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d5f50f8
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Parent(s):
22b381a
Update code/process_input.py
Browse files- code/process_input.py +3 -0
code/process_input.py
CHANGED
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@@ -20,6 +20,9 @@ def clean_data(input_set):
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elif '.txt' in input_set:
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data = pd.read_csv(input_set, sep='\t', names=['uniprotID', 'wt', 'pos', 'mut'])
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data = data[['uniprotID', 'wt', 'pos', 'mut']]
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# Exclude termination codons, synonymous mutations and any non-standard residues such as Sec, 4 or 6.
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elif '.txt' in input_set:
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data = pd.read_csv(input_set, sep='\t', names=['uniprotID', 'wt', 'pos', 'mut'])
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+
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else:
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data = pd.DataFrame(columns = ['uniprotID', 'wt', 'pos', 'mut'])
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data = data[['uniprotID', 'wt', 'pos', 'mut']]
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# Exclude termination codons, synonymous mutations and any non-standard residues such as Sec, 4 or 6.
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