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f95d1bb
1
Parent(s):
b5ea29c
Update pdb_featureVector.py
Browse files- pdb_featureVector.py +2 -1
pdb_featureVector.py
CHANGED
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@@ -1374,7 +1374,7 @@ def pdb(input_set, mode, impute):
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aligner = Align.PairwiseAligner()
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print('Proceeding to 3D distance calculation...\n')
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-
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data.domainEndonPDB = data.domainEndonPDB.astype(str)
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data.domainStartonPDB = data.domainStartonPDB.astype(str)
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@@ -1386,6 +1386,7 @@ def pdb(input_set, mode, impute):
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data['uniprotSequence'] = data['uniprotSequence'].str.replace('U', 'C')
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data['pdbSequence'] = data['pdbSequence'].str.replace('U', 'C')
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for i in data.index:
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id_ = data.at[i, 'pdbID'].lower()
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up_id_ = data.at[i, 'uniprotID']
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score_ = str(data.at[i, 'score'])
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aligner = Align.PairwiseAligner()
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print('Proceeding to 3D distance calculation...\n')
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st.write(data)
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data.domainEndonPDB = data.domainEndonPDB.astype(str)
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data.domainStartonPDB = data.domainStartonPDB.astype(str)
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data['uniprotSequence'] = data['uniprotSequence'].str.replace('U', 'C')
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data['pdbSequence'] = data['pdbSequence'].str.replace('U', 'C')
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for i in data.index:
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st.write('iiiii',i)
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id_ = data.at[i, 'pdbID'].lower()
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up_id_ = data.at[i, 'uniprotID']
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score_ = str(data.at[i, 'score'])
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