Update code/add_3Dalignment.py

code/add_3Dalignment.py

@@ -269,6 +269,11 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
         aligner.substitution_matrix = substitution_matrices.load("BLOSUM62")
         aligner.open_gap_score = -11
         aligner.extend_gap_score = -1
+                    
+        print('HERE LASTLY')
+        print(pdbSequence)
+        print(atomSequence)
+        print(aligner.align(pdbSequence, atomSequence))
         alignments = aligner.align(pdbSequence, atomSequence)
         alignments = (list(alignments))
         return alignments, coords, resnums_for_sasa
@@ -304,10 +309,7 @@ def get_alignments_3D(identifier, model_num, pdb_path, pdbSequence, source, chai
             aligner.substitution_matrix = substitution_matrices.load("BLOSUM62")
             aligner.open_gap_score = -11
             aligner.extend_gap_score = -1
-            print('HERE LASTLY')
-            print(pdbSequence)
-            print(atomSequence)
-            print(aligner.align(pdbSequence, atomSequence))
+
             alignments = aligner.align(pdbSequence, atomSequence)
             alignments = (list(alignments))