Update code/alphafold_featureVector.py

code/alphafold_featureVector.py

@@ -699,8 +699,7 @@ def alphafold(input_set, mode, impute):
                         
                     
                         if sasa_pos != np.NaN:
-                            st.write('HERE')
-                            sasa = 'nan'
+                            sasa_val = 'nan'
                             for filename in  list(Path(path_to_output_files / 'freesasa_files').glob("*"))[1:]:
     
                                 try:
@@ -716,12 +715,11 @@ def alphafold(input_set, mode, impute):
                                         if str(k.strip()[10:13].strip()) == str(sasa_pos):
                                             residue = str(k.split(' ')[1].strip())
                                             if wt == threeToOne(residue):
-                                                sasa = str(list(filter(None,k.split(' ')))[5]).strip('\n')
+                                                sasa_val = str(list(filter(None,k.split(' ')))[5]).strip('\n')
                                             elif wt != threeToOne(residue):
-                                                sasa = str(list(filter(None,k.split(' ')))[5]).strip('\n') + '*'
-                                                st.write('12')
+                                                sasa_val = str(list(filter(None,k.split(' ')))[5]).strip('\n') + '*'
                                             else:
-                                                sasa = 'nan'
+                                                sasa_val = 'nan'
                         else:
                             sasa = 'nan'
                         st.write('lxf')