Spaces:
Runtime error
Runtime error
Commit
·
50edbe9
1
Parent(s):
85f8980
Upload app.py
Browse files
app.py
CHANGED
|
@@ -6,8 +6,26 @@ import gradio as gr
|
|
| 6 |
from glycowork.ml.processing import dataset_to_dataloader
|
| 7 |
import numpy as np
|
| 8 |
import torch
|
|
|
|
| 9 |
|
| 10 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 11 |
class_list=['Amoebozoa', 'Animalia', 'Bacteria', 'Bamfordvirae', 'Chromista', 'Euryarchaeota', 'Excavata', 'Fungi', 'Heunggongvirae',
|
| 12 |
'Orthornavirae', 'Pararnavirae', 'Plantae', 'Proteoarchaeota', 'Protista', 'Riboviria']
|
| 13 |
|
|
|
|
| 6 |
from glycowork.ml.processing import dataset_to_dataloader
|
| 7 |
import numpy as np
|
| 8 |
import torch
|
| 9 |
+
import torch.nn as nn
|
| 10 |
|
| 11 |
+
class EnsembleModel(nn.Module):
|
| 12 |
+
def __init__(self, models):
|
| 13 |
+
super().__init__()
|
| 14 |
+
self.models = models
|
| 15 |
+
|
| 16 |
+
def forward(self, data):
|
| 17 |
+
# Check if GPU available
|
| 18 |
+
device = "cpu"
|
| 19 |
+
if torch.cuda.is_available():
|
| 20 |
+
device = "cuda:0"
|
| 21 |
+
# Prepare data
|
| 22 |
+
x = data.labels.to(device)
|
| 23 |
+
edge_index = data.edge_index.to(device)
|
| 24 |
+
batch = data.batch.to(device)
|
| 25 |
+
y_pred = [model(x,edge_index, batch).cpu().detach().numpy() for model in self.models]
|
| 26 |
+
y_pred = np.mean(y_pred,axis=0)[0]
|
| 27 |
+
return y_pred
|
| 28 |
+
|
| 29 |
class_list=['Amoebozoa', 'Animalia', 'Bacteria', 'Bamfordvirae', 'Chromista', 'Euryarchaeota', 'Excavata', 'Fungi', 'Heunggongvirae',
|
| 30 |
'Orthornavirae', 'Pararnavirae', 'Plantae', 'Proteoarchaeota', 'Protista', 'Riboviria']
|
| 31 |
|