Create app.py

app.py

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+import streamlit as st
+st.markdown("""
+
+
+# Graphs - MeSH Tree Structures:
+
+Tree MeSH:
+
+https://www.nlm.nih.gov/mesh/intro_trees.html
+https://meshb.nlm.nih.gov/treeView
+
+# Clusters Topic Modeling and NLP:
+https://www.google.com/search?q=topic+cluster+model+python&rlz=1C1GCEA_enUS969US969&oq=topic+cluster+model+python&aqs=chrome..69i57.5157j0j4&sourceid=chrome&ie=UTF-8#fpstate=ive&vld=cid:a25dde33,vid:0tkg7t2gsfY
+https://www.surveymonkey.com/mp/natural-language-processing/
+https://github.com/NiuTrans/ABigSurvey
+https://aclanthology.org/2022.aacl-main.46.pdf
+https://youtu.be/0tkg7t2gsfY
+https://youtu.be/pZgYRYUc6Mc
+https://youtu.be/1CJvt4OjWgs
+https://www.kaggle.com/code/panks03/clustering-with-topic-modeling-using-lda
+
+# Knowledge Graphs - Assessment and Care Plan:
+
+## Assessment:
+![image](https://github.optum.com/storage/user/15588/files/4bbee534-f336-4cd1-ae8f-4e37a3e28357)
+
+## Care Plan:
+![image](https://github.optum.com/storage/user/15588/files/1f90120a-597d-4a62-8fdf-1c70015aca25)
+
+## Graphs for Public Open Source Taxonomies and Ontologies:
+ML: https://huggingface.co/spaces/awacke1/VizLib-GraphViz-SwimLanes-Digraph-ForMLLifecycle
+Demo: https://huggingface.co/spaces/awacke1/CardGameActivity-GraphViz
+Mermaid: https://huggingface.co/spaces/awacke1/MermaidModelHTML5Demo
+OMS: https://huggingface.co/spaces/awacke1/CPVisGraph
+Graphviz: https://huggingface.co/spaces/awacke1/GraphViz-Demo
+ExamplesOfAI:  https://huggingface.co/spaces/awacke1/ExamplesOfAI
+
+## FHIR - CT - Graph
+
+# FHIR:
+https://huggingface.co/spaces/awacke1/Clinical-Terminology-FHIR-Assessment
+https://huggingface.co/spaces/awacke1/SMART-FHIR-Assessment-Observation-SDKs
+https://huggingface.co/spaces/awacke1/SMART-FHIR-Kits-SDC-HL7
+https://huggingface.co/spaces/awacke1/SMART-FHIR-Assessment-Blood-Pressure
+https://huggingface.co/spaces/awacke1/SMART-FHIR-Assessment-Exercise
+
+# Clinical Terminology:
+https://huggingface.co/spaces/awacke1/Ontology-Gradio
+https://huggingface.co/spaces/awacke1/Biomed-NLP-AI-Clinical-Terminology
+https://huggingface.co/spaces/awacke1/ClinicalTerminologyNER-Refactored
+https://huggingface.co/spaces/awacke1/ClinicalTerminologyAISearch
+https://huggingface.co/spaces/awacke1/ClinicalTerminologyAISearch1215
+
+# Graph, Clinical Terminology, FHIR Apps and Services:
+https://huggingface.co/spaces/awacke1/Git-GPG-Git-Actions-01-GraphViz
+https://huggingface.co/spaces/awacke1/Dice-Roll-Treemap-Plotly
+https://huggingface.co/spaces/awacke1/GraphVis3
+https://huggingface.co/spaces/awacke1/GraphViz-Demo
+https://huggingface.co/spaces/awacke1/StreamlitGraphViz
+https://huggingface.co/spaces/awacke1/CardGameActivity-GraphViz
+
+# CP Matplotlib, NetworkX, Streamlit, PyVis, st-click0detector, graphviz:
+https://huggingface.co/spaces/awacke1/CPVisGraph
+
+# OMS and LOCUS:
+https://huggingface.co/spaces/awacke1/NLPGraphOMSandLOCUS
+
+# Technical Architecture - Open Source Graph ML Libraries:
+NetworkX: https://networkx.org/
+PyTorch GNN: https://github.com/microsoft/ptgnn
+Jraph: https://github.com/deepmind/jraph
+Spektral: https://graphneural.network/
+Graph Nets: https://github.com/deepmind/graph_nets
+Deep Graph Library (DGL): https://github.com/dmlc
+PyTorch Geometric: https://github.com/pyg-team/pytorch_geometric
+
+# Provider Graph - Maps of Hospitals
+
+https://huggingface.co/spaces/awacke1/MN.Map.Hospitals.Top.Five
+![image](https://user-images.githubusercontent.com/30595158/226150906-65fcdb27-b234-4500-8cd8-c6b88d1afa05.png)
+
+# Technical Architecture - Open Source Graph ML Libraries:
+
+NetworkX: https://networkx.org/
+PyTorch GNN: https://github.com/microsoft/ptgnn
+Jraph: https://github.com/deepmind/jraph
+Spektral: https://graphneural.network/
+Graph Nets: https://github.com/deepmind/graph_nets
+Deep Graph Library (DGL): https://github.com/dmlc
+PyTorch Geometric: https://github.com/pyg-team/pytorch_geometric
+
+
+# Clinical Terminology:
+# FHIR:
+https://huggingface.co/spaces/awacke1/Clinical-Terminology-FHIR-Assessment
+https://huggingface.co/spaces/awacke1/SMART-FHIR-Assessment-Observation-SDKs
+https://huggingface.co/spaces/awacke1/SMART-FHIR-Kits-SDC-HL7
+https://huggingface.co/spaces/awacke1/SMART-FHIR-Assessment-Blood-Pressure
+https://huggingface.co/spaces/awacke1/SMART-FHIR-Assessment-Exercise
+
+
+# Clinical Terminology:
+https://huggingface.co/spaces/awacke1/Ontology-Gradio
+https://huggingface.co/spaces/awacke1/Biomed-NLP-AI-Clinical-Terminology
+https://huggingface.co/spaces/awacke1/ClinicalTerminologyNER-Refactored
+https://huggingface.co/spaces/awacke1/ClinicalTerminologyAISearch
+https://huggingface.co/spaces/awacke1/ClinicalTerminologyAISearch1215
+
+
+
+# Maps
+
+Space							|				URL
+-------------------------------------------------------------------------------------------------------------------------------------------
+awacke1/VizLib-TopLargeHospitalsNewJersey-03-09-2023 | https://huggingface.co/spaces/awacke1/VizLib-TopLargeHospitalsNewJersey-03-09-2023
+awacke1/Bird-Species-Migration-Month-Map	|	https://huggingface.co/spaces/awacke1/Bird-Species-Migration-Month-Map
+⚗️🧠🔬🧬 Clinical Terminology Auto Mapper AI 👩‍⚕️🩺⚕️🙋	|	https://huggingface.co/spaces/awacke1/SNOMED-LOINC-eCQM	
+awacke1/Visualization-Plotly-Sunbursts-Treemaps-and-WebGL	|	https://huggingface.co/spaces/awacke1/Visualization-Plotly-Sunbursts-Treemaps-and-WebGL
+awacke1/HTML5-Aframe-3D-Maps	|	https://huggingface.co/spaces/awacke1/HTML5-Aframe-3D-Maps
+awacke1/HTML5-Aframe-3dMap-Flight	|	https://huggingface.co/spaces/awacke1/HTML5-Aframe-3dMap-Flight
+
+Figures:
+![image](https://user-images.githubusercontent.com/30595158/226116055-25b8c900-bc10-472d-8b5f-61c7b8b5452b.png)
+
+
+# MediaPipe
+### A cross language SDK for AI that is real time, 3d, camera responsive, and on any device for nearly any language
+#### Vision
+#### Natural Language
+#### Audio
+
+Mediapipe has fast and flexible AI/ML pipelines.
+Examples with Javascript Links!
+
+1. Image Classifier: https://mediapipe-studio.webapps.google.com/demo/image_classifier
+2. Object Detector: https://mediapipe-studio.webapps.google.com/demo/object_detector
+3. Text Classification: https://mediapipe-studio.webapps.google.com/demo/text_classifier
+4. Gesture Recognizer: https://mediapipe-studio.webapps.google.com/demo/gesture_recognizer
+5. Hand Landmark Detection: https://mediapipe-studio.webapps.google.com/demo/hand_landmarker
+6. Audio Classifier: https://mediapipe-studio.webapps.google.com/demo/audio_classifier
+
+Get started with just Javascript!!
+Getting Started: https://google.github.io/mediapipe/getting_started/javascript.html
+
+Javascript Solutions - Ready to Demo:
+1. Face Mesh: https://codepen.io/mediapipe/full/KKgVaPJ
+2. Face Detection: https://codepen.io/mediapipe/full/dyOzvZM
+3. Hands: https://codepen.io/mediapipe/full/RwGWYJw
+4. Face, Hands, Body: https://codepen.io/mediapipe/full/LYRRYEw
+5. Objectron: https://codepen.io/mediapipe/full/BaWvzdY
+6. Full Skeletal Pose: https://codepen.io/mediapipe/full/jOMbvxw
+7. Self Segmentation From Background: https://codepen.io/mediapipe/full/wvJyQpq
+
+
+# QA Model Spaces:
+
+QA use cases include QA, Semantic Document and FAQ Search.
+
+1. Streamlit Question Answering w Hugging Face: https://huggingface.co/spaces/awacke1/Question-answering
+2. Seq2Seq:
+	- https://huggingface.co/spaces/awacke1/4-Seq2SeqQAT5
+	- https://huggingface.co/spaces/awacke1/AW-04-GR-Seq-2-Seq-QA-Auto-Gen
+	- 
+3. BioGPT: https://huggingface.co/spaces/awacke1/microsoft-BioGPT-Large-PubMedQA
+4. NLP QA Context: https://huggingface.co/spaces/awacke1/NLPContextQATransformersRobertaBaseSquad2
+	- https://huggingface.co/spaces/awacke1/SOTA-Plan
+5.  https://huggingface.co/spaces/awacke1/Question-answering
+6.  QA MLM: https://huggingface.co/spaces/awacke1/SOTA-MedEntity
+
+# 🤖 QA Models and Datasets:
+
+- Reader model extracts answers from text using QA pairs. SQuAD is the primary dataset.
+- Transformers (huggingface) has research momentum and solves real business problems.
+
+## 💻 Process:
+
+1. Best practices for QA systems: https://www.youtube.com/playlist?list=PLHgX2IExbFotW6WgDZ-cMzpDBUNKCMBbF
+2. Optimize Question/Answer Heads for SQuAD.
+3. QA search to ask questions to textual kb.
+4. Return text sections as answers.
+5. Organize text collection.
+6. Find similar documents to given input.
+7. Perform semantic and comprehensive word matching.
+8. Match incoming questions to FAQ KB dataset.
+
+## 📋 Tasks:
+
+1. Visual, 
+2. Document, and 
+3. Table QA.
+4. Zero Shot Classification.
+5. Translation.
+6. Conversational/Chat.
+7. Text2Text Generation.
+8. ASR/TTS.
+
+# Mermaid model
+
+```mermaid
+graph LR;
+    A[Reader model]-->B[SQuAD];
+    C[Transformers from Huggingface]-->D[Real Business Problems];
+    E[Best practices for QA systems]-->F[Optimize Question/Answer Heads for SQuAD];
+    G[QA search]-->H[Textual KB];
+    H-->I[Return text sections as answers];
+    J[Organize text collection]-->K[Find similar documents to given input];
+    K-->I;
+    L[Perform semantic and comprehensive word matching]-->I;
+    M[Match incoming questions to FAQ KB dataset]-->I;
+    N[Visual QA]-->O[Document QA];
+    N-->P[Table QA];
+    Q[Zero Shot Classification]-->I;
+    R[Translation]-->I;
+    S[Conversational/Chat]-->I;
+    T[Text2Text Generation]-->I;
+    U[ASR/TTS]-->I;
+
+```
+
+# Top 50 Assessments in Physical and Mental Health
+
+Below are the top 50 mental and physical health assessments.
+1. **Patient Health Questionnaire (PHQ-9)** 🧠 - Major depressive disorder (ICD-10: F32)
+2. **Generalized Anxiety Disorder 7-item Scale (GAD-7)** 😰 - Generalized anxiety disorder (ICD-10: F41.1)
+3. **Hamilton Rating Scale for Depression (HRSD)** 🧠 - Major depressive disorder (ICD-10: F32)
+4. **World Health Organization Disability Assessment Schedule 2.0 (WHODAS 2.0)** 🧠💪 - Physical and mental disability (ICD-10: Z73.1)
+5. **Short Form-36 Health Survey (SF-36)** 💪🧠 - Health-related quality of life (CPT: 99499)
+6. **Health Assessment Questionnaire (HAQ)** 💪 - Functional status assessment (CPT: 97750)
+7. **EuroQol-5D (EQ-5D)** 💪🧠 - Health-related quality of life (LOINC: 83792-6)
+8. **Geriatric Depression Scale (GDS)** 🧑‍🦳🧠 - Depression in older adults (ICD-10: F32.1)
+9. **Mini-Mental State Examination (MMSE)** 🧑‍🦳💭 - Cognitive impairment (ICD-10: F06.7)
+10. **Pain Catastrophizing Scale (PCS)** 💔 - Chronic pain (LOINC: 86351-6)
+11. **Oswestry Disability Index (ODI)** 💪💔 - Back pain (CPT: 97750)
+12. **Fibromyalgia Impact Questionnaire (FIQ)** 💔😩 - Fibromyalgia (SNOMED: 316962002)
+13. **Beck Depression Inventory (BDI)** 🧠 - Depression (ICD-10: F32)
+14. **Posttraumatic Stress Disorder Checklist (PCL)** 😰😞 - Posttraumatic stress disorder (ICD-10: F43.1)
+15. **Alcohol Use Disorders Identification Test (AUDIT)** 🍻 - Alcohol use disorder (ICD-10: F10)
+16. **Drug Abuse Screening Test (DAST)** 💊 - Substance use disorder (ICD-10: F19)
+17. **Eating Attitudes Test (EAT)** 🍴 - Eating disorders (ICD-10: F50)
+18. **Adolescent Eating Disorder Examination (ADE)** 🍴👩‍🦰 - Eating disorders in adolescents (ICD-10: F50)
+19. **Child Behavior Checklist (CBCL)** 👧🧒 - Child behavior problems (ICD-10: F90)
+20. **Autism Spectrum Quotient (AQ)** 🧑‍🦱 - Autism spectrum disorder (ICD-10: F84.0)
+21. **Columbia-Suicide Severity Rating Scale (C-SSRS)** 🩸 - Suicide risk (ICD-10: Z65.8)
+22. **Perceived Stress Scale (PSS)** 😩 - Stress (LOINC: 75217-3)
+23. **Satisfaction with Life Scale (SWLS)** 😊 - Life satisfaction (LOINC: 69406-9)
+24. **Health Belief Model Scale (HBM)** 💊💉 - Health beliefs (LOINC: 88018)
+25. **Multidimensional Health Locus of Control Scale (MHLC)** 💊💉 - Health locus of control (LOINC: 87561-7)
+26. **Life Orientation Test-Revised (LOT-R)** 😃 - Optimism (LOINC: 75315-5)
+27. **State-Trait Anxiety Inventory (STAI)** 😰 - Anxiety (LOINC: 71092-3)
+28. **Multidimensional Scale of Perceived Social Support (MSPSS)** 👥 - Social support (LOINC: 86649-4)
+29. **Job Content Questionnaire (JCQ)** 💼 - Job stress (LOINC: 76554-9)
+30. **Burnout Measure (BO)** 🔥 - Burnout (LOINC: 89049-8)
+31. **Family Assessment Device (FAD)** 👨‍👩‍👧 - Family functioning (LOINC: 84113-2)
+32. **Perceived Control Scale (PCS)** 💪 - Perceived control (LOINC: 86447-0)
+33. **General Self-Efficacy Scale (GSES)** 💪 - Self-efficacy (LOINC: 76563-0)
+34. **Coping Strategies Inventory (CSI)** 😓 - Coping strategies (LOINC: 89057-1)
+35. **Acceptance and Action Questionnaire (AAQ-II)** 🧘 - Acceptance and commitment therapy (LOINC: 88027-2)
+36. **Attention Deficit Hyperactivity Disorder Self-Report Scale (ASRS)** 👧🧒 - ADHD (ICD-10: F90)
+37. **Impact of Event Scale-Revised (IES-R)** 😔😞 - Trauma (LOINC: 86237-7)
+38. **Insomnia Severity Index (ISI)** 💤 - Insomnia (LOINC: 82451-5)
+39. **Social Phobia Inventory (SPIN)** 😰 - Social anxiety disorder (ICD-10: F40.1)
+40. **Panic Disorder Severity Scale (PDSS)** 😰 - Panic disorder (ICD-10: F41.0)
+41. **Yale-Brown Obsessive Compulsive Scale (Y-BOCS)** 🤔 - Obsessive-compulsive disorder (ICD-10: F42)
+42. **Social Interaction Anxiety Scale (SIAS)** 😰 - Social anxiety disorder (ICD-10: F40.1)
+43. **Generalized Anxiety Disorder Scale (GADS)** 😰 - Generalized anxiety disorder (ICD-10: F41.1)
+44. **Postpartum Depression Screening Scale (PDSS)** 🤱🧠 - Postpartum depression (ICD-10: F53.0)
+45. **Child and Adolescent Symptom Inventory (CASI)** 👧🧒🧠 - Child and adolescent mental health (ICD-10: F90)
+46. **Strengths and Difficulties Questionnaire (SDQ)** 👧🧒🧠 - Child and adolescent mental health (ICD-10: F90)
+47. **Kessler Psychological Distress Scale (K10)** 🧠 - Psychological distress (LOINC: 76550-6)
+48. **World Health Organization Quality of Life Scale (WHOQOL)** 💪🧠 - Quality of life (LOINC: 88055-2)
+49. **Multidimensional Pain Inventory (MPI)** 💔 - Chronic pain (LOINC: 71808-8)
+50. **Cornell Scale for Depression in Dementia (CSDD)** 👴👵🧠 - Depression in dementia patients (ICD-10: F03.90)
+
+
+# SMART/FHIR/SDC Survey-Assess-Plan
+
+These SMART/FHIR/SDC compatible Surveys demonstrate how to build and conducct surveys with EMR/EHR Compliance Standards
+
+1. Smart FHIR Connect and Test BMI Calculator: https://huggingface.co/spaces/awacke1/SMART-FHIR-Assessment-BMI
+2. Smart FHIR Kits SDC HL7: https://huggingface.co/spaces/awacke1/SMART-FHIR-Kits-SDC-HL7
+3. Smart FHIR Assessment Exercise: https://huggingface.co/spaces/awacke1/SMART-FHIR-Assessment-Exercise
+4. Smart FHIR Assessment Blood Pressure: https://huggingface.co/spaces/awacke1/SMART-FHIR-Assessment-Blood-Pressure
+5. Smart FHIR - Observations-Assessments-Rules-Referrals-Providers-Programs-Fulfillment-Alerrts-Notes-SDOH: https://huggingface.co/spaces/awacke1/SMART-FHIR-Assessment-Observation-SDKs
+
+
+# Graphs Survey-Assess-Plan-Goals
+
+These top 5 graph examples introduce visual ideas to use to survey, assess, plan and reach goals.
+
+1. Graph OMS and LOCUS Standards and Quality Metrics: https://huggingface.co/spaces/awacke1/NLPGraphOMSandLOCUS
+2. Graph Pain and High Medium Low Confidence: https://huggingface.co/spaces/awacke1/VISNLP-Graph
+3. Graph Action Mechanics: https://huggingface.co/spaces/awacke1/CardGameActivity-GraphViz
+4. Graph - OMS, MH, Charts, Maps, DOT lang for Pyvis VisJS: https://huggingface.co/spaces/awacke1/CPVisGraph
+5. Graph - Plan and Assess: https://huggingface.co/spaces/awacke1/Git-GPG-Git-Actions-01-GraphViz
+
+# ICD10, CPT, LOINC, SNOMED, HCPCS, OMS Codes for Top Health Conditions and Treatment Preferences Assessment
+
+Assess Topic| Assess Metric | Code Emoji | Code Topic | Code Type  |  Code	
+------------|---------------|------------|------------|------------|-----------
+Childhood Immunization| % of children immunized by age two |🧒💉 | Clinical Code| ICD10 | Z28.2
+Breast Cancer Screening| % of women with mammogram in past 2 yrs |🩺🎀 | Clinical Code| CPT| 77067
+Colorectal Cancer Screening| % of adults screened for colorectal cancer| 🩺💩 | Clinical Code| CPT| 82274
+Comprehensive Diabetes Care| % of diabetic patients who had all recommended tests| 🩺🩹 | Clinical Code| LOINC| 4548-4
+Controlling High Blood Pressure| % of patients with controlled blood pressure| 🩺💊 | Clinical Code| ICD10|I10
+Medication Management for Asthma| % of asthma patients with proper meds| 💊🌬️ | Clinical Code| SNOMED|195967001
+Follow-up After Mental Illness Hospitalization| % of patients with follow-up care| 🩺🏥 | Clinical Code| HCPCS|G0181
+Prenatal & Postpartum Care| % of pregnant women with proper care |🤰🩺 | Clinical Code| ICD10|Z34
+Comprehensive Eye Exam| % of diabetic patients with eye exam |🩺👀 | Clinical Code| CPT| 92014
+Childhood Weight Assessment| % of children with BMI assessment |🧒📏 | Clinical Code| ICD10| Z00.121
+Chlamydia Screening in Women| % of sexually active women screened| 🩺👩 | Clinical Code| CPT|87491
+Avoidance of Antibiotic Treatment for Acute Bronchitis| % of patients without antibiotics |🩺💊 | Clinical Code| ICD10|J20.9
+Osteoporosis Management in Women|% of women with bone density test |🩺💪 | Clinical Code| CPT|77080
+Use of High-Risk Medications in the Elderly| % of elderly with safe meds |💊👴👵 | Clinical Code| HCPCS |G9612
+Diabetes Screening for Schizophrenia or Bipolar Disorder| % of patients with mental illness screened |🧠🩺 | Clinical Code| SNOMED| 169609005
+All-Cause Readmissions| % of patients readmitted within 30 days |🩺🏥 | Clinical Code| ICD10| Z51.5
+Antidepressant Medication Management| % of depressed patients with proper meds & follow-up |🩺🧠 | Clinical Code| CPT|96127
+Follow-up Care for Children Prescribed ADHD Medication|% of children with follow-up care |🩺🧒 | Clinical Code| ICD10|F90
+Imaging Studies for Low Back Pain| % of patients without imaging studies|🩺📊 | Clinical Code| ICD10|M54.5
+Spirometry Testing for COPD|% of COPD patients with spirometry testing |🩺🫁 | Clinical Code|CPT|94010
+
+
+""")