OrganSubSegmenter / README.md
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---
datasets:
- AbdomenAtlas/_AbdomenAtlas1.1Mini
---
This is an nnU-Net trained on AbdomenAtlas 2.0 to segment organs and organ sub-segments (e.g., pancreatic head, body and tail) in CT scans. The model is used at https://github.com/MrGiovanni/R-Super
Segmentation classes:
"background": 0,
"aorta": 1,
"gall_bladder": 2,
"kidney_left": 3,
"kidney_right": 4,
"postcava": 5,
"spleen": 6,
"stomach": 7,
"adrenal_gland_left": 8,
"adrenal_gland_right": 9,
"bladder": 10,
"celiac_trunk": 11,
"colon": 12,
"duodenum": 13,
"esophagus": 14,
"femur_left": 15,
"femur_right": 16,
"hepatic_vessel": 17,
"intestine": 18,
"lung_left": 19,
"lung_right": 20,
"portal_vein_and_splenic_vein": 21,
"prostate": 22,
"rectum": 23,
"liver_segment_1": 24,
"liver_segment_2": 25,
"liver_segment_3": 26,
"liver_segment_4": 27,
"liver_segment_5": 28,
"liver_segment_6": 29,
"liver_segment_7": 30,
"liver_segment_8": 31,
"pancreas_head": 32,
"pancreas_body": 33,
"pancreas_tail": 34