restore docs ci

.github/workflows/ci.yml

@@ -2,9 +2,9 @@ name: CI
 
 on:
   push:
-    branches: [main, develop]
+    branches: [main, dev, develop]
   pull_request:
-    branches: [main, develop]
+    branches: [main, dev, develop]
 
 jobs:
   test:
@@ -65,3 +65,40 @@ jobs:
         run: |
           pytest tests/integration/ -v -m "integration and not openai and not embedding_provider" --tb=short -p no:logfire || true
         continue-on-error: true  # Allow failures if dependencies not available
+
+  docs:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    if: github.event_name == 'push' && (github.ref == 'refs/heads/main' || github.ref == 'refs/heads/dev' || github.ref == 'refs/heads/develop')
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
+        with:
+          version: "latest"
+
+      - name: Install dependencies
+        run: |
+          uv sync --extra dev
+
+      - name: Build documentation
+        run: |
+          uv run mkdocs build --strict
+
+      - name: Deploy to GitHub Pages
+        uses: peaceiris/actions-gh-pages@v3
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./site
+          publish_branch: dev
+          cname: false
+          keep_files: true

mkdocs.yml

@@ -0,0 +1,118 @@
+site_name: DeepCritical
+site_description: AI-Native Drug Repurposing Research Agent
+site_author: DeepCritical Team
+site_url: https://deepcritical.github.io/GradioDemo/
+
+repo_name: DeepCritical/GradioDemo
+repo_url: https://github.com/DeepCritical/GradioDemo
+edit_uri: edit/dev/docs/
+
+theme:
+  name: material
+  palette:
+    # Light mode
+    - scheme: default
+      primary: orange
+      accent: red
+      toggle:
+        icon: material/brightness-7
+        name: Switch to dark mode
+    # Dark mode
+    - scheme: slate
+      primary: orange
+      accent: red
+      toggle:
+        icon: material/brightness-4
+        name: Switch to light mode
+  features:
+    - navigation.tabs
+    - navigation.sections
+    - navigation.expand
+    - navigation.top
+    - search.suggest
+    - search.highlight
+    - content.code.annotate
+    - content.code.copy
+  icon:
+    repo: fontawesome/brands/github
+
+plugins:
+  - search
+  - mermaid2
+  - codeinclude
+  - minify:
+      minify_html: true
+      minify_js: true
+      minify_css: true
+
+markdown_extensions:
+  - pymdownx.highlight:
+      anchor_linenums: true
+  - pymdownx.inlinehilite
+  - pymdownx.superfences:
+      custom_fences:
+        - name: mermaid
+          class: mermaid
+          format: !!python/name:pymdownx.superfences.fence_code_format
+      preserve_tabs: true
+  - pymdownx.tabbed:
+      alternate_style: true
+  - pymdownx.tasklist:
+      custom_checkbox: true
+  - pymdownx.emoji:
+      emoji_generator: !!python/name:pymdownx.emoji.to_svg
+      emoji_index: !!python/name:pymdownx.emoji.twemoji
+  - admonition
+  - pymdownx.details
+  - pymdownx.superfences
+  - attr_list
+  - md_in_html
+  - tables
+  - toc:
+      permalink: true
+
+nav:
+  - Home: index.md
+  - Overview:
+    - overview/architecture.md
+    - overview/features.md
+  - Getting Started:
+    - getting-started/installation.md
+    - getting-started/quick-start.md
+    - getting-started/mcp-integration.md
+    - getting-started/examples.md
+  - Configuration: CONFIGURATION.md
+  - Architecture:
+    - architecture/overview.md
+    - architecture/design-patterns.md
+    - architecture/graph_orchestration.md
+    - architecture/agents.md
+    - architecture/orchestrators.md
+    - architecture/tools.md
+    - architecture/middleware.md
+    - architecture/services.md
+  - API Reference:
+    - api/agents.md
+    - api/tools.md
+    - api/orchestrators.md
+    - api/services.md
+    - api/models.md
+  - Contributing:
+    - contributing/index.md
+    - contributing/code-quality.md
+    - contributing/code-style.md
+    - contributing/error-handling.md
+    - contributing/implementation-patterns.md
+    - contributing/prompt-engineering.md
+    - contributing/testing.md
+  - License: license.md
+  - Team: team.md
+
+extra:
+  social:
+    - icon: fontawesome/brands/github
+      link: https://github.com/DeepCritical/GradioDemo
+    - icon: material/web
+      link: https://huggingface.co/spaces/DataQuests/DeepCritical
+
+copyright: Copyright © 2024 DeepCritical Team