Update code/add_alignment.py

code/add_alignment.py

@@ -42,6 +42,8 @@ def do_alignment(identifier, uniprotSequence, pdbSequence, alignment_path):
             alignment = (str(alignment).strip().split('\n'))
             alignment = [''.join(['.' if m == ' ' else m for m in x]) for x in alignment]
             alignment_list.append(alignment)
+    print('alignments')
+    print(alignments)
     print('ALIGNMENT LIST')
     print(alignment_list)
     return alignment_list