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{
"imports": [
"$import glob",
"$import os",
"$import ignite",
"$import json",
"$import urllib"
],
"validate#handlers": [
{
"_target_": "StatsHandler",
"iteration_log": false
},
{
"_target_": "CheckpointLoader",
"load_path": "$@ckpt_dir + '/model.pt'",
"load_dict": {
"model": "@network"
}
},
{
"_target_": "MetricsSaver",
"save_dir": "@output_dir",
"metrics": [
"val_mean_dice",
"ar/dice",
"ve/dice",
"ur/dice",
"ki/dice",
"tu/dice",
"tu/haunsdorff",
"tu/surface"
],
"metric_details": [
"val_mean_dice"
],
"batch_transform": "$monai.handlers.from_engine(['image_meta_dict'])",
"summary_ops": "*"
}
],
"download_data": [
"$import logging",
"$import zipfile",
"$import os",
"$logging.info('Downloading 298Mb data zip archive, please wait... (To see progress bar, download manually from https://disk.yandex.ru/d/pWEKt6D3qi3-aw , and extract data to bundle_root - ' + @bundle_root + ')')",
"$urllib.request.urlretrieve(json.loads(urllib.request.urlopen('https://cloud-api.yandex.net/v1/disk/public/resources/download?public_key=https%3A%2F%2Fdisk.yandex.ru%2Fd%2FpWEKt6D3qi3-aw').read())['href'], @bundle_root + '/AVUCTK_cases.zip')",
"$zipfile.ZipFile(os.path.join(@bundle_root, 'AVUCTK_cases.zip'), 'r').extractall(@bundle_root)",
"$os.remove(os.path.join(@bundle_root, 'AVUCTK_cases.zip'))",
"$logging.info('Data extracted to ' + @bundle_root)"
],
"evaluate": [
"$monai.utils.set_determinism(seed=42)",
"$setattr(torch.backends.cudnn, 'benchmark', True)",
"$@validate#evaluator.run()"
]
}
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