Update code/add_3Dalignment.py

code/add_3Dalignment.py

@@ -258,7 +258,13 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
                         atomSequence += threeToOne(line[17:20].strip())
                         coords.append([line[31:38].strip(), line[39:46].strip(), line[47:54].strip()])
                         resnums_for_sasa.append(line[22:26].strip())
-             
+        print('In 3D Alignments')
+        print('atomSequence')
+        print(atomSequence)
+        print('coords')
+        print(coords)
+        print('resnums_for_sasa')
+        print(resnums_for_sasa)
         aligner.mode = 'local'
         aligner.substitution_matrix = substitution_matrices.load("BLOSUM62")
         aligner.open_gap_score = -11