SCMBench / environment.yaml
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name: economy
channels:
- pytorch
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=4.5=3_kmp_llvm
- _sysroot_linux-64_curr_repodata_hack=3=haa98f57_10
- aiofiles=22.1.0=py39h06a4308_0
- anndata=0.10.9=pyhd8ed1ab_0
- arpack=3.9.1=nompi_hf03ea27_102
- array-api-compat=1.11.2=pyh29332c3_0
- bedtools=2.31.1=h13024bc_3
- binutils_impl_linux-64=2.40=h5293946_0
- binutils_linux-64=2.40.0=hc2dff05_2
- blas=1.0=mkl
- bottleneck=1.4.2=py39ha9d4c09_0
- brotli-python=1.0.9=py39h6a678d5_9
- bzip2=1.0.8=h5eee18b_6
- c-ares=1.34.5=hb9d3cd8_0
- ca-certificates=2025.2.25=h06a4308_0
- cached-property=1.5.2=py_0
- contourpy=1.2.1=py39hdb19cb5_1
- cuda-cccl_linux-64=12.8.90=ha770c72_1
- cuda-crt-dev_linux-64=12.8.93=ha770c72_3
- cuda-crt-tools=12.8.93=ha770c72_3
- cuda-cudart=12.8.90=h5888daf_1
- cuda-cudart-dev=12.8.90=h5888daf_1
- cuda-cudart-dev_linux-64=12.8.90=h3f2d84a_1
- cuda-cudart-static=12.8.90=h5888daf_1
- cuda-cudart-static_linux-64=12.8.90=h3f2d84a_1
- cuda-cudart_linux-64=12.8.90=h3f2d84a_1
- cuda-cuobjdump=12.8.90=hbd13f7d_1
- cuda-cupti=12.8.90=h5888daf_1
- cuda-driver-dev_linux-64=12.8.90=h3f2d84a_1
- cuda-nvcc=12.8.93=hcdd1206_1
- cuda-nvcc-dev_linux-64=12.8.93=he91c749_3
- cuda-nvcc-impl=12.8.93=h85509e4_3
- cuda-nvcc-tools=12.8.93=he02047a_3
- cuda-nvcc_linux-64=12.8.93=h04802cd_1
- cuda-nvdisasm=12.8.90=hbd13f7d_1
- cuda-nvrtc=12.8.93=h5888daf_1
- cuda-nvtx=12.8.90=h5888daf_1
- cuda-nvvm-dev_linux-64=12.8.93=ha770c72_3
- cuda-nvvm-impl=12.8.93=he02047a_3
- cuda-nvvm-tools=12.8.93=he02047a_3
- cuda-version=12.8=h5d125a7_3
- cudnn=9.8.0.87=h81d5506_1
- cycler=0.11.0=pyhd3eb1b0_0
- cython=3.0.11=py39h5eee18b_1
- deprecated=1.2.13=py39h06a4308_0
- exceptiongroup=1.2.2=pyhd8ed1ab_1
- filelock=3.17.0=py39h06a4308_0
- fonttools=4.55.3=py39h5eee18b_0
- freetype=2.13.3=h48d6fc4_0
- fsspec=2024.12.0=py39h06a4308_0
- gcc_impl_linux-64=11.2.0=h1234567_1
- gcc_linux-64=11.2.0=h5c386dc_2
- get-annotations=0.1.2=pyhd8ed1ab_0
- glpk=5.0=h445213a_0
- gmp=6.3.0=h6a678d5_0
- gmpy2=2.2.1=py39h5eee18b_0
- gxx_impl_linux-64=11.2.0=h1234567_1
- gxx_linux-64=11.2.0=hc2dff05_2
- h5py=3.13.0=nompi_py39h30a5a8d_100
- hdf5=1.14.3=nompi_h2d575fe_109
- icu=75.1=he02047a_0
- ignite=0.5.2=py_0
- igraph=0.10.15=he44f51b_1
- importlib-metadata=8.5.0=py39h06a4308_0
- importlib_resources=6.4.0=py39h06a4308_0
- intel-openmp=2025.0.0=h06a4308_1171
- jinja2=3.1.6=py39h06a4308_0
- joblib=1.4.2=py39h06a4308_0
- kernel-headers_linux-64=3.10.0=h57e8cba_10
- kiwisolver=1.4.4=py39h6a678d5_0
- krb5=1.21.3=h143b758_0
- lcms2=2.17=h717163a_0
- ld_impl_linux-64=2.40=h12ee557_0
- legacy-api-wrap=1.4=pyhd8ed1ab_1
- leidenalg=0.10.2=py39h3d6467e_0
- lerc=4.0.0=h6a678d5_0
- libabseil=20240722.0=cxx17_hbbce691_4
- libaec=1.1.3=h6a678d5_0
- libblas=3.9.0=20_linux64_mkl
- libcblas=3.9.0=20_linux64_mkl
- libcublas=12.8.4.1=h9ab20c4_1
- libcufft=11.3.3.83=h5888daf_1
- libcurand=10.3.9.90=h9ab20c4_1
- libcurl=8.13.0=h332b0f4_0
- libcusolver=11.7.3.90=h9ab20c4_1
- libcusparse=12.5.8.93=h5888daf_1
- libdeflate=1.22=h5eee18b_0
- libedit=3.1.20230828=h5eee18b_0
- libev=4.33=hd590300_2
- libffi=3.4.4=h6a678d5_1
- libgcc=14.2.0=h767d61c_2
- libgcc-devel_linux-64=11.2.0=h1234567_1
- libgcc-ng=14.2.0=h69a702a_2
- libgfortran=14.2.0=h69a702a_2
- libgfortran-ng=14.2.0=h69a702a_2
- libgfortran5=14.2.0=hf1ad2bd_2
- libgomp=14.2.0=h767d61c_2
- libiconv=1.18=h4ce23a2_1
- libjpeg-turbo=3.0.3=h5eee18b_0
- liblapack=3.9.0=20_linux64_mkl
- libleidenalg=0.11.1=h00ab1b0_0
- libllvm14=14.0.6=hcd5def8_4
- libllvm19=19.1.7=ha7bfdaf_1
- libllvm20=20.1.2=ha7bfdaf_0
- liblzma=5.8.1=hb9d3cd8_0
- libmagma=2.8.0=h566cb83_2
- libmagma_sparse=2.8.0=h0af6554_0
- libmlir19=19.1.7=hdb19cb5_0
- libnghttp2=1.64.0=h161d5f1_0
- libnsl=2.0.1=hd590300_0
- libnvjitlink=12.8.93=h5888daf_1
- libpng=1.6.47=h943b412_0
- libprotobuf=5.28.2=h5b01275_0
- libsqlite=3.49.1=hee588c1_2
- libssh2=1.11.1=hf672d98_0
- libstdcxx=14.2.0=h8f9b012_2
- libstdcxx-devel_linux-64=11.2.0=h1234567_1
- libstdcxx-ng=14.2.0=h4852527_2
- libtiff=4.7.0=hc4654cb_2
- libtorch=2.5.1=cuda126_h5a272cc_302
- libuuid=2.38.1=h0b41bf4_0
- libuv=1.50.0=hb9d3cd8_0
- libwebp-base=1.5.0=h851e524_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.13.7=h4bc477f_1
- libzlib=1.3.1=hb9d3cd8_2
- lit=19.1.7=py39h06a4308_1
- llvm-openmp=20.1.2=h024ca30_0
- llvmlite=0.43.0=py39h6a678d5_1
- lz4-c=1.9.4=h6a678d5_1
- magma=2.8.0=h51420fd_0
- markupsafe=3.0.2=py39h5eee18b_0
- matplotlib-base=3.9.2=py39hbfdbfaf_1
- mkl=2023.2.0=h84fe81f_50496
- mkl-service=2.4.0=py39h5eee18b_2
- mkl_fft=1.3.11=py39h5eee18b_0
- mkl_random=1.2.8=py39h1128e8f_0
- mpc=1.3.1=h5eee18b_0
- mpfr=4.2.1=h5eee18b_0
- mpmath=1.3.0=py39h06a4308_0
- natsort=8.4.0=pyh29332c3_1
- nccl=2.26.2.1=ha44e49d_1
- ncurses=6.4=h6a678d5_0
- networkx=3.2.1=py39h06a4308_0
- numba=0.60.0=py39h0320e7d_0
- numexpr=2.10.1=py39h3c60e43_0
- openjpeg=2.5.3=h5fbd93e_0
- openssl=3.5.0=h7b32b05_0
- opentelemetry-api=1.30.0=py39h06a4308_0
- packaging=24.2=pyhd8ed1ab_2
- pandas=2.2.3=py39h6a678d5_0
- patsy=1.0.1=py39h06a4308_0
- pillow=11.1.0=py39h15c0740_0
- pthread-stubs=0.3=h0ce48e5_1
- pybedtools=0.12.0=py39h475c85d_0
- pybind11-abi=4=hd3eb1b0_1
- pydantic=1.8.2=py39h5eee18b_1
- pynndescent=0.5.4=pyhd3eb1b0_0
- pyparsing=3.2.0=py39h06a4308_0
- pysam=0.23.0=py39hdd5828d_0
- python=3.9.18=h0755675_1_cpython
- python-dateutil=2.9.0post0=py39h06a4308_2
- python-igraph=0.11.8=py39hb479397_0
- python-multipart=0.0.20=py39h06a4308_0
- python-tzdata=2023.3=pyhd3eb1b0_0
- python_abi=3.9=6_cp39
- pytorch=2.5.1=cuda126_py39hfe5c751_302
- pytz=2024.1=py39h06a4308_0
- pyyaml=6.0.2=py39h5eee18b_0
- readline=8.2=h5eee18b_0
- scanpy=1.10.3=pyhd8ed1ab_0
- scikit-learn=1.6.1=py39h6a678d5_0
- scipy=1.13.1=py39h5f9d8c6_1
- seaborn=0.13.2=py39h06a4308_2
- session-info=1.0.0=pyhd8ed1ab_0
- six=1.17.0=py39h06a4308_0
- sleef=3.8=h1b44611_0
- sparse=0.15.5=pyh72ffeb9_0
- sqlite=3.31.1=h7b6447c_0
- statsmodels=0.14.4=py39h5eee18b_0
- stdlib-list=0.10.0=py39h06a4308_0
- sympy=1.13.3=py39h06a4308_1
- sysroot_linux-64=2.17=h57e8cba_10
- tbb=2021.8.0=hdb19cb5_0
- texttable=1.7.0=pyhd8ed1ab_1
- threadpoolctl=3.5.0=py39h2f386ee_0
- tk=8.6.13=noxft_h4845f30_101
- tqdm=4.67.1=py39h2f386ee_0
- triton=3.2.0=cuda126py39h21886b0_1
- typing-extensions=4.12.2=py39h06a4308_0
- typing_extensions=4.12.2=py39h06a4308_0
- tzdata=2025a=h04d1e81_0
- umap-learn=0.5.7=py39hf3d152e_1
- unicodedata2=15.1.0=py39h5eee18b_1
- wheel=0.45.1=py39h06a4308_0
- wrapt=1.17.0=py39h5eee18b_0
- xorg-libxau=1.0.12=hb9d3cd8_0
- xorg-libxdmcp=1.1.5=hb9d3cd8_0
- xz=5.6.4=h5eee18b_1
- yaml=0.2.5=h7b6447c_0
- zipp=3.21.0=py39h06a4308_0
- zlib=1.3.1=hb9d3cd8_2
- zstd=1.5.7=hb8e6e7a_2
- pip:
- anyio==4.9.0
- click==8.1.8
- dill==0.3.9
- fastapi==0.115.12
- h11==0.14.0
- idna==3.10
- numpy==1.26.4
- nvidia-ml-py3==7.352.0
- parse==1.20.2
- pip==25.0.1
- setuptools==78.1.0
- sniffio==1.3.1
- starlette==0.46.1
- uvicorn==0.34.0
prefix: /home/ning/anaconda3/envs/economy