Update code/alphafold_featureVector.py

code/alphafold_featureVector.py

@@ -699,6 +699,7 @@ def alphafold(input_set, mode, impute):
                         
                     
                         if sasa_pos != np.NaN:
+                            st.write('HERE')
                             sasa = 'nan'
                             for filename in  list(Path(path_to_output_files / 'freesasa_files').glob("*"))[1:]:
     
@@ -713,32 +714,17 @@ def alphafold(input_set, mode, impute):
                                     file = files.readlines()
                                     for k in file:
                                         if str(k.strip()[10:13].strip()) == str(sasa_pos):
-                                            st.write('WHY ')
-                                            st.write(str(k[4:7].strip()))
-                                            st.write('WHY 2')
                                             residue = str(k.split(' ')[1].strip())
-                                            st.write('k', k)
-                                            st.write(list(filter(None,k.split(' '))))
-                                            st.write(list(filter(None,k.split(' ')))[5])
                                             if wt == threeToOne(residue):
                                                 sasa = str(list(filter(None,k.split(' ')))[5]).strip('\n')
-                                                st.write('11')
                                             elif wt != threeToOne(residue):
                                                 sasa = str(list(filter(None,k.split(' ')))[5]).strip('\n') + '*'
                                                 st.write('12')
                                             else:
                                                 sasa = 'nan'
-                                                st.write('13')
-                                            st.write('1')
-                                        st.write('2')
-                                    st.write('3')
-                                st.write('4')
-                            st.write('5')
-                        
-                
                         else:
                             sasa = 'nan'
-                            st.write('6')
+                        st.write('lxf')
                         #sasa_val = sasa('alphafold', 'nan', uniprotID, sasa_pos, uniprot_matched.at[i, 'wt'], mode,
                         #                path_to_output_files, file_type='gzip')
                         st.write('I am here', sasa_val)