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dbaf398
1
Parent(s):
e3f067d
Update code/alphafold_featureVector.py
Browse files
code/alphafold_featureVector.py
CHANGED
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@@ -706,7 +706,6 @@ def alphafold(input_set, mode, impute):
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fname = list(filter(None, str(filename).split('.')))[0].split('/')[-1].split('-')[1].upper()
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except IndexError:
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st.write('IndexError')
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fname = ''
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if uniprotID == fname:
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files = open(filename, 'r')
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@@ -722,17 +721,14 @@ def alphafold(input_set, mode, impute):
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sasa_val = 'nan'
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else:
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sasa = 'nan'
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st.write('lxf')
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#sasa_val = sasa('alphafold', 'nan', uniprotID, sasa_pos, uniprot_matched.at[i, 'wt'], mode,
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# path_to_output_files, file_type='gzip')
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st.write('I am here', sasa_val)
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if sasa_val != None:
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uniprot_matched.at[i, 'sasa'] = sasa_val
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else:
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coordMut = 'nan'
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sasa_val = 'nan'
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uniprot_matched.at[i, 'sasa'] = sasa_val
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st.write('IDK')
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domainPositionOnPDB_list = list(
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range(int(uniprot_matched.at[i, 'domStart']), int(uniprot_matched.at[i, 'domEnd'])))
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domain_distances = []
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fname = list(filter(None, str(filename).split('.')))[0].split('/')[-1].split('-')[1].upper()
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except IndexError:
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fname = ''
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if uniprotID == fname:
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files = open(filename, 'r')
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sasa_val = 'nan'
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else:
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sasa = 'nan'
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#sasa_val = sasa('alphafold', 'nan', uniprotID, sasa_pos, uniprot_matched.at[i, 'wt'], mode,
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# path_to_output_files, file_type='gzip')
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if sasa_val != None:
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uniprot_matched.at[i, 'sasa'] = sasa_val
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else:
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coordMut = 'nan'
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sasa_val = 'nan'
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uniprot_matched.at[i, 'sasa'] = sasa_val
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domainPositionOnPDB_list = list(
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range(int(uniprot_matched.at[i, 'domStart']), int(uniprot_matched.at[i, 'domEnd'])))
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domain_distances = []
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