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b415a5a
1
Parent(s):
0236678
Update code/alphafold_featureVector.py
Browse files
code/alphafold_featureVector.py
CHANGED
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@@ -384,17 +384,18 @@ def alphafold(input_set, mode, impute):
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st.write('HERE1')
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st.write('
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pdb_path = hf_hub_download(repo_id="HuBioDataLab/AlphafoldStructures", filename=f"AF-{name}-F{mod}-model_v4.pdb.gz",repo_type = 'dataset')
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with gzip.open(pdb_path, mode="rt") as f:
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file_content = f.read()
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st.write(file_content)
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st.write('HERE2')
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st.write(uniprotID)
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st.write(mod)
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st.write(
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st.write(
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st.write(Path(path_to_output_files / '3D_alignment'))
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st.write('HERE1')
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st.write('uniprot', uniprotID)
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pdb_path = hf_hub_download(repo_id="HuBioDataLab/AlphafoldStructures", filename=f"AF-{name}-F{mod}-model_v4.pdb.gz",repo_type = 'dataset')
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with gzip.open(pdb_path, mode="rt") as f:
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file_content = f.read()
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st.write(file_content)
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st.write('HERE2')
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st.write('uniprotID',uniprotID)
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st.write('model_num', mod)
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st.write('pdb_path', pdb_path)
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st.write('pdbSequence', pdbSequence)
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st.write('mode',mode, type(mode))
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st.write(Path(path_to_output_files / '3D_alignment'))
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