filter out voxels: 273 +First batch: fn: 0.1926, fp: 0.5834, label 0: tensor(20), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5269425511360168 and after 0.7110525369644165 +num_clicks 50 points_length: 388 dynamic_size: 2 +filter out voxels: 2978 +filter out voxels: 0 +First batch: fn: 0.0897, fp: 1.1278, label 0: tensor(2), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.49212849140167236 and after 0.6890159249305725 +num_clicks 50 points_length: 364 dynamic_size: 10 +filter out voxels: 3837 +filter out voxels: 0 +First batch: fn: 0.0494, fp: 1.5057, label 0: tensor(26), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.49694931507110596 and after 0.6814807653427124 +num_clicks 50 points_length: 437 dynamic_size: 20 +filter out voxels: 3817 +filter out voxels: 0 +First batch: fn: 0.0218, fp: 1.5466, label 0: tensor(103), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5895372629165649 and after 0.7588441371917725 +num_clicks 50 points_length: 314 dynamic_size: 44 +filter out voxels: 211 +filter out voxels: 0 +First batch: fn: 0.0265, fp: 0.9471, label 0: tensor(59), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5683350563049316 and after 0.7464603185653687 +num_clicks 50 points_length: 302 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0084, fp: 1.1080, label 0: tensor(61), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.620854377746582 and after 0.7611414194107056 +num_clicks 50 points_length: 316 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0122, fp: 0.9538, label 0: tensor(95), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6096561551094055 and after 0.7585335969924927 +num_clicks 50 points_length: 339 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0123, fp: 0.9215, label 0: tensor(78), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6015790700912476 and after 0.7655302286148071 +num_clicks 50 points_length: 301 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0102, fp: 0.9388, label 0: tensor(114), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5760225057601929 and after 0.7715790271759033 +epoch: 6/20, iter: 32/42: loss:1.9282: rank:-1 +[23:26:42.065] epoch: 6/20, iter: 32/42: loss:1.9282: rank:-1 +num_clicks 50 points_length: 729 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07677782326936722 and after 0.3562125563621521 +num_clicks 50 points_length: 539 dynamic_size: 1 +filter out voxels: 12 +filter out voxels: 1 +First batch: fn: 0.0947, fp: 0.6447, label 0: tensor(88), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33856263756752014 and after 0.4029855728149414 +num_clicks 50 points_length: 357 dynamic_size: 17 +filter out voxels: 1 +filter out voxels: 0 +First batch: fn: 0.0809, fp: 0.4088, label 0: tensor(105), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34996017813682556 and after 0.42642825841903687 +num_clicks 50 points_length: 419 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0233, fp: 0.5514, label 0: tensor(105), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45085424184799194 and after 0.49813777208328247 +num_clicks 50 points_length: 214 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 10 +First batch: fn: 0.0480, fp: 0.2455, label 0: tensor(63), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.37740740180015564 and after 0.516604483127594 +num_clicks 50 points_length: 192 dynamic_size: 47 +filter out voxels: 2 +filter out voxels: 10 +First batch: fn: 0.0425, fp: 0.2209, label 0: tensor(80), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3882390558719635 and after 0.5416415929794312 +num_clicks 50 points_length: 177 dynamic_size: 2 +filter out voxels: 2 +filter out voxels: 7 +First batch: fn: 0.0590, fp: 0.1838, label 0: tensor(69), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4347459077835083 and after 0.5604817867279053 +num_clicks 50 points_length: 289 dynamic_size: 22 +filter out voxels: 2 +filter out voxels: 8 +First batch: fn: 0.0288, fp: 0.3676, label 0: tensor(106), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5239914655685425 and after 0.6093202233314514 +num_clicks 50 points_length: 183 dynamic_size: 35 +filter out voxels: 1 +filter out voxels: 6 +First batch: fn: 0.0412, fp: 0.2099, label 0: tensor(72), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.518932580947876 and after 0.6360208988189697 +num_clicks 50 points_length: 146 dynamic_size: 33 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.0425, fp: 0.1578, label 0: tensor(68), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5363901853561401 and after 0.6509504914283752 +num_clicks 50 points_length: 145 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.0343, fp: 0.1646, label 0: tensor(57), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5446457862854004 and after 0.6674864888191223 +epoch: 6/20, iter: 33/42: loss:2.7476: rank:-1 +[23:26:53.049] epoch: 6/20, iter: 33/42: loss:2.7476: rank:-1 +num_clicks 50 points_length: 10628 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(469) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6785139441490173 and after 0.6709598302841187 +num_clicks 50 points_length: 4832 dynamic_size: 30 +filter out voxels: 153 +filter out voxels: 47 +First batch: fn: 0.5513, fp: 0.0172, label 0: tensor(127), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7461786270141602 and after 0.7725560665130615 +num_clicks 50 points_length: 5799 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3349, fp: 0.0580, label 0: tensor(195), label 1: tensor(542) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7695579528808594 and after 0.7975521683692932 +num_clicks 50 points_length: 6127 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2214, fp: 0.1155, label 0: tensor(66), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7648136615753174 and after 0.8207032680511475 +num_clicks 50 points_length: 4618 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1439, fp: 0.2260, label 0: tensor(89), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7697498798370361 and after 0.8350896239280701 +num_clicks 50 points_length: 3672 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0623, fp: 0.3526, label 0: tensor(158), label 1: tensor(405) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8057880997657776 and after 0.8575939536094666 +num_clicks 50 points_length: 2499 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0127, fp: 0.4152, label 0: tensor(387), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8033711910247803 and after 0.8612183332443237 +num_clicks 50 points_length: 2492 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0093, fp: 0.3986, label 0: tensor(291), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8033411502838135 and after 0.8622341752052307 +num_clicks 50 points_length: 2501 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0056, fp: 0.3986, label 0: tensor(409), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8026313185691833 and after 0.8764201998710632 +num_clicks 50 points_length: 1996 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0026, fp: 0.3772, label 0: tensor(353), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.803467333316803 and after 0.8835535049438477 +num_clicks 50 points_length: 1823 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0035, fp: 0.3525, label 0: tensor(214), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8026201725006104 and after 0.8773034811019897 +epoch: 6/20, iter: 34/42: loss:1.4296: rank:-1 +[23:27:10.238] epoch: 6/20, iter: 34/42: loss:1.4296: rank:-1 +num_clicks 50 points_length: 13931 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4295556843280792 and after 0.5123022198677063 +num_clicks 50 points_length: 10091 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 7 +First batch: fn: 0.6022, fp: 0.0003, label 0: tensor(16), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7214381098747253 and after 0.7212722301483154 +num_clicks 50 points_length: 7253 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4796, fp: 0.0062, label 0: tensor(199), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7343083620071411 and after 0.7465794086456299 +num_clicks 50 points_length: 5646 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4847, fp: 0.0090, label 0: tensor(263), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7615274786949158 and after 0.7910237908363342 +num_clicks 50 points_length: 3372 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4586, fp: 0.0096, label 0: tensor(133), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7947434782981873 and after 0.8315798044204712 +num_clicks 50 points_length: 3113 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3703, fp: 0.0094, label 0: tensor(12), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8085739612579346 and after 0.84839928150177 +num_clicks 50 points_length: 3394 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3075, fp: 0.0201, label 0: tensor(109), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7959344983100891 and after 0.8648902177810669 +num_clicks 50 points_length: 2865 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2790, fp: 0.0253, label 0: tensor(74), label 1: tensor(514) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8055877089500427 and after 0.8829036951065063 +num_clicks 50 points_length: 2733 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2227, fp: 0.0364, label 0: tensor(55), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8143332004547119 and after 0.8932783603668213 +num_clicks 50 points_length: 2404 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1874, fp: 0.0589, label 0: tensor(43), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8208950757980347 and after 0.901313304901123 +num_clicks 50 points_length: 2330 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1504, fp: 0.0762, label 0: tensor(5), label 1: tensor(446) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.827130138874054 and after 0.9038271903991699 +epoch: 6/20, iter: 35/42: loss:1.6649: rank:-1 +[23:27:28.987] epoch: 6/20, iter: 35/42: loss:1.6649: rank:-1 +num_clicks 50 points_length: 19042 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6361398100852966 and after 0.5076242089271545 +num_clicks 50 points_length: 13857 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 3 +First batch: fn: 0.6235, fp: 0.0059, label 0: tensor(61), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7531253099441528 and after 0.7446974515914917 +num_clicks 50 points_length: 10278 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3176, fp: 0.0500, label 0: tensor(299), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7891271114349365 and after 0.8153810501098633 +num_clicks 50 points_length: 7143 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2791, fp: 0.0397, label 0: tensor(343), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8051303625106812 and after 0.8533610105514526 +num_clicks 50 points_length: 5320 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2389, fp: 0.0496, label 0: tensor(365), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8177482485771179 and after 0.8816002607345581 +num_clicks 50 points_length: 4314 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1685, fp: 0.0745, label 0: tensor(262), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8340614438056946 and after 0.9012709856033325 +num_clicks 50 points_length: 3808 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0845, fp: 0.1197, label 0: tensor(283), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8367125988006592 and after 0.9137146472930908 +num_clicks 50 points_length: 3492 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0297, fp: 0.1490, label 0: tensor(472), label 1: tensor(294) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8269042372703552 and after 0.922020673751831 +num_clicks 50 points_length: 3247 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0268, fp: 0.1278, label 0: tensor(419), label 1: tensor(211) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8278970718383789 and after 0.9247542023658752 +num_clicks 50 points_length: 3239 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0207, fp: 0.1244, label 0: tensor(504), label 1: tensor(201) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8260860443115234 and after 0.928003191947937 +num_clicks 50 points_length: 3189 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0184, fp: 0.1153, label 0: tensor(416), label 1: tensor(217) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8308746814727783 and after 0.9274617433547974 +epoch: 6/20, iter: 36/42: loss:1.6567: rank:-1 +[23:27:49.031] epoch: 6/20, iter: 36/42: loss:1.6567: rank:-1 +num_clicks 50 points_length: 1863 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4855496883392334 and after 0.477838397026062 +num_clicks 50 points_length: 1055 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3328, fp: 0.2335, label 0: tensor(128), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46222174167633057 and after 0.5532879829406738 +num_clicks 50 points_length: 1457 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0183, fp: 0.7638, label 0: tensor(239), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5835690498352051 and after 0.6592069864273071 +num_clicks 50 points_length: 825 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0483, fp: 0.3945, label 0: tensor(180), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5876551866531372 and after 0.7054846286773682 +num_clicks 50 points_length: 627 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0354, fp: 0.3011, label 0: tensor(204), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.589383602142334 and after 0.7368861436843872 +num_clicks 50 points_length: 461 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0397, fp: 0.2077, label 0: tensor(102), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5886920690536499 and after 0.7454147338867188 +num_clicks 50 points_length: 432 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0440, fp: 0.1879, label 0: tensor(102), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5842490196228027 and after 0.7469542026519775 +num_clicks 50 points_length: 456 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0403, fp: 0.2045, label 0: tensor(76), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5793758630752563 and after 0.7470709085464478 +num_clicks 50 points_length: 510 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0322, fp: 0.2415, label 0: tensor(95), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5738918781280518 and after 0.7462344169616699 +num_clicks 50 points_length: 598 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0247, fp: 0.2963, label 0: tensor(145), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.592949390411377 and after 0.7657755613327026 +num_clicks 50 points_length: 467 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0301, fp: 0.2206, label 0: tensor(106), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5963133573532104 and after 0.7758548259735107 +epoch: 6/20, iter: 37/42: loss:1.6536: rank:-1 +[23:28:01.237] epoch: 6/20, iter: 37/42: loss:1.6536: rank:-1 +num_clicks 50 points_length: 779 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2522490918636322 and after 0.4714759588241577 +num_clicks 50 points_length: 582 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 24 +First batch: fn: 0.4288, fp: 0.3184, label 0: tensor(64), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.25290447473526 and after 0.6221872568130493 +num_clicks 50 points_length: 565 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 72 +First batch: fn: 0.1605, fp: 0.5648, label 0: tensor(108), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.30145734548568726 and after 0.7105019688606262 +num_clicks 50 points_length: 461 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 108 +First batch: fn: 0.1361, fp: 0.4557, label 0: tensor(116), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27759507298469543 and after 0.7510219812393188 +num_clicks 50 points_length: 464 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 121 +First batch: fn: 0.0937, fp: 0.5019, label 0: tensor(115), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2646377980709076 and after 0.7371891140937805 +num_clicks 50 points_length: 396 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 108 +First batch: fn: 0.1130, fp: 0.3954, label 0: tensor(80), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3248102068901062 and after 0.7397518754005432 +num_clicks 50 points_length: 402 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 69 +First batch: fn: 0.1155, fp: 0.4005, label 0: tensor(54), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3148690462112427 and after 0.7543405294418335 +num_clicks 50 points_length: 370 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 67 +First batch: fn: 0.1232, fp: 0.3517, label 0: tensor(112), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3175857365131378 and after 0.770815908908844 +num_clicks 50 points_length: 305 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 54 +First batch: fn: 0.1733, fp: 0.2182, label 0: tensor(69), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3263876736164093 and after 0.7645026445388794 +num_clicks 50 points_length: 374 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 39 +First batch: fn: 0.1091, fp: 0.3710, label 0: tensor(91), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3301929533481598 and after 0.7810471057891846 +num_clicks 50 points_length: 321 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 25 +First batch: fn: 0.1322, fp: 0.2798, label 0: tensor(93), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3311149477958679 and after 0.7863513231277466 +epoch: 6/20, iter: 38/42: loss:2.6087: rank:-1 +[23:28:11.382] epoch: 6/20, iter: 38/42: loss:2.6087: rank:-1 +num_clicks 50 points_length: 15529 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7170277833938599 and after 0.5310006737709045 +num_clicks 50 points_length: 4851 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1875, fp: 0.1249, label 0: tensor(130), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6912147998809814 and after 0.6526093482971191 +num_clicks 50 points_length: 6064 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0118, fp: 0.3787, label 0: tensor(540), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.774370014667511 and after 0.7438845634460449 +num_clicks 50 points_length: 3520 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0277, fp: 0.1990, label 0: tensor(501), label 1: tensor(206) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7789865136146545 and after 0.7662471532821655 +num_clicks 50 points_length: 3477 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 16 +First batch: fn: 0.0130, fp: 0.2109, label 0: tensor(536), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8208465576171875 and after 0.81573486328125 +num_clicks 50 points_length: 2737 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 31 +First batch: fn: 0.0134, fp: 0.1629, label 0: tensor(470), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8399568796157837 and after 0.8468574285507202 +num_clicks 50 points_length: 2618 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 36 +First batch: fn: 0.0113, fp: 0.1573, label 0: tensor(437), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8488364219665527 and after 0.8702970743179321 +num_clicks 50 points_length: 2320 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 45 +First batch: fn: 0.0163, fp: 0.1331, label 0: tensor(435), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8472175598144531 and after 0.8837296962738037 +num_clicks 50 points_length: 2165 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 36 +First batch: fn: 0.0160, fp: 0.1234, label 0: tensor(423), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8464552164077759 and after 0.8957202434539795 +num_clicks 50 points_length: 2073 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 68 +First batch: fn: 0.0172, fp: 0.1163, label 0: tensor(488), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8492320775985718 and after 0.9070541262626648 +num_clicks 50 points_length: 1920 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 54 +First batch: fn: 0.0220, fp: 0.1017, label 0: tensor(368), label 1: tensor(183) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8516215085983276 and after 0.9086738228797913 +epoch: 6/20, iter: 39/42: loss:1.4839: rank:-1 +[23:28:31.198] epoch: 6/20, iter: 39/42: loss:1.4839: rank:-1 +num_clicks 50 points_length: 9489 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(310) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6251980066299438 and after 0.4572269320487976 +num_clicks 50 points_length: 5832 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5346, fp: 0.0800, label 0: tensor(118), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6515321731567383 and after 0.5773090720176697 +num_clicks 50 points_length: 5765 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1840, fp: 0.4235, label 0: tensor(413), label 1: tensor(253) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7026810646057129 and after 0.6174092292785645 +num_clicks 50 points_length: 5319 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1113, fp: 0.4493, label 0: tensor(385), label 1: tensor(232) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7118225693702698 and after 0.6569225788116455 +num_clicks 50 points_length: 4626 dynamic_size: 25 +filter out voxels: 90 +filter out voxels: 0 +First batch: fn: 0.0463, fp: 0.4412, label 0: tensor(496), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7287170886993408 and after 0.6858962774276733 +num_clicks 50 points_length: 3646 dynamic_size: 50 +filter out voxels: 98 +filter out voxels: 0 +First batch: fn: 0.0291, fp: 0.3551, label 0: tensor(507), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7468975782394409 and after 0.7093229293823242 +num_clicks 50 points_length: 3320 dynamic_size: 35 +filter out voxels: 91 +filter out voxels: 0 +First batch: fn: 0.0301, fp: 0.3197, label 0: tensor(530), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7437261343002319 and after 0.7240375280380249 +num_clicks 50 points_length: 2855 dynamic_size: 23 +filter out voxels: 69 +filter out voxels: 0 +First batch: fn: 0.0319, fp: 0.2689, label 0: tensor(411), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7764931917190552 and after 0.7649167776107788 +num_clicks 50 points_length: 2438 dynamic_size: 17 +filter out voxels: 48 +filter out voxels: 0 +First batch: fn: 0.0300, fp: 0.2269, label 0: tensor(410), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7778606414794922 and after 0.7734569907188416 +num_clicks 50 points_length: 2268 dynamic_size: 34 +filter out voxels: 25 +filter out voxels: 0 +First batch: fn: 0.0273, fp: 0.2117, label 0: tensor(465), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7656546831130981 and after 0.7770615816116333 +num_clicks 50 points_length: 1973 dynamic_size: 33 +filter out voxels: 18 +filter out voxels: 0 +First batch: fn: 0.0300, fp: 0.1779, label 0: tensor(356), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7802388668060303 and after 0.7997273206710815 +epoch: 6/20, iter: 40/42: loss:1.7981: rank:-1 +[23:28:50.244] epoch: 6/20, iter: 40/42: loss:1.7981: rank:-1 +num_clicks 50 points_length: 1353 dynamic_size: 11 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27136752009391785 and after 0.6498599648475647 +num_clicks 50 points_length: 750 dynamic_size: 19 +filter out voxels: 1 +First batch: fn: 0.4856, fp: 0.0687, label 0: tensor(30), label 1: tensor(177) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.42873433232307434 and after 0.693644642829895 +num_clicks 50 points_length: 1181 dynamic_size: 28 +filter out voxels: 0 +First batch: fn: 0.0118, fp: 0.8610, label 0: tensor(232), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7897519469261169 and after 0.7636780142784119 +num_clicks 50 points_length: 825 dynamic_size: 16 +filter out voxels: 0 +First batch: fn: 0.0148, fp: 0.5950, label 0: tensor(183), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7896230220794678 and after 0.8303203582763672 +num_clicks 50 points_length: 535 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0325, fp: 0.3629, label 0: tensor(115), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7094972133636475 and after 0.8598937392234802 +num_clicks 50 points_length: 422 dynamic_size: 35 +filter out voxels: 0 +First batch: fn: 0.0429, fp: 0.2690, label 0: tensor(118), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5971074104309082 and after 0.8718824982643127 +num_clicks 50 points_length: 375 dynamic_size: 34 +filter out voxels: 0 +First batch: fn: 0.0569, fp: 0.2203, label 0: tensor(102), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48322147130966187 and after 0.8805248737335205 +num_clicks 50 points_length: 346 dynamic_size: 31 +filter out voxels: 0 +First batch: fn: 0.0576, fp: 0.1981, label 0: tensor(100), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47640448808670044 and after 0.8795632719993591 +num_clicks 50 points_length: 353 dynamic_size: 27 +filter out voxels: 0 +First batch: fn: 0.0473, fp: 0.2136, label 0: tensor(141), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4478808641433716 and after 0.8890420198440552 +num_clicks 50 points_length: 322 dynamic_size: 47 +filter out voxels: 0 +First batch: fn: 0.0466, fp: 0.1914, label 0: tensor(87), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48491621017456055 and after 0.8922863006591797 +num_clicks 50 points_length: 310 dynamic_size: 25 +filter out voxels: 0 +First batch: fn: 0.0510, fp: 0.1781, label 0: tensor(81), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4567198157310486 and after 0.8947184085845947 +epoch: 6/20, iter: 41/42: loss:1.4183: rank:-1 +[23:28:55.489] epoch: 6/20, iter: 41/42: loss:1.4183: rank:-1 +current lr: 3.952480000000001e-05 +[23:28:55.490] - Train metrics: 2.4256337 +found empty patch +found empty patch +num_clicks 10 points_length: 2119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(183) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:28:59.254] dice before refine 0.0 and after 0.7023195624351501, label 0: tensor(0, device='cuda:0'), label 1: tensor(183, device='cuda:0') +num_clicks 10 points_length: 1386 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.2284, fp: 0.4257, label 0: tensor(252), label 1: tensor(169) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1026 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0892, fp: 0.3950, label 0: tensor(285), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 959 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0524, fp: 0.4002, label 0: tensor(177), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 924 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0330, fp: 0.4030, label 0: tensor(225), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 662 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0576, fp: 0.2548, label 0: tensor(153), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 805 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0420, fp: 0.3379, label 0: tensor(215), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 650 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0529, fp: 0.2539, label 0: tensor(174), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 559 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0632, fp: 0.2006, label 0: tensor(164), label 1: tensor(64) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 533 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0680, fp: 0.1836, label 0: tensor(164), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 519 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0670, fp: 0.1779, label 0: tensor(154), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:04.598] dice before refine 0.20547401905059814 and after 0.8824971914291382, label 0: tensor(154, device='cuda:0'), label 1: tensor(73, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4016 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(385) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:05.044] dice before refine 0.005217164289206266 and after 0.6374923586845398, label 0: tensor(0, device='cuda:0'), label 1: tensor(385, device='cuda:0') +num_clicks 10 points_length: 3562 dynamic_size: 10 +filter out voxels: 83 +First batch: fn: 0.2201, fp: 0.6668, label 0: tensor(508), label 1: tensor(246) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2143 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0981, fp: 0.4355, label 0: tensor(400), label 1: tensor(209) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1906 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0707, fp: 0.4039, label 0: tensor(398), label 1: tensor(138) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1501 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1036, fp: 0.2702, label 0: tensor(336), label 1: tensor(234) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1816 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0687, fp: 0.3835, label 0: tensor(422), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1208 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0961, fp: 0.2047, label 0: tensor(301), label 1: tensor(182) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1332 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0986, fp: 0.2331, label 0: tensor(329), label 1: tensor(183) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1418 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0685, fp: 0.2846, label 0: tensor(326), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1215 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0769, fp: 0.2256, label 0: tensor(274), label 1: tensor(181) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1166 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0710, fp: 0.2194, label 0: tensor(251), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:12.679] dice before refine 0.517228901386261 and after 0.8690697550773621, label 0: tensor(251, device='cuda:0'), label 1: tensor(137, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 343 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:13.046] dice before refine 0.03689449280500412 and after 0.26671943068504333, label 0: tensor(0, device='cuda:0'), label 1: tensor(47, device='cuda:0') +num_clicks 10 points_length: 1853 dynamic_size: 10 +filter out voxels: 1313 +First batch: fn: 0.0175, fp: 5.3848, label 0: tensor(86), label 1: tensor(7) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 248 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0029, fp: 0.7201, label 0: tensor(89), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 104 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0816, fp: 0.2216, label 0: tensor(41), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 99 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0962, fp: 0.1924, label 0: tensor(41), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 243 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0000, fp: 0.7085, label 0: tensor(106), label 1: tensor(0) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 160 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0233, fp: 0.4431, label 0: tensor(58), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 101 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0525, fp: 0.2420, label 0: tensor(49), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 92 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0408, fp: 0.2274, label 0: tensor(51), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 101 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0350, fp: 0.2595, label 0: tensor(31), label 1: tensor(11) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 89 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0321, fp: 0.2274, label 0: tensor(63), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:16.426] dice before refine 0.7504078149795532 and after 0.8811749219894409, label 0: tensor(63, device='cuda:0'), label 1: tensor(10, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 2248 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(217) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:16.847] dice before refine 0.036761440336704254 and after 0.4323313236236572, label 0: tensor(0, device='cuda:0'), label 1: tensor(217, device='cuda:0') +num_clicks 10 points_length: 4249 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2802, fp: 1.6099, label 0: tensor(313), label 1: tensor(139) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1159 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1713, fp: 0.3443, label 0: tensor(181), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1210 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1143, fp: 0.4239, label 0: tensor(317), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 873 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1504, fp: 0.2380, label 0: tensor(188), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 974 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1099, fp: 0.3234, label 0: tensor(193), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 830 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1148, fp: 0.2544, label 0: tensor(137), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 752 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1019, fp: 0.2327, label 0: tensor(129), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 714 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0903, fp: 0.2273, label 0: tensor(142), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 693 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0894, fp: 0.2189, label 0: tensor(185), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 714 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0903, fp: 0.2273, label 0: tensor(152), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:22.175] dice before refine 0.5683581829071045 and after 0.8559481501579285, label 0: tensor(152, device='cuda:0'), label 1: tensor(81, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3675 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(301) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:22.597] dice before refine 0.02557544782757759 and after 0.6538415551185608, label 0: tensor(0, device='cuda:0'), label 1: tensor(301, device='cuda:0') +num_clicks 10 points_length: 2897 dynamic_size: 10 +filter out voxels: 117 +First batch: fn: 0.2555, fp: 0.5328, label 0: tensor(393), label 1: tensor(197) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1652 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1401, fp: 0.3094, label 0: tensor(241), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1534 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1001, fp: 0.3173, label 0: tensor(345), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1433 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1045, fp: 0.2854, label 0: tensor(253), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1144 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1001, fp: 0.2112, label 0: tensor(228), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1248 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0789, fp: 0.2607, label 0: tensor(305), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1120 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0770, fp: 0.2278, label 0: tensor(307), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1057 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0778, fp: 0.2098, label 0: tensor(174), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1067 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0789, fp: 0.2114, label 0: tensor(235), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1131 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0718, fp: 0.2359, label 0: tensor(288), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:28.949] dice before refine 0.5311284065246582 and after 0.8664733171463013, label 0: tensor(288, device='cuda:0'), label 1: tensor(135, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.8123877752910961 +[23:29:29.475] epoch: 6/20, iter: 0/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-120/image.nii.gz',) mean dice over clicks:0.8123877752910961 stich left and right side (total size): 1 +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:29.997] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(117, device='cuda:0') +num_clicks 10 points_length: 3344 dynamic_size: 10 +filter out voxels: 74 +First batch: fn: 1.0000, fp: 0.0650, label 0: tensor(30), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3084 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9771, fp: 0.0051, label 0: tensor(8), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1964 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.4962, fp: 0.1293, label 0: tensor(74), label 1: tensor(326) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2865 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0777, fp: 0.8347, label 0: tensor(394), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1071 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0831, fp: 0.2580, label 0: tensor(125), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 854 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0876, fp: 0.1844, label 0: tensor(140), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 761 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0739, fp: 0.1685, label 0: tensor(175), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 680 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0691, fp: 0.1475, label 0: tensor(147), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 693 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0611, fp: 0.1596, label 0: tensor(127), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 773 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0535, fp: 0.1927, label 0: tensor(165), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:34.630] dice before refine 0.0 and after 0.8952728509902954, label 0: tensor(165, device='cuda:0'), label 1: tensor(56, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:35.004] dice before refine 0.06981561332941055 and after 0.32457858324050903, label 0: tensor(0, device='cuda:0'), label 1: tensor(133, device='cuda:0') +num_clicks 10 points_length: 3446 dynamic_size: 10 +filter out voxels: 184 +First batch: fn: 0.7363, fp: 0.3611, label 0: tensor(193), label 1: tensor(437) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2047 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.1363, fp: 0.5156, label 0: tensor(295), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1375 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0685, fp: 0.3694, label 0: tensor(237), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1091 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0589, fp: 0.2885, label 0: tensor(197), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 959 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0404, fp: 0.2650, label 0: tensor(226), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 836 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0414, fp: 0.2248, label 0: tensor(223), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 794 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0360, fp: 0.2169, label 0: tensor(110), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 781 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0350, fp: 0.2137, label 0: tensor(149), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 767 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0363, fp: 0.2080, label 0: tensor(152), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 741 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0363, fp: 0.1997, label 0: tensor(100), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:40.169] dice before refine 0.16776315867900848 and after 0.8920035362243652, label 0: tensor(100, device='cuda:0'), label 1: tensor(38, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:40.563] dice before refine 0.0 and after 0.05820853263139725, label 0: tensor(0, device='cuda:0'), label 1: tensor(118, device='cuda:0') +num_clicks 10 points_length: 3333 dynamic_size: 10 +filter out voxels: 189 +First batch: fn: 0.9672, fp: 0.0943, label 0: tensor(37), label 1: tensor(380) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2473 dynamic_size: 10 +filter out voxels: 296 +First batch: fn: 0.2191, fp: 0.5685, label 0: tensor(288), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1248 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1780, fp: 0.2194, label 0: tensor(151), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1202 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1111, fp: 0.2717, label 0: tensor(162), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1013 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0901, fp: 0.2325, label 0: tensor(154), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 879 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0885, fp: 0.1914, label 0: tensor(121), label 1: tensor(76) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 879 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0678, fp: 0.2121, label 0: tensor(113), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 792 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0631, fp: 0.1892, label 0: tensor(190), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 653 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0691, fp: 0.1389, label 0: tensor(112), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 747 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0455, fp: 0.1924, label 0: tensor(136), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:45.315] dice before refine 0.0 and after 0.900136411190033, label 0: tensor(136, device='cuda:0'), label 1: tensor(37, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:45.687] dice before refine 0.05947849154472351 and after 0.28011709451675415, label 0: tensor(0, device='cuda:0'), label 1: tensor(114, device='cuda:0') +num_clicks 10 points_length: 3197 dynamic_size: 10 +filter out voxels: 363 +First batch: fn: 0.8019, fp: 0.2162, label 0: tensor(103), label 1: tensor(267) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1785 dynamic_size: 10 +filter out voxels: 46 +First batch: fn: 0.2949, fp: 0.2736, label 0: tensor(201), label 1: tensor(237) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1411 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0634, fp: 0.3860, label 0: tensor(225), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1154 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0376, fp: 0.3299, label 0: tensor(277), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 868 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0338, fp: 0.2427, label 0: tensor(138), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 799 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0395, fp: 0.2150, label 0: tensor(144), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 714 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0328, fp: 0.1946, label 0: tensor(128), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 729 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0258, fp: 0.2064, label 0: tensor(186), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 679 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0303, fp: 0.1860, label 0: tensor(158), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 627 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0328, fp: 0.1669, label 0: tensor(114), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:50.506] dice before refine 0.3906327784061432 and after 0.9080920815467834, label 0: tensor(114, device='cuda:0'), label 1: tensor(51, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +0.8070553649555553 +[23:29:51.814] epoch: 6/20, iter: 1/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-55/image.nii.gz',) mean dice over clicks:0.8070553649555553 stich left and right side (total size): 1 +num_clicks 10 points_length: 23364 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:52.344] dice before refine 0.0 and after 0.23718713223934174, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 20480 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.8637, fp: 0.0128, label 0: tensor(57), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15027 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.6097, fp: 0.0334, label 0: tensor(153), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10916 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.4238, fp: 0.0434, label 0: tensor(237), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8271 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.3049, fp: 0.0491, label 0: tensor(319), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6070 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.2015, fp: 0.0583, label 0: tensor(303), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4125 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.1194, fp: 0.0572, label 0: tensor(248), label 1: tensor(387) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3389 dynamic_size: 10 +filter out voxels: 54 +First batch: fn: 0.0746, fp: 0.0704, label 0: tensor(308), label 1: tensor(212) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3235 dynamic_size: 10 +filter out voxels: 39 +First batch: fn: 0.0867, fp: 0.0517, label 0: tensor(239), label 1: tensor(243) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3064 dynamic_size: 10 +filter out voxels: 44 +First batch: fn: 0.0642, fp: 0.0669, label 0: tensor(419), label 1: tensor(245) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2939 dynamic_size: 10 +filter out voxels: 41 +First batch: fn: 0.0695, fp: 0.0563, label 0: tensor(194), label 1: tensor(129) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:29:59.971] dice before refine 0.6421627998352051 and after 0.9400132894515991, label 0: tensor(194, device='cuda:0'), label 1: tensor(129, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 88105 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:00.536] dice before refine 0.39632391929626465 and after 0.2023351788520813, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 78223 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8874, fp: 0.0004, label 0: tensor(29), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 57920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6524, fp: 0.0050, label 0: tensor(144), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 49913 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5627, fp: 0.0038, label 0: tensor(122), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44734 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.4986, fp: 0.0091, label 0: tensor(219), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42185 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.4689, fp: 0.0099, label 0: tensor(252), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39089 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.4359, fp: 0.0077, label 0: tensor(276), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33017 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.3656, fp: 0.0092, label 0: tensor(296), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29796 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.3271, fp: 0.0111, label 0: tensor(337), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26584 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.2880, fp: 0.0137, label 0: tensor(457), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25888 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.2789, fp: 0.0150, label 0: tensor(465), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:09.660] dice before refine 0.7374244928359985 and after 0.8597431182861328, label 0: tensor(465, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 204709 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:10.340] dice before refine 0.11468375474214554 and after 0.09175398200750351, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 194866 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9519, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 172647 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8433, fp: 0.0001, label 0: tensor(12), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 160757 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7852, fp: 0.0001, label 0: tensor(20), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 157511 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7693, fp: 0.0001, label 0: tensor(22), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 146547 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7158, fp: 0.0001, label 0: tensor(12), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 132393 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6464, fp: 0.0004, label 0: tensor(44), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 125361 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6121, fp: 0.0003, label 0: tensor(49), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 120804 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5900, fp: 0.0002, label 0: tensor(28), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 111983 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5467, fp: 0.0003, label 0: tensor(48), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 105796 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5163, fp: 0.0005, label 0: tensor(64), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:18.669] dice before refine 0.5313097238540649 and after 0.6683768630027771, label 0: tensor(64, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 347521 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:19.514] dice before refine 0.22945158183574677 and after 0.06343633681535721, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 336143 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9672, fp: 0.0000, label 0: tensor(3), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 311430 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8959, fp: 0.0002, label 0: tensor(48), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 304105 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8745, fp: 0.0005, label 0: tensor(65), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 299144 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8605, fp: 0.0003, label 0: tensor(42), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 293733 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8449, fp: 0.0004, label 0: tensor(71), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 286101 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8231, fp: 0.0002, label 0: tensor(38), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 277441 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7982, fp: 0.0001, label 0: tensor(34), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 268318 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7713, fp: 0.0008, label 0: tensor(131), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 272481 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7835, fp: 0.0006, label 0: tensor(104), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 264430 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7602, fp: 0.0007, label 0: tensor(107), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:29.772] dice before refine 0.4300764501094818 and after 0.41056105494499207, label 0: tensor(107, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25099 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:30.228] dice before refine 0.10694866627454758 and after 0.2249240130186081, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 22440 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.8703, fp: 0.0238, label 0: tensor(204), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20217 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.7493, fp: 0.0562, label 0: tensor(437), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17958 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.6835, fp: 0.0320, label 0: tensor(226), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12429 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.4458, fp: 0.0494, label 0: tensor(266), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8487 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.2808, fp: 0.0573, label 0: tensor(379), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5395 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.1689, fp: 0.0461, label 0: tensor(287), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4577 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.0988, fp: 0.0835, label 0: tensor(444), label 1: tensor(432) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3939 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.0735, fp: 0.0834, label 0: tensor(403), label 1: tensor(325) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3603 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.0549, fp: 0.0886, label 0: tensor(439), label 1: tensor(211) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3490 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.0579, fp: 0.0811, label 0: tensor(392), label 1: tensor(196) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:38.871] dice before refine 0.727120041847229 and after 0.9321016669273376, label 0: tensor(392, device='cuda:0'), label 1: tensor(196, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 82461 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:39.452] dice before refine 0.16060085594654083 and after 0.09079024940729141, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 78593 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9524, fp: 0.0007, label 0: tensor(24), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 65518 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7930, fp: 0.0015, label 0: tensor(46), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 53990 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6490, fp: 0.0057, label 0: tensor(209), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 51977 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6271, fp: 0.0033, label 0: tensor(153), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44127 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5263, fp: 0.0088, label 0: tensor(226), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39376 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4690, fp: 0.0085, label 0: tensor(246), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32987 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.3912, fp: 0.0089, label 0: tensor(258), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 27950 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.3249, fp: 0.0141, label 0: tensor(391), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25717 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.3003, fp: 0.0116, label 0: tensor(410), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 23655 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.2715, fp: 0.0153, label 0: tensor(406), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:48.509] dice before refine 0.8141247034072876 and after 0.8506736159324646, label 0: tensor(406, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 308412 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:49.282] dice before refine 0.3794203996658325 and after 0.1292005181312561, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 287147 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9309, fp: 0.0001, label 0: tensor(9), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 258600 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8381, fp: 0.0004, label 0: tensor(53), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 248471 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8044, fp: 0.0012, label 0: tensor(171), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 248713 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8055, fp: 0.0009, label 0: tensor(123), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 243282 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7879, fp: 0.0010, label 0: tensor(139), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 239161 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7731, fp: 0.0023, label 0: tensor(246), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 239634 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7752, fp: 0.0018, label 0: tensor(243), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 241157 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7810, fp: 0.0010, label 0: tensor(137), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 238382 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7720, fp: 0.0009, label 0: tensor(120), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 231715 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7505, fp: 0.0008, label 0: tensor(115), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:30:59.872] dice before refine 0.4205636978149414 and after 0.4297387897968292, label 0: tensor(115, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 355661 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:00.702] dice before refine 0.23272961378097534 and after 0.05012864992022514, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 346647 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9743, fp: 0.0004, label 0: tensor(28), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 327573 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9202, fp: 0.0008, label 0: tensor(124), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 317003 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8907, fp: 0.0006, label 0: tensor(82), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 308804 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8670, fp: 0.0013, label 0: tensor(88), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 305859 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8579, fp: 0.0020, label 0: tensor(240), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 310174 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8712, fp: 0.0009, label 0: tensor(139), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 306025 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8597, fp: 0.0007, label 0: tensor(86), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 296594 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8329, fp: 0.0011, label 0: tensor(177), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 298494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8386, fp: 0.0006, label 0: tensor(120), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 295888 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8314, fp: 0.0006, label 0: tensor(95), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:11.582] dice before refine 0.34846240282058716 and after 0.3085865080356598, label 0: tensor(95, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.30866698040203616 +[23:31:12.293] epoch: 6/20, iter: 2/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-100/image.nii.gz',) mean dice over clicks:0.30866698040203616 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:12.811] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 48 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8788, fp: 0.5758, label 0: tensor(8), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9394, fp: 0.0303, label 0: tensor(2), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8485, fp: 0.1212, label 0: tensor(6), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7879, fp: 0.2424, label 0: tensor(5), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7273, fp: 0.3333, label 0: tensor(9), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8485, fp: 0.0606, label 0: tensor(2), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6364, fp: 0.5455, label 0: tensor(14), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:15.728] dice before refine 0.0 and after 0.0, label 0: tensor(14, device='cuda:0'), label 1: tensor(16, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:16.108] dice before refine 0.0 and after 0.0, label 0: tensor(0, device='cuda:0'), label 1: tensor(10, device='cuda:0') +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 34 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.9394, fp: 0.0909, label 0: tensor(3), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 33 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 37 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7879, fp: 0.3333, label 0: tensor(6), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8182, fp: 0.0909, label 0: tensor(5), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7879, fp: 0.1515, label 0: tensor(5), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 31 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8182, fp: 0.1212, label 0: tensor(6), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 30 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8182, fp: 0.0909, label 0: tensor(3), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:19.024] dice before refine 0.0 and after 0.37037035822868347, label 0: tensor(3, device='cuda:0'), label 1: tensor(16, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.17379571226510135 +[23:31:19.418] epoch: 6/20, iter: 3/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-83/image.nii.gz',) mean dice over clicks:0.17379571226510135 stich left and right side (total size): 1 +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:19.881] dice before refine 0.0 and after 0.600375235080719, label 0: tensor(0, device='cuda:0'), label 1: tensor(142, device='cuda:0') +num_clicks 10 points_length: 852 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.5442, fp: 0.0627, label 0: tensor(29), label 1: tensor(160) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1032 dynamic_size: 10 +filter out voxels: 88 +First batch: fn: 0.0548, fp: 0.6802, label 0: tensor(140), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 636 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.1182, fp: 0.3348, label 0: tensor(89), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 533 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.1054, fp: 0.2742, label 0: tensor(84), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 504 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.0919, fp: 0.2671, label 0: tensor(105), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 429 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.1011, fp: 0.2044, label 0: tensor(71), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 417 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.1033, fp: 0.1937, label 0: tensor(64), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 423 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.0883, fp: 0.2130, label 0: tensor(64), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 421 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.0905, fp: 0.2094, label 0: tensor(74), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 420 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.0869, fp: 0.2123, label 0: tensor(92), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:23.788] dice before refine 0.2848447859287262 and after 0.8601855039596558, label 0: tensor(92, device='cuda:0'), label 1: tensor(34, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4392 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:24.210] dice before refine 0.0 and after 0.8097983002662659, label 0: tensor(0, device='cuda:0'), label 1: tensor(519, device='cuda:0') +num_clicks 10 points_length: 1716 dynamic_size: 10 +filter out voxels: 68 +First batch: fn: 0.1683, fp: 0.2224, label 0: tensor(231), label 1: tensor(164) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1581 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0626, fp: 0.2974, label 0: tensor(299), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1395 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.0679, fp: 0.2498, label 0: tensor(217), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1222 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.0490, fp: 0.2293, label 0: tensor(220), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1090 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.0567, fp: 0.1915, label 0: tensor(220), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 948 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.0669, fp: 0.1489, label 0: tensor(214), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 896 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.0656, fp: 0.1384, label 0: tensor(214), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 893 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.0663, fp: 0.1371, label 0: tensor(179), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 858 dynamic_size: 10 +filter out voxels: 33 +First batch: fn: 0.0531, fp: 0.1423, label 0: tensor(180), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 828 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.0569, fp: 0.1316, label 0: tensor(117), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:29.708] dice before refine 0.5132450461387634 and after 0.9081069231033325, label 0: tensor(117, device='cuda:0'), label 1: tensor(77, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1404 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(173) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:30.082] dice before refine 0.0 and after 0.7585681676864624, label 0: tensor(0, device='cuda:0'), label 1: tensor(173, device='cuda:0') +num_clicks 10 points_length: 634 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.2906, fp: 0.1610, label 0: tensor(62), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 602 dynamic_size: 10 +filter out voxels: 32 +First batch: fn: 0.1346, fp: 0.2942, label 0: tensor(84), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 542 dynamic_size: 10 +filter out voxels: 46 +First batch: fn: 0.0670, fp: 0.3191, label 0: tensor(103), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 437 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.1033, fp: 0.2080, label 0: tensor(81), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 450 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.0783, fp: 0.2422, label 0: tensor(96), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 399 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.0976, fp: 0.1866, label 0: tensor(52), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 411 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.0634, fp: 0.2293, label 0: tensor(76), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 391 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.0798, fp: 0.1987, label 0: tensor(74), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 400 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.0605, fp: 0.2244, label 0: tensor(73), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 379 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.0655, fp: 0.2044, label 0: tensor(76), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:33.870] dice before refine 0.2769981622695923 and after 0.8741722106933594, label 0: tensor(76, device='cuda:0'), label 1: tensor(43, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 4409 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:34.287] dice before refine 0.0 and after 0.7284697890281677, label 0: tensor(0, device='cuda:0'), label 1: tensor(530, device='cuda:0') +num_clicks 10 points_length: 2557 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.2220, fp: 0.3579, label 0: tensor(345), label 1: tensor(162) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1835 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0626, fp: 0.3536, label 0: tensor(438), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1230 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0479, fp: 0.2311, label 0: tensor(238), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1179 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0399, fp: 0.2275, label 0: tensor(210), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1112 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0413, fp: 0.2109, label 0: tensor(185), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1110 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0413, fp: 0.2105, label 0: tensor(237), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1007 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0426, fp: 0.1858, label 0: tensor(268), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 979 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.0479, fp: 0.1742, label 0: tensor(194), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 989 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0463, fp: 0.1780, label 0: tensor(212), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 969 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0463, fp: 0.1735, label 0: tensor(219), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:39.979] dice before refine 0.5743444561958313 and after 0.8975609540939331, label 0: tensor(219, device='cuda:0'), label 1: tensor(79, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(326) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:40.364] dice before refine 0.0 and after 0.6632105708122253, label 0: tensor(0, device='cuda:0'), label 1: tensor(326, device='cuda:0') +num_clicks 10 points_length: 1884 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.2821, fp: 0.4470, label 0: tensor(217), label 1: tensor(199) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1518 dynamic_size: 10 +filter out voxels: 111 +First batch: fn: 0.0360, fp: 0.5515, label 0: tensor(295), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1049 dynamic_size: 10 +filter out voxels: 60 +First batch: fn: 0.0635, fp: 0.3425, label 0: tensor(139), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 947 dynamic_size: 10 +filter out voxels: 44 +First batch: fn: 0.0546, fp: 0.3119, label 0: tensor(124), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 881 dynamic_size: 10 +filter out voxels: 46 +First batch: fn: 0.0468, fp: 0.2941, label 0: tensor(137), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 825 dynamic_size: 10 +filter out voxels: 41 +First batch: fn: 0.0476, fp: 0.2717, label 0: tensor(97), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 805 dynamic_size: 10 +filter out voxels: 45 +First batch: fn: 0.0426, fp: 0.2690, label 0: tensor(157), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 807 dynamic_size: 10 +filter out voxels: 52 +First batch: fn: 0.0337, fp: 0.2786, label 0: tensor(85), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 784 dynamic_size: 10 +filter out voxels: 44 +First batch: fn: 0.0368, fp: 0.2666, label 0: tensor(86), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 771 dynamic_size: 10 +filter out voxels: 49 +First batch: fn: 0.0341, fp: 0.2643, label 0: tensor(115), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:44.907] dice before refine 0.6452915668487549 and after 0.8684993982315063, label 0: tensor(115, device='cuda:0'), label 1: tensor(31, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8531 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:45.339] dice before refine 0.4499092698097229 and after 0.6915497779846191, label 0: tensor(0, device='cuda:0'), label 1: tensor(508, device='cuda:0') +num_clicks 10 points_length: 4727 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3789, fp: 0.1752, label 0: tensor(281), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3580 dynamic_size: 10 +filter out voxels: 201 +First batch: fn: 0.0203, fp: 0.3994, label 0: tensor(483), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2587 dynamic_size: 10 +filter out voxels: 174 +First batch: fn: 0.0227, fp: 0.2805, label 0: tensor(424), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2127 dynamic_size: 10 +filter out voxels: 153 +First batch: fn: 0.0186, fp: 0.2307, label 0: tensor(287), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1757 dynamic_size: 10 +filter out voxels: 126 +First batch: fn: 0.0232, fp: 0.1827, label 0: tensor(201), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1756 dynamic_size: 10 +filter out voxels: 129 +First batch: fn: 0.0185, fp: 0.1873, label 0: tensor(311), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1536 dynamic_size: 10 +filter out voxels: 123 +First batch: fn: 0.0293, fp: 0.1507, label 0: tensor(259), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1525 dynamic_size: 10 +filter out voxels: 113 +First batch: fn: 0.0196, fp: 0.1592, label 0: tensor(194), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1506 dynamic_size: 10 +filter out voxels: 110 +First batch: fn: 0.0182, fp: 0.1584, label 0: tensor(259), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1427 dynamic_size: 10 +filter out voxels: 111 +First batch: fn: 0.0247, fp: 0.1425, label 0: tensor(263), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:51.800] dice before refine 0.838551938533783 and after 0.9230939745903015, label 0: tensor(263, device='cuda:0'), label 1: tensor(96, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2584 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(428) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:52.193] dice before refine 0.0 and after 0.7349497079849243, label 0: tensor(0, device='cuda:0'), label 1: tensor(428, device='cuda:0') +num_clicks 10 points_length: 1607 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.1378, fp: 0.4841, label 0: tensor(250), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1187 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.0956, fp: 0.3638, label 0: tensor(186), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 915 dynamic_size: 10 +filter out voxels: 32 +First batch: fn: 0.0840, fp: 0.2701, label 0: tensor(103), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 865 dynamic_size: 10 +filter out voxels: 34 +First batch: fn: 0.0778, fp: 0.2570, label 0: tensor(133), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 839 dynamic_size: 10 +filter out voxels: 36 +First batch: fn: 0.0685, fp: 0.2562, label 0: tensor(109), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 842 dynamic_size: 10 +filter out voxels: 41 +First batch: fn: 0.0484, fp: 0.2775, label 0: tensor(152), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 795 dynamic_size: 10 +filter out voxels: 34 +First batch: fn: 0.0515, fp: 0.2562, label 0: tensor(84), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 794 dynamic_size: 10 +filter out voxels: 44 +First batch: fn: 0.0379, fp: 0.2693, label 0: tensor(72), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 773 dynamic_size: 10 +filter out voxels: 44 +First batch: fn: 0.0375, fp: 0.2616, label 0: tensor(88), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 765 dynamic_size: 10 +filter out voxels: 44 +First batch: fn: 0.0414, fp: 0.2546, label 0: tensor(114), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:56.590] dice before refine 0.7051137685775757 and after 0.8703573942184448, label 0: tensor(114, device='cuda:0'), label 1: tensor(55, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 8548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:31:57.015] dice before refine 0.49020469188690186 and after 0.6201410889625549, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 5492 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4755, fp: 0.1669, label 0: tensor(226), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3408 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0524, fp: 0.3463, label 0: tensor(373), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2589 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0552, fp: 0.2477, label 0: tensor(503), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2236 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0387, fp: 0.2229, label 0: tensor(361), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1976 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0271, fp: 0.2040, label 0: tensor(378), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1785 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0273, fp: 0.1816, label 0: tensor(233), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1659 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0282, fp: 0.1659, label 0: tensor(248), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1668 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0215, fp: 0.1736, label 0: tensor(217), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1588 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0216, fp: 0.1641, label 0: tensor(257), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1480 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0299, fp: 0.1432, label 0: tensor(274), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:03.729] dice before refine 0.8584835529327393 and after 0.9185994863510132, label 0: tensor(274, device='cuda:0'), label 1: tensor(101, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +0.8687470609491522 +[23:32:04.473] epoch: 6/20, iter: 4/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-2/image.nii.gz',) mean dice over clicks:0.8687470609491522 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:04.977] dice before refine 0.0 and after 0.6018783450126648, label 0: tensor(0, device='cuda:0'), label 1: tensor(132, device='cuda:0') +num_clicks 10 points_length: 975 dynamic_size: 10 +filter out voxels: 191 +First batch: fn: 0.4052, fp: 0.3818, label 0: tensor(72), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 678 dynamic_size: 10 +filter out voxels: 20 +First batch: fn: 0.2550, fp: 0.2922, label 0: tensor(72), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 609 dynamic_size: 10 +filter out voxels: 53 +First batch: fn: 0.1195, fp: 0.3721, label 0: tensor(56), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 611 dynamic_size: 10 +filter out voxels: 70 +First batch: fn: 0.0775, fp: 0.4157, label 0: tensor(103), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 513 dynamic_size: 10 +filter out voxels: 55 +First batch: fn: 0.1090, fp: 0.3051, label 0: tensor(38), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 570 dynamic_size: 10 +filter out voxels: 87 +First batch: fn: 0.0621, fp: 0.3979, label 0: tensor(106), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 461 dynamic_size: 10 +filter out voxels: 67 +First batch: fn: 0.0702, fp: 0.3019, label 0: tensor(35), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 433 dynamic_size: 10 +filter out voxels: 59 +First batch: fn: 0.0904, fp: 0.2591, label 0: tensor(92), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 408 dynamic_size: 10 +filter out voxels: 57 +First batch: fn: 0.1267, fp: 0.2026, label 0: tensor(27), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 514 dynamic_size: 10 +filter out voxels: 105 +First batch: fn: 0.0379, fp: 0.3769, label 0: tensor(102), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:08.591] dice before refine 0.0 and after 0.8489919900894165, label 0: tensor(102, device='cuda:0'), label 1: tensor(19, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 5457 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:09.013] dice before refine 0.0 and after 0.714106023311615, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 3182 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.2718, fp: 0.3113, label 0: tensor(384), label 1: tensor(282) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3644 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1004, fp: 0.5673, label 0: tensor(507), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4221 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.0629, fp: 0.7106, label 0: tensor(510), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3475 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.0478, fp: 0.5890, label 0: tensor(510), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2733 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.0432, fp: 0.4576, label 0: tensor(540), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1854 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.0671, fp: 0.2727, label 0: tensor(373), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1994 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0575, fp: 0.3079, label 0: tensor(387), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2182 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.0467, fp: 0.3531, label 0: tensor(392), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1826 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0522, fp: 0.2824, label 0: tensor(324), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2124 dynamic_size: 10 +filter out voxels: 8 +First batch: fn: 0.0429, fp: 0.3463, label 0: tensor(355), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:16.091] dice before refine 0.48288974165916443 and after 0.8517851233482361, label 0: tensor(355, device='cuda:0'), label 1: tensor(62, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 1239 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:16.539] dice before refine 0.0 and after 0.4883720874786377, label 0: tensor(0, device='cuda:0'), label 1: tensor(100, device='cuda:0') +num_clicks 10 points_length: 1100 dynamic_size: 10 +filter out voxels: 144 +First batch: fn: 0.5763, fp: 0.3115, label 0: tensor(61), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 764 dynamic_size: 10 +filter out voxels: 86 +First batch: fn: 0.1695, fp: 0.4471, label 0: tensor(76), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 514 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.1961, fp: 0.2187, label 0: tensor(77), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 443 dynamic_size: 10 +filter out voxels: 45 +First batch: fn: 0.1356, fp: 0.2220, label 0: tensor(68), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 484 dynamic_size: 10 +filter out voxels: 65 +First batch: fn: 0.0993, fp: 0.2914, label 0: tensor(78), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 458 dynamic_size: 10 +filter out voxels: 66 +First batch: fn: 0.0993, fp: 0.2704, label 0: tensor(61), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 419 dynamic_size: 10 +filter out voxels: 61 +First batch: fn: 0.0985, fp: 0.2397, label 0: tensor(26), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 655 dynamic_size: 10 +filter out voxels: 137 +First batch: fn: 0.0420, fp: 0.4867, label 0: tensor(88), label 1: tensor(6) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 444 dynamic_size: 10 +filter out voxels: 71 +First batch: fn: 0.0726, fp: 0.2857, label 0: tensor(54), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 450 dynamic_size: 10 +filter out voxels: 81 +First batch: fn: 0.0597, fp: 0.3035, label 0: tensor(59), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:20.165] dice before refine 0.0 and after 0.8461819291114807, label 0: tensor(59, device='cuda:0'), label 1: tensor(30, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 31898 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:20.646] dice before refine 0.6416371464729309 and after 0.6184749007225037, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 17987 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.5429, fp: 0.0209, label 0: tensor(129), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11420 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2963, fp: 0.0617, label 0: tensor(370), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10566 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2027, fp: 0.1286, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8064 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1198, fp: 0.1330, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7454 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0433, fp: 0.1904, label 0: tensor(508), label 1: tensor(356) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7906 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0140, fp: 0.2339, label 0: tensor(509), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7141 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0134, fp: 0.2104, label 0: tensor(509), label 1: tensor(118) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7049 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0084, fp: 0.2126, label 0: tensor(510), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6826 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0070, fp: 0.2070, label 0: tensor(510), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6223 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0074, fp: 0.1877, label 0: tensor(510), label 1: tensor(130) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:29.472] dice before refine 0.7603178024291992 and after 0.9116299152374268, label 0: tensor(510, device='cuda:0'), label 1: tensor(130, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +found empty patch +0.8557750907811251 +[23:32:30.390] epoch: 6/20, iter: 5/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-52/image.nii.gz',) mean dice over clicks:0.8557750907811251 stich left and right side (total size): 1 +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:30.817] dice before refine 0.0 and after 0.44078946113586426, label 0: tensor(0, device='cuda:0'), label 1: tensor(51, device='cuda:0') +num_clicks 10 points_length: 510 dynamic_size: 10 +filter out voxels: 137 +First batch: fn: 0.5931, fp: 0.4393, label 0: tensor(19), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 377 dynamic_size: 10 +filter out voxels: 137 +First batch: fn: 0.1599, fp: 0.6032, label 0: tensor(64), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 211 dynamic_size: 10 +filter out voxels: 9 +First batch: fn: 0.2976, fp: 0.1296, label 0: tensor(27), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 265 dynamic_size: 10 +filter out voxels: 54 +First batch: fn: 0.1377, fp: 0.3988, label 0: tensor(44), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 186 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.1883, fp: 0.1883, label 0: tensor(42), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 192 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.1599, fp: 0.2287, label 0: tensor(50), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 182 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.1721, fp: 0.1964, label 0: tensor(52), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 182 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.1761, fp: 0.1923, label 0: tensor(34), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 184 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.1336, fp: 0.2389, label 0: tensor(44), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 177 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.1498, fp: 0.2085, label 0: tensor(50), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:34.202] dice before refine 0.0 and after 0.8257426023483276, label 0: tensor(50, device='cuda:0'), label 1: tensor(17, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 494 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:34.571] dice before refine 0.0 and after 0.19708029925823212, label 0: tensor(0, device='cuda:0'), label 1: tensor(40, device='cuda:0') +num_clicks 10 points_length: 440 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8907, fp: 0.0000, label 0: tensor(0), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 420 dynamic_size: 10 +filter out voxels: 97 +First batch: fn: 0.1194, fp: 0.7308, label 0: tensor(57), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 251 dynamic_size: 10 +filter out voxels: 30 +First batch: fn: 0.2287, fp: 0.2794, label 0: tensor(45), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 217 dynamic_size: 10 +filter out voxels: 29 +First batch: fn: 0.1538, fp: 0.2854, label 0: tensor(41), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 216 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.1437, fp: 0.2935, label 0: tensor(42), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 212 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.1417, fp: 0.2874, label 0: tensor(38), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 218 dynamic_size: 10 +filter out voxels: 35 +First batch: fn: 0.1134, fp: 0.3279, label 0: tensor(46), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 210 dynamic_size: 10 +filter out voxels: 35 +First batch: fn: 0.1073, fp: 0.3178, label 0: tensor(45), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 196 dynamic_size: 10 +filter out voxels: 31 +First batch: fn: 0.1093, fp: 0.2874, label 0: tensor(40), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 192 dynamic_size: 10 +filter out voxels: 31 +First batch: fn: 0.1073, fp: 0.2814, label 0: tensor(50), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:37.950] dice before refine 0.0 and after 0.821328341960907, label 0: tensor(50, device='cuda:0'), label 1: tensor(15, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:38.327] dice before refine 0.0 and after 0.6080971956253052, label 0: tensor(0, device='cuda:0'), label 1: tensor(126, device='cuda:0') +num_clicks 10 points_length: 968 dynamic_size: 10 +filter out voxels: 19 +First batch: fn: 0.1837, fp: 0.8685, label 0: tensor(165), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 308 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.2098, fp: 0.1250, label 0: tensor(35), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 567 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.0478, fp: 0.5685, label 0: tensor(165), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 265 dynamic_size: 10 +filter out voxels: 6 +First batch: fn: 0.1380, fp: 0.1500, label 0: tensor(57), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 320 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0772, fp: 0.2707, label 0: tensor(77), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 282 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.0815, fp: 0.2250, label 0: tensor(69), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 268 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0848, fp: 0.2065, label 0: tensor(75), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 255 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.0913, fp: 0.1859, label 0: tensor(73), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 250 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.0924, fp: 0.1793, label 0: tensor(81), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 256 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0793, fp: 0.1989, label 0: tensor(85), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:42.283] dice before refine 0.0 and after 0.8706004023551941, label 0: tensor(85, device='cuda:0'), label 1: tensor(33, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 920 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:42.660] dice before refine 0.0 and after 0.7435123920440674, label 0: tensor(0, device='cuda:0'), label 1: tensor(112, device='cuda:0') +num_clicks 10 points_length: 425 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.3304, fp: 0.1315, label 0: tensor(48), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 477 dynamic_size: 10 +filter out voxels: 31 +First batch: fn: 0.1728, fp: 0.3457, label 0: tensor(101), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 405 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.1326, fp: 0.3076, label 0: tensor(92), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 371 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.1065, fp: 0.2967, label 0: tensor(99), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 348 dynamic_size: 10 +filter out voxels: 20 +First batch: fn: 0.0967, fp: 0.2815, label 0: tensor(89), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 352 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.0859, fp: 0.2967, label 0: tensor(80), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 334 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.0815, fp: 0.2815, label 0: tensor(85), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 309 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.0761, fp: 0.2598, label 0: tensor(103), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 307 dynamic_size: 10 +filter out voxels: 15 +First batch: fn: 0.0783, fp: 0.2554, label 0: tensor(88), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 329 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.0685, fp: 0.2891, label 0: tensor(117), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:46.586] dice before refine 0.0 and after 0.8483647108078003, label 0: tensor(117, device='cuda:0'), label 1: tensor(32, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 838 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(98) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:46.956] dice before refine 0.0 and after 0.6552147269248962, label 0: tensor(0, device='cuda:0'), label 1: tensor(98, device='cuda:0') +num_clicks 10 points_length: 562 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.3628, fp: 0.3079, label 0: tensor(74), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 496 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.1969, fp: 0.3950, label 0: tensor(113), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 317 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.1181, fp: 0.2601, label 0: tensor(71), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 306 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.1169, fp: 0.2482, label 0: tensor(62), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 304 dynamic_size: 10 +filter out voxels: 10 +First batch: fn: 0.0740, fp: 0.2888, label 0: tensor(91), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 264 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1169, fp: 0.1981, label 0: tensor(71), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 258 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.1360, fp: 0.1718, label 0: tensor(65), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 245 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1360, fp: 0.1563, label 0: tensor(54), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 247 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.1002, fp: 0.1945, label 0: tensor(73), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 238 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.1134, fp: 0.1706, label 0: tensor(63), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:50.743] dice before refine 0.0 and after 0.8619102239608765, label 0: tensor(63, device='cuda:0'), label 1: tensor(36, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 901 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:51.121] dice before refine 0.0 and after 0.7563372850418091, label 0: tensor(0, device='cuda:0'), label 1: tensor(135, device='cuda:0') +num_clicks 10 points_length: 471 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.1887, fp: 0.3341, label 0: tensor(97), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 375 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.1920, fp: 0.2242, label 0: tensor(101), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 346 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1432, fp: 0.2408, label 0: tensor(80), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 314 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1321, fp: 0.2164, label 0: tensor(60), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 346 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.0966, fp: 0.2875, label 0: tensor(130), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 289 dynamic_size: 10 +filter out voxels: 1 +First batch: fn: 0.1731, fp: 0.1476, label 0: tensor(77), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 299 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.1110, fp: 0.2209, label 0: tensor(64), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 291 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1188, fp: 0.2042, label 0: tensor(85), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 293 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1154, fp: 0.2098, label 0: tensor(85), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 280 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.1276, fp: 0.1831, label 0: tensor(51), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:55.070] dice before refine 0.0 and after 0.8386433720588684, label 0: tensor(51, device='cuda:0'), label 1: tensor(44, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 1964 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:32:55.448] dice before refine 0.0 and after 0.2758890986442566, label 0: tensor(0, device='cuda:0'), label 1: tensor(121, device='cuda:0') +num_clicks 10 points_length: 7391 dynamic_size: 10 +filter out voxels: 3774 +First batch: fn: 0.2831, fp: 3.4801, label 0: tensor(356), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7205 dynamic_size: 10 +filter out voxels: 2748 +First batch: fn: 0.0545, fp: 3.6141, label 0: tensor(449), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6355 dynamic_size: 10 +filter out voxels: 1942 +First batch: fn: 0.0321, fp: 3.2037, label 0: tensor(508), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4903 dynamic_size: 10 +filter out voxels: 1512 +First batch: fn: 0.0479, fp: 2.4486, label 0: tensor(478), label 1: tensor(45) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3798 dynamic_size: 10 +filter out voxels: 1232 +First batch: fn: 0.0418, fp: 1.8921, label 0: tensor(417), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2328 dynamic_size: 10 +filter out voxels: 542 +First batch: fn: 0.0748, fp: 1.1105, label 0: tensor(272), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1502 dynamic_size: 10 +filter out voxels: 7 +First batch: fn: 0.0377, fp: 0.7271, label 0: tensor(290), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 685 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0331, fp: 0.3157, label 0: tensor(119), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 628 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0351, fp: 0.2846, label 0: tensor(144), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 606 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0382, fp: 0.2704, label 0: tensor(123), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:01.144] dice before refine 0.0030581040773540735 and after 0.8702502250671387, label 0: tensor(123, device='cuda:0'), label 1: tensor(23, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 2027 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:01.535] dice before refine 0.0 and after 0.7190375328063965, label 0: tensor(0, device='cuda:0'), label 1: tensor(155, device='cuda:0') +num_clicks 10 points_length: 1191 dynamic_size: 10 +filter out voxels: 48 +First batch: fn: 0.2481, fp: 0.3394, label 0: tensor(152), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2226 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1149, fp: 0.9832, label 0: tensor(191), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1685 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0548, fp: 0.7765, label 0: tensor(205), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1103 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0676, fp: 0.4766, label 0: tensor(215), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1121 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0893, fp: 0.4637, label 0: tensor(208), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1003 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0419, fp: 0.4529, label 0: tensor(208), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 715 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0765, fp: 0.2763, label 0: tensor(86), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1233 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0513, fp: 0.5570, label 0: tensor(145), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 937 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0385, fp: 0.4238, label 0: tensor(183), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 871 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0247, fp: 0.4050, label 0: tensor(179), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:06.102] dice before refine 0.0015781167894601822 and after 0.8685612678527832, label 0: tensor(179, device='cuda:0'), label 1: tensor(32, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.6922954348000613 +[23:33:06.775] epoch: 6/20, iter: 6/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-121/image.nii.gz',) mean dice over clicks:0.6922954348000613 stich left and right side (total size): 1 +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:07.261] dice before refine 0.0 and after 0.6770908236503601, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 4502 dynamic_size: 10 +filter out voxels: 473 +First batch: fn: 0.3532, fp: 0.2636, label 0: tensor(303), label 1: tensor(371) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5132 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.1559, fp: 0.5473, label 0: tensor(507), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4181 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.1126, fp: 0.4603, label 0: tensor(410), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3653 dynamic_size: 10 +filter out voxels: 18 +First batch: fn: 0.0895, fp: 0.4111, label 0: tensor(428), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3300 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.0703, fp: 0.3819, label 0: tensor(453), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2836 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.0581, fp: 0.3305, label 0: tensor(415), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2314 dynamic_size: 10 +filter out voxels: 17 +First batch: fn: 0.0662, fp: 0.2509, label 0: tensor(316), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2210 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0577, fp: 0.2451, label 0: tensor(346), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2190 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.0511, fp: 0.2490, label 0: tensor(327), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2076 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0530, fp: 0.2314, label 0: tensor(346), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:14.511] dice before refine 0.3676094710826874 and after 0.8743565082550049, label 0: tensor(346, device='cuda:0'), label 1: tensor(106, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7298 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(492) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:14.946] dice before refine 0.00016326530021615326 and after 0.6709035038948059, label 0: tensor(0, device='cuda:0'), label 1: tensor(492, device='cuda:0') +num_clicks 10 points_length: 4298 dynamic_size: 10 +filter out voxels: 258 +First batch: fn: 0.3997, fp: 0.1892, label 0: tensor(240), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5105 dynamic_size: 10 +filter out voxels: 22 +First batch: fn: 0.0955, fp: 0.6040, label 0: tensor(509), label 1: tensor(132) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4396 dynamic_size: 10 +filter out voxels: 16 +First batch: fn: 0.0708, fp: 0.5315, label 0: tensor(510), label 1: tensor(122) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3580 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.0444, fp: 0.4461, label 0: tensor(452), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2791 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0570, fp: 0.3254, label 0: tensor(383), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2277 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0603, fp: 0.2517, label 0: tensor(413), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1938 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.0640, fp: 0.2016, label 0: tensor(250), label 1: tensor(115) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1887 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.0634, fp: 0.1951, label 0: tensor(328), label 1: tensor(112) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1769 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0665, fp: 0.1759, label 0: tensor(267), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1716 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.0674, fp: 0.1677, label 0: tensor(339), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:22.224] dice before refine 0.43440285325050354 and after 0.8933351039886475, label 0: tensor(339, device='cuda:0'), label 1: tensor(114, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(343) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:22.644] dice before refine 0.0024639645125716925 and after 0.5369448661804199, label 0: tensor(0, device='cuda:0'), label 1: tensor(343, device='cuda:0') +num_clicks 10 points_length: 4838 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.6044, fp: 0.0780, label 0: tensor(148), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5067 dynamic_size: 10 +filter out voxels: 26 +First batch: fn: 0.2166, fp: 0.4980, label 0: tensor(506), label 1: tensor(184) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3681 dynamic_size: 10 +filter out voxels: 2 +First batch: fn: 0.1790, fp: 0.3402, label 0: tensor(375), label 1: tensor(209) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3216 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.1134, fp: 0.3402, label 0: tensor(371), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2855 dynamic_size: 10 +filter out voxels: 49 +First batch: fn: 0.0944, fp: 0.3083, label 0: tensor(359), label 1: tensor(121) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2545 dynamic_size: 10 +filter out voxels: 49 +First batch: fn: 0.0839, fp: 0.2750, label 0: tensor(256), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2412 dynamic_size: 10 +filter out voxels: 51 +First batch: fn: 0.0845, fp: 0.2557, label 0: tensor(328), label 1: tensor(94) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2186 dynamic_size: 10 +filter out voxels: 49 +First batch: fn: 0.0869, fp: 0.2214, label 0: tensor(246), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2265 dynamic_size: 10 +filter out voxels: 43 +First batch: fn: 0.0804, fp: 0.2391, label 0: tensor(366), label 1: tensor(97) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1985 dynamic_size: 10 +filter out voxels: 49 +First batch: fn: 0.0794, fp: 0.2006, label 0: tensor(231), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:29.560] dice before refine 0.3656862676143646 and after 0.8661448955535889, label 0: tensor(231, device='cuda:0'), label 1: tensor(101, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 7090 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(453) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:29.988] dice before refine 0.0 and after 0.5547902584075928, label 0: tensor(0, device='cuda:0'), label 1: tensor(453, device='cuda:0') +num_clicks 10 points_length: 4977 dynamic_size: 10 +filter out voxels: 21 +First batch: fn: 0.5626, fp: 0.1394, label 0: tensor(178), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4171 dynamic_size: 10 +filter out voxels: 11 +First batch: fn: 0.1681, fp: 0.4202, label 0: tensor(458), label 1: tensor(159) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3644 dynamic_size: 10 +filter out voxels: 13 +First batch: fn: 0.1646, fp: 0.3494, label 0: tensor(315), label 1: tensor(155) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3548 dynamic_size: 10 +filter out voxels: 36 +First batch: fn: 0.1237, fp: 0.3767, label 0: tensor(472), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3153 dynamic_size: 10 +filter out voxels: 60 +First batch: fn: 0.1023, fp: 0.3425, label 0: tensor(441), label 1: tensor(113) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2644 dynamic_size: 10 +filter out voxels: 62 +First batch: fn: 0.0962, fp: 0.2767, label 0: tensor(289), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2581 dynamic_size: 10 +filter out voxels: 59 +First batch: fn: 0.0907, fp: 0.2733, label 0: tensor(345), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2313 dynamic_size: 10 +filter out voxels: 56 +First batch: fn: 0.0922, fp: 0.2340, label 0: tensor(298), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2267 dynamic_size: 10 +filter out voxels: 54 +First batch: fn: 0.0815, fp: 0.2382, label 0: tensor(383), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2054 dynamic_size: 10 +filter out voxels: 56 +First batch: fn: 0.0790, fp: 0.2107, label 0: tensor(324), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:37.060] dice before refine 0.3817089796066284 and after 0.8697621822357178, label 0: tensor(324, device='cuda:0'), label 1: tensor(117, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 36954 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:37.598] dice before refine 0.43121469020843506 and after 0.33703938126564026, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 30351 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7912, fp: 0.0301, label 0: tensor(229), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 29280 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6463, fp: 0.1460, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26689 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6004, fp: 0.1218, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21854 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4886, fp: 0.1027, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19812 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4073, fp: 0.1288, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18626 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3496, fp: 0.1544, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18848 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3107, fp: 0.1993, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 17441 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2679, fp: 0.2040, label 0: tensor(505), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15705 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1977, fp: 0.2273, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14299 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1479, fp: 0.2391, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:48.555] dice before refine 0.6350753903388977 and after 0.8416408896446228, label 0: tensor(506, device='cuda:0'), label 1: tensor(504, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 35104 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:49.087] dice before refine 0.33133476972579956 and after 0.35652831196784973, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 28047 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7787, fp: 0.0203, label 0: tensor(192), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26794 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6260, fp: 0.1373, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24402 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5670, fp: 0.1281, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 21538 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.4785, fp: 0.1350, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19137 dynamic_size: 10 +filter out voxels: 33 +First batch: fn: 0.4113, fp: 0.1339, label 0: tensor(506), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16477 dynamic_size: 10 +filter out voxels: 37 +First batch: fn: 0.3312, fp: 0.1382, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14704 dynamic_size: 10 +filter out voxels: 36 +First batch: fn: 0.2513, fp: 0.1676, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13998 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.2107, fp: 0.1880, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12619 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.1584, fp: 0.2011, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11774 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.0992, fp: 0.2362, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:33:59.730] dice before refine 0.6676807999610901 and after 0.8559686541557312, label 0: tensor(508, device='cuda:0'), label 1: tensor(502, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26886 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:00.252] dice before refine 0.16251030564308167 and after 0.3652637004852295, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 23119 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7526, fp: 0.1073, label 0: tensor(478), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 18484 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6227, fp: 0.0648, label 0: tensor(415), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16431 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4703, fp: 0.1409, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 14050 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3885, fp: 0.1340, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12192 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2778, fp: 0.1756, label 0: tensor(502), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11733 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2067, fp: 0.2297, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9891 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1111, fp: 0.2568, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9316 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0534, fp: 0.2931, label 0: tensor(508), label 1: tensor(364) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8455 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0424, fp: 0.2721, label 0: tensor(509), label 1: tensor(250) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8112 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0403, fp: 0.2614, label 0: tensor(509), label 1: tensor(273) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:10.992] dice before refine 0.6492740511894226 and after 0.8656890392303467, label 0: tensor(509, device='cuda:0'), label 1: tensor(273, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 26252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:11.514] dice before refine 0.16161857545375824 and after 0.36286646127700806, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 21667 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7650, fp: 0.0604, label 0: tensor(353), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 19080 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5907, fp: 0.1361, label 0: tensor(482), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15950 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4844, fp: 0.1232, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 13530 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3987, fp: 0.1167, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12215 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3190, fp: 0.1463, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10852 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2136, fp: 0.1998, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10161 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1395, fp: 0.2476, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 10386 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0917, fp: 0.3039, label 0: tensor(508), label 1: tensor(379) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9225 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0507, fp: 0.3007, label 0: tensor(508), label 1: tensor(256) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8727 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0414, fp: 0.2910, label 0: tensor(510), label 1: tensor(273) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:22.100] dice before refine 0.6451520919799805 and after 0.8600566983222961, label 0: tensor(510, device='cuda:0'), label 1: tensor(273, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.702048355882818 +[23:34:22.706] epoch: 6/20, iter: 7/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-113/image.nii.gz',) mean dice over clicks:0.702048355882818 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(150) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:23.217] dice before refine 0.8006832003593445 and after 0.7167272567749023, label 0: tensor(0, device='cuda:0'), label 1: tensor(150, device='cuda:0') +num_clicks 10 points_length: 1558 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3715, fp: 0.1253, label 0: tensor(137), label 1: tensor(164) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 996 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0599, fp: 0.2577, label 0: tensor(189), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 937 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0434, fp: 0.2554, label 0: tensor(199), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 857 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0300, fp: 0.2433, label 0: tensor(157), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 709 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0440, fp: 0.1821, label 0: tensor(176), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 961 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0124, fp: 0.2940, label 0: tensor(166), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 833 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0163, fp: 0.2494, label 0: tensor(134), label 1: tensor(28) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 680 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0271, fp: 0.1897, label 0: tensor(223), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 604 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0373, fp: 0.1553, label 0: tensor(177), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 637 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0246, fp: 0.1786, label 0: tensor(139), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:27.813] dice before refine 0.8137419819831848 and after 0.9054550528526306, label 0: tensor(139, device='cuda:0'), label 1: tensor(46, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(137) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:28.192] dice before refine 0.8061880469322205 and after 0.7158779501914978, label 0: tensor(0, device='cuda:0'), label 1: tensor(137, device='cuda:0') +num_clicks 10 points_length: 1555 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3753, fp: 0.1205, label 0: tensor(127), label 1: tensor(226) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1573 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0344, fp: 0.4672, label 0: tensor(224), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1019 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0526, fp: 0.2723, label 0: tensor(210), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 926 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0252, fp: 0.2701, label 0: tensor(165), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 898 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0137, fp: 0.2726, label 0: tensor(181), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 721 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0236, fp: 0.2063, label 0: tensor(136), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 802 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0153, fp: 0.2404, label 0: tensor(133), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 720 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0198, fp: 0.2098, label 0: tensor(109), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 680 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0198, fp: 0.1971, label 0: tensor(179), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 613 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0255, fp: 0.1700, label 0: tensor(116), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:32.745] dice before refine 0.807012140750885 and after 0.9050922393798828, label 0: tensor(116, device='cuda:0'), label 1: tensor(50, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:33.123] dice before refine 0.7235087752342224 and after 0.6280648708343506, label 0: tensor(0, device='cuda:0'), label 1: tensor(142, device='cuda:0') +num_clicks 10 points_length: 1972 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4691, fp: 0.1598, label 0: tensor(91), label 1: tensor(300) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2576 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0092, fp: 0.8122, label 0: tensor(379), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1530 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0293, fp: 0.4585, label 0: tensor(319), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1019 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0399, fp: 0.2851, label 0: tensor(154), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 949 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0188, fp: 0.2838, label 0: tensor(201), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 827 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0268, fp: 0.2369, label 0: tensor(149), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 781 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0255, fp: 0.2235, label 0: tensor(142), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 764 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0159, fp: 0.2277, label 0: tensor(152), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 711 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0236, fp: 0.2031, label 0: tensor(152), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 647 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0284, fp: 0.1779, label 0: tensor(162), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:38.154] dice before refine 0.8319389224052429 and after 0.9046629071235657, label 0: tensor(162, device='cuda:0'), label 1: tensor(59, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 3136 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:38.533] dice before refine 0.6922461986541748 and after 0.5520104765892029, label 0: tensor(0, device='cuda:0'), label 1: tensor(110, device='cuda:0') +num_clicks 10 points_length: 2050 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5973, fp: 0.0564, label 0: tensor(52), label 1: tensor(271) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 1876 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0335, fp: 0.5647, label 0: tensor(401), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 991 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0357, fp: 0.2803, label 0: tensor(180), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 926 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0188, fp: 0.2765, label 0: tensor(220), label 1: tensor(29) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 766 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0293, fp: 0.2149, label 0: tensor(145), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 802 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0191, fp: 0.2366, label 0: tensor(145), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 751 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0204, fp: 0.2191, label 0: tensor(114), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 680 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0383, fp: 0.1786, label 0: tensor(169), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 760 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0453, fp: 0.1971, label 0: tensor(121), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 844 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0198, fp: 0.2494, label 0: tensor(178), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:43.224] dice before refine 0.8273118734359741 and after 0.8765555620193481, label 0: tensor(178, device='cuda:0'), label 1: tensor(39, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.8409092426300049 +[23:34:43.676] epoch: 6/20, iter: 8/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-81/image.nii.gz',) mean dice over clicks:0.8409092426300049 stich left and right side (total size): 1 +num_clicks 10 points_length: 19676 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:44.212] dice before refine 0.0 and after 0.0923004224896431, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 19216 dynamic_size: 10 +filter out voxels: 496 +First batch: fn: 0.9503, fp: 0.0263, label 0: tensor(14), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 16547 dynamic_size: 10 +filter out voxels: 423 +First batch: fn: 0.7971, fp: 0.0439, label 0: tensor(120), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 12442 dynamic_size: 10 +filter out voxels: 152 +First batch: fn: 0.5510, fp: 0.0813, label 0: tensor(317), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9174 dynamic_size: 10 +filter out voxels: 80 +First batch: fn: 0.3968, fp: 0.0695, label 0: tensor(307), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7323 dynamic_size: 10 +filter out voxels: 67 +First batch: fn: 0.2823, fp: 0.0899, label 0: tensor(334), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6290 dynamic_size: 10 +filter out voxels: 57 +First batch: fn: 0.2178, fp: 0.1018, label 0: tensor(550), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5267 dynamic_size: 10 +filter out voxels: 23 +First batch: fn: 0.1899, fp: 0.0778, label 0: tensor(385), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4701 dynamic_size: 10 +filter out voxels: 38 +First batch: fn: 0.1233, fp: 0.1156, label 0: tensor(537), label 1: tensor(397) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4155 dynamic_size: 10 +filter out voxels: 24 +First batch: fn: 0.1237, fp: 0.0875, label 0: tensor(473), label 1: tensor(383) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3672 dynamic_size: 10 +filter out voxels: 25 +First batch: fn: 0.0966, fp: 0.0900, label 0: tensor(445), label 1: tensor(287) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:53.021] dice before refine 0.4529256522655487 and after 0.9097163677215576, label 0: tensor(445, device='cuda:0'), label 1: tensor(287, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 30548 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:34:53.528] dice before refine 0.0 and after 0.04199540987610817, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 30477 dynamic_size: 10 +filter out voxels: 543 +First batch: fn: 0.9781, fp: 0.0195, label 0: tensor(24), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28373 dynamic_size: 10 +filter out voxels: 729 +First batch: fn: 0.8899, fp: 0.0389, label 0: tensor(183), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 26558 dynamic_size: 10 +filter out voxels: 54 +First batch: fn: 0.8604, fp: 0.0090, label 0: tensor(95), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 24088 dynamic_size: 10 +filter out voxels: 27 +First batch: fn: 0.7610, fp: 0.0275, label 0: tensor(204), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 22130 dynamic_size: 10 +filter out voxels: 3 +First batch: fn: 0.6603, fp: 0.0642, label 0: tensor(492), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 20059 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6193, fp: 0.0374, label 0: tensor(275), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 15357 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4604, fp: 0.0423, label 0: tensor(367), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11907 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3557, fp: 0.0341, label 0: tensor(263), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8229 dynamic_size: 10 +filter out voxels: 4 +First batch: fn: 0.2176, fp: 0.0518, label 0: tensor(388), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6473 dynamic_size: 10 +filter out voxels: 5 +First batch: fn: 0.1649, fp: 0.0470, label 0: tensor(416), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:02.357] dice before refine 0.5211910009384155 and after 0.9046224355697632, label 0: tensor(416, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 23425 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:02.820] dice before refine 0.6953917145729065 and after 0.6130803823471069, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 13950 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5282, fp: 0.0673, label 0: tensor(378), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 9545 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2786, fp: 0.1289, label 0: tensor(487), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 7149 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1738, fp: 0.1314, label 0: tensor(507), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5209 dynamic_size: 10 +filter out voxels: 12 +First batch: fn: 0.0879, fp: 0.1344, label 0: tensor(505), label 1: tensor(362) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4287 dynamic_size: 10 +filter out voxels: 49 +First batch: fn: 0.0467, fp: 0.1363, label 0: tensor(498), label 1: tensor(236) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3571 dynamic_size: 10 +filter out voxels: 35 +First batch: fn: 0.0434, fp: 0.1090, label 0: tensor(474), label 1: tensor(260) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3188 dynamic_size: 10 +filter out voxels: 36 +First batch: fn: 0.0294, fp: 0.1067, label 0: tensor(542), label 1: tensor(171) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2855 dynamic_size: 10 +filter out voxels: 28 +First batch: fn: 0.0338, fp: 0.0881, label 0: tensor(328), label 1: tensor(207) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3104 dynamic_size: 10 +filter out voxels: 39 +First batch: fn: 0.0208, fp: 0.1117, label 0: tensor(425), label 1: tensor(182) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2873 dynamic_size: 10 +filter out voxels: 39 +First batch: fn: 0.0210, fp: 0.1016, label 0: tensor(378), label 1: tensor(133) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:11.735] dice before refine 0.8154881596565247 and after 0.9440842866897583, label 0: tensor(378, device='cuda:0'), label 1: tensor(133, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 25823 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:12.214] dice before refine 0.7219282984733582 and after 0.6748161315917969, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 13487 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4581, fp: 0.0642, label 0: tensor(345), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 11538 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3167, fp: 0.1301, label 0: tensor(504), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 8408 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2031, fp: 0.1225, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6357 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1068, fp: 0.1393, label 0: tensor(508), label 1: tensor(469) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5327 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0489, fp: 0.1574, label 0: tensor(508), label 1: tensor(363) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5192 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0259, fp: 0.1751, label 0: tensor(507), label 1: tensor(224) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4596 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0198, fp: 0.1582, label 0: tensor(553), label 1: tensor(174) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4263 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0171, fp: 0.1480, label 0: tensor(509), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3996 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0167, fp: 0.1381, label 0: tensor(509), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3671 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0175, fp: 0.1246, label 0: tensor(506), label 1: tensor(153) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:21.602] dice before refine 0.7976645827293396 and after 0.9350706934928894, label 0: tensor(506, device='cuda:0'), label 1: tensor(153, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 69252 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:22.180] dice before refine 0.43966731429100037 and after 0.3049219846725464, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 57476 dynamic_size: 10 +filter out voxels: 14 +First batch: fn: 0.8180, fp: 0.0120, label 0: tensor(209), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 51034 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7177, fp: 0.0192, label 0: tensor(271), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47323 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6586, fp: 0.0247, label 0: tensor(290), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 44019 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5961, fp: 0.0395, label 0: tensor(444), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42811 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5648, fp: 0.0534, label 0: tensor(546), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 39432 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5243, fp: 0.0451, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 35793 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4677, fp: 0.0492, label 0: tensor(466), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 32447 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4213, fp: 0.0472, label 0: tensor(500), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 28859 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3666, fp: 0.0501, label 0: tensor(503), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 25941 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3258, fp: 0.0488, label 0: tensor(501), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:32.947] dice before refine 0.6723085045814514 and after 0.80076664686203, label 0: tensor(501, device='cuda:0'), label 1: tensor(509, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 92139 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:33.570] dice before refine 0.44417765736579895 and after 0.2600666284561157, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 78851 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.8496, fp: 0.0062, label 0: tensor(162), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 68985 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7398, fp: 0.0089, label 0: tensor(268), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 65294 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6925, fp: 0.0161, label 0: tensor(353), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 60632 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6435, fp: 0.0146, label 0: tensor(428), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 56946 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6095, fp: 0.0086, label 0: tensor(252), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 51140 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5388, fp: 0.0163, label 0: tensor(408), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 50498 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.5322, fp: 0.0159, label 0: tensor(426), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 47772 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4967, fp: 0.0218, label 0: tensor(512), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 46498 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4837, fp: 0.0209, label 0: tensor(545), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 42941 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.4503, fp: 0.0157, label 0: tensor(441), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:44.120] dice before refine 0.6482936143875122 and after 0.741105854511261, label 0: tensor(441, device='cuda:0'), label 1: tensor(510, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 10350 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:44.575] dice before refine 0.296221524477005 and after 0.48155179619789124, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 8740 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6078, fp: 0.2366, label 0: tensor(319), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6808 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2694, fp: 0.3884, label 0: tensor(507), label 1: tensor(400) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5590 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0914, fp: 0.4487, label 0: tensor(506), label 1: tensor(202) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5013 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0522, fp: 0.4322, label 0: tensor(510), label 1: tensor(120) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4431 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0368, fp: 0.3913, label 0: tensor(508), label 1: tensor(102) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3991 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0291, fp: 0.3565, label 0: tensor(509), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3563 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0356, fp: 0.3087, label 0: tensor(509), label 1: tensor(109) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3171 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0357, fp: 0.2707, label 0: tensor(508), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2792 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0450, fp: 0.2247, label 0: tensor(507), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2600 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0445, fp: 0.2067, label 0: tensor(555), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:52.857] dice before refine 0.6536476016044617 and after 0.8924158811569214, label 0: tensor(555, device='cuda:0'), label 1: tensor(117, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 9566 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:35:53.285] dice before refine 0.07422802597284317 and after 0.4019607901573181, label 0: tensor(0, device='cuda:0'), label 1: tensor(510, device='cuda:0') +num_clicks 10 points_length: 8296 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.7086, fp: 0.1587, label 0: tensor(326), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5199 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2774, fp: 0.2660, label 0: tensor(381), label 1: tensor(439) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 5099 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0582, fp: 0.4748, label 0: tensor(509), label 1: tensor(119) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4905 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0434, fp: 0.4694, label 0: tensor(510), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4203 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0361, fp: 0.4033, label 0: tensor(523), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3484 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0326, fp: 0.3316, label 0: tensor(541), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2958 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0371, fp: 0.2721, label 0: tensor(425), label 1: tensor(81) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2738 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0389, fp: 0.2473, label 0: tensor(508), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2399 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0404, fp: 0.2104, label 0: tensor(408), label 1: tensor(89) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 2359 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0388, fp: 0.2078, label 0: tensor(444), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:36:01.074] dice before refine 0.6644598245620728 and after 0.8929039835929871, label 0: tensor(444, device='cuda:0'), label 1: tensor(88, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.6719500422477722 +[23:36:01.594] epoch: 6/20, iter: 9/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-90/image.nii.gz',) mean dice over clicks:0.6719500422477722 stich left and right side (total size): 1 +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +found empty patch +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(15) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:36:02.120] dice before refine 0.0 and after 0.012129860930144787, label 0: tensor(0, device='cuda:0'), label 1: tensor(15, device='cuda:0') +num_clicks 10 points_length: 5538 dynamic_size: 10 +filter out voxels: 5421 +First batch: fn: 0.7344, fp: 42.5312, label 0: tensor(20), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 6744 dynamic_size: 10 +filter out voxels: 6550 +First batch: fn: 0.4453, fp: 52.2422, label 0: tensor(26), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4178 dynamic_size: 10 +filter out voxels: 3967 +First batch: fn: 0.3906, fp: 32.2500, label 0: tensor(25), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3479 dynamic_size: 10 +filter out voxels: 3286 +First batch: fn: 0.3984, fp: 26.7812, label 0: tensor(25), label 1: tensor(2) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3714 dynamic_size: 10 +filter out voxels: 3541 +First batch: fn: 0.4297, fp: 28.5859, label 0: tensor(20), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4944 dynamic_size: 10 +filter out voxels: 4722 +First batch: fn: 0.3125, fp: 38.3125, label 0: tensor(64), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3227 dynamic_size: 10 +filter out voxels: 3093 +First batch: fn: 0.4844, fp: 24.7266, label 0: tensor(19), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4921 dynamic_size: 10 +filter out voxels: 4757 +First batch: fn: 0.4141, fp: 38.0312, label 0: tensor(35), label 1: tensor(1) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 3169 dynamic_size: 10 +filter out voxels: 3021 +First batch: fn: 0.4219, fp: 24.3359, label 0: tensor(32), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 4902 dynamic_size: 10 +filter out voxels: 4704 +First batch: fn: 0.2578, fp: 38.0391, label 0: tensor(28), label 1: tensor(4) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:36:05.182] dice before refine 0.0 and after 0.04652378335595131, label 0: tensor(28, device='cuda:0'), label 1: tensor(4, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +num_clicks 10 points_length: 128 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:36:05.534] dice before refine 0.0 and after 0.1949685513973236, label 0: tensor(0, device='cuda:0'), label 1: tensor(21, device='cuda:0') +num_clicks 10 points_length: 512 dynamic_size: 10 +filter out voxels: 354 +First batch: fn: 0.5156, fp: 3.4844, label 0: tensor(22), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 276 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2891, fp: 1.8672, label 0: tensor(43), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 260 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2891, fp: 1.7422, label 0: tensor(52), label 1: tensor(3) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 106 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.6094, fp: 0.2188, label 0: tensor(13), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 375 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0625, fp: 2.8672, label 0: tensor(57), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 299 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.0859, fp: 2.2500, label 0: tensor(33), label 1: tensor(12) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 158 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.2266, fp: 1.0078, label 0: tensor(40), label 1: tensor(9) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 113 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.3359, fp: 0.5469, label 0: tensor(15), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 209 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1641, fp: 1.4688, label 0: tensor(32), label 1: tensor(13) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +num_clicks 10 points_length: 147 dynamic_size: 10 +filter out voxels: 0 +First batch: fn: 0.1875, fp: 0.9609, label 0: tensor(31), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +[23:36:08.666] dice before refine 0.0 and after 0.5864661931991577, label 0: tensor(31, device='cuda:0'), label 1: tensor(10, device='cuda:0') +torch.Size([11, 1, 128, 128, 128]) +0.4685451496731151 +[23:36:09.165] epoch: 6/20, iter: 10/11 subject: ('/teamspace/studios/this_studio/lits/Task01_LITS17/Training/volume-127/image.nii.gz',) mean dice over clicks:0.4685451496731151 stich left and right side (total size): 1 +[23:36:09.166] - Val metrics mean dice: 0.6547432918070762 +Checkpoint Directory exists! +[23:36:10.015] - Val metrics best mean dice: 0.6547432918070762 at epoch 6 +num_clicks 50 points_length: 1840 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(141) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.12666280567646027 and after 0.2147132307291031 +num_clicks 50 points_length: 2165 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6185, fp: 0.5582, label 0: tensor(250), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.16131854057312012 and after 0.2667482793331146 +num_clicks 50 points_length: 1669 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7457, fp: 0.1614, label 0: tensor(74), label 1: tensor(214) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2679995894432068 and after 0.4838634431362152 +num_clicks 50 points_length: 1916 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2027, fp: 0.8386, label 0: tensor(372), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2843032777309418 and after 0.5965787172317505 +num_clicks 50 points_length: 1482 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1255, fp: 0.6799, label 0: tensor(344), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3308209776878357 and after 0.6690064668655396 +num_clicks 50 points_length: 1123 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1288, fp: 0.4815, label 0: tensor(247), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33608478307724 and after 0.7125232219696045 +num_clicks 50 points_length: 836 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0842, fp: 0.3701, label 0: tensor(224), label 1: tensor(65) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3426437973976135 and after 0.7308681011199951 +num_clicks 50 points_length: 738 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0685, fp: 0.3326, label 0: tensor(217), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3455938398838043 and after 0.739016592502594 +num_clicks 50 points_length: 767 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0467, fp: 0.3701, label 0: tensor(164), label 1: tensor(59) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3473392426967621 and after 0.7409234046936035 +num_clicks 50 points_length: 827 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0315, fp: 0.4179, label 0: tensor(221), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3491246700286865 and after 0.7505654096603394 +num_clicks 50 points_length: 776 dynamic_size: 23 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0332, fp: 0.3886, label 0: tensor(206), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3444075584411621 and after 0.762735903263092 +epoch: 7/20, iter: 0/42: loss:2.8316: rank:-1 +[23:36:32.107] epoch: 7/20, iter: 0/42: loss:2.8316: rank:-1 +num_clicks 50 points_length: 7916 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(367) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0056636095978319645 and after 0.26784518361091614 +num_clicks 50 points_length: 5576 dynamic_size: 37 +filter out voxels: 12 +filter out voxels: 0 +First batch: fn: 0.9858, fp: 0.0012, label 0: tensor(61), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.13819243013858795 and after 0.4054734408855438 +num_clicks 50 points_length: 5072 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9524, fp: 0.0004, label 0: tensor(46), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.10537740588188171 and after 0.4426748752593994 +num_clicks 50 points_length: 4590 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9309, fp: 0.0004, label 0: tensor(42), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0994371548295021 and after 0.47862508893013 +num_clicks 50 points_length: 4198 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9020, fp: 0.0005, label 0: tensor(29), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.10297946631908417 and after 0.4991299510002136 +num_clicks 50 points_length: 4589 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8709, fp: 0.0008, label 0: tensor(71), label 1: tensor(525) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.10115955770015717 and after 0.5179523229598999 +num_clicks 50 points_length: 4026 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8595, fp: 0.0010, label 0: tensor(0), label 1: tensor(494) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11004965007305145 and after 0.5491800308227539 +num_clicks 50 points_length: 3638 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8277, fp: 0.0024, label 0: tensor(23), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11843910813331604 and after 0.5555148720741272 +num_clicks 50 points_length: 3797 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8171, fp: 0.0032, label 0: tensor(63), label 1: tensor(527) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.10893590748310089 and after 0.5679126977920532 +num_clicks 50 points_length: 3271 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8134, fp: 0.0030, label 0: tensor(0), label 1: tensor(441) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11195290088653564 and after 0.5783182382583618 +num_clicks 50 points_length: 3249 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8002, fp: 0.0035, label 0: tensor(0), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09127543866634369 and after 0.6029462814331055 +epoch: 7/20, iter: 1/42: loss:4.3542: rank:-1 +[23:36:51.683] epoch: 7/20, iter: 1/42: loss:4.3542: rank:-1 +num_clicks 50 points_length: 2933 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(180) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6002470850944519 and after 0.672976016998291 +num_clicks 50 points_length: 996 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 140 +First batch: fn: 0.1476, fp: 0.1920, label 0: tensor(142), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7387418746948242 and after 0.7515519857406616 +num_clicks 50 points_length: 946 dynamic_size: 35 +filter out voxels: 0 +filter out voxels: 632 +First batch: fn: 0.0621, fp: 0.2605, label 0: tensor(185), label 1: tensor(61) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7088682651519775 and after 0.8091310262680054 +num_clicks 50 points_length: 880 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 238 +First batch: fn: 0.0324, fp: 0.2676, label 0: tensor(231), label 1: tensor(42) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7232972979545593 and after 0.8261277675628662 +num_clicks 50 points_length: 721 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 117 +First batch: fn: 0.0344, fp: 0.2114, label 0: tensor(194), label 1: tensor(43) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7652879953384399 and after 0.8355982899665833 +num_clicks 50 points_length: 661 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0406, fp: 0.1848, label 0: tensor(156), label 1: tensor(53) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7767283320426941 and after 0.8392585515975952 +num_clicks 50 points_length: 657 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0355, fp: 0.1885, label 0: tensor(118), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7793498039245605 and after 0.8379312753677368 +num_clicks 50 points_length: 670 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0365, fp: 0.1920, label 0: tensor(117), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7766504287719727 and after 0.8425012826919556 +num_clicks 50 points_length: 636 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0372, fp: 0.1797, label 0: tensor(117), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7778193950653076 and after 0.8448525667190552 +num_clicks 50 points_length: 637 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0375, fp: 0.1797, label 0: tensor(169), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7784576416015625 and after 0.85370934009552 +num_clicks 50 points_length: 626 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0361, fp: 0.1773, label 0: tensor(129), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7749934196472168 and after 0.851705014705658 +epoch: 7/20, iter: 2/42: loss:1.1805: rank:-1 +[23:37:03.338] epoch: 7/20, iter: 2/42: loss:1.1805: rank:-1 +num_clicks 50 points_length: 1127 dynamic_size: 2 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47676753997802734 and after 0.5011715888977051 +num_clicks 50 points_length: 3874 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 2628 +First batch: fn: 0.2047, fp: 0.0681, label 0: tensor(34), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4306800663471222 and after 0.5838379859924316 +num_clicks 50 points_length: 3033 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 264 +First batch: fn: 0.0072, fp: 0.3743, label 0: tensor(386), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46131062507629395 and after 0.8239957690238953 +num_clicks 50 points_length: 573 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0175, fp: 0.2190, label 0: tensor(43), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4494645893573761 and after 0.7729519605636597 +num_clicks 50 points_length: 859 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0018, fp: 0.3693, label 0: tensor(197), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6945943832397461 and after 0.7941988706588745 +num_clicks 50 points_length: 943 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0089, fp: 0.2255, label 0: tensor(116), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6969856023788452 and after 0.7983934879302979 +num_clicks 50 points_length: 858 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0045, fp: 0.2589, label 0: tensor(129), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6894432306289673 and after 0.8262206315994263 +num_clicks 50 points_length: 680 dynamic_size: 20 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0056, fp: 0.2244, label 0: tensor(119), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6862936019897461 and after 0.8402305841445923 +num_clicks 50 points_length: 570 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0042, fp: 0.2232, label 0: tensor(92), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6967581510543823 and after 0.8426367044448853 +num_clicks 50 points_length: 551 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0049, fp: 0.2201, label 0: tensor(89), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6553610563278198 and after 0.8569949865341187 +num_clicks 50 points_length: 465 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0048, fp: 0.2158, label 0: tensor(144), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6580075621604919 and after 0.8618022203445435 +epoch: 7/20, iter: 3/42: loss:1.8346: rank:-1 +[23:37:15.794] epoch: 7/20, iter: 3/42: loss:1.8346: rank:-1 +num_clicks 50 points_length: 712 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.17742590606212616 and after 0.2539682686328888 +num_clicks 50 points_length: 1240 dynamic_size: 37 +filter out voxels: 73 +filter out voxels: 0 +First batch: fn: 0.1011, fp: 1.6404, label 0: tensor(212), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26797008514404297 and after 0.3232170045375824 +num_clicks 50 points_length: 699 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 7 +First batch: fn: 0.1025, fp: 0.8792, label 0: tensor(205), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2676384747028351 and after 0.3526723086833954 +num_clicks 50 points_length: 508 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 7 +First batch: fn: 0.1461, fp: 0.5674, label 0: tensor(118), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29161372780799866 and after 0.3691548705101013 +num_clicks 50 points_length: 453 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 12 +First batch: fn: 0.1025, fp: 0.5337, label 0: tensor(93), label 1: tensor(36) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.272455096244812 and after 0.37110039591789246 +num_clicks 50 points_length: 444 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 209 +First batch: fn: 0.1025, fp: 0.5211, label 0: tensor(108), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2730560600757599 and after 0.3766590356826782 +num_clicks 50 points_length: 414 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 416 +First batch: fn: 0.1124, fp: 0.4691, label 0: tensor(140), label 1: tensor(44) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2866121828556061 and after 0.38656294345855713 +num_clicks 50 points_length: 374 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 294 +First batch: fn: 0.1250, fp: 0.4003, label 0: tensor(90), label 1: tensor(57) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29448622465133667 and after 0.3849019408226013 +num_clicks 50 points_length: 397 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 435 +First batch: fn: 0.1124, fp: 0.4452, label 0: tensor(135), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29747244715690613 and after 0.39301225543022156 +num_clicks 50 points_length: 362 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 259 +First batch: fn: 0.1306, fp: 0.3778, label 0: tensor(117), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.29914531111717224 and after 0.3934851586818695 +num_clicks 50 points_length: 356 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 419 +First batch: fn: 0.1419, fp: 0.3581, label 0: tensor(78), label 1: tensor(55) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3027167022228241 and after 0.3947969675064087 +epoch: 7/20, iter: 4/42: loss:4.4902: rank:-1 +[23:37:30.474] epoch: 7/20, iter: 4/42: loss:4.4902: rank:-1 +num_clicks 50 points_length: 5276 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(337) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4060509204864502 and after 0.42982202768325806 +num_clicks 50 points_length: 18458 dynamic_size: 10 +filter out voxels: 832 +filter out voxels: 12136 +First batch: fn: 0.6142, fp: 0.0238, label 0: tensor(83), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5012491941452026 and after 0.4995013475418091 +num_clicks 50 points_length: 22925 dynamic_size: 47 +filter out voxels: 372 +filter out voxels: 19662 +First batch: fn: 0.4433, fp: 0.0504, label 0: tensor(88), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5197885036468506 and after 0.5383092164993286 +num_clicks 50 points_length: 20322 dynamic_size: 48 +filter out voxels: 120 +filter out voxels: 17858 +First batch: fn: 0.3728, fp: 0.0713, label 0: tensor(10), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5333549976348877 and after 0.5570793151855469 +num_clicks 50 points_length: 18873 dynamic_size: 17 +filter out voxels: 179 +filter out voxels: 16784 +First batch: fn: 0.3094, fp: 0.1261, label 0: tensor(6), label 1: tensor(330) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5337064266204834 and after 0.5755705237388611 +num_clicks 50 points_length: 18431 dynamic_size: 23 +filter out voxels: 131 +filter out voxels: 16396 +First batch: fn: 0.2616, fp: 0.1295, label 0: tensor(6), label 1: tensor(360) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5441160202026367 and after 0.6078163385391235 +num_clicks 50 points_length: 17475 dynamic_size: 6 +filter out voxels: 61 +filter out voxels: 15660 +First batch: fn: 0.1673, fp: 0.1420, label 0: tensor(5), label 1: tensor(349) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5503708124160767 and after 0.6152642369270325 +num_clicks 50 points_length: 17579 dynamic_size: 15 +filter out voxels: 18 +filter out voxels: 15978 +First batch: fn: 0.1226, fp: 0.1608, label 0: tensor(6), label 1: tensor(311) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5576564073562622 and after 0.633747935295105 +num_clicks 50 points_length: 15399 dynamic_size: 25 +filter out voxels: 7 +filter out voxels: 15075 +First batch: fn: 0.0590, fp: 0.1855, label 0: tensor(17), label 1: tensor(334) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5602656006813049 and after 0.6392332315444946 +num_clicks 50 points_length: 14992 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 14806 +First batch: fn: 0.0249, fp: 0.2131, label 0: tensor(46), label 1: tensor(320) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5612571239471436 and after 0.6461662650108337 +num_clicks 50 points_length: 14501 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 14251 +First batch: fn: 0.0057, fp: 0.2245, label 0: tensor(329), label 1: tensor(126) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5100727081298828 and after 0.6581079363822937 +epoch: 7/20, iter: 5/42: loss:2.0822: rank:-1 +[23:37:46.473] epoch: 7/20, iter: 5/42: loss:2.0822: rank:-1 +num_clicks 50 points_length: 806 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.019394056871533394 and after 0.15997490286827087 +num_clicks 50 points_length: 2977 dynamic_size: 31 +filter out voxels: 740 +filter out voxels: 0 +First batch: fn: 0.6650, fp: 3.0285, label 0: tensor(259), label 1: tensor(117) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09408033639192581 and after 0.6585697531700134 +num_clicks 50 points_length: 675 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 9 +First batch: fn: 0.3846, fp: 0.4529, label 0: tensor(90), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4215579926967621 and after 0.6716798543930054 +num_clicks 50 points_length: 716 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3586, fp: 0.5298, label 0: tensor(139), label 1: tensor(50) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4952235221862793 and after 0.6935844421386719 +num_clicks 50 points_length: 551 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3424, fp: 0.3412, label 0: tensor(106), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28596729040145874 and after 0.732260525226593 +num_clicks 50 points_length: 560 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2035, fp: 0.4913, label 0: tensor(131), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2162022888660431 and after 0.7599139213562012 +num_clicks 50 points_length: 443 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2308, fp: 0.3189, label 0: tensor(124), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2578839957714081 and after 0.765702486038208 +num_clicks 50 points_length: 460 dynamic_size: 15 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1923, fp: 0.3784, label 0: tensor(134), label 1: tensor(31) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19799479842185974 and after 0.7796639204025269 +num_clicks 50 points_length: 414 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2208, fp: 0.2928, label 0: tensor(137), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21164971590042114 and after 0.7779075503349304 +num_clicks 50 points_length: 457 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1861, fp: 0.3809, label 0: tensor(119), label 1: tensor(30) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.20894482731819153 and after 0.7845461368560791 +num_clicks 50 points_length: 426 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.1973, fp: 0.3313, label 0: tensor(119), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.21212363243103027 and after 0.7857085466384888 +epoch: 7/20, iter: 6/42: loss:2.8414: rank:-1 +[23:37:57.149] epoch: 7/20, iter: 6/42: loss:2.8414: rank:-1 +num_clicks 50 points_length: 3409 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3928377330303192 and after 0.4477671682834625 +num_clicks 50 points_length: 7532 dynamic_size: 50 +filter out voxels: 192 +filter out voxels: 51984 +First batch: fn: 0.0693, fp: 0.2824, label 0: tensor(132), label 1: tensor(323) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38290274143218994 and after 0.4473298192024231 +num_clicks 50 points_length: 10727 dynamic_size: 3 +filter out voxels: 62 +filter out voxels: 61051 +First batch: fn: 0.0113, fp: 0.4895, label 0: tensor(396), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4436837434768677 and after 0.5091804265975952 +num_clicks 50 points_length: 5898 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 38545 +First batch: fn: 0.0237, fp: 0.2517, label 0: tensor(204), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43426328897476196 and after 0.5014902949333191 +num_clicks 50 points_length: 7436 dynamic_size: 25 +filter out voxels: 6 +filter out voxels: 35926 +First batch: fn: 0.0108, fp: 0.3364, label 0: tensor(84), label 1: tensor(95) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4191628098487854 and after 0.4888594150543213 +num_clicks 50 points_length: 9040 dynamic_size: 41 +filter out voxels: 14 +filter out voxels: 36090 +First batch: fn: 0.0042, fp: 0.4178, label 0: tensor(210), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44849082827568054 and after 0.5169724822044373 +num_clicks 50 points_length: 6407 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 32521 +First batch: fn: 0.0072, fp: 0.2919, label 0: tensor(185), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4428158700466156 and after 0.511744499206543 +num_clicks 50 points_length: 7137 dynamic_size: 23 +filter out voxels: 4 +filter out voxels: 32219 +First batch: fn: 0.0042, fp: 0.3290, label 0: tensor(132), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44516506791114807 and after 0.5148801207542419 +num_clicks 50 points_length: 6804 dynamic_size: 49 +filter out voxels: 8 +filter out voxels: 32158 +First batch: fn: 0.0061, fp: 0.3116, label 0: tensor(167), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4463382661342621 and after 0.5182867050170898 +num_clicks 50 points_length: 6485 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 31925 +First batch: fn: 0.0062, fp: 0.2966, label 0: tensor(185), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44926688075065613 and after 0.5222092270851135 +num_clicks 50 points_length: 6082 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 31524 +First batch: fn: 0.0071, fp: 0.2768, label 0: tensor(215), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4500315189361572 and after 0.525182843208313 +epoch: 7/20, iter: 7/42: loss:2.8429: rank:-1 +[23:38:09.926] epoch: 7/20, iter: 7/42: loss:2.8429: rank:-1 +num_clicks 50 points_length: 17876 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(415) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.26481738686561584 and after 0.46696311235427856 +num_clicks 50 points_length: 14391 dynamic_size: 34 +filter out voxels: 1975 +filter out voxels: 881 +First batch: fn: 0.5694, fp: 0.2829, label 0: tensor(49), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5114496946334839 and after 0.6000552177429199 +num_clicks 50 points_length: 9956 dynamic_size: 29 +filter out voxels: 2247 +filter out voxels: 1003 +First batch: fn: 0.5215, fp: 0.3911, label 0: tensor(285), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6491768956184387 and after 0.7679694294929504 +num_clicks 50 points_length: 6373 dynamic_size: 10 +filter out voxels: 917 +filter out voxels: 33 +First batch: fn: 0.2440, fp: 0.3334, label 0: tensor(282), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7188239097595215 and after 0.8499633073806763 +num_clicks 50 points_length: 4960 dynamic_size: 49 +filter out voxels: 426 +filter out voxels: 4 +First batch: fn: 0.0711, fp: 0.3068, label 0: tensor(537), label 1: tensor(237) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7582751512527466 and after 0.8706077933311462 +num_clicks 50 points_length: 4251 dynamic_size: 13 +filter out voxels: 3 +filter out voxels: 0 +First batch: fn: 0.0359, fp: 0.3092, label 0: tensor(513), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7569268941879272 and after 0.8794242143630981 +num_clicks 50 points_length: 3974 dynamic_size: 8 +filter out voxels: 1 +filter out voxels: 0 +First batch: fn: 0.0156, fp: 0.3108, label 0: tensor(438), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.757392406463623 and after 0.8821866512298584 +num_clicks 50 points_length: 3720 dynamic_size: 29 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.0148, fp: 0.3144, label 0: tensor(527), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.761600136756897 and after 0.8934074640274048 +num_clicks 50 points_length: 3530 dynamic_size: 22 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.0121, fp: 0.2706, label 0: tensor(521), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7610688209533691 and after 0.897405207157135 +num_clicks 50 points_length: 3748 dynamic_size: 49 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.0140, fp: 0.2366, label 0: tensor(548), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7537486553192139 and after 0.9119359850883484 +num_clicks 50 points_length: 3136 dynamic_size: 25 +filter out voxels: 2 +filter out voxels: 0 +First batch: fn: 0.0191, fp: 0.1928, label 0: tensor(486), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7498618364334106 and after 0.9175090789794922 +epoch: 7/20, iter: 8/42: loss:1.4337: rank:-1 +[23:38:27.830] epoch: 7/20, iter: 8/42: loss:1.4337: rank:-1 +num_clicks 50 points_length: 312 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.230317622423172 and after 0.27885422110557556 +num_clicks 50 points_length: 1550 dynamic_size: 48 +filter out voxels: 5587 +filter out voxels: 845 +First batch: fn: 0.0128, fp: 20.9712, label 0: tensor(215), label 1: tensor(4) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6277432441711426 and after 0.40568938851356506 +num_clicks 50 points_length: 723 dynamic_size: 22 +filter out voxels: 3350 +filter out voxels: 12 +First batch: fn: 0.1442, fp: 11.6250, label 0: tensor(99), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6233035326004028 and after 0.4198024272918701 +num_clicks 50 points_length: 839 dynamic_size: 2 +filter out voxels: 2576 +filter out voxels: 0 +First batch: fn: 0.1314, fp: 8.8269, label 0: tensor(67), label 1: tensor(17) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6133033037185669 and after 0.4344460964202881 +num_clicks 50 points_length: 724 dynamic_size: 14 +filter out voxels: 2761 +filter out voxels: 0 +First batch: fn: 0.0801, fp: 9.4359, label 0: tensor(49), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6187578439712524 and after 0.45006877183914185 +num_clicks 50 points_length: 676 dynamic_size: 7 +filter out voxels: 2463 +filter out voxels: 0 +First batch: fn: 0.0705, fp: 8.5353, label 0: tensor(52), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5906645655632019 and after 0.4548054039478302 +num_clicks 50 points_length: 587 dynamic_size: 23 +filter out voxels: 2712 +filter out voxels: 0 +First batch: fn: 0.1026, fp: 9.1763, label 0: tensor(69), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5753787755966187 and after 0.4806212782859802 +num_clicks 50 points_length: 433 dynamic_size: 48 +filter out voxels: 2628 +filter out voxels: 0 +First batch: fn: 0.1218, fp: 8.8654, label 0: tensor(83), label 1: tensor(22) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6150929927825928 and after 0.4998476505279541 +num_clicks 50 points_length: 405 dynamic_size: 5 +filter out voxels: 2121 +filter out voxels: 0 +First batch: fn: 0.1122, fp: 7.3558, label 0: tensor(51), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5520622134208679 and after 0.4857361912727356 +num_clicks 50 points_length: 442 dynamic_size: 15 +filter out voxels: 2511 +filter out voxels: 0 +First batch: fn: 0.0801, fp: 8.5609, label 0: tensor(40), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5186949968338013 and after 0.4911547899246216 +num_clicks 50 points_length: 429 dynamic_size: 30 +filter out voxels: 2405 +filter out voxels: 0 +First batch: fn: 0.0833, fp: 8.2115, label 0: tensor(78), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.584499716758728 and after 0.5103352665901184 +epoch: 7/20, iter: 9/42: loss:2.4516: rank:-1 +[23:38:37.086] epoch: 7/20, iter: 9/42: loss:2.4516: rank:-1 +num_clicks 50 points_length: 572 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44635313749313354 and after 0.4455496072769165 +num_clicks 50 points_length: 860 dynamic_size: 32 +filter out voxels: 1140 +filter out voxels: 342 +First batch: fn: 0.7754, fp: 0.1519, label 0: tensor(4), label 1: tensor(149) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6773102283477783 and after 0.6401098966598511 +num_clicks 50 points_length: 269 dynamic_size: 3 +filter out voxels: 1323 +filter out voxels: 55 +First batch: fn: 0.6126, fp: 0.1879, label 0: tensor(1), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40709221363067627 and after 0.6836646199226379 +num_clicks 50 points_length: 297 dynamic_size: 2 +filter out voxels: 1461 +filter out voxels: 12 +First batch: fn: 0.4896, fp: 0.2545, label 0: tensor(1), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6612751483917236 and after 0.7507710456848145 +num_clicks 50 points_length: 201 dynamic_size: 40 +filter out voxels: 1081 +filter out voxels: 14 +First batch: fn: 0.3579, fp: 0.3067, label 0: tensor(20), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45635050535202026 and after 0.7568372488021851 +num_clicks 50 points_length: 165 dynamic_size: 44 +filter out voxels: 90 +filter out voxels: 4 +First batch: fn: 0.2906, fp: 0.4774, label 0: tensor(23), label 1: tensor(92) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5827913284301758 and after 0.7392539381980896 +num_clicks 50 points_length: 170 dynamic_size: 1 +filter out voxels: 43 +filter out voxels: 4 +First batch: fn: 0.2358, fp: 0.7257, label 0: tensor(0), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4611241817474365 and after 0.7184075117111206 +num_clicks 50 points_length: 155 dynamic_size: 16 +filter out voxels: 930 +filter out voxels: 6 +First batch: fn: 0.2044, fp: 1.0279, label 0: tensor(11), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5018746256828308 and after 0.7140160799026489 +num_clicks 50 points_length: 208 dynamic_size: 46 +filter out voxels: 131 +filter out voxels: 4 +First batch: fn: 0.1389, fp: 1.0773, label 0: tensor(42), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5528860688209534 and after 0.7327944040298462 +num_clicks 50 points_length: 186 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 5 +First batch: fn: 0.0890, fp: 1.0737, label 0: tensor(11), label 1: tensor(108) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4225154519081116 and after 0.7322297692298889 +num_clicks 50 points_length: 184 dynamic_size: 37 +filter out voxels: 345 +filter out voxels: 5 +First batch: fn: 0.0056, fp: 1.2804, label 0: tensor(79), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5497382879257202 and after 0.7689810991287231 +epoch: 7/20, iter: 10/42: loss:2.0565: rank:-1 +[23:38:46.983] epoch: 7/20, iter: 10/42: loss:2.0565: rank:-1 +num_clicks 50 points_length: 231873 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2453102469444275 and after 0.11356610059738159 +num_clicks 50 points_length: 208622 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8985, fp: 0.0013, label 0: tensor(67), label 1: tensor(546) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.27895376086235046 and after 0.1875571608543396 +num_clicks 50 points_length: 190595 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8202, fp: 0.0018, label 0: tensor(101), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3065791726112366 and after 0.23143263161182404 +num_clicks 50 points_length: 182666 dynamic_size: 38 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7860, fp: 0.0017, label 0: tensor(104), label 1: tensor(538) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.344892293214798 and after 0.28636476397514343 +num_clicks 50 points_length: 177049 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7599, fp: 0.0037, label 0: tensor(85), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38775551319122314 and after 0.31767141819000244 +num_clicks 50 points_length: 169757 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.7286, fp: 0.0035, label 0: tensor(62), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4172244071960449 and after 0.3531162142753601 +num_clicks 50 points_length: 160864 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6893, fp: 0.0045, label 0: tensor(59), label 1: tensor(548) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4425842761993408 and after 0.3852449059486389 +num_clicks 50 points_length: 157166 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6730, fp: 0.0048, label 0: tensor(85), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4398421049118042 and after 0.40138107538223267 +num_clicks 50 points_length: 154794 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6620, fp: 0.0056, label 0: tensor(68), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4553341269493103 and after 0.44661176204681396 +num_clicks 50 points_length: 146757 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6239, fp: 0.0090, label 0: tensor(71), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.461961567401886 and after 0.46797341108322144 +num_clicks 50 points_length: 141415 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5997, fp: 0.0102, label 0: tensor(68), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.46797263622283936 and after 0.4850371181964874 +epoch: 7/20, iter: 11/42: loss:3.8302: rank:-1 +[23:39:09.910] epoch: 7/20, iter: 11/42: loss:3.8302: rank:-1 +num_clicks 50 points_length: 51644 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4246673882007599 and after 0.36828094720840454 +num_clicks 50 points_length: 25343 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9711, fp: 0.0000, label 0: tensor(0), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5534878969192505 and after 0.4598827064037323 +num_clicks 50 points_length: 17854 dynamic_size: 3 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9370, fp: 0.0002, label 0: tensor(18), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5632500052452087 and after 0.4836430549621582 +num_clicks 50 points_length: 16144 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9281, fp: 0.0001, label 0: tensor(20), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5842453837394714 and after 0.5275353789329529 +num_clicks 50 points_length: 15080 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8860, fp: 0.0004, label 0: tensor(72), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5851470828056335 and after 0.541046679019928 +num_clicks 50 points_length: 16070 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8690, fp: 0.0000, label 0: tensor(8), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6292529106140137 and after 0.5629587769508362 +num_clicks 50 points_length: 15853 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.8470, fp: 0.0003, label 0: tensor(50), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6232120394706726 and after 0.5553210973739624 +num_clicks 50 points_length: 18909 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 274 +First batch: fn: 0.8461, fp: 0.0005, label 0: tensor(68), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6173328161239624 and after 0.6015722751617432 +num_clicks 50 points_length: 15879 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 173 +First batch: fn: 0.7952, fp: 0.0005, label 0: tensor(52), label 1: tensor(537) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6491982936859131 and after 0.5952829122543335 +num_clicks 50 points_length: 17804 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 220 +First batch: fn: 0.7961, fp: 0.0008, label 0: tensor(69), label 1: tensor(512) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6320899724960327 and after 0.6202288269996643 +num_clicks 50 points_length: 15754 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 181 +First batch: fn: 0.7696, fp: 0.0014, label 0: tensor(88), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6220200657844543 and after 0.6265129446983337 +epoch: 7/20, iter: 12/42: loss:2.6687: rank:-1 +[23:39:30.406] epoch: 7/20, iter: 12/42: loss:2.6687: rank:-1 +num_clicks 50 points_length: 5143 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(482) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48009228706359863 and after 0.575215220451355 +num_clicks 50 points_length: 3852 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.6878, fp: 0.0025, label 0: tensor(111), label 1: tensor(531) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6104836463928223 and after 0.689659595489502 +num_clicks 50 points_length: 3097 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.5345, fp: 0.0292, label 0: tensor(144), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6297154426574707 and after 0.757689356803894 +num_clicks 50 points_length: 2322 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4282, fp: 0.0363, label 0: tensor(146), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.634294867515564 and after 0.7647433280944824 +num_clicks 50 points_length: 2351 dynamic_size: 30 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4046, fp: 0.0485, label 0: tensor(130), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6282418370246887 and after 0.7944080829620361 +num_clicks 50 points_length: 2068 dynamic_size: 2 +filter out voxels: 8 +filter out voxels: 0 +First batch: fn: 0.3506, fp: 0.0489, label 0: tensor(0), label 1: tensor(498) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6381374597549438 and after 0.8116563558578491 +num_clicks 50 points_length: 2146 dynamic_size: 39 +filter out voxels: 9 +filter out voxels: 0 +First batch: fn: 0.2824, fp: 0.0699, label 0: tensor(21), label 1: tensor(535) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6481166481971741 and after 0.8331104516983032 +num_clicks 50 points_length: 1828 dynamic_size: 44 +filter out voxels: 17 +filter out voxels: 0 +First batch: fn: 0.2367, fp: 0.0883, label 0: tensor(15), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6521852016448975 and after 0.85149085521698 +num_clicks 50 points_length: 1782 dynamic_size: 32 +filter out voxels: 18 +filter out voxels: 0 +First batch: fn: 0.1752, fp: 0.0976, label 0: tensor(77), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6585108041763306 and after 0.8639039993286133 +num_clicks 50 points_length: 1699 dynamic_size: 15 +filter out voxels: 28 +filter out voxels: 0 +First batch: fn: 0.1378, fp: 0.1028, label 0: tensor(9), label 1: tensor(508) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.663160502910614 and after 0.8691806793212891 +num_clicks 50 points_length: 1666 dynamic_size: 27 +filter out voxels: 74 +filter out voxels: 0 +First batch: fn: 0.1142, fp: 0.1140, label 0: tensor(55), label 1: tensor(515) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6621525287628174 and after 0.8770517110824585 +epoch: 7/20, iter: 13/42: loss:1.4811: rank:-1 +[23:39:49.896] epoch: 7/20, iter: 13/42: loss:1.4811: rank:-1 +num_clicks 50 points_length: 2408 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(145) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5412324666976929 and after 0.6690231561660767 +num_clicks 50 points_length: 1942 dynamic_size: 17 +filter out voxels: 544 +filter out voxels: 0 +First batch: fn: 0.0797, fp: 0.7267, label 0: tensor(221), label 1: tensor(86) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8095928430557251 and after 0.7313499450683594 +num_clicks 50 points_length: 1555 dynamic_size: 46 +filter out voxels: 159 +filter out voxels: 0 +First batch: fn: 0.1287, fp: 0.5170, label 0: tensor(188), label 1: tensor(110) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8071314096450806 and after 0.7215936183929443 +num_clicks 50 points_length: 2134 dynamic_size: 30 +filter out voxels: 79 +filter out voxels: 0 +First batch: fn: 0.0158, fp: 0.8704, label 0: tensor(333), label 1: tensor(10) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8186463117599487 and after 0.7952498197555542 +num_clicks 50 points_length: 1085 dynamic_size: 18 +filter out voxels: 12 +filter out voxels: 0 +First batch: fn: 0.0502, fp: 0.4003, label 0: tensor(173), label 1: tensor(39) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8120073080062866 and after 0.8121547698974609 +num_clicks 50 points_length: 985 dynamic_size: 42 +filter out voxels: 6 +filter out voxels: 0 +First batch: fn: 0.0228, fp: 0.3862, label 0: tensor(231), label 1: tensor(26) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8132259845733643 and after 0.8329922556877136 +num_clicks 50 points_length: 834 dynamic_size: 29 +filter out voxels: 6 +filter out voxels: 0 +First batch: fn: 0.0274, fp: 0.3189, label 0: tensor(161), label 1: tensor(41) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8078020215034485 and after 0.8560060262680054 +num_clicks 50 points_length: 667 dynamic_size: 29 +filter out voxels: 6 +filter out voxels: 0 +First batch: fn: 0.0216, fp: 0.2554, label 0: tensor(131), label 1: tensor(37) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8114739656448364 and after 0.877095639705658 +num_clicks 50 points_length: 521 dynamic_size: 48 +filter out voxels: 7 +filter out voxels: 0 +First batch: fn: 0.0399, fp: 0.1765, label 0: tensor(168), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.807249903678894 and after 0.8792771100997925 +num_clicks 50 points_length: 579 dynamic_size: 7 +filter out voxels: 7 +filter out voxels: 0 +First batch: fn: 0.0311, fp: 0.2093, label 0: tensor(103), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8076584339141846 and after 0.8812135457992554 +num_clicks 50 points_length: 590 dynamic_size: 28 +filter out voxels: 6 +filter out voxels: 0 +First batch: fn: 0.0299, fp: 0.2151, label 0: tensor(152), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8086459040641785 and after 0.8910120129585266 +epoch: 7/20, iter: 14/42: loss:1.106: rank:-1 +[23:40:03.204] epoch: 7/20, iter: 14/42: loss:1.106: rank:-1 +num_clicks 50 points_length: 7091 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(235) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6551003456115723 and after 0.6232599020004272 +num_clicks 50 points_length: 2825 dynamic_size: 39 +filter out voxels: 20 +filter out voxels: 0 +First batch: fn: 0.2967, fp: 0.1017, label 0: tensor(226), label 1: tensor(331) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6951963305473328 and after 0.6609060168266296 +num_clicks 50 points_length: 4475 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0344, fp: 0.5967, label 0: tensor(547), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.720291018486023 and after 0.7125366926193237 +num_clicks 50 points_length: 3423 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0130, fp: 0.4698, label 0: tensor(384), label 1: tensor(46) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7618958950042725 and after 0.7523651123046875 +num_clicks 50 points_length: 2761 dynamic_size: 9 +filter out voxels: 0 +filter out voxels: 5 +First batch: fn: 0.0142, fp: 0.3751, label 0: tensor(399), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7701789140701294 and after 0.7727463841438293 +num_clicks 50 points_length: 2350 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 48 +First batch: fn: 0.0087, fp: 0.3227, label 0: tensor(382), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7759652137756348 and after 0.7997291684150696 +num_clicks 50 points_length: 1743 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 52 +First batch: fn: 0.0162, fp: 0.2296, label 0: tensor(362), label 1: tensor(60) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7791561484336853 and after 0.8187155723571777 +num_clicks 50 points_length: 1416 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 52 +First batch: fn: 0.0200, fp: 0.1797, label 0: tensor(208), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7743885517120361 and after 0.8259587287902832 +num_clicks 50 points_length: 1405 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 52 +First batch: fn: 0.0168, fp: 0.1814, label 0: tensor(275), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7782779932022095 and after 0.8372430801391602 +num_clicks 50 points_length: 1303 dynamic_size: 48 +filter out voxels: 0 +filter out voxels: 43 +First batch: fn: 0.0262, fp: 0.1575, label 0: tensor(257), label 1: tensor(74) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7854200601577759 and after 0.844211220741272 +num_clicks 50 points_length: 1440 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 39 +First batch: fn: 0.0144, fp: 0.1887, label 0: tensor(238), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7898122072219849 and after 0.8536673784255981 +epoch: 7/20, iter: 15/42: loss:1.3464: rank:-1 +[23:40:20.138] epoch: 7/20, iter: 15/42: loss:1.3464: rank:-1 +num_clicks 50 points_length: 522 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(90) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3423507511615753 and after 0.3606732487678528 +num_clicks 50 points_length: 2993 dynamic_size: 22 +filter out voxels: 2 +filter out voxels: 2096 +First batch: fn: 0.6840, fp: 0.0497, label 0: tensor(3), label 1: tensor(135) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43257611989974976 and after 0.6230254769325256 +num_clicks 50 points_length: 599 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 131 +First batch: fn: 0.4897, fp: 0.1377, label 0: tensor(11), label 1: tensor(146) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4568566083908081 and after 0.7227472066879272 +num_clicks 50 points_length: 350 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 30 +First batch: fn: 0.3506, fp: 0.1935, label 0: tensor(5), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.533847987651825 and after 0.765505850315094 +num_clicks 50 points_length: 347 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 26 +First batch: fn: 0.2228, fp: 0.2098, label 0: tensor(12), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5384014844894409 and after 0.8140469789505005 +num_clicks 50 points_length: 255 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.1247, fp: 0.2379, label 0: tensor(29), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5723412036895752 and after 0.8350656032562256 +num_clicks 50 points_length: 206 dynamic_size: 5 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.0955, fp: 0.2473, label 0: tensor(4), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5701583623886108 and after 0.8323120474815369 +num_clicks 50 points_length: 226 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 19 +First batch: fn: 0.0763, fp: 0.2577, label 0: tensor(40), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5962936282157898 and after 0.8495553135871887 +num_clicks 50 points_length: 178 dynamic_size: 41 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0748, fp: 0.2472, label 0: tensor(33), label 1: tensor(93) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5931836366653442 and after 0.8426429629325867 +num_clicks 50 points_length: 197 dynamic_size: 14 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0540, fp: 0.2867, label 0: tensor(13), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5622910857200623 and after 0.8466520309448242 +num_clicks 50 points_length: 180 dynamic_size: 40 +filter out voxels: 0 +filter out voxels: 2 +First batch: fn: 0.0474, fp: 0.3066, label 0: tensor(35), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5740847587585449 and after 0.8486977219581604 +epoch: 7/20, iter: 16/42: loss:2.1344: rank:-1 +[23:40:31.291] epoch: 7/20, iter: 16/42: loss:2.1344: rank:-1 +num_clicks 50 points_length: 25868 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(549) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7354414463043213 and after 0.709041953086853 +num_clicks 50 points_length: 12409 dynamic_size: 11 +filter out voxels: 127 +filter out voxels: 9 +First batch: fn: 0.1868, fp: 0.2929, label 0: tensor(505), label 1: tensor(506) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7187559604644775 and after 0.7457352876663208 +num_clicks 50 points_length: 11948 dynamic_size: 2 +filter out voxels: 121 +filter out voxels: 0 +First batch: fn: 0.0371, fp: 0.4248, label 0: tensor(502), label 1: tensor(175) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7469652891159058 and after 0.786186158657074 +num_clicks 50 points_length: 10328 dynamic_size: 16 +filter out voxels: 130 +filter out voxels: 5 +First batch: fn: 0.0193, fp: 0.3799, label 0: tensor(516), label 1: tensor(123) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7709082961082458 and after 0.8168227672576904 +num_clicks 50 points_length: 9331 dynamic_size: 44 +filter out voxels: 94 +filter out voxels: 24 +First batch: fn: 0.0131, fp: 0.3476, label 0: tensor(544), label 1: tensor(128) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.792615532875061 and after 0.83745276927948 +num_clicks 50 points_length: 8958 dynamic_size: 46 +filter out voxels: 77 +filter out voxels: 109 +First batch: fn: 0.0108, fp: 0.3355, label 0: tensor(544), label 1: tensor(101) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8080518841743469 and after 0.8618628978729248 +num_clicks 50 points_length: 8372 dynamic_size: 43 +filter out voxels: 65 +filter out voxels: 89 +First batch: fn: 0.0121, fp: 0.3115, label 0: tensor(541), label 1: tensor(116) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8212404251098633 and after 0.8878952860832214 +num_clicks 50 points_length: 7931 dynamic_size: 43 +filter out voxels: 69 +filter out voxels: 39 +First batch: fn: 0.0101, fp: 0.2965, label 0: tensor(541), label 1: tensor(107) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.850415825843811 and after 0.9044798612594604 +num_clicks 50 points_length: 7679 dynamic_size: 8 +filter out voxels: 83 +filter out voxels: 102 +First batch: fn: 0.0102, fp: 0.2867, label 0: tensor(507), label 1: tensor(125) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8514970541000366 and after 0.9079933166503906 +num_clicks 50 points_length: 7499 dynamic_size: 11 +filter out voxels: 80 +filter out voxels: 50 +First batch: fn: 0.0102, fp: 0.2797, label 0: tensor(511), label 1: tensor(106) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8561915159225464 and after 0.913672685623169 +num_clicks 50 points_length: 7159 dynamic_size: 18 +filter out voxels: 73 +filter out voxels: 76 +First batch: fn: 0.0118, fp: 0.2650, label 0: tensor(518), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.8542193174362183 and after 0.9155619144439697 +epoch: 7/20, iter: 17/42: loss:1.4228: rank:-1 +[23:40:52.395] epoch: 7/20, iter: 17/42: loss:1.4228: rank:-1 +num_clicks 50 points_length: 211 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(52) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0631691962480545 and after 0.0810970738530159 +num_clicks 50 points_length: 15616 dynamic_size: 7 +filter out voxels: 13281 +filter out voxels: 1 +First batch: fn: 0.1185, fp: 73.8910, label 0: tensor(356), label 1: tensor(8) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05360106751322746 and after 0.07585963606834412 +num_clicks 50 points_length: 9416 dynamic_size: 31 +filter out voxels: 8572 +filter out voxels: 300 +First batch: fn: 0.2133, fp: 44.4123, label 0: tensor(134), label 1: tensor(23) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.05915384739637375 and after 0.08638240396976471 +num_clicks 50 points_length: 9318 dynamic_size: 45 +filter out voxels: 8851 +filter out voxels: 156 +First batch: fn: 0.1943, fp: 43.9668, label 0: tensor(116), label 1: tensor(24) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0672047957777977 and after 0.09940969198942184 +num_clicks 50 points_length: 8890 dynamic_size: 45 +filter out voxels: 8672 +filter out voxels: 1 +First batch: fn: 0.1754, fp: 41.9573, label 0: tensor(96), label 1: tensor(14) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0709746703505516 and after 0.1009662076830864 +num_clicks 50 points_length: 8023 dynamic_size: 50 +filter out voxels: 7910 +filter out voxels: 18 +First batch: fn: 0.1896, fp: 37.8341, label 0: tensor(84), label 1: tensor(21) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.07771982252597809 and after 0.12422866374254227 +num_clicks 50 points_length: 8063 dynamic_size: 26 +filter out voxels: 7952 +filter out voxels: 1 +First batch: fn: 0.1611, fp: 38.0521, label 0: tensor(67), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.0764487236738205 and after 0.10676541924476624 +num_clicks 50 points_length: 8015 dynamic_size: 37 +filter out voxels: 7907 +filter out voxels: 12 +First batch: fn: 0.1706, fp: 37.8152, label 0: tensor(63), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08320195972919464 and after 0.12679745256900787 +num_clicks 50 points_length: 8128 dynamic_size: 12 +filter out voxels: 8020 +filter out voxels: 2 +First batch: fn: 0.1659, fp: 38.3554, label 0: tensor(43), label 1: tensor(19) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08225516974925995 and after 0.11905394494533539 +num_clicks 50 points_length: 8541 dynamic_size: 30 +filter out voxels: 8434 +filter out voxels: 6 +First batch: fn: 0.1517, fp: 40.3270, label 0: tensor(54), label 1: tensor(18) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08300535380840302 and after 0.12283821403980255 +num_clicks 50 points_length: 8315 dynamic_size: 15 +filter out voxels: 8206 +filter out voxels: 6 +First batch: fn: 0.1706, fp: 39.2370, label 0: tensor(48), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.08637197315692902 and after 0.1333755999803543 +epoch: 7/20, iter: 18/42: loss:4.7278: rank:-1 +[23:41:03.860] epoch: 7/20, iter: 18/42: loss:4.7278: rank:-1 +num_clicks 50 points_length: 31065 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(532) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.19962191581726074 and after 0.3597615361213684 +num_clicks 50 points_length: 29872 dynamic_size: 10 +filter out voxels: 76 +filter out voxels: 99 +First batch: fn: 0.6020, fp: 1.2817, label 0: tensor(508), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36480894684791565 and after 0.46703559160232544 +num_clicks 50 points_length: 27735 dynamic_size: 39 +filter out voxels: 536 +filter out voxels: 63 +First batch: fn: 0.4036, fp: 1.3741, label 0: tensor(528), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39856770634651184 and after 0.517895519733429 +num_clicks 50 points_length: 27702 dynamic_size: 15 +filter out voxels: 690 +filter out voxels: 61 +First batch: fn: 0.2879, fp: 1.4171, label 0: tensor(513), label 1: tensor(502) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40778428316116333 and after 0.5608201026916504 +num_clicks 50 points_length: 29545 dynamic_size: 12 +filter out voxels: 592 +filter out voxels: 109 +First batch: fn: 0.1608, fp: 1.3593, label 0: tensor(508), label 1: tensor(433) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.43755123019218445 and after 0.5849676132202148 +num_clicks 50 points_length: 32436 dynamic_size: 11 +filter out voxels: 390 +filter out voxels: 126 +First batch: fn: 0.1089, fp: 1.2536, label 0: tensor(511), label 1: tensor(488) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4547066390514374 and after 0.6043014526367188 +num_clicks 50 points_length: 34437 dynamic_size: 9 +filter out voxels: 388 +filter out voxels: 133 +First batch: fn: 0.0343, fp: 1.2217, label 0: tensor(509), label 1: tensor(199) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45052358508110046 and after 0.6185322999954224 +num_clicks 50 points_length: 31490 dynamic_size: 26 +filter out voxels: 193 +filter out voxels: 292 +First batch: fn: 0.0204, fp: 0.9540, label 0: tensor(526), label 1: tensor(154) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4803057909011841 and after 0.6412578821182251 +num_clicks 50 points_length: 24896 dynamic_size: 40 +filter out voxels: 51 +filter out voxels: 231 +First batch: fn: 0.0100, fp: 0.7603, label 0: tensor(539), label 1: tensor(99) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5011482238769531 and after 0.6656590104103088 +num_clicks 50 points_length: 19537 dynamic_size: 4 +filter out voxels: 1 +filter out voxels: 212 +First batch: fn: 0.0080, fp: 0.5965, label 0: tensor(504), label 1: tensor(104) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5291802883148193 and after 0.6809265613555908 +num_clicks 50 points_length: 16237 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 250 +First batch: fn: 0.0066, fp: 0.4959, label 0: tensor(508), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5247980356216431 and after 0.6890193223953247 +epoch: 7/20, iter: 19/42: loss:2.2869: rank:-1 +[23:41:27.204] epoch: 7/20, iter: 19/42: loss:2.2869: rank:-1 +num_clicks 50 points_length: 17434 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.49002915620803833 and after 0.5208640694618225 +num_clicks 50 points_length: 13048 dynamic_size: 24 +filter out voxels: 255 +filter out voxels: 0 +First batch: fn: 0.1690, fp: 0.5794, label 0: tensor(375), label 1: tensor(511) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5432131290435791 and after 0.5990625619888306 +num_clicks 50 points_length: 14977 dynamic_size: 12 +filter out voxels: 19 +filter out voxels: 0 +First batch: fn: 0.0141, fp: 0.8450, label 0: tensor(512), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6752209663391113 and after 0.6563701033592224 +num_clicks 50 points_length: 11920 dynamic_size: 21 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0177, fp: 0.6660, label 0: tensor(520), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7176929712295532 and after 0.6937122344970703 +num_clicks 50 points_length: 11040 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0111, fp: 0.6221, label 0: tensor(524), label 1: tensor(83) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7157729268074036 and after 0.714032769203186 +num_clicks 50 points_length: 10531 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 12 +First batch: fn: 0.0083, fp: 0.5957, label 0: tensor(508), label 1: tensor(70) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7133097648620605 and after 0.7275327444076538 +num_clicks 50 points_length: 10239 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 20 +First batch: fn: 0.0076, fp: 0.5797, label 0: tensor(517), label 1: tensor(71) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.71152263879776 and after 0.7414880990982056 +num_clicks 50 points_length: 9555 dynamic_size: 8 +filter out voxels: 0 +filter out voxels: 48 +First batch: fn: 0.0102, fp: 0.5379, label 0: tensor(508), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.709679365158081 and after 0.7707996368408203 +num_clicks 50 points_length: 8859 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 45 +First batch: fn: 0.0098, fp: 0.4983, label 0: tensor(516), label 1: tensor(75) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7095934152603149 and after 0.788698673248291 +num_clicks 50 points_length: 8611 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 32 +First batch: fn: 0.0135, fp: 0.4804, label 0: tensor(527), label 1: tensor(100) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7176276445388794 and after 0.7938027381896973 +num_clicks 50 points_length: 8417 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 58 +First batch: fn: 0.0168, fp: 0.4660, label 0: tensor(526), label 1: tensor(138) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7080592513084412 and after 0.7979310750961304 +epoch: 7/20, iter: 20/42: loss:1.5162: rank:-1 +[23:41:47.445] epoch: 7/20, iter: 20/42: loss:1.5162: rank:-1 +num_clicks 50 points_length: 11213 dynamic_size: 46 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(505) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3186585009098053 and after 0.4580678939819336 +num_clicks 50 points_length: 9166 dynamic_size: 20 +filter out voxels: 387 +filter out voxels: 5749 +First batch: fn: 0.8428, fp: 0.0827, label 0: tensor(31), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4025570750236511 and after 0.5055122375488281 +num_clicks 50 points_length: 13857 dynamic_size: 3 +filter out voxels: 209 +filter out voxels: 8971 +First batch: fn: 0.7011, fp: 0.1932, label 0: tensor(111), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5101456642150879 and after 0.6241476535797119 +num_clicks 50 points_length: 6511 dynamic_size: 46 +filter out voxels: 70 +filter out voxels: 3735 +First batch: fn: 0.6204, fp: 0.2127, label 0: tensor(13), label 1: tensor(453) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.582195520401001 and after 0.6908453106880188 +num_clicks 50 points_length: 3829 dynamic_size: 31 +filter out voxels: 97 +filter out voxels: 1396 +First batch: fn: 0.5545, fp: 0.2362, label 0: tensor(9), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6526316404342651 and after 0.7363725900650024 +num_clicks 50 points_length: 2364 dynamic_size: 10 +filter out voxels: 90 +filter out voxels: 25 +First batch: fn: 0.5038, fp: 0.2453, label 0: tensor(2), label 1: tensor(368) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6601260900497437 and after 0.7486910820007324 +num_clicks 50 points_length: 2134 dynamic_size: 38 +filter out voxels: 63 +filter out voxels: 0 +First batch: fn: 0.4931, fp: 0.2236, label 0: tensor(11), label 1: tensor(368) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6637699007987976 and after 0.7631268501281738 +num_clicks 50 points_length: 1990 dynamic_size: 32 +filter out voxels: 42 +filter out voxels: 0 +First batch: fn: 0.4679, fp: 0.2148, label 0: tensor(11), label 1: tensor(414) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6678897142410278 and after 0.7778701782226562 +num_clicks 50 points_length: 1776 dynamic_size: 9 +filter out voxels: 40 +filter out voxels: 0 +First batch: fn: 0.4422, fp: 0.2118, label 0: tensor(4), label 1: tensor(433) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6815122961997986 and after 0.7916772365570068 +num_clicks 50 points_length: 1702 dynamic_size: 2 +filter out voxels: 175 +filter out voxels: 0 +First batch: fn: 0.4171, fp: 0.1956, label 0: tensor(1), label 1: tensor(434) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6826497316360474 and after 0.8080602884292603 +num_clicks 50 points_length: 1656 dynamic_size: 10 +filter out voxels: 177 +filter out voxels: 0 +First batch: fn: 0.3813, fp: 0.1837, label 0: tensor(5), label 1: tensor(346) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6816721558570862 and after 0.8163677453994751 +epoch: 7/20, iter: 21/42: loss:1.8119: rank:-1 +[23:42:04.363] epoch: 7/20, iter: 21/42: loss:1.8119: rank:-1 +num_clicks 50 points_length: 42270 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5885311365127563 and after 0.6546788215637207 +num_clicks 50 points_length: 32871 dynamic_size: 17 +filter out voxels: 4708 +filter out voxels: 0 +First batch: fn: 0.0462, fp: 0.8255, label 0: tensor(517), label 1: tensor(332) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6520286202430725 and after 0.722556471824646 +num_clicks 50 points_length: 27759 dynamic_size: 47 +filter out voxels: 4592 +filter out voxels: 56 +First batch: fn: 0.0080, fp: 0.7033, label 0: tensor(547), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6696932315826416 and after 0.7724593877792358 +num_clicks 50 points_length: 20593 dynamic_size: 6 +filter out voxels: 3219 +filter out voxels: 122 +First batch: fn: 0.0150, fp: 0.4722, label 0: tensor(506), label 1: tensor(142) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6969786882400513 and after 0.7923126816749573 +num_clicks 50 points_length: 19285 dynamic_size: 39 +filter out voxels: 3008 +filter out voxels: 197 +First batch: fn: 0.0071, fp: 0.4492, label 0: tensor(539), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7150452136993408 and after 0.8071572780609131 +num_clicks 50 points_length: 16248 dynamic_size: 32 +filter out voxels: 2153 +filter out voxels: 296 +First batch: fn: 0.0066, fp: 0.3778, label 0: tensor(532), label 1: tensor(91) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7583143711090088 and after 0.8354099988937378 +num_clicks 50 points_length: 14611 dynamic_size: 17 +filter out voxels: 1685 +filter out voxels: 151 +First batch: fn: 0.0057, fp: 0.3399, label 0: tensor(517), label 1: tensor(78) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7634693384170532 and after 0.8395501971244812 +num_clicks 50 points_length: 13861 dynamic_size: 39 +filter out voxels: 1466 +filter out voxels: 203 +First batch: fn: 0.0121, fp: 0.3159, label 0: tensor(538), label 1: tensor(103) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7723104357719421 and after 0.8511554598808289 +num_clicks 50 points_length: 13252 dynamic_size: 14 +filter out voxels: 1434 +filter out voxels: 199 +First batch: fn: 0.0055, fp: 0.3080, label 0: tensor(514), label 1: tensor(84) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7813646793365479 and after 0.8637560606002808 +num_clicks 50 points_length: 12676 dynamic_size: 35 +filter out voxels: 1310 +filter out voxels: 155 +First batch: fn: 0.0067, fp: 0.2932, label 0: tensor(534), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7919435501098633 and after 0.8785799145698547 +num_clicks 50 points_length: 11792 dynamic_size: 32 +filter out voxels: 1229 +filter out voxels: 165 +First batch: fn: 0.0051, fp: 0.2739, label 0: tensor(531), label 1: tensor(88) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7999593019485474 and after 0.8868650197982788 +epoch: 7/20, iter: 22/42: loss:1.3441: rank:-1 +[23:42:24.226] epoch: 7/20, iter: 22/42: loss:1.3441: rank:-1 +num_clicks 50 points_length: 95203 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(529) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4139447808265686 and after 0.3974202871322632 +num_clicks 50 points_length: 51584 dynamic_size: 4 +filter out voxels: 10 +filter out voxels: 70007 +First batch: fn: 0.4856, fp: 0.0562, label 0: tensor(501), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.45760318636894226 and after 0.4902476370334625 +num_clicks 50 points_length: 36408 dynamic_size: 47 +filter out voxels: 50 +filter out voxels: 74904 +First batch: fn: 0.3271, fp: 0.0553, label 0: tensor(504), label 1: tensor(543) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48372477293014526 and after 0.5548809170722961 +num_clicks 50 points_length: 27931 dynamic_size: 33 +filter out voxels: 57 +filter out voxels: 77553 +First batch: fn: 0.2442, fp: 0.0491, label 0: tensor(503), label 1: tensor(530) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5135431885719299 and after 0.6117197275161743 +num_clicks 50 points_length: 22830 dynamic_size: 43 +filter out voxels: 77 +filter out voxels: 74708 +First batch: fn: 0.1826, fp: 0.0572, label 0: tensor(510), label 1: tensor(533) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5522735118865967 and after 0.6427643299102783 +num_clicks 50 points_length: 20354 dynamic_size: 19 +filter out voxels: 103 +filter out voxels: 69991 +First batch: fn: 0.1387, fp: 0.0751, label 0: tensor(510), label 1: tensor(509) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5585892796516418 and after 0.666793167591095 +num_clicks 50 points_length: 18989 dynamic_size: 2 +filter out voxels: 160 +filter out voxels: 67382 +First batch: fn: 0.1081, fp: 0.0914, label 0: tensor(502), label 1: tensor(500) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5663862228393555 and after 0.7001680731773376 +num_clicks 50 points_length: 15959 dynamic_size: 38 +filter out voxels: 169 +filter out voxels: 63820 +First batch: fn: 0.0695, fp: 0.0981, label 0: tensor(522), label 1: tensor(516) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5835751891136169 and after 0.7359736561775208 +num_clicks 50 points_length: 14171 dynamic_size: 8 +filter out voxels: 133 +filter out voxels: 59686 +First batch: fn: 0.0330, fp: 0.1158, label 0: tensor(507), label 1: tensor(501) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5993258953094482 and after 0.7398104667663574 +num_clicks 50 points_length: 15735 dynamic_size: 48 +filter out voxels: 119 +filter out voxels: 57039 +First batch: fn: 0.0152, fp: 0.1501, label 0: tensor(541), label 1: tensor(348) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6131711602210999 and after 0.7629522681236267 +num_clicks 50 points_length: 15194 dynamic_size: 46 +filter out voxels: 100 +filter out voxels: 58648 +First batch: fn: 0.0094, fp: 0.1502, label 0: tensor(545), label 1: tensor(205) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6292726397514343 and after 0.7884150147438049 +epoch: 7/20, iter: 23/42: loss:2.516: rank:-1 +[23:42:48.859] epoch: 7/20, iter: 23/42: loss:2.516: rank:-1 +num_clicks 50 points_length: 7054 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(349) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2787165641784668 and after 0.5583924651145935 +num_clicks 50 points_length: 5839 dynamic_size: 23 +filter out voxels: 1121 +filter out voxels: 46 +First batch: fn: 0.0663, fp: 0.7044, label 0: tensor(521), label 1: tensor(147) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4136906564235687 and after 0.6523863673210144 +num_clicks 50 points_length: 5238 dynamic_size: 44 +filter out voxels: 568 +filter out voxels: 0 +First batch: fn: 0.0103, fp: 0.6810, label 0: tensor(543), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4609760642051697 and after 0.691217303276062 +num_clicks 50 points_length: 3982 dynamic_size: 17 +filter out voxels: 309 +filter out voxels: 0 +First batch: fn: 0.0070, fp: 0.5185, label 0: tensor(517), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5465691685676575 and after 0.7369271516799927 +num_clicks 50 points_length: 3289 dynamic_size: 7 +filter out voxels: 75 +filter out voxels: 0 +First batch: fn: 0.0077, fp: 0.4264, label 0: tensor(507), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5835455060005188 and after 0.7582957148551941 +num_clicks 50 points_length: 3000 dynamic_size: 1 +filter out voxels: 65 +filter out voxels: 0 +First batch: fn: 0.0090, fp: 0.3870, label 0: tensor(531), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6025316715240479 and after 0.7781707048416138 +num_clicks 50 points_length: 2808 dynamic_size: 10 +filter out voxels: 59 +filter out voxels: 0 +First batch: fn: 0.0112, fp: 0.3594, label 0: tensor(510), label 1: tensor(56) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6086198091506958 and after 0.7951717972755432 +num_clicks 50 points_length: 2629 dynamic_size: 6 +filter out voxels: 53 +filter out voxels: 0 +First batch: fn: 0.0152, fp: 0.3318, label 0: tensor(411), label 1: tensor(80) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6087297201156616 and after 0.8011343479156494 +num_clicks 50 points_length: 2710 dynamic_size: 38 +filter out voxels: 40 +filter out voxels: 0 +First batch: fn: 0.0111, fp: 0.3466, label 0: tensor(436), label 1: tensor(58) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6167812347412109 and after 0.812823474407196 +num_clicks 50 points_length: 2470 dynamic_size: 35 +filter out voxels: 32 +filter out voxels: 0 +First batch: fn: 0.0127, fp: 0.3133, label 0: tensor(426), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6181973218917847 and after 0.8193429708480835 +num_clicks 50 points_length: 2412 dynamic_size: 37 +filter out voxels: 16 +filter out voxels: 0 +First batch: fn: 0.0127, fp: 0.3057, label 0: tensor(408), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6333387494087219 and after 0.8303998708724976 +epoch: 7/20, iter: 24/42: loss:1.7301: rank:-1 +[23:43:05.679] epoch: 7/20, iter: 24/42: loss:1.7301: rank:-1 +num_clicks 50 points_length: 4515 dynamic_size: 42 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(441) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.677760660648346 and after 0.6869245767593384 +num_clicks 50 points_length: 2057 dynamic_size: 34 +filter out voxels: 0 +filter out voxels: 30 +First batch: fn: 0.5644, fp: 0.0534, label 0: tensor(2), label 1: tensor(384) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7130972743034363 and after 0.7544129490852356 +num_clicks 50 points_length: 1675 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4539, fp: 0.0766, label 0: tensor(5), label 1: tensor(336) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7468695640563965 and after 0.7678989171981812 +num_clicks 50 points_length: 1691 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.4204, fp: 0.0842, label 0: tensor(10), label 1: tensor(353) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7751201391220093 and after 0.7809637784957886 +num_clicks 50 points_length: 1518 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3970, fp: 0.1007, label 0: tensor(0), label 1: tensor(231) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7659456729888916 and after 0.7866161465644836 +num_clicks 50 points_length: 1414 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3879, fp: 0.1124, label 0: tensor(0), label 1: tensor(267) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7698069214820862 and after 0.8029681444168091 +num_clicks 50 points_length: 1334 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3437, fp: 0.1264, label 0: tensor(5), label 1: tensor(355) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.770768404006958 and after 0.8140548467636108 +num_clicks 50 points_length: 1134 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.3320, fp: 0.1298, label 0: tensor(4), label 1: tensor(253) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7642015218734741 and after 0.8320581912994385 +num_clicks 50 points_length: 1218 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2678, fp: 0.1335, label 0: tensor(11), label 1: tensor(210) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7717229127883911 and after 0.8412708044052124 +num_clicks 50 points_length: 1139 dynamic_size: 32 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2490, fp: 0.1347, label 0: tensor(7), label 1: tensor(269) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.771294116973877 and after 0.8383927345275879 +num_clicks 50 points_length: 1193 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.2360, fp: 0.1571, label 0: tensor(3), label 1: tensor(305) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7771958112716675 and after 0.834587574005127 +epoch: 7/20, iter: 25/42: loss:1.1302: rank:-1 +[23:43:21.387] epoch: 7/20, iter: 25/42: loss:1.1302: rank:-1 +num_clicks 50 points_length: 957 dynamic_size: 24 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(114) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1501365453004837 and after 0.42955920100212097 +num_clicks 50 points_length: 934 dynamic_size: 22 +filter out voxels: 61 +filter out voxels: 7623 +First batch: fn: 0.2417, fp: 0.4486, label 0: tensor(122), label 1: tensor(87) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3326253592967987 and after 0.45456501841545105 +num_clicks 50 points_length: 809 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 8299 +First batch: fn: 0.0414, fp: 0.5565, label 0: tensor(118), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3297981321811676 and after 0.43027886748313904 +num_clicks 50 points_length: 1062 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 10196 +First batch: fn: 0.0133, fp: 0.7716, label 0: tensor(181), label 1: tensor(16) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.376239150762558 and after 0.47570154070854187 +num_clicks 50 points_length: 609 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 9183 +First batch: fn: 0.0362, fp: 0.4139, label 0: tensor(88), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35265231132507324 and after 0.4764590263366699 +num_clicks 50 points_length: 549 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 11976 +First batch: fn: 0.0414, fp: 0.3644, label 0: tensor(126), label 1: tensor(38) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.39116913080215454 and after 0.48433613777160645 +num_clicks 50 points_length: 559 dynamic_size: 50 +filter out voxels: 0 +filter out voxels: 9763 +First batch: fn: 0.0296, fp: 0.3836, label 0: tensor(99), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35940021276474 and after 0.49812111258506775 +num_clicks 50 points_length: 459 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 10442 +First batch: fn: 0.0273, fp: 0.3119, label 0: tensor(132), label 1: tensor(32) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40390095114707947 and after 0.5115848779678345 +num_clicks 50 points_length: 385 dynamic_size: 25 +filter out voxels: 0 +filter out voxels: 8888 +First batch: fn: 0.0399, fp: 0.2446, label 0: tensor(80), label 1: tensor(27) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3747115135192871 and after 0.49424052238464355 +num_clicks 50 points_length: 369 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 14130 +First batch: fn: 0.0392, fp: 0.2336, label 0: tensor(100), label 1: tensor(40) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3985682427883148 and after 0.5099831819534302 +num_clicks 50 points_length: 360 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 9949 +First batch: fn: 0.0399, fp: 0.2262, label 0: tensor(61), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.32660993933677673 and after 0.48715662956237793 +epoch: 7/20, iter: 26/42: loss:3.0731: rank:-1 +[23:43:31.541] epoch: 7/20, iter: 26/42: loss:3.0731: rank:-1 +num_clicks 50 points_length: 31370 dynamic_size: 36 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(536) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2777040898799896 and after 0.22603432834148407 +num_clicks 50 points_length: 29663 dynamic_size: 27 +filter out voxels: 1021 +filter out voxels: 26 +First batch: fn: 0.7895, fp: 0.1561, label 0: tensor(52), label 1: tensor(523) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4248647689819336 and after 0.37281322479248047 +num_clicks 50 points_length: 29436 dynamic_size: 26 +filter out voxels: 1169 +filter out voxels: 0 +First batch: fn: 0.6607, fp: 0.2777, label 0: tensor(98), label 1: tensor(517) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4618351459503174 and after 0.43192657828330994 +num_clicks 50 points_length: 34045 dynamic_size: 46 +filter out voxels: 1117 +filter out voxels: 0 +First batch: fn: 0.5859, fp: 0.4993, label 0: tensor(46), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5185941457748413 and after 0.4886091351509094 +num_clicks 50 points_length: 32320 dynamic_size: 37 +filter out voxels: 748 +filter out voxels: 0 +First batch: fn: 0.5091, fp: 0.5212, label 0: tensor(58), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5329060554504395 and after 0.5321719646453857 +num_clicks 50 points_length: 31044 dynamic_size: 8 +filter out voxels: 1087 +filter out voxels: 0 +First batch: fn: 0.4449, fp: 0.5448, label 0: tensor(171), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5391032695770264 and after 0.5794858932495117 +num_clicks 50 points_length: 29250 dynamic_size: 38 +filter out voxels: 494 +filter out voxels: 0 +First batch: fn: 0.3689, fp: 0.5635, label 0: tensor(180), label 1: tensor(520) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5461964011192322 and after 0.6077055931091309 +num_clicks 50 points_length: 28169 dynamic_size: 10 +filter out voxels: 400 +filter out voxels: 0 +First batch: fn: 0.3059, fp: 0.5921, label 0: tensor(156), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5568961501121521 and after 0.6400918364524841 +num_clicks 50 points_length: 27543 dynamic_size: 43 +filter out voxels: 313 +filter out voxels: 0 +First batch: fn: 0.2592, fp: 0.6188, label 0: tensor(320), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5540375113487244 and after 0.6700923442840576 +num_clicks 50 points_length: 25560 dynamic_size: 27 +filter out voxels: 38 +filter out voxels: 0 +First batch: fn: 0.2154, fp: 0.5994, label 0: tensor(203), label 1: tensor(507) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.556507408618927 and after 0.6902385950088501 +num_clicks 50 points_length: 27299 dynamic_size: 5 +filter out voxels: 151 +filter out voxels: 0 +First batch: fn: 0.1691, fp: 0.7011, label 0: tensor(143), label 1: tensor(503) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5829883217811584 and after 0.7038848400115967 +epoch: 7/20, iter: 27/42: loss:2.2905: rank:-1 +[23:43:49.996] epoch: 7/20, iter: 27/42: loss:2.2905: rank:-1 +num_clicks 50 points_length: 3126 dynamic_size: 13 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(240) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.33590227365493774 and after 0.5508017539978027 +num_clicks 50 points_length: 3119 dynamic_size: 27 +filter out voxels: 538 +filter out voxels: 238 +First batch: fn: 0.1404, fp: 0.8573, label 0: tensor(507), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6091141104698181 and after 0.6750199794769287 +num_clicks 50 points_length: 1578 dynamic_size: 1 +filter out voxels: 0 +filter out voxels: 106 +First batch: fn: 0.3666, fp: 0.1382, label 0: tensor(146), label 1: tensor(198) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5353056192398071 and after 0.7355200052261353 +num_clicks 50 points_length: 2351 dynamic_size: 11 +filter out voxels: 0 +filter out voxels: 291 +First batch: fn: 0.0208, fp: 0.7313, label 0: tensor(524), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7467528581619263 and after 0.7823010087013245 +num_clicks 50 points_length: 986 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 19 +First batch: fn: 0.1206, fp: 0.1948, label 0: tensor(198), label 1: tensor(161) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7168627977371216 and after 0.7966291904449463 +num_clicks 50 points_length: 907 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 33 +First batch: fn: 0.1542, fp: 0.1360, label 0: tensor(155), label 1: tensor(105) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7091199159622192 and after 0.813985288143158 +num_clicks 50 points_length: 839 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 38 +First batch: fn: 0.0531, fp: 0.2153, label 0: tensor(177), label 1: tensor(82) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7388817071914673 and after 0.8158366680145264 +num_clicks 50 points_length: 995 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 39 +First batch: fn: 0.0230, fp: 0.2953, label 0: tensor(213), label 1: tensor(33) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.752694308757782 and after 0.7986104488372803 +num_clicks 50 points_length: 1398 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 41 +First batch: fn: 0.0077, fp: 0.4395, label 0: tensor(293), label 1: tensor(20) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.751051664352417 and after 0.8125614523887634 +num_clicks 50 points_length: 1255 dynamic_size: 31 +filter out voxels: 0 +filter out voxels: 43 +First batch: fn: 0.0160, fp: 0.3855, label 0: tensor(258), label 1: tensor(25) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7437825798988342 and after 0.8387774229049683 +num_clicks 50 points_length: 852 dynamic_size: 27 +filter out voxels: 0 +filter out voxels: 40 +First batch: fn: 0.0186, fp: 0.2540, label 0: tensor(254), label 1: tensor(34) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7622661590576172 and after 0.8620574474334717 +epoch: 7/20, iter: 28/42: loss:1.568: rank:-1 +[23:44:04.160] epoch: 7/20, iter: 28/42: loss:1.568: rank:-1 +num_clicks 50 points_length: 25213 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34593039751052856 and after 0.22943273186683655 +num_clicks 50 points_length: 18932 dynamic_size: 28 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9757, fp: 0.0007, label 0: tensor(137), label 1: tensor(528) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.38635313510894775 and after 0.295827716588974 +num_clicks 50 points_length: 15846 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9863, fp: 0.0002, label 0: tensor(38), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.40055879950523376 and after 0.34297144412994385 +num_clicks 50 points_length: 15072 dynamic_size: 47 +filter out voxels: 0 +filter out voxels: 1 +First batch: fn: 0.9725, fp: 0.0005, label 0: tensor(120), label 1: tensor(547) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4083316922187805 and after 0.4148845672607422 +num_clicks 50 points_length: 10720 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9718, fp: 0.0004, label 0: tensor(86), label 1: tensor(504) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44963639974594116 and after 0.44574034214019775 +num_clicks 50 points_length: 10182 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9514, fp: 0.0002, label 0: tensor(56), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4740922152996063 and after 0.4642826318740845 +num_clicks 50 points_length: 8782 dynamic_size: 26 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9520, fp: 0.0007, label 0: tensor(130), label 1: tensor(526) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.47881191968917847 and after 0.47714686393737793 +num_clicks 50 points_length: 10126 dynamic_size: 19 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9317, fp: 0.0002, label 0: tensor(68), label 1: tensor(519) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.49753785133361816 and after 0.475082129240036 +num_clicks 50 points_length: 11146 dynamic_size: 22 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.9273, fp: 0.0002, label 0: tensor(51), label 1: tensor(522) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.4944291114807129 and after 0.48656439781188965 +num_clicks 50 points_length: 10731 dynamic_size: 45 +filter out voxels: 0 +filter out voxels: 17 +First batch: fn: 0.9178, fp: 0.0004, label 0: tensor(78), label 1: tensor(545) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.48427465558052063 and after 0.49979615211486816 +num_clicks 50 points_length: 10644 dynamic_size: 10 +filter out voxels: 0 +filter out voxels: 19 +First batch: fn: 0.9031, fp: 0.0011, label 0: tensor(166), label 1: tensor(510) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.44394028186798096 and after 0.5099054574966431 +epoch: 7/20, iter: 29/42: loss:3.4348: rank:-1 +[23:44:29.016] epoch: 7/20, iter: 29/42: loss:3.4348: rank:-1 +num_clicks 50 points_length: 2061 dynamic_size: 37 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(199) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.5816311240196228 and after 0.6056077480316162 +num_clicks 50 points_length: 1792 dynamic_size: 47 +filter out voxels: 18 +filter out voxels: 22 +First batch: fn: 0.5931, fp: 0.0186, label 0: tensor(1), label 1: tensor(521) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6020767092704773 and after 0.7726608514785767 +num_clicks 50 points_length: 1351 dynamic_size: 50 +filter out voxels: 284 +filter out voxels: 0 +First batch: fn: 0.1490, fp: 0.2300, label 0: tensor(78), label 1: tensor(265) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6309025287628174 and after 0.8141539692878723 +num_clicks 50 points_length: 1210 dynamic_size: 9 +filter out voxels: 4 +filter out voxels: 0 +First batch: fn: 0.0406, fp: 0.2567, label 0: tensor(239), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6859680414199829 and after 0.7873477935791016 +num_clicks 50 points_length: 1286 dynamic_size: 7 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0133, fp: 0.4146, label 0: tensor(290), label 1: tensor(69) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7084325551986694 and after 0.8148317337036133 +num_clicks 50 points_length: 921 dynamic_size: 39 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0122, fp: 0.3932, label 0: tensor(331), label 1: tensor(67) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6476448178291321 and after 0.8152209520339966 +num_clicks 50 points_length: 1070 dynamic_size: 6 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0115, fp: 0.3486, label 0: tensor(226), label 1: tensor(63) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7203554511070251 and after 0.8361824750900269 +num_clicks 50 points_length: 858 dynamic_size: 4 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0124, fp: 0.3188, label 0: tensor(225), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6646410226821899 and after 0.830126166343689 +num_clicks 50 points_length: 1043 dynamic_size: 49 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0100, fp: 0.2890, label 0: tensor(327), label 1: tensor(49) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7049351930618286 and after 0.8655300140380859 +num_clicks 50 points_length: 702 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0181, fp: 0.2269, label 0: tensor(194), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.7037218809127808 and after 0.858758807182312 +num_clicks 50 points_length: 883 dynamic_size: 29 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 0.0253, fp: 0.1861, label 0: tensor(214), label 1: tensor(96) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.6700261831283569 and after 0.862610936164856 +epoch: 7/20, iter: 30/42: loss:1.5196: rank:-1 +[23:44:43.256] epoch: 7/20, iter: 30/42: loss:1.5196: rank:-1 +num_clicks 50 points_length: 650 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(48) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.06837666034698486 and after 0.11856506764888763 +num_clicks 50 points_length: 574 dynamic_size: 44 +filter out voxels: 988 +filter out voxels: 3 +First batch: fn: 0.9873, fp: 0.1763, label 0: tensor(3), label 1: tensor(127) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.09169519692659378 and after 0.385974645614624 +num_clicks 50 points_length: 969 dynamic_size: 7 +filter out voxels: 4294 +filter out voxels: 419 +First batch: fn: 0.8125, fp: 0.6578, label 0: tensor(1), label 1: tensor(111) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.11377030611038208 and after 0.5522454380989075 +num_clicks 50 points_length: 248 dynamic_size: 14 +filter out voxels: 1708 +filter out voxels: 0 +First batch: fn: 0.7783, fp: 0.4186, label 0: tensor(3), label 1: tensor(66) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1879032552242279 and after 0.5428187847137451 +num_clicks 50 points_length: 224 dynamic_size: 35 +filter out voxels: 4044 +filter out voxels: 0 +First batch: fn: 0.7462, fp: 0.8860, label 0: tensor(20), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.15867292881011963 and after 0.6226829290390015 +num_clicks 50 points_length: 210 dynamic_size: 34 +filter out voxels: 1326 +filter out voxels: 0 +First batch: fn: 0.6479, fp: 0.4580, label 0: tensor(14), label 1: tensor(77) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.22432108223438263 and after 0.6016336679458618 +num_clicks 50 points_length: 196 dynamic_size: 47 +filter out voxels: 2728 +filter out voxels: 0 +First batch: fn: 0.6302, fp: 0.8035, label 0: tensor(31), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.2004028558731079 and after 0.6654220819473267 +num_clicks 50 points_length: 204 dynamic_size: 48 +filter out voxels: 617 +filter out voxels: 0 +First batch: fn: 0.5499, fp: 0.4583, label 0: tensor(24), label 1: tensor(73) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.24341456592082977 and after 0.6386128664016724 +num_clicks 50 points_length: 184 dynamic_size: 3 +filter out voxels: 1579 +filter out voxels: 0 +First batch: fn: 0.5921, fp: 0.5921, label 0: tensor(1), label 1: tensor(51) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.1715942919254303 and after 0.6565336585044861 +num_clicks 50 points_length: 204 dynamic_size: 46 +filter out voxels: 1704 +filter out voxels: 0 +First batch: fn: 0.5372, fp: 0.5787, label 0: tensor(19), label 1: tensor(62) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23906096816062927 and after 0.6654146909713745 +num_clicks 50 points_length: 186 dynamic_size: 50 +filter out voxels: 1689 +filter out voxels: 0 +First batch: fn: 0.4838, fp: 0.7139, label 0: tensor(30), label 1: tensor(79) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23713095486164093 and after 0.6862838864326477 +epoch: 7/20, iter: 31/42: loss:3.7365: rank:-1 +[23:44:53.407] epoch: 7/20, iter: 31/42: loss:3.7365: rank:-1 +num_clicks 50 points_length: 1850 dynamic_size: 16 +filter out voxels: 0 +filter out voxels: 0 +First batch: fn: 1.0000, fp: 0.0000, label 0: tensor(0), label 1: tensor(134) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.28087249398231506 and after 0.1820845603942871 +num_clicks 50 points_length: 5654 dynamic_size: 32 +filter out voxels: 1744 +filter out voxels: 4 +First batch: fn: 0.3811, fp: 2.6751, label 0: tensor(530), label 1: tensor(136) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.23851943016052246 and after 0.3152729272842407 +num_clicks 50 points_length: 3304 dynamic_size: 44 +filter out voxels: 0 +filter out voxels: 25 +First batch: fn: 0.2254, fp: 1.5605, label 0: tensor(361), label 1: tensor(85) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3771233856678009 and after 0.4203605055809021 +num_clicks 50 points_length: 1811 dynamic_size: 17 +filter out voxels: 0 +filter out voxels: 194 +First batch: fn: 0.1459, fp: 0.8330, label 0: tensor(310), label 1: tensor(35) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.36697646975517273 and after 0.45329970121383667 +num_clicks 50 points_length: 1429 dynamic_size: 43 +filter out voxels: 0 +filter out voxels: 223 +First batch: fn: 0.1703, fp: 0.6022, label 0: tensor(269), label 1: tensor(72) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3664851784706116 and after 0.4911123514175415 +num_clicks 50 points_length: 1222 dynamic_size: 18 +filter out voxels: 0 +filter out voxels: 205 +First batch: fn: 0.1568, fp: 0.5038, label 0: tensor(204), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34346842765808105 and after 0.5270912051200867 +num_clicks 50 points_length: 1051 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 175 +First batch: fn: 0.1568, fp: 0.4114, label 0: tensor(207), label 1: tensor(47) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.34128451347351074 and after 0.5609865188598633 +num_clicks 50 points_length: 892 dynamic_size: 12 +filter out voxels: 0 +filter out voxels: 133 +First batch: fn: 0.1805, fp: 0.3016, label 0: tensor(128), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3555769622325897 and after 0.5630159378051758 +num_clicks 50 points_length: 900 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 127 +First batch: fn: 0.1573, fp: 0.3292, label 0: tensor(182), label 1: tensor(54) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.35823380947113037 and after 0.5762321352958679 +num_clicks 50 points_length: 814 dynamic_size: 33 +filter out voxels: 0 +filter out voxels: 124 +First batch: fn: 0.1659, fp: 0.2741, label 0: tensor(187), label 1: tensor(68) +--- ===================================== --- +--- above before model, below after model --- +--- ===================================== --- +dice before refine 0.3344372510910034 and after 0.5974656343460083 +num_clicks 50 points_length: 791 dynamic_size: 25 +filter out voxels: 0