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Rename api_server.py to app.py

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Rename admin_dashboard.py to internal_tools/admin_dashboard.py

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Rename sql_generator.py to src/sql_generator.py

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Rename rag_manager.py to src/rag_manager.py

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Rename db_connector.py to src/db_connector.py

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Rename init.py to src/init.py

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