Update code/add_3Dalignment.py

code/add_3Dalignment.py

@@ -215,10 +215,8 @@ def get_coords(annot, alignments, coords, resnums_for_sasa, mode):
 
 
 def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chain, pdbID, mode, path_3D_alignment,file_format = 'gzip'):
-    print('In Function')
     pdbSequence = convert_non_standard_amino_acids(pdbSequence)
-    print(pdbSequence)
-    print(mode, source)
+
     if mode == 1:
         if source == 'PDB':
             # Step 1: Fetch the PDB file
@@ -265,16 +263,8 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
         aligner.substitution_matrix = substitution_matrices.load("BLOSUM62")
         aligner.open_gap_score = -11
         aligner.extend_gap_score = -1
-        st.write('I wanna sleep')
-        st.write(pdbSequence)
-        st.write(atomSequence)
-        st.write(aligner.align(pdbSequence, atomSequence))
         alignments = aligner.align(pdbSequence, atomSequence)
         alignments = (list(alignments))
-        print('IN FUNC')
-        print(alignments)
-        print(coords)
-        print(resnums_for_sasa)
         return alignments, coords, resnums_for_sasa
     elif mode==2:
             atomSequence = ''
@@ -310,8 +300,5 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
             aligner.extend_gap_score = -1
             alignments = aligner.align(pdbSequence, atomSequence)
             alignments = (list(alignments))
-            #for alignment in alignments:
-            #    f.write(str(alignment))
-            #    f.write('\n')
-            #    f.write('\n')
+
             return alignments, coords, resnums_for_sasa