Update pdb_featureVector.py

pdb_featureVector.py

@@ -225,7 +225,7 @@ def pdb(input_set, mode, impute):
         for search in pdbs:
             # Step 1: Fetch the PDB file
             pdb_url = f"https://files.rcsb.org/download/{search}.pdb"
-            st.write
+            st.write(search)
             try:
                 response = requests.get(pdb_url)
                 response.raise_for_status()  # Check for a successful response
@@ -289,11 +289,7 @@ def pdb(input_set, mode, impute):
                         index += 1
 
         print()
-        st.write()
-        st.write('pdb_info')
-        st.write(pdb_info)
-        st.write('pdb_fasta')
-        st.write(pdb_fasta)
+ 
         print('PDB file processing finished..')
         for filename in list(Path(path_to_output_files / 'pdb_structures').glob("*")):
             try:
@@ -436,7 +432,7 @@ def pdb(input_set, mode, impute):
         st.write(dfM)
         st.write('dfNM')
         st.write(dfNM)
-        
+        st.write(annotation_list)
         print('Aligning sequences...\n')
         aligned_m = final_stage(dfM, annotation_list, Path(path_to_output_files / 'alignment_files'))
         aligned_nm = final_stage(dfNM, annotation_list, Path(path_to_output_files / 'alignment_files'))